Citrus Sinensis ID: 000830
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1265 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LPK2 | 1273 | ABC transporter B family | yes | no | 0.984 | 0.978 | 0.789 | 0.0 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.962 | 0.992 | 0.769 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.977 | 0.988 | 0.515 | 0.0 | |
| Q9C7F8 | 1245 | ABC transporter B family | no | no | 0.976 | 0.991 | 0.502 | 0.0 | |
| Q9C7F2 | 1247 | ABC transporter B family | no | no | 0.952 | 0.966 | 0.509 | 0.0 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.967 | 0.951 | 0.497 | 0.0 | |
| Q9M1Q9 | 1296 | ABC transporter B family | no | no | 0.962 | 0.939 | 0.453 | 0.0 | |
| O80725 | 1286 | ABC transporter B family | no | no | 0.958 | 0.943 | 0.456 | 0.0 | |
| Q9FWX7 | 1278 | ABC transporter B family | no | no | 0.954 | 0.945 | 0.456 | 0.0 | |
| Q9FWX8 | 1273 | ABC transporter B family | no | no | 0.974 | 0.968 | 0.438 | 0.0 |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 2056 bits (5327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 990/1254 (78%), Positives = 1118/1254 (89%), Gaps = 8/1254 (0%)
Query: 8 SFPVNDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACV 67
S P N Y + + + +K+ + VSL KLF+FADFYD +LM+LGS+GAC+
Sbjct: 28 SSPTN-YTHLKLKKMQPSGDPAPEKEKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACI 86
Query: 68 HGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMY 127
HG SVP+FFIFFGKLINIIGLAYLFPK ASH+VAKYSLDFVYLSVAILFSSW+EV+CWM+
Sbjct: 87 HGASVPIFFIFFGKLINIIGLAYLFPKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMH 146
Query: 128 TGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYI 187
TGERQAAKMR AYLRSML+QDISLFDTEASTGEVISAITSDI+VVQDALSEKVGNF+HYI
Sbjct: 147 TGERQAAKMRRAYLRSMLSQDISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYI 206
Query: 188 SRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEV 247
SRF+ GF IGF VWQISLVTLSIVPLIALAGG+YA+V IGLIARVRKSY+KAGEIAEEV
Sbjct: 207 SRFIAGFAIGFTSVWQISLVTLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEV 266
Query: 248 IGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYV 307
IGNVRTVQAF GE++AV++Y+EAL NTYKYGRKAGL KGLGLGSMHCVLFLSW+LLVW+
Sbjct: 267 IGNVRTVQAFTGEERAVRLYREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFT 326
Query: 308 SVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKA 367
SVVVHK I++GG+SFTTMLNVVIAGLSLGQAAPDI+AF+RAKAAAYPIF+MIER+T++K
Sbjct: 327 SVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKT 386
Query: 368 SSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVI 427
S+K+GRKL K+ GHI+FKD +F YPSRPDV IFD+ L IPAGKIVALVGGSGSGKSTVI
Sbjct: 387 SAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVI 446
Query: 428 SLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM 487
SLIERFYEP+SG +LLDGNNI LD+KWLR QIGLVNQEPALFATTIRENILYGKDDAT
Sbjct: 447 SLIERFYEPISGAVLLDGNNISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATA 506
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
EEITRAAKLSEA+SFI+NLPE FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA
Sbjct: 507 EEITRAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 566
Query: 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
TSALDAESE SVQEALDRVMVGRTTVVVAHRLST+RNAD+IAVV KIV+ G+HE LIS
Sbjct: 567 TSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLIS 626
Query: 608 NPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLS 667
NP+ AY++L++LQE AS Q N S + RP SIK+SRELS TR+SF SE+ESV
Sbjct: 627 NPDGAYSSLLRLQETASLQRNPSLNRTLSRPHSIKYSRELSRTRSSFC----SERESVTR 682
Query: 668 HGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYY 727
AD P+ V+ +LYSM+RPDW YGVCGTICA IAG+QMPLFALGVSQALV+YY
Sbjct: 683 PDGAD---PSKKVKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYY 739
Query: 728 MDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIG 787
WD TQ+E+KKI ILFCCA+VIT+IV+ IEH+ FG MGERLTLRVRE MF AIL NEIG
Sbjct: 740 SGWDETQKEIKKIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIG 799
Query: 788 WFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVV 847
WFDE+DN+SS+LASRLESDATLL+TIVVDRSTIL+QN GLV SF+IAFILNWR+TLVV+
Sbjct: 800 WFDEVDNTSSMLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVL 859
Query: 848 ATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSR 907
ATYPL+ISGHISEKLF QGYGG+L+KAYLKANMLA E+VSNIRTVAAFC+E+K+LELYSR
Sbjct: 860 ATYPLVISGHISEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSR 919
Query: 908 ELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLI 967
EL+EPSK SF RGQIAG+FYG+SQFFIFSSYGLALWYGS LM K LA FKSVMK+FMVLI
Sbjct: 920 ELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLI 979
Query: 968 VTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSY 1027
VTALAMGETLAL PDLLKGNQM ASVFE+LDRKTQ++G+ EEL NVEGTIEL+GVHFSY
Sbjct: 980 VTALAMGETLALAPDLLKGNQMVASVFEILDRKTQIVGETSEELNNVEGTIELKGVHFSY 1039
Query: 1028 PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL 1087
PSRP+VVIF+DF+L VRAGKSMALVGQSGSGKS+V+SLILRFYDPTAGKVM++G DIK+L
Sbjct: 1040 PSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKL 1099
Query: 1088 NLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYS 1147
+LK+LRKHI LVQQEPALFAT+IYENILYG +GAS+ EV+E+A LANAHSFI++LPEGYS
Sbjct: 1100 DLKALRKHIGLVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYS 1159
Query: 1148 TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRT 1207
TKVGERGVQ+SGGQ+QR+AIARA+LKNP ILLLDEATSALDVESERVVQQAL RLM RT
Sbjct: 1160 TKVGERGVQMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRLMANRT 1219
Query: 1208 TIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQDP 1261
T++VAHRLSTIKNAD ISV+ GKI+EQG+H LV N+ G YFKLI+LQQ+Q P
Sbjct: 1220 TVVVAHRLSTIKNADTISVLHGGKIVEQGSHRKLVLNKSGPYFKLISLQQQQQP 1273
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1974 bits (5113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1241 (76%), Positives = 1098/1241 (88%), Gaps = 23/1241 (1%)
Query: 21 NNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFG 80
+N+ D +++K++++ SVS KLF+FADFYD +LM+LGSIGAC+HG SVPVFFIFFG
Sbjct: 4 SNDPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFG 63
Query: 81 KLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAY 140
KLINIIGLAYLFP+ ASHKVAKYSLDFVYLSV ILFSSW+EV+CWM+TGERQAAK+R AY
Sbjct: 64 KLINIIGLAYLFPQEASHKVAKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRKAY 123
Query: 141 LRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200
LRSML+QDISLFDTE STGEVISAITS+I+VVQDA+SEKVGNFMH+ISRF+ GF IGFA
Sbjct: 124 LRSMLSQDISLFDTEISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGFAS 183
Query: 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE 260
VWQISLVTLSIVP IALAGG+YA+V+ GLI RVRKSYVKA EIAEEVIGNVRTVQAF GE
Sbjct: 184 VWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFTGE 243
Query: 261 DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE 320
+KAV Y+ AL NTY YGRKAGLAKGLGLGS+H VLFLSW+LL+W+ S+VVHK I+NGGE
Sbjct: 244 EKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANGGE 303
Query: 321 SFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380
SFTTMLNVVIAGLSLGQAAPDI+ F+RA AAAYPIF+MIER+T KTGRKL ++G
Sbjct: 304 SFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIERNT----EDKTGRKLGNVNG 359
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I FKDV+F YPSRPDV IFDK IPAGK+VALVGGSGSGKST+ISLIERFYEP G
Sbjct: 360 DILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGA 419
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
++LDGN+I+ LDLKWLR IGLVNQEP LFATTIRENI+YGKDDAT EEIT AAKLSEA+
Sbjct: 420 VMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAI 479
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
SFI+NLPE FETQVGERGIQLSGGQKQRI+ISRAIVKNPSILLLDEATSALDAESE VQ
Sbjct: 480 SFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQ 539
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
EALDRVMVGRTTVVVAHRLST+RNAD+IAVV G KI+++GSH+ELISNP+ AY++L+++Q
Sbjct: 540 EALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQ 599
Query: 621 EAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAK 680
EAAS N + P++ P+S K EL T T+ S +SV +P T K
Sbjct: 600 EAAS--PNLNHTPSL--PVSTKPLPELPITETT-----SSIHQSV--------NQPDTTK 642
Query: 681 H--VSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVK 738
V+ +LYSM+RPDW YG+CGT+ + IAG+QMPLFALG++QALV+YYMDW+TTQ EVK
Sbjct: 643 QAKVTVGRLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQALVSYYMDWETTQNEVK 702
Query: 739 KITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSI 798
+I+ILFCC +VITVIVH IEH +FGIMGERLTLRVR+KMFSAIL NEIGWFD++DN+SS+
Sbjct: 703 RISILFCCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSM 762
Query: 799 LASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHI 858
LASRLESDATLLRTIVVDRSTIL++N GLV +F+I+FILNWR+TLVV+ATYPLIISGHI
Sbjct: 763 LASRLESDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLATYPLIISGHI 822
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918
SEK+F QGYGGNLSKAYLKANMLA E++SNIRTV AFC+E+KVL+LYS+EL+EPS+RSF
Sbjct: 823 SEKIFMQGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFR 882
Query: 919 RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978
RGQ+AGI YG+SQFFIFSSYGLALWYGS+LM K L+SF+SVMK+FMVLIVTAL MGE LA
Sbjct: 883 RGQMAGILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLA 942
Query: 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKD 1038
L PDLLKGNQM SVFE+LDR+TQV+GD GEEL+NVEGTIEL+GVHFSYPSRP+V IF D
Sbjct: 943 LAPDLLKGNQMVVSVFELLDRRTQVVGDTGEELSNVEGTIELKGVHFSYPSRPDVTIFSD 1002
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIAL 1098
FNL V +GKSMALVGQSGSGKS+VLSL+LRFYDPTAG +M+DG DIK+L LKSLR+HI L
Sbjct: 1003 FNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGL 1062
Query: 1099 VQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLS 1158
VQQEPALFAT+IYENILYGK+GASE EV+EAAKLANAHSFIS+LPEGYSTKVGERG+Q+S
Sbjct: 1063 VQQEPALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMS 1122
Query: 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTI 1218
GGQ+QR+AIARAVLKNPEILLLDEATSALDVESERVVQQAL RLMR RTT++VAHRLSTI
Sbjct: 1123 GGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTTVVVAHRLSTI 1182
Query: 1219 KNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQ 1259
KN+D ISVI+ GKIIEQG+H+ LVEN++G Y KLI+LQQRQ
Sbjct: 1183 KNSDMISVIQDGKIIEQGSHNILVENKNGPYSKLISLQQRQ 1223
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1321 bits (3420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/1256 (51%), Positives = 905/1256 (72%), Gaps = 19/1256 (1%)
Query: 17 SSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFF 76
S N + T E+ KK++Q S+ FKLF+FAD +DY+LM +GS+GA VHG S+PVFF
Sbjct: 2 SETNTTDAKTVPAEAEKKKEQ--SLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFF 59
Query: 77 IFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKM 136
+ FG+++N G + H+V++YSL FVYL + + FSS+ E++CWMY+GERQ A +
Sbjct: 60 LLFGQMVNGFGKNQMDLHQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAAL 119
Query: 137 RMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFII 196
R YL ++L QD+ FDT+A TG+++ ++++D ++VQDA+SEKVGNF+HY+S FL G ++
Sbjct: 120 RKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVV 179
Query: 197 GFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQA 256
GF W+++L++++++P IA AGG+YAY G+ ++ R+SY AG IAE+ I VRTV +
Sbjct: 180 GFVSAWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYS 239
Query: 257 FAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHIS 316
+ GE KA+ Y +A+ T K G KAG+AKGLGLG + + +SW+L+ WY V + +
Sbjct: 240 YVGESKALNAYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQT 299
Query: 317 NGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376
+GG++FT + + ++ G+SLGQ+ ++ AF + KAA Y + E+I + G+ LD
Sbjct: 300 DGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLD 359
Query: 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP 436
++ G+IEFKDV+F YPSRPDV IF F + P+GK VA+VGGSGSGKSTV+SLIERFY+P
Sbjct: 360 QVHGNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDP 419
Query: 437 LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKL 496
SG+ILLDG IK L LK+LR+QIGLVNQEPALFATTI ENILYGK DATM E+ AA
Sbjct: 420 NSGQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASA 479
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
+ A SFI+ LP+ ++TQVGERG+QLSGGQKQRIAI+RA++K+P ILLLDEATSALDA SE
Sbjct: 480 ANAHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSE 539
Query: 557 NSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
+ VQEALDRVMVGRTTVVVAHRL TIRN D IAV+Q ++V+TG+HEELI+ + AYA+L
Sbjct: 540 SIVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASL 598
Query: 617 VQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSF-GASFRSEKESVLSHGA----- 670
++ QE + S+ P+ R S + S LS S S R+ S S GA
Sbjct: 599 IRFQEMVGTRDFSN--PSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYS-YSTGADGRIE 655
Query: 671 ----ADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQAL-VA 725
A+ A +L + P+W Y + G + +I++G P FA+ +S + V
Sbjct: 656 MISNAETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVF 715
Query: 726 YYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNE 785
YY D+D+ +R+ K+ ++ A + V + I+H F IMGE LT RVR M SAIL NE
Sbjct: 716 YYTDYDSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNE 775
Query: 786 IGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845
+GWFDE +++SS++A+RL +DA +++ + +R ++++QN + SF++AFI+ WR++L+
Sbjct: 776 VGWFDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLL 835
Query: 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELY 905
++ T+PL++ + +++L +G+ G+ +KA+ K +M+A E VSNIRTVAAF ++ K+L L+
Sbjct: 836 ILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLF 895
Query: 906 SRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMV 965
EL P KRS R Q +G +G+SQ ++ S L LWYG+ L+ K +++F V+K F+V
Sbjct: 896 CHELRVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVV 955
Query: 966 LIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV--IGDIGEELTNVEGTIELRGV 1023
L++TA ++ ET++L P++++G + SVF VLDR+T++ + + + G IE R V
Sbjct: 956 LVITANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHV 1015
Query: 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID 1083
F+YPSRP+V++F+DFNL++RAG S ALVG SGSGKS+V+++I RFYDP AGKVM+DG D
Sbjct: 1016 DFAYPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKD 1075
Query: 1084 IKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALP 1143
I+RLNLKSLR I LVQQEPALFA +I++NI YGKDGA+E EVI+AA+ ANAH FIS LP
Sbjct: 1076 IRRLNLKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLP 1135
Query: 1144 EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM 1203
EGY T VGERGVQLSGGQKQR+AIARAVLKNP +LLLDEATSALD ESE V+Q+AL+RLM
Sbjct: 1136 EGYKTPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLM 1195
Query: 1204 RKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQ 1259
R RTT++VAHRLSTI+ D I VI+ G+I+EQG+HS LV +GAY +L+ LQ +
Sbjct: 1196 RGRTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQTHR 1251
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1258 bits (3255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/1252 (50%), Positives = 881/1252 (70%), Gaps = 17/1252 (1%)
Query: 13 DYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSV 72
D S+N N + + KK +K SVSL LF+ AD DY LM LG +GAC+HG ++
Sbjct: 2 DNTERSSNGNIQAETEAKEEKKNIKKESVSLMGLFSAADKLDYFLMLLGGLGACIHGATL 61
Query: 73 PVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQ 132
P+FF+FFGK+++ +G PK S +V++ +L VYL + S+WI VSCWM TGERQ
Sbjct: 62 PLFFVFFGKMLDSLGNLSTDPKAISSRVSQNALYLVYLGLVNFVSAWIGVSCWMQTGERQ 121
Query: 133 AAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLG 192
A++R+ YL+S+L +DI+ FDTEA +I I+SD I+VQDA+ +K + + Y+S+F+
Sbjct: 122 TARLRINYLKSILAKDITFFDTEARDSNLIFHISSDAILVQDAIGDKTDHVLRYLSQFIA 181
Query: 193 GFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVR 252
GF+IGF VWQ++L+TL +VPLIA+AGG YA V + + +Y AG++AEEV+ VR
Sbjct: 182 GFVIGFLSVWQLTLLTLGVVPLIAIAGGGYAIVMSTISEKSETAYADAGKVAEEVMSQVR 241
Query: 253 TVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH 312
TV AF GE+KAVK Y +L K G+++GLAKGLG+G + +LF +W+LL+WY S++V
Sbjct: 242 TVYAFVGEEKAVKSYSNSLKKALKLGKRSGLAKGLGVGLTYSLLFCAWALLLWYASLLVR 301
Query: 313 KHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI-ERDTMSKASSKT 371
+NG ++FTT+LNV+ +G +LGQAAP ++A + + AA IF MI ++ S
Sbjct: 302 HGKTNGAKAFTTILNVIFSGFALGQAAPSLSAIAKGRVAAANIFRMIGNNNSESSQRLDE 361
Query: 372 GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431
G L ++G IEF+ VSF YPSRP++ +F+ I +GK A VG SGSGKST+IS+++
Sbjct: 362 GTTLQNVAGRIEFQKVSFAYPSRPNM-VFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQ 420
Query: 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEIT 491
RFYEP SGEILLDGN+IK L LKW R+Q+GLV+QEPALFATTI NIL GK++A M++I
Sbjct: 421 RFYEPNSGEILLDGNDIKSLKLKWFREQLGLVSQEPALFATTIASNILLGKENANMDQII 480
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
AAK + A SFI +LP + TQVGE G QLSGGQKQRIAI+RA+++NP ILLLDEATSAL
Sbjct: 481 EAAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 540
Query: 552 DAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
DAESE VQ+ALD VM RTT+VVAHRLSTIRN D I V++ ++ +TGSH EL+
Sbjct: 541 DAESEKIVQQALDNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGD 600
Query: 612 AYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAA 671
YA LV QE Q+++ R + + + +G+ +S S S
Sbjct: 601 -YATLVNCQETEPQENS--------RSIMSETCKSQAGSSSSRRVSSSRRTSSFRVDQEK 651
Query: 672 DATEPATAKHVSAIKLYSMVR---PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM 728
+ + S+ ++ +++ P+W Y + G+I A++AGAQ PLF++G++ L A+Y
Sbjct: 652 TKNDDSKKDFSSSSMIWELIKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYS 711
Query: 729 DW-DTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIG 787
+ + +R+V+K+ I+F A ++T ++ ++H + +MGERLT RVR +FSAILSNEIG
Sbjct: 712 PFPNVIKRDVEKVAIIFAGAGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIG 771
Query: 788 WFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVV 847
WFD +N++ L S L +DATL+R+ + DR + ++QN L + +AF +WR+ VV
Sbjct: 772 WFDLDENNTGSLTSILAADATLVRSALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVT 831
Query: 848 ATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSR 907
A +PL+I+ ++E+LF +G+GG+ ++AY +A +A EA++NIRTVAA+ +E ++ E ++
Sbjct: 832 ACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTC 891
Query: 908 ELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLI 967
EL +P+K +F+RG I+G YG+SQF F SY L LWY SVL+ + +F +KSFMVLI
Sbjct: 892 ELSKPTKNAFVRGHISGFGYGLSQFLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLI 951
Query: 968 VTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEE--LTNVEGTIELRGVHF 1025
VTA ++ ETLAL PD++KG Q SVF VL R+T++ D ++ V+G IE R V F
Sbjct: 952 VTAFSVSETLALTPDIVKGTQALGSVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSF 1011
Query: 1026 SYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIK 1085
YP+RPE+ IFK+ NL+V AGKS+A+VG SGSGKSTV+ LI+RFYDP+ G + +DG DIK
Sbjct: 1012 VYPTRPEIDIFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIK 1071
Query: 1086 RLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEG 1145
LNL+SLRK +ALVQQEPALF+T+IYENI YG + ASE E++EAAK ANAH FI + EG
Sbjct: 1072 TLNLRSLRKKLALVQQEPALFSTTIYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEG 1131
Query: 1146 YSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK 1205
Y T G++GVQLSGGQKQRVAIARAVLK+P +LLLDEATSALD SE++VQ+AL +LM+
Sbjct: 1132 YKTHAGDKGVQLSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKG 1191
Query: 1206 RTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQ 1257
RTT++VAHRLSTI+ AD ++V+ G+++E+G+H LV +G Y +L +LQ+
Sbjct: 1192 RTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHRELVSIPNGFYKQLTSLQE 1243
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/1229 (50%), Positives = 865/1229 (70%), Gaps = 24/1229 (1%)
Query: 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHK 99
SVSL LF+ AD DY LM LG +G C+HG ++P+FF+FFG +++ +G P S +
Sbjct: 30 SVSLMGLFSAADNVDYFLMFLGGLGTCIHGGTLPLFFVFFGGMLDSLGKLSTDPNAISSR 89
Query: 100 VAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTG 159
V++ +L VYL + L S+WI V+CWM TGERQ A++R+ YL+S+L +DI+ FDTEA
Sbjct: 90 VSQNALYLVYLGLVNLVSAWIGVACWMQTGERQTARLRINYLKSILAKDITFFDTEARDS 149
Query: 160 EVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAG 219
I I+SD I+VQDA+ +K G+ + Y+ +F+ GF+IGF VWQ++L+TL +VPLIA+AG
Sbjct: 150 NFIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAG 209
Query: 220 GMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279
G YA V + + +Y AG++AEEV+ VRTV AF GE+KAVK Y +L K +
Sbjct: 210 GGYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLSK 269
Query: 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAA 339
++GLAKGLG+G + +LF +W+LL WY S++V +NG ++FTT+LNV+ +G +LGQA
Sbjct: 270 RSGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAV 329
Query: 340 PDITAFIRAKAAAYPIFEMIERDTMSKASS-KTGRKLDKLSGHIEFKDVSFCYPSRPDVA 398
P ++A + + AA IF+MI + + + + G L + G IEF VSF YPSRP++
Sbjct: 330 PSLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFAYPSRPNM- 388
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
+F+ I +GK A VG SGSGKST+IS+++RFYEP SGEILLDGN+IK L LKWLR+
Sbjct: 389 VFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLRE 448
Query: 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
Q+GLV+QEPALFATTI NIL GK+ A M++I AAK + A SFI +LP + TQVGE G
Sbjct: 449 QMGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGG 508
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHR 578
QLSGGQKQRIAI+RA+++NP ILLLDEATSALDAESE VQ+ALD VM RTT+V+AHR
Sbjct: 509 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHR 568
Query: 579 LSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRP 638
LSTIRN D I V++ ++ +TGSH ELIS YA LV Q+ Q+ N+ R
Sbjct: 569 LSTIRNVDKIVVLRDGQVRETGSHSELISRGGD-YATLVNCQDTEPQE-------NL-RS 619
Query: 639 LSIKFSRELSG-------TRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMV 691
+ + R +G + +SFR ++E + +++ IKL +
Sbjct: 620 VMYESCRSQAGSYSSRRVFSSRRTSSFREDQEKTEKDSKGEDLISSSSMIWELIKLNA-- 677
Query: 692 RPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDT-TQREVKKITILFCCAAVI 750
P+W Y + G+I A++AG+Q LF++G++ L +Y + + +REV K+ I+F A ++
Sbjct: 678 -PEWLYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVGAGIV 736
Query: 751 TVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLL 810
T ++ ++H + +MGERLT RVR +FSAILSNEIGWFD +N++ L S L +DATL+
Sbjct: 737 TAPIYILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLV 796
Query: 811 RTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGN 870
R+ + DR + ++QN L + +AF +WR+ VV A +PL+I+ ++E+LF +G+GG+
Sbjct: 797 RSAIADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGD 856
Query: 871 LSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGIS 930
++AY +A LA EA+SNIRTVAAF +E ++ E ++ EL +P+K + +RG I+G YG+S
Sbjct: 857 YTRAYSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGYGLS 916
Query: 931 QFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMA 990
Q F SY L LWY SVL+ + +F+ +KSFMVL+VTA ++ ETLAL PD++KG Q
Sbjct: 917 QCLAFCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKGTQAL 976
Query: 991 ASVFEVLDRKTQVIGDIGEE--LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKS 1048
SVF VL R+T++ D +T+++G IE R V F+YP+RPE+ IFK+ NL+V AGKS
Sbjct: 977 GSVFRVLHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSAGKS 1036
Query: 1049 MALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFAT 1108
+A+VG SGSGKSTV+ LI+RFYDP+ G + +DG DIK +NL+SLRK +ALVQQEPALF+T
Sbjct: 1037 LAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPALFST 1096
Query: 1109 SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168
SI+ENI YG + ASE E+IEAAK ANAH FIS + EGY T VG++GVQLSGGQKQRVAIA
Sbjct: 1097 SIHENIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRVAIA 1156
Query: 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIE 1228
RAVLK+P +LLLDEATSALD +E+ VQ+AL +LM+ RTTI+VAHRLSTI+ AD I V+
Sbjct: 1157 RAVLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLH 1216
Query: 1229 SGKIIEQGTHSSLVENEDGAYFKLINLQQ 1257
GK++E+G+H LV DG Y KL +LQ+
Sbjct: 1217 KGKVVEKGSHRELVSKSDGFYKKLTSLQE 1245
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1219 bits (3155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/1245 (49%), Positives = 870/1245 (69%), Gaps = 21/1245 (1%)
Query: 34 KQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFP 93
K+ + R V+ +LF FAD DY+LM +GS+GA VHG S+P+F FF L+N G
Sbjct: 20 KKAEIRGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNV 79
Query: 94 KTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFD 153
+ +V KY+L F+ + AI SSW E+SCWM++GERQ KMR+ YL + LNQDI FD
Sbjct: 80 EKMMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFD 139
Query: 154 TEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVP 213
TE T +V+ AI +D ++VQDA+SEK+GNF+HY++ F+ GFI+GF VWQ++LVTL++VP
Sbjct: 140 TEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVP 199
Query: 214 LIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSN 273
LIA+ GG++ L + ++S +AG I E+ + +R V AF GE +A + Y AL
Sbjct: 200 LIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKI 259
Query: 274 TYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGL 333
K G K GLAKG+GLG+ + V+F ++LL+WY +V H++NGG + TM V+I GL
Sbjct: 260 AQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGL 319
Query: 334 SLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPS 393
+LGQ+AP + AF +AK AA IF +I+ + +S++G +LD ++G +E K+V F YPS
Sbjct: 320 ALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPS 379
Query: 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453
RPDV I + FCL +PAGK +ALVG SGSGKSTV+SLIERFY+P SG++LLDG ++K L L
Sbjct: 380 RPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKL 439
Query: 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
+WLRQQIGLV+QEPALFAT+I+ENIL G+ DA EI AA+++ A SFI LP+ F+TQ
Sbjct: 440 RWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQ 499
Query: 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTV 573
VGERG+QLSGGQKQRIAI+RA++KNP+ILLLDEATSALD+ESE VQEALDR M+GRTT+
Sbjct: 500 VGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTL 559
Query: 574 VVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN-PNSAYAALVQLQEAASQQSNSSQC 632
++AHRLSTIR AD++AV+Q + + G+H+EL S N YA L+++QEAA + + S+
Sbjct: 560 IIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNAR 619
Query: 633 PNMGRPLSIK--FSRELSGTRTSFGASFRSEKESVLSHG----AADATEPATAKHV---- 682
+ RP S + S + +S+G S S + S S + DA+ ++
Sbjct: 620 KSSARPSSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAF 679
Query: 683 -----SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYY-MDWDTTQRE 736
S +L M P+W Y + G++ ++I G+ FA +S L YY D + ++
Sbjct: 680 KDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQ 739
Query: 737 VKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSS 796
+ K L + ++ + ++H + I+GE LT RVREKM SA+L NE+ WFD+ +N S
Sbjct: 740 IDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENES 799
Query: 797 SILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISG 856
+ +A+RL DA +R+ + DR ++++QN L+ + F+L WR+ LV+VA +P++++
Sbjct: 800 ARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAA 859
Query: 857 HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRS 916
+ +K+F G+ G+L A+ K LA EA++N+RTVAAF SE K++ LY+ L P KR
Sbjct: 860 TVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRC 919
Query: 917 FIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGET 976
F +GQIAG YG++QF +++SY L LWY S L+ ++ F ++ FMVL+V+A ET
Sbjct: 920 FWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAET 979
Query: 977 LALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELT---NVEGTIELRGVHFSYPSRPEV 1033
L L PD +KG Q SVFE+LDRKT++ D + + G +EL+ + FSYPSRP++
Sbjct: 980 LTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPDI 1039
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR 1093
IF+D +L+ RAGK++ALVG SG GKS+V+SLI RFY+P++G+VM+DG DI++ NLK++R
Sbjct: 1040 QIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIR 1099
Query: 1094 KHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153
KHIA+V QEP LF T+IYENI YG + A+E E+I+AA LA+AH FISALPEGY T VGER
Sbjct: 1100 KHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYVGER 1159
Query: 1154 GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
GVQLSGGQKQR+AIARA+++ EI+LLDEATSALD ESER VQ+AL + RT+I+VAH
Sbjct: 1160 GVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIVVAH 1219
Query: 1214 RLSTIKNADQISVIESGKIIEQGTHSSLVENE-DGAYFKLINLQQ 1257
RLSTI+NA I+VI+ GK+ EQG+HS L++N DG Y ++I LQ+
Sbjct: 1220 RLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQR 1264
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1073 bits (2775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/1237 (45%), Positives = 823/1237 (66%), Gaps = 19/1237 (1%)
Query: 36 QQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKT 95
++ ++V KLFAFAD +D ILM LG+IGA +G+ P+ I FG +I++ G
Sbjct: 58 EKTKTVPFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFG-QNQNSSD 116
Query: 96 ASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTE 155
S K+AK +L FVYL + L ++ ++VS WM +GERQA ++R YL+++L QDI+ FD E
Sbjct: 117 VSDKIAKVALKFVYLGLGTLVAALLQVSGWMISGERQAGRIRSLYLQTILRQDIAFFDVE 176
Query: 156 ASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLI 215
+TGEV+ ++ D +++QDA+ EKVG + +S F+GGF+I F W ++LV +S +PL+
Sbjct: 177 TNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLVSTFIGGFVIAFTEGWLLTLVMVSSIPLL 236
Query: 216 ALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTY 275
++G A V + +R + SY KA + E+ +G++RTV +F GE +A+ Y + L + Y
Sbjct: 237 VMSGAALAIVISKMASRGQTSYAKAAVVVEQTVGSIRTVASFTGEKQAISNYNKHLVSAY 296
Query: 276 KYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSL 335
+ G G + GLGLG+++ V+F +++L VWY ++ + GG+ + V+ +SL
Sbjct: 297 RAGVFEGASTGLGLGTLNIVIFCTYALAVWYGGKMILEKGYTGGQVLIIIFAVLTGSMSL 356
Query: 336 GQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRP 395
GQA+P ++AF +AAAY +FE I+R AS TG+ LD + G IE +V+F YP+RP
Sbjct: 357 GQASPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYPARP 416
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
+ IF F L I +G VALVG SGSGKSTV+SLIERFY+P SGE+ +DG N+K LKW
Sbjct: 417 EEQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGINLKEFQLKW 476
Query: 456 LRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVG 515
+R +IGLV+QEP LF ++I+ENI YGK++AT+EEI +A +L+ A FI LP+ +T VG
Sbjct: 477 IRSKIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTMVG 536
Query: 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVV 575
E G QLSGGQKQRIA++RAI+K+P ILLLDEATSALDAESE VQEALDR+MV RTTVVV
Sbjct: 537 EHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVV 596
Query: 576 AHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNM 635
AHRLST+RNAD+IAV+ KIV+ GSH EL+ +P AY+ L++LQE Q +S+ +
Sbjct: 597 AHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTEDSTDEQKL 656
Query: 636 GRP------------LSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVS 683
R S + F A + E++ +T P K VS
Sbjct: 657 SMESMKRSSLRKSSLSRSLSKRSSSFSMFGFPAGIDTNNEAIPEKDIKVST-PIKEKKVS 715
Query: 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITIL 743
++ ++ +P+ + G+I A++ G +P+F + +S + A++ + + + + I+
Sbjct: 716 FFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFFKPPEQLKSDTRFWAII 775
Query: 744 FCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRL 803
F V +++V + + F I G +L R+R F ++ E+GWFDE +NSS + +RL
Sbjct: 776 FMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDETENSSGAIGARL 835
Query: 804 ESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI-ISGHISEKL 862
+DA +R +V D +QN VTA VIAF+ +W++ +V+A PLI ++G+I K
Sbjct: 836 SADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLPLIGLNGYIYMK- 894
Query: 863 FFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922
F G+ + + Y +A+ +A +AV +IRTVA+FC+E+KV+++Y ++ P + +G +
Sbjct: 895 FMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEGPMRTGIRQGIV 954
Query: 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPD 982
+GI +G+S F +FSSY + + G+ L+ +F SV + F L + A+A+ ++ +L PD
Sbjct: 955 SGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFRVFFALTMAAVAISQSSSLSPD 1014
Query: 983 LLKGNQMAASVFEVLDRKTQV--IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFN 1040
K + AAS+F V+DR++++ + G L NV+G IELR + F YPSRP+V IF+D
Sbjct: 1015 SSKASNAAASIFAVIDRESKIDPSDESGRVLDNVKGDIELRHISFKYPSRPDVQIFQDLC 1074
Query: 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQ 1100
L +RAGK++ALVG+SGSGKSTV++L+ RFYDP +G++ +DG++IK L LK LR+ LV
Sbjct: 1075 LSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKTLQLKWLRQQTGLVS 1134
Query: 1101 QEPALFATSIYENILYGKDG-ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSG 1159
QEP LF +I NI YGK G A+E E++ AA+L+NAH FIS L +GY T VGERGVQLSG
Sbjct: 1135 QEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQGYDTMVGERGVQLSG 1194
Query: 1160 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIK 1219
GQKQRVAIARA++K+P++LLLDEATSALD ESERVVQ AL R+M RTT++VAHRLSTIK
Sbjct: 1195 GQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIK 1254
Query: 1220 NADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
NAD I+V+++G I+E+G H +L+ +DG Y L+ L
Sbjct: 1255 NADVIAVVKNGVIVEKGKHETLINIKDGVYASLVQLH 1291
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/1241 (45%), Positives = 819/1241 (65%), Gaps = 28/1241 (2%)
Query: 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHK 99
+V +KLFAFAD +D++LM LG++G+ +G+ P+ + FG LI+ G + K
Sbjct: 45 TVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGEN---QTNTTDK 101
Query: 100 VAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTG 159
V+K +L FV+L + ++++++S WM +GERQAA++R YL+++L QDI+ FD + +TG
Sbjct: 102 VSKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTG 161
Query: 160 EVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAG 219
EV+ ++ D +++QDA+ EKVG + ++ F+GGF+I F R W ++LV LS +PL+ +AG
Sbjct: 162 EVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAG 221
Query: 220 GMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279
+ A V +R + +Y KA + E+ IG++RTV +F GE +A+ Y + L YK G
Sbjct: 222 ALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGV 281
Query: 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAA 339
G + GLGLG++ V+F S++L VWY ++ GG+ ++ V+ +SLGQ +
Sbjct: 282 IEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTS 341
Query: 340 PDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAI 399
P ++AF +AAAY +FE IER + S G+ LD + G IE KDV F YP+RPD I
Sbjct: 342 PCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQI 401
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
F F L I +G VALVG SGSGKSTV+SLIERFY+P +G++L+DG N+K LKW+R +
Sbjct: 402 FRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSK 461
Query: 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
IGLV+QEP LF +I++NI YGK+DAT EEI AA+L+ A F+ LP+ +T VGE G
Sbjct: 462 IGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGT 521
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
QLSGGQKQRIA++RAI+K+P ILLLDEATSALDAESE VQEALDR+MV RTTVVVAHRL
Sbjct: 522 QLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRL 581
Query: 580 STIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE-------AASQQSNSS-- 630
ST+RNAD+IAV+ KIV+ GSH EL+ +P AY+ L++LQE AA +Q SS
Sbjct: 582 STVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAAEEQKMSSIE 641
Query: 631 -------QCPNMGRPLSIKFSRELSGTRTS---FGASFRSEKESVLSHGAADATEPAT-A 679
+ ++GR LS S + +R S FG + V D T+P T
Sbjct: 642 SFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNMFGFPAGIDGNVVQDQEEDDTTQPKTEP 701
Query: 680 KHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKK 739
K VS ++ ++ +P+ + G+I A G +P+F + +S + A++ + +
Sbjct: 702 KKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQPPKKLKEDTSF 761
Query: 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSIL 799
I+F ++I + + F I G +L R+R F ++ E+GWFDE +NSS +
Sbjct: 762 WAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEPENSSGTI 821
Query: 800 ASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI-ISGHI 858
+RL +DA +R +V D +QN + A +IAF+ W++ VV+A PLI ++G +
Sbjct: 822 GARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPLIALNGFL 881
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918
K F +G+ + K Y +A+ +A +AV +IRTVA+FC+EDKV+ +YS++ P K
Sbjct: 882 YMK-FMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGPMKNGIR 940
Query: 919 RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978
+G ++GI +G S F +FSSY + + G+ L+ +F SV + F L + A+A+ ++ +
Sbjct: 941 QGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAISQSSS 1000
Query: 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDI--GEELTNVEGTIELRGVHFSYPSRPEVVIF 1036
L PD K + AAS+F ++DR++++ + G L NV+G IELR V F YP+RP+V IF
Sbjct: 1001 LSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFKYPARPDVQIF 1060
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096
+D L +RAGK++ALVG+SGSGKSTV++L+ RFYDP +G++ +DG++IK L LK LR+
Sbjct: 1061 QDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLKWLRQQT 1120
Query: 1097 ALVQQEPALFATSIYENILYGKDG-ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGV 1155
LV QEP LF +I NI YGK G ASE E++ +A+L+NAH FIS L +GY T VGERG+
Sbjct: 1121 GLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQGYDTMVGERGI 1180
Query: 1156 QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRL 1215
QLSGGQKQRVAIARA++K+P++LLLDEATSALD ESERVVQ AL R+M RTTI+VAHRL
Sbjct: 1181 QLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRL 1240
Query: 1216 STIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
STIKNAD I+V+++G I+E+G H +L+ +DG Y L+ L
Sbjct: 1241 STIKNADVIAVVKNGVIVEKGKHDTLINIKDGVYASLVQLH 1281
|
Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1065 bits (2753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/1243 (45%), Positives = 817/1243 (65%), Gaps = 35/1243 (2%)
Query: 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHK 99
+V +KLFAFAD D +LM GSIGA +G+S+P + FG LI+ G K ++K
Sbjct: 40 TVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFG------KNQNNK 93
Query: 100 -----VAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT 154
V+K L FVYL + L +++++V+CWM TGERQAA++R YL+++L QDI FD
Sbjct: 94 DIVDVVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDV 153
Query: 155 EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPL 214
E +TGEV+ ++ D +++QDA+ EKVG F+ +S F+GGF++ F + W ++LV L+ +PL
Sbjct: 154 ETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPL 213
Query: 215 IALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNT 274
+A+AG A + +R + +Y KA + E+ IG++RTV +F GE +A+ YK+ +++
Sbjct: 214 LAMAGAAMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSA 273
Query: 275 YKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLS 334
YK + G + GLGLG M V F S++L +W+ ++ + GG ++ VV +S
Sbjct: 274 YKSSIQQGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMS 333
Query: 335 LGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSR 394
LGQ +P +TAF +AAAY +FE I+R + A G+ L+ + G IE KDV F YP+R
Sbjct: 334 LGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPAR 393
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454
PD IFD F L IP+G ALVG SGSGKSTVISLIERFY+P SG +L+DG N+K LK
Sbjct: 394 PDEEIFDGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLK 453
Query: 455 WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV 514
W+R +IGLV+QEP LF+++I ENI YGK++AT+EEI A +L+ A FI LP+ +T V
Sbjct: 454 WIRSKIGLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMV 513
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVV 574
GE G QLSGGQKQRIAI+RAI+K+P ILLLDEATSALDAESE VQEALDRVMV RTTV+
Sbjct: 514 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVI 573
Query: 575 VAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPN 634
VAHRLST+RNAD+IAV+ K+V+ GSH EL+ + AY+ L++LQE ++ +S+ +
Sbjct: 574 VAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQE-INKDVKTSELSS 632
Query: 635 MGRPLSIKFSRELSGTRTSFGASFRSEKESVL---------SHGA-ADATEPATAKH--- 681
+ + + GT +S G S R +VL SH A E TA
Sbjct: 633 GSSFRNSNLKKSMEGT-SSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTASQEPL 691
Query: 682 --VSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKK 739
VS ++ ++ +P+ + GT+ A I GA PLF + +S+ + A++ +R+ +
Sbjct: 692 PKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHELKRDSRF 751
Query: 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSIL 799
I+F V ++IV + F + G +L R+R F + E+ WFDE NSS +
Sbjct: 752 WAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQNSSGTM 811
Query: 800 ASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI-ISGHI 858
+RL +DATL+R +V D ++ +QN + +IAF +W + L+++ PLI I+G +
Sbjct: 812 GARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIGINGFV 871
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918
K F +G+ + Y +A+ +A +AV +IRTVA+FC+E+KV+++Y ++ P K
Sbjct: 872 QVK-FMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIKDGIK 930
Query: 919 RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978
+G I+G+ +G S F +F Y + + G+ L+ +F +V + F L + A+ + ++
Sbjct: 931 QGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGISQSST 990
Query: 979 LVPDLLKGNQMAASVFEVLDRKTQVIG--DIGEELTNVEGTIELRGVHFSYPSRPEVVIF 1036
PD K AAS+F ++DRK+++ + G L NV+G IELR + F+YP+RP++ IF
Sbjct: 991 FAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARPDIQIF 1050
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096
+D L +RAGK++ALVG+SGSGKSTV+SL+ RFYDP +G + +DG+++K+L LK LR+ +
Sbjct: 1051 RDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWLRQQM 1110
Query: 1097 ALVQQEPALFATSIYENILYGK---DGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153
LV QEP LF +I NI YGK + A+E E+I AA+LANAH FIS++ +GY T VGER
Sbjct: 1111 GLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTVVGER 1170
Query: 1154 GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
G+QLSGGQKQRVAIARA++K P+ILLLDEATSALD ESERVVQ AL R+M RTTI+VAH
Sbjct: 1171 GIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAH 1230
Query: 1214 RLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
RLSTIKNAD I+V+++G I E+GTH +L++ E G Y L+ L
Sbjct: 1231 RLSTIKNADVIAVVKNGVIAEKGTHETLIKIEGGVYASLVQLH 1273
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/1276 (43%), Positives = 828/1276 (64%), Gaps = 43/1276 (3%)
Query: 15 NNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPV 74
N ++ + + +SK ++ ++V L+KLFAFAD +D LM GS+GA +GV +P+
Sbjct: 2 NRDGAGEGDSVSHEHSTSKTDEKAKTVPLYKLFAFADSFDVFLMICGSLGAIGNGVCLPL 61
Query: 75 FFIFFGKLINIIGLAYLFPKTASHK-----VAKYSLDFVYLSVAILFSSWIEVSCWMYTG 129
+ FG LI+ G K ++K V+K L FVYL + L +++++V+CWM TG
Sbjct: 62 MTLLFGDLIDSFG------KNQNNKDIVDVVSKVCLKFVYLGLGRLGAAFLQVACWMITG 115
Query: 130 ERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISR 189
ERQAAK+R YL+++L QDI FD E +TGEV+ ++ D + +QDA+ EKVG F+ +S
Sbjct: 116 ERQAAKIRSNYLKTILRQDIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVST 175
Query: 190 FLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIG 249
F+GGF + FA+ W ++LV L+ +P +A+AG A + +R + +Y KA + E+ IG
Sbjct: 176 FVGGFALAFAKGWLLTLVMLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIG 235
Query: 250 NVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV 309
++RTV +F GE +A+ YK+ +++ YK + G + GLGLG M V F S++L +W+
Sbjct: 236 SIRTVASFTGEKQAINSYKKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYALAIWFGGK 295
Query: 310 VVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASS 369
++ + GG ++ VV +SLGQ +P +TAF +AAAY +FE I+R + A
Sbjct: 296 MILEKGYTGGSVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYD 355
Query: 370 KTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL 429
G+ L + G IE KDV F YP+RPD IFD F L IP+G ALVG SGSGKSTVI+L
Sbjct: 356 VNGKVLGDIRGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINL 415
Query: 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489
IERFY+P +GE+L+DG N+K LKW+R +IGLV QEP LF+++I ENI YGK++AT++E
Sbjct: 416 IERFYDPKAGEVLIDGINLKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYGKENATLQE 475
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
I A +L+ A FI+NLP+ +T+VGE G QLSGGQKQRIAI+RAI+K+P +LLLDEATS
Sbjct: 476 IKVATELANAAKFINNLPQGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATS 535
Query: 550 ALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
ALD ESE VQEALDRVMV RTTVVVAHRLST+RNAD+IAV+ K+V+ GSH EL+ +
Sbjct: 536 ALDTESERVVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDS 595
Query: 610 NSAYAALVQLQEAASQQSNSSQCPNMG-----RPLSIKFSRE---LSGTRTSFGASFRSE 661
AY+ L++ QE + + ++ +M R ++ SRE +SG +SFG S R
Sbjct: 596 VGAYSQLIRCQEI--NKGHDAKPSDMASGSSFRNSNLNISREGSVISGGTSSFGNSSRHH 653
Query: 662 KESVLSHGAA---------------DATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAI 706
+VL A T + VS ++ ++ +P+ + GT+ A
Sbjct: 654 SLNVLGLFAGLDLGSGSQRVGQEETGTTSQEPLRKVSLTRIAALNKPEIPVLLLGTVVAA 713
Query: 707 IAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMG 766
I GA PLF + +S+ + A++ D +++ + I+F V ++IV + F + G
Sbjct: 714 INGAIFPLFGILISRVIEAFFKPADQLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAG 773
Query: 767 ERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFG 826
+L R++ F + E+ WFDE +NSS + +RL +DA L+R +V D ++ +QN
Sbjct: 774 GKLIRRIQSMCFEKAVHMEVSWFDEPENSSGTMGARLSTDAALIRALVGDALSLAVQNAA 833
Query: 827 LVTASFVIAFILNWRITLVVVATYPLI-ISGHISEKLFFQGYGGNLSKAYLKANMLAAEA 885
+ +IAF +W + L+++ PLI I+G + K F +G+ + Y +A+ +A +A
Sbjct: 834 SAASGLIIAFTASWELALIILVMLPLIGINGFLQVK-FMKGFSADAKSKYEEASQVANDA 892
Query: 886 VSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYG 945
V +IRTVA+FC+E+KV+++Y+++ P K +G I+G+ +G S F +F Y + +
Sbjct: 893 VGSIRTVASFCAEEKVMQMYNKQCEGPIKDGVKQGFISGLGFGFSFFILFCVYATSFYAA 952
Query: 946 SVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005
+ L+ +F V + F L + A+ + ++ PD K AAS+F ++DRK+++
Sbjct: 953 ARLVEDGKTTFIDVFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDS 1012
Query: 1006 --DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVL 1063
+ G L NV+G IELR + F+YP+RP + IF+D L +RAGK++ALVG+SGSGKSTV+
Sbjct: 1013 SDETGTVLENVKGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVI 1072
Query: 1064 SLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGK---DG 1120
SL+ RFYDP +G++ +DG+++K+L LK LR+ + LV QEP LF +I NI YGK +
Sbjct: 1073 SLLQRFYDPDSGQITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEA 1132
Query: 1121 ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLL 1180
A+E E+I AA+LANAH FIS++ +GY T VGE+G+QLSGGQKQRVAIARA++K P+ILLL
Sbjct: 1133 ATESEIIAAAELANAHKFISSIQQGYDTVVGEKGIQLSGGQKQRVAIARAIVKEPKILLL 1192
Query: 1181 DEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSS 1240
DEATSALD ESER+VQ AL R++ RTT++VAHRLSTIKNAD I+++++G I E GTH +
Sbjct: 1193 DEATSALDAESERLVQDALDRVIVNRTTVVVAHRLSTIKNADVIAIVKNGVIAENGTHET 1252
Query: 1241 LVENEDGAYFKLINLQ 1256
L++ + G Y L+ L
Sbjct: 1253 LIKIDGGVYASLVQLH 1268
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1265 | ||||||
| 224074303 | 1250 | multidrug/pheromone exporter, MDR family | 0.981 | 0.992 | 0.829 | 0.0 | |
| 6671365 | 1249 | P-glycoprotein [Gossypium hirsutum] | 0.980 | 0.992 | 0.828 | 0.0 | |
| 225427157 | 1243 | PREDICTED: ABC transporter B family memb | 0.976 | 0.993 | 0.828 | 0.0 | |
| 356529728 | 1245 | PREDICTED: ABC transporter B family memb | 0.977 | 0.992 | 0.813 | 0.0 | |
| 357485125 | 1234 | ABC transporter B family member [Medicag | 0.973 | 0.998 | 0.812 | 0.0 | |
| 356497653 | 1246 | PREDICTED: ABC transporter B family memb | 0.977 | 0.991 | 0.815 | 0.0 | |
| 297803510 | 1233 | multidrug resistance protein 2 [Arabidop | 0.966 | 0.991 | 0.802 | 0.0 | |
| 224138976 | 1285 | multidrug/pheromone exporter, MDR family | 0.984 | 0.968 | 0.786 | 0.0 | |
| 2108252 | 1233 | P-glycoprotein-2 [Arabidopsis thaliana] | 0.966 | 0.991 | 0.802 | 0.0 | |
| 20466380 | 1233 | P-glycoprotein-2 [Arabidopsis thaliana] | 0.966 | 0.991 | 0.802 | 0.0 |
| >gi|224074303|ref|XP_002304346.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222841778|gb|EEE79325.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2133 bits (5527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1031/1243 (82%), Positives = 1142/1243 (91%), Gaps = 2/1243 (0%)
Query: 17 SSNNNNNNNTED-QESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVF 75
SS N +T+D ++ ++++++R V +KLFAFADFYDY+LM LGS+GACVHG SVPVF
Sbjct: 2 SSLAGNIEDTDDVEKKKEEKKKQRKVPFWKLFAFADFYDYVLMGLGSLGACVHGASVPVF 61
Query: 76 FIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAK 135
FIFFGKLINIIGLAYLFPK ASH+V KYSLDFVYLSV ILF+SWIEV+CWM+TGERQAAK
Sbjct: 62 FIFFGKLINIIGLAYLFPKEASHRVGKYSLDFVYLSVVILFASWIEVACWMHTGERQAAK 121
Query: 136 MRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFI 195
MRMAYL+SML+QDISLFDTEASTGEVI+AITSDIIVVQDA+SEKVGNFMHYISRFLGGFI
Sbjct: 122 MRMAYLKSMLSQDISLFDTEASTGEVIAAITSDIIVVQDAISEKVGNFMHYISRFLGGFI 181
Query: 196 IGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQ 255
IGF R+WQISLVTLSIVPLIALAGG+YAY+TIGLIA+VRKSYVKA ++AEEVIGNVRTVQ
Sbjct: 182 IGFVRIWQISLVTLSIVPLIALAGGIYAYITIGLIAKVRKSYVKASQVAEEVIGNVRTVQ 241
Query: 256 AFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHI 315
AF GE+KAV+ Y EAL TYKYGRKAGLAKGLGLG++HCVLFLSW+LLVWY S+VVHK+I
Sbjct: 242 AFTGEEKAVRSYIEALRKTYKYGRKAGLAKGLGLGTLHCVLFLSWALLVWYTSIVVHKNI 301
Query: 316 SNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKL 375
+NGGESFTTMLNVVI+GLSLG AAPDI++F+ A AAAYPIFEMIE++TMSK SS++GRK+
Sbjct: 302 ANGGESFTTMLNVVISGLSLGMAAPDISSFLHATAAAYPIFEMIEKNTMSKISSESGRKV 361
Query: 376 DKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435
D++ GHIEFKDV F YPSRPDV IFDKFCLDIP+GKIVALVGGSGSGKSTVISLIERFY+
Sbjct: 362 DRVDGHIEFKDVCFRYPSRPDVTIFDKFCLDIPSGKIVALVGGSGSGKSTVISLIERFYD 421
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAK 495
PL G+ILLDGN+I+ LDLKWLRQQIGLVNQEPALFAT+IRENILYGKDDAT+EEITRAAK
Sbjct: 422 PLFGKILLDGNDIRDLDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEEITRAAK 481
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
LS AMSFI+NLP++FETQVGERGIQLSGGQKQRIA+SRAIVKNPSILLLDEATSALDAES
Sbjct: 482 LSGAMSFINNLPDKFETQVGERGIQLSGGQKQRIALSRAIVKNPSILLLDEATSALDAES 541
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
E SVQEA+DR +VGRTTVVVAHRLSTIRNADVIAVVQ KIV+ GSHEELISNP S YA+
Sbjct: 542 EKSVQEAIDRAIVGRTTVVVAHRLSTIRNADVIAVVQEGKIVEIGSHEELISNPQSTYAS 601
Query: 616 LVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATE 675
LV LQEAAS Q + S P +GRPLS+K+SRELS TR+SFG SF S+K+SV S DA E
Sbjct: 602 LVHLQEAASLQRHPSHGPTLGRPLSMKYSRELSHTRSSFGTSFHSDKDSV-SRVGGDALE 660
Query: 676 PATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQR 735
K+VS +LYSMV PDW YGV GT+ A IAG+ MPLFALGVSQALVAYYMDWDTT+
Sbjct: 661 STRTKNVSLKRLYSMVGPDWIYGVLGTMGAFIAGSAMPLFALGVSQALVAYYMDWDTTRH 720
Query: 736 EVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNS 795
EVKKI ILFCC A I+VIV+AIEHLSFGIMGERLTLRVRE MFSAIL NEIGWFD+++N+
Sbjct: 721 EVKKIAILFCCGAAISVIVYAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDLNNT 780
Query: 796 SSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIIS 855
SS+L SRLESDATLLRTIVVDRSTIL+QN GLV SF+IAF LNWRITLVV+ATYPLIIS
Sbjct: 781 SSMLTSRLESDATLLRTIVVDRSTILLQNVGLVVTSFIIAFTLNWRITLVVIATYPLIIS 840
Query: 856 GHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKR 915
GHISEKLF +GYGGNLSKAYLKANMLA EAVSNIRTVAAFC+E+K+L+LY+RELVEPSK
Sbjct: 841 GHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKILDLYARELVEPSKN 900
Query: 916 SFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGE 975
SF RGQIAGIFYGI QFFIFSSYGLALWYGSVLM KELA FKS+MKSFMVLIVTALAMGE
Sbjct: 901 SFTRGQIAGIFYGICQFFIFSSYGLALWYGSVLMEKELAGFKSIMKSFMVLIVTALAMGE 960
Query: 976 TLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVI 1035
TLAL PDLLKGN MAASVFE+LDRKTQV+GD+GEEL NVEGTIELRGV FSYPSRP+ +I
Sbjct: 961 TLALAPDLLKGNHMAASVFEILDRKTQVMGDVGEELKNVEGTIELRGVQFSYPSRPDALI 1020
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095
FKDF+L+VR+GKSMALVGQSGSGKS+VLSLILRFYDPTAGKVM+DGIDIK L +KSLRKH
Sbjct: 1021 FKDFDLRVRSGKSMALVGQSGSGKSSVLSLILRFYDPTAGKVMIDGIDIKELKVKSLRKH 1080
Query: 1096 IALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGV 1155
I LVQQEPALFATSIYENILYGK+GASE EVIEAAKLANAHSFIS+LPEGYSTKVGERGV
Sbjct: 1081 IGLVQQEPALFATSIYENILYGKEGASEAEVIEAAKLANAHSFISSLPEGYSTKVGERGV 1140
Query: 1156 QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRL 1215
QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER+VQQAL RLMR RTT++VAHRL
Sbjct: 1141 QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMRNRTTVVVAHRL 1200
Query: 1216 STIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQR 1258
STIKNADQIS+I+ GKIIEQGTHSSLVEN+DGAYFKL+ LQQ+
Sbjct: 1201 STIKNADQISIIQEGKIIEQGTHSSLVENKDGAYFKLVRLQQQ 1243
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6671365|gb|AAF23176.1|AF216497_1 P-glycoprotein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 2133 bits (5526), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1038/1253 (82%), Positives = 1154/1253 (92%), Gaps = 13/1253 (1%)
Query: 3 TPAVGSFPVNDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGS 62
TP+ GSF + + +D +++KK++++R V L KLF+FADFYD++LM LGS
Sbjct: 2 TPSAGSF------------SGDRDDDGDATKKKKKQRKVPLLKLFSFADFYDHVLMGLGS 49
Query: 63 IGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122
+GACVHG SVPVFFIFFGKLINIIG+AYLFPK ASHKVAKYSLDFVYLSVAILFSSWIEV
Sbjct: 50 LGACVHGASVPVFFIFFGKLINIIGMAYLFPKEASHKVAKYSLDFVYLSVAILFSSWIEV 109
Query: 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182
+CWM+TGERQAAKMRMAYL+SMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN
Sbjct: 110 ACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 169
Query: 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGE 242
FMHYISRF+ GF IGFARVWQISLVTLSIVPLIALAGG+YAYV GLIARVR SYVKAGE
Sbjct: 170 FMHYISRFIAGFSIGFARVWQISLVTLSIVPLIALAGGIYAYVATGLIARVRNSYVKAGE 229
Query: 243 IAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSL 302
IAEEVIGNVRTVQAFAGE++AVK YK+AL NTY YG+KAGL KGLGLGS+HCVLF+SW+L
Sbjct: 230 IAEEVIGNVRTVQAFAGEERAVKSYKDALMNTYTYGKKAGLTKGLGLGSLHCVLFVSWAL 289
Query: 303 LVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362
LVW+ S+VVHK+I+NGG+SFTTMLNVVI+GLSLGQAAPDI+AFIRA+AAAYPIFEMIER+
Sbjct: 290 LVWFTSIVVHKNIANGGDSFTTMLNVVISGLSLGQAAPDISAFIRARAAAYPIFEMIERN 349
Query: 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSG 422
T+SK SSKTGRKL K+ G+IE K+VSF YPSRPDV IFD+FCL+IP GKIVALVGGSGSG
Sbjct: 350 TVSKTSSKTGRKLSKVEGNIELKNVSFSYPSRPDVVIFDRFCLNIPTGKIVALVGGSGSG 409
Query: 423 KSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK 482
KSTVISLIERFYEPL+GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK
Sbjct: 410 KSTVISLIERFYEPLAGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK 469
Query: 483 DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542
DDAT++EITRAAKLSEA++FI+NLP+RFETQVGERGIQLSGGQKQRIAISRAIVKNP IL
Sbjct: 470 DDATVDEITRAAKLSEAIAFINNLPDRFETQVGERGIQLSGGQKQRIAISRAIVKNPPIL 529
Query: 543 LLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602
LLDEATSALDAESE SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ KIV+TG+H
Sbjct: 530 LLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQNGKIVETGTH 589
Query: 603 EELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEK 662
+ELISNPNS Y++LVQ QE + Q SQ P + RPLS+ +SRELS TRTSFGASFRSE+
Sbjct: 590 DELISNPNSTYSSLVQHQETSPLQRYPSQGPTLSRPLSVSYSRELSRTRTSFGASFRSER 649
Query: 663 ESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQA 722
+SV S AD + +VS +LYSM+ PDW YG GT+ A+IAGAQMPLFALGVSQA
Sbjct: 650 DSV-SRAGADGIDAGKQPYVSPGRLYSMIGPDWYYGFFGTVTALIAGAQMPLFALGVSQA 708
Query: 723 LVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAIL 782
LVAYYMDW+TT EVKKI ILFCCA+VITVIVHAIEHL FGIMGERLTLRVRE MFSAIL
Sbjct: 709 LVAYYMDWETTCHEVKKIAILFCCASVITVIVHAIEHLCFGIMGERLTLRVREGMFSAIL 768
Query: 783 SNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842
NEIGWFD+++N+SS+LASRLE+DAT LR +VVDR++ILIQN GLV A+F+IAFILNWRI
Sbjct: 769 KNEIGWFDDLNNASSMLASRLETDATFLRGVVVDRTSILIQNVGLVIAAFIIAFILNWRI 828
Query: 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVL 902
TL+++AT+PLIISGHISEKLF QGYGGNLSKAYLKANM+A EAVSN+RTVAAFC+E+K+L
Sbjct: 829 TLIILATFPLIISGHISEKLFMQGYGGNLSKAYLKANMIAGEAVSNMRTVAAFCAEEKIL 888
Query: 903 ELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS 962
+LY+REL+EPS+RSF RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS
Sbjct: 889 DLYARELIEPSERSFKRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS 948
Query: 963 FMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRG 1022
FMVLIVTALAMGETLALVPDLLKGNQM ASVFE++DRKTQV+GD GEELTNVEGTIEL+G
Sbjct: 949 FMVLIVTALAMGETLALVPDLLKGNQMVASVFEIMDRKTQVVGDAGEELTNVEGTIELKG 1008
Query: 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI 1082
VHFSYPSRP+VVIFKDF+LKVR+GKSMALVGQSGSGKS+VL+LILRFYDPT+GKVM+DG
Sbjct: 1009 VHFSYPSRPDVVIFKDFDLKVRSGKSMALVGQSGSGKSSVLALILRFYDPTSGKVMIDGR 1068
Query: 1083 DIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISAL 1142
D+K+L LKSLRKHI LVQQEPALFATSIYENILYGK+GASE EV+EAAKLANAHSFIS+L
Sbjct: 1069 DVKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASESEVVEAAKLANAHSFISSL 1128
Query: 1143 PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRL 1202
PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL RL
Sbjct: 1129 PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRL 1188
Query: 1203 MRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINL 1255
MR RTT++VAHRLSTIKNAD+ISVI+ G+IIEQGTHSSL+EN +G YFKLINL
Sbjct: 1189 MRNRTTVMVAHRLSTIKNADRISVIQGGRIIEQGTHSSLIENRNGPYFKLINL 1241
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Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225427157|ref|XP_002277547.1| PREDICTED: ABC transporter B family member 2 [Vitis vinifera] gi|297742073|emb|CBI33860.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2098 bits (5435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1024/1236 (82%), Positives = 1135/1236 (91%), Gaps = 1/1236 (0%)
Query: 20 NNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFF 79
+ N + ++ ++ ++ R V L KLFAFAD YD LM++GS+GAC+HG SVPVFFIFF
Sbjct: 2 DGPNPFSGQKKEGEEGKKPRRVPLLKLFAFADLYDCFLMAVGSVGACIHGASVPVFFIFF 61
Query: 80 GKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMA 139
GKLI+IIGLAYLFP ASHKVAKYSLDFVYLS+ ILFSSW EV+CWM+TGERQAAKMRMA
Sbjct: 62 GKLIDIIGLAYLFPAAASHKVAKYSLDFVYLSLVILFSSWAEVACWMHTGERQAAKMRMA 121
Query: 140 YLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199
Y+RSMLNQDISLFDTEA+TGEVISAITSDIIVVQDALSEKVGNFMHYISRF+ GF IGF
Sbjct: 122 YVRSMLNQDISLFDTEATTGEVISAITSDIIVVQDALSEKVGNFMHYISRFIAGFAIGFI 181
Query: 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAG 259
RVWQISLVTL+IVPLIA+AGG+YAY+ GLIARVRKSYVKAGEIAEEVIGNVRTVQAFAG
Sbjct: 182 RVWQISLVTLAIVPLIAIAGGVYAYIATGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAG 241
Query: 260 EDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGG 319
E+KAVK+YK ALSNTY YGRKAGLAKGLGLGSMHCVLFLSW+LLVW+ SVVVHK+I+NGG
Sbjct: 242 EEKAVKLYKTALSNTYIYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKNIANGG 301
Query: 320 ESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLS 379
ESFTTMLNVVIAGLSLGQAAPDI+AFIRAKA+AYPIFEMIER+T+S +SKTGR+L KL
Sbjct: 302 ESFTTMLNVVIAGLSLGQAAPDISAFIRAKASAYPIFEMIERNTISNTNSKTGRQLHKLE 361
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
GHI+F+D+SF YPSRPD+ IF+K C DIP+GKIVALVGGSGSGKSTVISLIERFYEPL+G
Sbjct: 362 GHIQFRDISFSYPSRPDILIFNKLCFDIPSGKIVALVGGSGSGKSTVISLIERFYEPLAG 421
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
EILLDGN+I+ LDL+WLRQQIGLVNQEPALFAT+IRENILYGKDDAT++EITRAAKLSEA
Sbjct: 422 EILLDGNDIRQLDLQWLRQQIGLVNQEPALFATSIRENILYGKDDATLDEITRAAKLSEA 481
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+SFI+NLP+R+ETQVGERGIQLSGGQKQRIAI+RAIVKNPSILLLDEATSALDAESE SV
Sbjct: 482 ISFINNLPDRYETQVGERGIQLSGGQKQRIAIARAIVKNPSILLLDEATSALDAESEKSV 541
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619
QEALDRVMVGRTTVVVAHRLSTIRNAD+IAVVQ KIV+TGSHEELISNP+SAYA+LVQL
Sbjct: 542 QEALDRVMVGRTTVVVAHRLSTIRNADMIAVVQHGKIVETGSHEELISNPSSAYASLVQL 601
Query: 620 QEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATA 679
QE AS + + SQ P MGRPLS+K SRELS T TSFGASF S++ESV G A+ EP +
Sbjct: 602 QETASLKRHPSQGPTMGRPLSMKCSRELSRTTTSFGASFHSDRESVGRIG-AEGVEPVKS 660
Query: 680 KHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKK 739
K VSA +LYSMV PDW YG+ GTICA+IAGAQMPLFALGV++ALV+YYMDWDTT+ +VKK
Sbjct: 661 KQVSARRLYSMVGPDWYYGLVGTICALIAGAQMPLFALGVTEALVSYYMDWDTTRHQVKK 720
Query: 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSIL 799
I LFC A ITVIVHAIEH FGIMGERLTLR+RE +FSAIL NEIGWFD+ +N+SS+L
Sbjct: 721 IAFLFCGGAFITVIVHAIEHTCFGIMGERLTLRIREMLFSAILGNEIGWFDDANNTSSML 780
Query: 800 ASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIS 859
+SRLESDATL RTI+VDRSTILIQN GLV SF+IAFILNWRITLVV+ATYPLIISGHIS
Sbjct: 781 SSRLESDATLFRTIIVDRSTILIQNLGLVVTSFIIAFILNWRITLVVLATYPLIISGHIS 840
Query: 860 EKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIR 919
EKLF QGYGGNLSKAYLKANM+A EAVSN+RTVAAFCSE+KVL+LYSRELVEP+ +SF R
Sbjct: 841 EKLFMQGYGGNLSKAYLKANMIAGEAVSNMRTVAAFCSEEKVLDLYSRELVEPANKSFTR 900
Query: 920 GQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLAL 979
GQIAG+FYGISQFFIFSSYGLALWYGS+LMGKELASFKSVMKSFMVLIVTALAMGETLAL
Sbjct: 901 GQIAGLFYGISQFFIFSSYGLALWYGSILMGKELASFKSVMKSFMVLIVTALAMGETLAL 960
Query: 980 VPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDF 1039
PDLLKGNQM ASVFE++DRKT+V+GD GEELT VEGTI+L+G+ F YPSRP+VVIFKDF
Sbjct: 961 APDLLKGNQMVASVFELMDRKTEVMGDAGEELTRVEGTIDLKGIEFRYPSRPDVVIFKDF 1020
Query: 1040 NLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALV 1099
+L+VRAGKSMALVGQSGSGKS+VLSLILRFYDP AGKVM+DG DIK+L LKSLRKHI LV
Sbjct: 1021 DLRVRAGKSMALVGQSGSGKSSVLSLILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLV 1080
Query: 1100 QQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSG 1159
QQEPALFATSI+ENILYGK+GASE EV+EAAKLANAHSFI LPEGYSTKVGERGVQLSG
Sbjct: 1081 QQEPALFATSIFENILYGKEGASEAEVMEAAKLANAHSFICGLPEGYSTKVGERGVQLSG 1140
Query: 1160 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIK 1219
GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL RLM RTT++VAHRLSTIK
Sbjct: 1141 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMVNRTTVLVAHRLSTIK 1200
Query: 1220 NADQISVIESGKIIEQGTHSSLVENEDGAYFKLINL 1255
NADQISVI+ GKIIEQGTHS+LVEN +GAYFKLINL
Sbjct: 1201 NADQISVIQDGKIIEQGTHSTLVENREGAYFKLINL 1236
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529728|ref|XP_003533440.1| PREDICTED: ABC transporter B family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2090 bits (5416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1008/1239 (81%), Positives = 1130/1239 (91%), Gaps = 3/1239 (0%)
Query: 21 NNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFG 80
+ ++ +D +S+KK+ + VSL KLF+FADFYDY+LM +GS+GA VHG SVPVFFIFFG
Sbjct: 8 SGDSAMDDAKSNKKEHK---VSLLKLFSFADFYDYVLMGVGSVGAIVHGASVPVFFIFFG 64
Query: 81 KLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAY 140
KLIN+IGLAYLFPK ASHKVAKYSLDFVYLS+AILFSSW EV+CWM+TGERQAAKMRMAY
Sbjct: 65 KLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAY 124
Query: 141 LRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200
L+SMLNQDISLFDTEASTGEVISAITSDII+VQDALSEKVGNFMHYISRF+ GF+IGF R
Sbjct: 125 LKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFVAGFVIGFVR 184
Query: 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE 260
VWQISLVTLSIVPLIALAGG+YAYVTIGLIA+VRK+YV+AGEIAEEVIGNVRTVQAFAGE
Sbjct: 185 VWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGE 244
Query: 261 DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE 320
++AV+ YK AL TY GRKAGLAKGLGLGSMHCVLFLSWSLLVW+ S+VVHK+I+NGGE
Sbjct: 245 ERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGE 304
Query: 321 SFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380
SFTTMLNVVIAGLSLGQAAPDI+AFIRAKAAAYPIFEMIER+T+SK+SSKTGRKL KL G
Sbjct: 305 SFTTMLNVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERETVSKSSSKTGRKLGKLEG 364
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
HI+FK+V F YPSRPDVAIF+ CLDIP+GKI+ALVGGSGSGKSTVISLIERFYEP+SG+
Sbjct: 365 HIQFKNVCFSYPSRPDVAIFNNLCLDIPSGKIIALVGGSGSGKSTVISLIERFYEPISGQ 424
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
ILLD N+I+ LDLKWLRQQIGLVNQEPALFAT+I+ENILYGKDDAT+EE+ RA KLS+A
Sbjct: 425 ILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQ 484
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FI+NLP+R ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQ
Sbjct: 485 PFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQ 544
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
EALDRVMVGRTTVVVAHRLSTIRNAD+IAVVQG KIV+TG+HEEL++NP S YA+LVQLQ
Sbjct: 545 EALDRVMVGRTTVVVAHRLSTIRNADMIAVVQGGKIVETGNHEELMANPTSVYASLVQLQ 604
Query: 621 EAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAK 680
EAAS S P+MG SI +SRELS T TS G SFRS+KES+ A + +
Sbjct: 605 EAASLHRLPSIGPSMGCQPSITYSRELSRTTTSLGGSFRSDKESIGRVCAEETENAGKKR 664
Query: 681 HVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKI 740
HVSA +LYSMV PDW YGV GT+CA IAGAQMPLFALG+S ALV+YYMDW+TT EVKKI
Sbjct: 665 HVSAARLYSMVGPDWFYGVAGTLCAFIAGAQMPLFALGISHALVSYYMDWETTCHEVKKI 724
Query: 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILA 800
LFC AAVITV VHAIEHLSFGIMGERLTLRVRE MFSAIL NEIGWFD+ +N+SS+L+
Sbjct: 725 AFLFCGAAVITVTVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLS 784
Query: 801 SRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISE 860
S+LE+DATLLRTIVVDRSTIL+QN GLV ASF+IAFILNWRITLVV+ATYPL+ISGHISE
Sbjct: 785 SQLETDATLLRTIVVDRSTILLQNIGLVIASFIIAFILNWRITLVVIATYPLVISGHISE 844
Query: 861 KLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRG 920
KLF +GYGGNLSKAYLKANMLA EAVSNIRTVAAFCSE+KVL+LY+ ELV+PSKRS RG
Sbjct: 845 KLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSLQRG 904
Query: 921 QIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALV 980
QIAGIFYGISQFFIFSSYGLALWYGSVLM KELASFKS+MK+F VLIVTALAMGETLAL
Sbjct: 905 QIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKAFFVLIVTALAMGETLALA 964
Query: 981 PDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFN 1040
PDLLKGNQM ASVFEV+DRK+ + D+GEEL V+GTIEL+ ++FSYPSRP+V+IFKDFN
Sbjct: 965 PDLLKGNQMVASVFEVMDRKSGISCDVGEELKTVDGTIELKRINFSYPSRPDVIIFKDFN 1024
Query: 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQ 1100
L+V AGKS+ALVGQSGSGKS+V+SLILRFYDPT+G+V++DG DI RLNLKSLR+HI LVQ
Sbjct: 1025 LRVPAGKSVALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKDITRLNLKSLRRHIGLVQ 1084
Query: 1101 QEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160
QEPALFATSIYENILYGK+GAS+ EVIEAAKLANAH+FIS LPEGYSTKVGERGVQLSGG
Sbjct: 1085 QEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGG 1144
Query: 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN 1220
Q+QRVAIARAVLKNPEILLLDEATSALDVESER+VQQAL RLM+ RTTI+VAHRLSTI+N
Sbjct: 1145 QRQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTIMVAHRLSTIRN 1204
Query: 1221 ADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQ 1259
ADQISV++ GKII+QGTHSSL+EN++GAY+KL+NLQQ+
Sbjct: 1205 ADQISVLQDGKIIDQGTHSSLIENKNGAYYKLVNLQQQH 1243
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485125|ref|XP_003612850.1| ABC transporter B family member [Medicago truncatula] gi|355514185|gb|AES95808.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2083 bits (5396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1004/1236 (81%), Positives = 1126/1236 (91%), Gaps = 4/1236 (0%)
Query: 27 EDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINII 86
E +E +++++ + VS+ KLF+FAD YDY+LM +GSIGA VHG SVP+FFIFFGKLIN+I
Sbjct: 2 ESKEGDERKKEHK-VSMLKLFSFADSYDYVLMFIGSIGAIVHGASVPIFFIFFGKLINVI 60
Query: 87 GLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLN 146
GLAYLFPK ASHKVAKYSLDFVYLSVAILFSSW EV+CWM+TGERQAAKMRMAYL+SMLN
Sbjct: 61 GLAYLFPKEASHKVAKYSLDFVYLSVAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLN 120
Query: 147 QDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISL 206
QDISLFDTEASTGEVISAITSDII+VQDALSEKVGNF+HYISRF+ GF IGF RVWQISL
Sbjct: 121 QDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFLHYISRFIAGFTIGFVRVWQISL 180
Query: 207 VTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKV 266
VTLSIVP IALAGG YAYVTIGLIA+VRK+YV+AGEIAEEVIGNVRTVQAFAGE++AV+
Sbjct: 181 VTLSIVPAIALAGGCYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRS 240
Query: 267 YKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTML 326
YK AL TY GRKAGLAKGLGLGSMHCVLFLSW+LLVWY SVVVHK+I+NGGESFTTML
Sbjct: 241 YKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWYTSVVVHKNIANGGESFTTML 300
Query: 327 NVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKD 386
NVVI+GLSLGQAAPDI+AFIRAKAAAYPIFEMIERDT+SK SSKTGRKL KL GHI+F D
Sbjct: 301 NVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKKSSKTGRKLSKLDGHIQFND 360
Query: 387 VSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN 446
V F YPSRPDV IF LDIPAGKIVALVGGSGSGKSTV+SLIERFYEP+SG+ILLD N
Sbjct: 361 VCFSYPSRPDVGIFTNLNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKN 420
Query: 447 NIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNL 506
+I+ LDLKWLRQQIGLVNQEPALFAT+I+ENILYGKDDAT+EE+ RA KLS+A SFI+NL
Sbjct: 421 DIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNL 480
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
PER +TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQEALDRV
Sbjct: 481 PERLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRV 540
Query: 567 MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQ 626
MVGRTT+VVAHRLSTIRNADVIAVVQG +IV+TG+HE+L+SNP S YA+LVQLQ A+S Q
Sbjct: 541 MVGRTTIVVAHRLSTIRNADVIAVVQGGRIVETGNHEKLMSNPTSVYASLVQLQGASSLQ 600
Query: 627 SNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIK 686
S P++GR SI +SRELS T TS G SFRS+K+S+ G D ++ +KHVSA +
Sbjct: 601 RLPSVGPSLGRQSSISYSRELSRTGTSIGGSFRSDKDSIGRVGGDDVSK---SKHVSAKR 657
Query: 687 LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCC 746
LYSM+ PDW YG GT+CA +AGAQMPLFALG+S ALV+YYMDW+TTQREV+KI LFC
Sbjct: 658 LYSMIGPDWPYGFFGTLCAFVAGAQMPLFALGISHALVSYYMDWETTQREVRKIAFLFCG 717
Query: 747 AAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESD 806
AVIT+ VHAIEHL FGIMGERLTLRVRE MF+AIL NEIGWFDE N+SS+L+SRLESD
Sbjct: 718 GAVITITVHAIEHLFFGIMGERLTLRVREMMFTAILKNEIGWFDETTNTSSMLSSRLESD 777
Query: 807 ATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQG 866
ATL+RTIVVDRSTIL+QN GLV ASF+IAF+LNWRITLVV+ATYPLIISGHISEKLF +G
Sbjct: 778 ATLMRTIVVDRSTILLQNLGLVVASFIIAFLLNWRITLVVLATYPLIISGHISEKLFMKG 837
Query: 867 YGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIF 926
YGGNLSKAYLKANMLA EAVSNIRTVAAFCSE+K+L+LY+ +LV PSK SF RGQIAG+F
Sbjct: 838 YGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKILDLYADQLVGPSKHSFRRGQIAGLF 897
Query: 927 YGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKG 986
YGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLAL PDLLKG
Sbjct: 898 YGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKG 957
Query: 987 NQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAG 1046
NQM ASVFEV+DRK+++ GD GEEL VEGTIEL+ ++FSYPSRP+V+IFKDF+L+V +G
Sbjct: 958 NQMVASVFEVMDRKSEIKGDAGEELKTVEGTIELKRINFSYPSRPDVIIFKDFSLRVPSG 1017
Query: 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALF 1106
KS+ALVGQSGSGKS+V+SLILRFYDPT+GKV++DG DI R+NLKSLRKHI LVQQEPALF
Sbjct: 1018 KSVALVGQSGSGKSSVISLILRFYDPTSGKVLIDGKDITRINLKSLRKHIGLVQQEPALF 1077
Query: 1107 ATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166
ATSIYENILYGK+GAS+ EVIEAAKLANAH+FISALPEGYSTKVGERGVQLSGGQ+QRVA
Sbjct: 1078 ATSIYENILYGKEGASDSEVIEAAKLANAHNFISALPEGYSTKVGERGVQLSGGQRQRVA 1137
Query: 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISV 1226
IARAVLKNPEILLLDEATSALDVESER+VQQAL RLM+ RTT++VAHRLSTI+NADQISV
Sbjct: 1138 IARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTVMVAHRLSTIRNADQISV 1197
Query: 1227 IESGKIIEQGTHSSLVENEDGAYFKLINLQQRQDPQ 1262
++ GKIIEQGTHSSL+EN+DG Y+KL+NLQQ+Q+ Q
Sbjct: 1198 LQDGKIIEQGTHSSLIENKDGPYYKLVNLQQQQNHQ 1233
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497653|ref|XP_003517674.1| PREDICTED: ABC transporter B family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2078 bits (5385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1010/1239 (81%), Positives = 1133/1239 (91%), Gaps = 3/1239 (0%)
Query: 21 NNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFG 80
+ ++ +D +S+KK+ + VSL KLF+FADFYDY+LM +GS+GA VHG SVPVFFIFFG
Sbjct: 8 SGDSAVDDAKSNKKEHK---VSLLKLFSFADFYDYVLMGVGSVGAIVHGASVPVFFIFFG 64
Query: 81 KLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAY 140
KLIN+IGLAYLFPK ASHKVAKYSLDFVYLS+AILFSSW EV+CWM+TGERQAAKMRMAY
Sbjct: 65 KLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAY 124
Query: 141 LRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200
L+SMLNQDISLFDTEASTGEVIS+ITSDII+VQDALSEKVGNFMHYISRF+ GF+IGF R
Sbjct: 125 LKSMLNQDISLFDTEASTGEVISSITSDIIIVQDALSEKVGNFMHYISRFVAGFVIGFVR 184
Query: 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE 260
VWQISLVTLSIVPLIALAGG+YAYVTIGLIA+VRK+YV+AGEIAEEVIGNVRTVQAFAGE
Sbjct: 185 VWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGE 244
Query: 261 DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE 320
++AV+ YK AL TY GRKAGLAKGLGLGSMHCVLFLSWSLLVW+ S+VVHK+I+NGGE
Sbjct: 245 ERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGE 304
Query: 321 SFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380
SFTTMLNVVIAGLSLGQAAPDI+AFIRAKAAAYPIFEMIERDT+SK+SSKTGRKL KL G
Sbjct: 305 SFTTMLNVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKSSSKTGRKLGKLEG 364
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
HI+FK++ F YPSRPDVAIF+ CLDIP+GKIVALVGGSGSGKSTVISLIERFYEPLSG+
Sbjct: 365 HIQFKNICFSYPSRPDVAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQ 424
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
ILLD N+I+ LDLKWLRQQIGLVNQEPALFAT+I+ENILYGKDDAT+EE+ RA KLS+A
Sbjct: 425 ILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQ 484
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
SFI+NLP+R ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQ
Sbjct: 485 SFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQ 544
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
EALDRVMVGRTTVVVAHRLSTIRNAD+IAVVQG KIV+TG+HEEL++NP S YA+LVQLQ
Sbjct: 545 EALDRVMVGRTTVVVAHRLSTIRNADMIAVVQGGKIVETGNHEELMANPTSVYASLVQLQ 604
Query: 621 EAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAK 680
EAAS S P+MGR SI +SRELS T TS G SFRS+KES+ A + +
Sbjct: 605 EAASLHRLPSIGPSMGRQPSITYSRELSRTTTSLGGSFRSDKESIGRVCAEETENAGKKR 664
Query: 681 HVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKI 740
HVSA +LYSMV PDW YGV GT+CA IAGAQMPLFALG+S ALV+YYMDW+TT EVKKI
Sbjct: 665 HVSAARLYSMVGPDWFYGVAGTLCAFIAGAQMPLFALGISHALVSYYMDWETTCHEVKKI 724
Query: 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILA 800
LFC AAVITV VHAIEHLSFGIMGERLTLRVRE MFSAIL NEIGWFD+ +N+SS+L+
Sbjct: 725 AFLFCGAAVITVTVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLS 784
Query: 801 SRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISE 860
S+LE+DATLLRTIVVDRSTIL+QN GLV ASF++AFILNWRITLVV+ATYPLIISGHISE
Sbjct: 785 SQLETDATLLRTIVVDRSTILLQNIGLVVASFIVAFILNWRITLVVIATYPLIISGHISE 844
Query: 861 KLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRG 920
KLF +GYGGNLSKAYLKANMLA EAVSNIRTVAAFCSE+KVL+LY+ ELV+PSKRS RG
Sbjct: 845 KLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSLQRG 904
Query: 921 QIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALV 980
QIAGIFYGISQFFIFSSYGLALWYGSVLM KELASFKS+MK+F VLIVTALAMGETLAL
Sbjct: 905 QIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKAFFVLIVTALAMGETLALA 964
Query: 981 PDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFN 1040
PDLLKGNQM ASVFEV+DRK+ + ++GEEL V+GTIEL+ ++FSYPSRP+V+IFKDFN
Sbjct: 965 PDLLKGNQMVASVFEVMDRKSGISCEVGEELKTVDGTIELKRINFSYPSRPDVIIFKDFN 1024
Query: 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQ 1100
L+V AGKS+ALVGQSGSGKS+V+SLILRFYDPT+G+V++DG DI RLNLKSLR+HI LVQ
Sbjct: 1025 LRVPAGKSVALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKDITRLNLKSLRRHIGLVQ 1084
Query: 1101 QEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160
QEPALFATSIYENILYGK+GAS+ EVIEAAKLANAH+FIS LPEGYSTKVGERGVQLSGG
Sbjct: 1085 QEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGG 1144
Query: 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN 1220
Q+QRVAIARAVLKNPEILLLDEATSALDVESER+VQQAL RLM+ RTT++VAHRLSTI+N
Sbjct: 1145 QRQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTVMVAHRLSTIRN 1204
Query: 1221 ADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQ 1259
ADQISV++ GKII+QGTHSSL+EN++GAY+KL+NLQQ+Q
Sbjct: 1205 ADQISVLQDGKIIDQGTHSSLIENKNGAYYKLVNLQQQQ 1243
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803510|ref|XP_002869639.1| multidrug resistance protein 2 [Arabidopsis lyrata subsp. lyrata] gi|297315475|gb|EFH45898.1| multidrug resistance protein 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2061 bits (5341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1229 (80%), Positives = 1113/1229 (90%), Gaps = 7/1229 (0%)
Query: 33 KKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLF 92
+K+ ++ VSL KLF+FADFYD +LM+LGS+GAC+HG SVP+FFIFFGKLINIIGLAYLF
Sbjct: 12 EKEMKQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLF 71
Query: 93 PKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLF 152
PK ASH+VAKYSLDFVYLSVAILFSSW+EV+CWM+TGERQAAKMR AYLRSML+QDISLF
Sbjct: 72 PKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLF 131
Query: 153 DTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIV 212
DTEASTGEVISAITSDI+VVQDALSEKVGNF+HYISRF+ GF IGF VWQISLVTLSIV
Sbjct: 132 DTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIV 191
Query: 213 PLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALS 272
PLIALAGG+YA+V IGLIARVRKSY+KAGEIAEEVIGNVRTVQAF GE++AV++Y+EAL
Sbjct: 192 PLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALE 251
Query: 273 NTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAG 332
NTYKYGRKAGL KGLGLGSMHCVLFLSW+LLVW+ SVVVHK I+NGG+SFTTMLNVVIAG
Sbjct: 252 NTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIANGGKSFTTMLNVVIAG 311
Query: 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYP 392
LSLGQAAPDI+AF+RAKAAAYPIF+MIER+T++KAS+K+GRKL K+ GHI+FKDV+F YP
Sbjct: 312 LSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKASAKSGRKLGKVDGHIQFKDVTFSYP 371
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
SRPDV IFDK L IPAGKIVALVGGSGSGKSTVISLIERFYEP+SG +LLDGNNI +D
Sbjct: 372 SRPDVVIFDKLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNINEVD 431
Query: 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
+KWLR QIGLVNQEPALFATTIRENILYGKDDAT EEI RAAKLSEA+SFI+NLPE FET
Sbjct: 432 IKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEINRAAKLSEAISFINNLPEGFET 491
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT 572
QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQEALDRVMVGRTT
Sbjct: 492 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTT 551
Query: 573 VVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQC 632
VVVAHRLST+RNAD+IAVV KIV+ G+HE LISNP+ AY++L++LQEA+S Q N S
Sbjct: 552 VVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQEASSLQRNPSLN 611
Query: 633 PNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVR 692
+ RP SIK+SRELS TR+SF SE+ESV D EP+ V+ +LYSM+R
Sbjct: 612 RTLSRPHSIKYSRELSRTRSSFC----SERESVTR---PDGAEPSKKVKVTVGRLYSMIR 664
Query: 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITV 752
PDW YGVCGTICA IAG+QMPLFALGV+QALV+YY WD TQ+E+KKI ILFCCA++IT+
Sbjct: 665 PDWMYGVCGTICAFIAGSQMPLFALGVAQALVSYYNSWDETQKEIKKIAILFCCASIITL 724
Query: 753 IVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRT 812
IV+ IEH+ FG MGERLTLRVRE MF AIL NEIGWFDE+DN+SS+LASRLESDATLL+T
Sbjct: 725 IVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLKT 784
Query: 813 IVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLS 872
IVVDRSTIL+QN GLV SF+IAFILNWR+TLVV+ATYPL+ISGHISEKLF QGYGG+L+
Sbjct: 785 IVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLN 844
Query: 873 KAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQF 932
KAYLKANMLA E+VSNIRTVAAFC+E+K+LELYSREL+EPSK SF RGQIAG+FYG+SQF
Sbjct: 845 KAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQF 904
Query: 933 FIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAAS 992
FIFSSYGL LWYGS LM K LA FKSVMK+FMVLIVTALAMGETLAL PDLLKGNQM AS
Sbjct: 905 FIFSSYGLGLWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVAS 964
Query: 993 VFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
VFE+LDRKTQ++G+ EELTNVEGTIEL+GVHFSYPSRP+VVIF+DF+L VRAGKSMALV
Sbjct: 965 VFEILDRKTQIVGETSEELTNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALV 1024
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYE 1112
GQSGSGKS+V+SLILRFYDPT GKVM++G DIK+L+LK+LRKHI LVQQEPALFAT+IYE
Sbjct: 1025 GQSGSGKSSVISLILRFYDPTGGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFATTIYE 1084
Query: 1113 NILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172
NILYG +GAS+ EVIE+A LANAHSFI++LPEGYSTKVGERGVQ+SGGQ+QR+AIARA+L
Sbjct: 1085 NILYGNEGASQSEVIESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIARAIL 1144
Query: 1173 KNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKI 1232
KNP ILLLDEATSALDVESERVVQQAL RLM RTT++VAHRLSTIKNAD ISV+ GKI
Sbjct: 1145 KNPAILLLDEATSALDVESERVVQQALDRLMTNRTTVVVAHRLSTIKNADTISVLHGGKI 1204
Query: 1233 IEQGTHSSLVENEDGAYFKLINLQQRQDP 1261
+EQG+H LV N+ G YFKLI+LQQ+Q P
Sbjct: 1205 VEQGSHRKLVLNKTGPYFKLISLQQQQQP 1233
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138976|ref|XP_002326737.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222834059|gb|EEE72536.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2060 bits (5336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1008/1282 (78%), Positives = 1126/1282 (87%), Gaps = 37/1282 (2%)
Query: 17 SSNNN----NNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSV 72
SS +N ++ T+ QE KKQQ+ V +KLFAFADFYD +LM LGS+GACVHG SV
Sbjct: 2 SSQSNIEEADDVETKRQEEKKKQQK---VPFWKLFAFADFYDCLLMGLGSLGACVHGASV 58
Query: 73 PVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQ 132
PVFFIFFGKLINIIG+AYLFPK ASHKVAKYSLDFVYLS ILF+SWIEV+CWM+TGERQ
Sbjct: 59 PVFFIFFGKLINIIGMAYLFPKEASHKVAKYSLDFVYLSAVILFASWIEVACWMHTGERQ 118
Query: 133 AAKMRMAYLRSMLNQDISLFDTEASTGEVISAIT----------SDIIVVQDALSEK--- 179
AAKMRMAYL+SML+QD+SLFDTEASTGEVI+AIT S + AL +
Sbjct: 119 AAKMRMAYLKSMLSQDVSLFDTEASTGEVIAAITTFPCFWLTFLSAFLCCAYALQQVALV 178
Query: 180 ------VGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARV 233
VGNFMHY+SRFLGGFIIGF R+WQISLVTLSIVPLIALAGG+YAY+TIGLIA+V
Sbjct: 179 LLKCILVGNFMHYVSRFLGGFIIGFVRIWQISLVTLSIVPLIALAGGIYAYITIGLIAKV 238
Query: 234 RKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMH 293
RKSYVKAG+IAEEVIGNVRTVQAFAGE+KAV+ Y +AL NTY+YGRKAGLAKGLGLG++H
Sbjct: 239 RKSYVKAGQIAEEVIGNVRTVQAFAGEEKAVRSYVDALRNTYQYGRKAGLAKGLGLGTLH 298
Query: 294 CVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAY 353
CVLFLSW+LLVWY S+VVHK+I+NG +SFTTMLNVVI+GLSLG AAPD+++F+RA AAY
Sbjct: 299 CVLFLSWALLVWYTSIVVHKNIANGADSFTTMLNVVISGLSLGMAAPDVSSFLRATTAAY 358
Query: 354 PIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIV 413
PIFEMIER+T+S S K+ +KL+K+ GHIEFKDV F YPSRPDV IFDKFCLDIP+GKIV
Sbjct: 359 PIFEMIERNTLSNTSKKSIKKLEKVDGHIEFKDVCFGYPSRPDVTIFDKFCLDIPSGKIV 418
Query: 414 ALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473
ALVGGSGSGKSTVISLIERFYEPL G+ILLDGN+I+ LDLKWLR+QIGLVNQEPALFA T
Sbjct: 419 ALVGGSGSGKSTVISLIERFYEPLFGQILLDGNDIRDLDLKWLRKQIGLVNQEPALFAAT 478
Query: 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533
IRENILYGKDDAT+EEITRAA LSEAMSFI+NLP+RFETQVGERGIQLSGGQKQRIA+SR
Sbjct: 479 IRENILYGKDDATLEEITRAATLSEAMSFINNLPDRFETQVGERGIQLSGGQKQRIALSR 538
Query: 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593
AIVKNP ILLLDEATSALDAESE SVQEALDR M+GRTTVVVAHRLSTIRNADVIAVVQ
Sbjct: 539 AIVKNPCILLLDEATSALDAESEKSVQEALDRAMLGRTTVVVAHRLSTIRNADVIAVVQE 598
Query: 594 RKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPL-SIKFSREL----- 647
KIV+ GSHEELISNP S YA+LV LQEAAS + S P +G PL S+ REL
Sbjct: 599 GKIVEIGSHEELISNPQSTYASLVHLQEAASSGGHPSLGPTLGPPLSSMMAQRELKRVNI 658
Query: 648 ----SGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTI 703
TR+SFGASFRS+K+S+ S A A EP K+VS +LYSMV PDW YG+ GTI
Sbjct: 659 MKYSQDTRSSFGASFRSDKDSI-SRAGAGALEPMRTKNVSLKRLYSMVGPDWIYGIVGTI 717
Query: 704 CAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763
A +AG+ MPLFALGV+QALVA+YMDWDTT+ EVKKI ILFCC AVI+VI + IEHLSFG
Sbjct: 718 GAFVAGSLMPLFALGVTQALVAFYMDWDTTRHEVKKIAILFCCGAVISVIFYGIEHLSFG 777
Query: 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQ 823
IMGERLTLRVRE MFSAIL NEIGWFD+ +N+SS+L SRLESDATLLRTIVVDRST+L+
Sbjct: 778 IMGERLTLRVREMMFSAILRNEIGWFDDFNNTSSMLTSRLESDATLLRTIVVDRSTVLLH 837
Query: 824 NFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAA 883
N GLV SFVIAFILNWRITLVV+ATYPLIISGHISEKLF +GYGGNLSKAYLKANMLA
Sbjct: 838 NVGLVVTSFVIAFILNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAG 897
Query: 884 EAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALW 943
EAVSNIRTVAAFC+E+K+L+LY+RELVEPSK SF RGQIAGIFYGI QFFIFSSYGLALW
Sbjct: 898 EAVSNIRTVAAFCAEEKILDLYARELVEPSKNSFTRGQIAGIFYGICQFFIFSSYGLALW 957
Query: 944 YGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003
YGSVLM KELA FKS+MKSFMVLIVTALAMGETLAL PDLLKGNQMAASVFE+LDRKTQV
Sbjct: 958 YGSVLMEKELAGFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMAASVFEILDRKTQV 1017
Query: 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVL 1063
+GD+GEEL NV+GTIELRGV FSYPSRP+ +IF DF+L+VR+GKSMALVGQSGSGKS+VL
Sbjct: 1018 MGDVGEELKNVKGTIELRGVQFSYPSRPDTLIFMDFDLRVRSGKSMALVGQSGSGKSSVL 1077
Query: 1064 SLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASE 1123
SLILRFYDPTAGKVM+DGIDI++L +KSLRKHI LVQQEPALFAT+IYENILYGK+GASE
Sbjct: 1078 SLILRFYDPTAGKVMIDGIDIRKLKVKSLRKHIGLVQQEPALFATTIYENILYGKEGASE 1137
Query: 1124 GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183
E+IEAAKLANAH FIS+LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA
Sbjct: 1138 TELIEAAKLANAHGFISSLPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1197
Query: 1184 TSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243
TSALDVESER+VQQAL RLMR RTT++VAHRLSTIK+ADQISVI+ GKIIEQGTHSSL+E
Sbjct: 1198 TSALDVESERIVQQALDRLMRNRTTVMVAHRLSTIKDADQISVIQGGKIIEQGTHSSLIE 1257
Query: 1244 NEDGAYFKLINLQQRQDPQHSQ 1265
N+DG+YFKL LQQ+Q + +
Sbjct: 1258 NKDGSYFKLFRLQQQQGLEQNH 1279
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2108252|emb|CAA71277.1| P-glycoprotein-2 [Arabidopsis thaliana] gi|2108254|emb|CAA71276.1| P-glycoprotein-2 [Arabidopsis thaliana] gi|4538925|emb|CAB39661.1| P-glycoprotein-2 (pgp2) [Arabidopsis thaliana] gi|7269447|emb|CAB79451.1| P-glycoprotein-2 (pgp2) [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2058 bits (5333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1229 (80%), Positives = 1111/1229 (90%), Gaps = 7/1229 (0%)
Query: 33 KKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLF 92
+K+ + VSL KLF+FADFYD +LM+LGS+GAC+HG SVP+FFIFFGKLINIIGLAYLF
Sbjct: 12 EKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLF 71
Query: 93 PKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLF 152
PK ASH+VAKYSLDFVYLSVAILFSSW+EV+CWM+TGERQAAKMR AYLRSML+QDISLF
Sbjct: 72 PKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLF 131
Query: 153 DTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIV 212
DTEASTGEVISAITSDI+VVQDALSEKVGNF+HYISRF+ GF IGF VWQISLVTLSIV
Sbjct: 132 DTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIV 191
Query: 213 PLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALS 272
PLIALAGG+YA+V IGLIARVRKSY+KAGEIAEEVIGNVRTVQAF GE++AV++Y+EAL
Sbjct: 192 PLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALE 251
Query: 273 NTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAG 332
NTYKYGRKAGL KGLGLGSMHCVLFLSW+LLVW+ SVVVHK I++GG+SFTTMLNVVIAG
Sbjct: 252 NTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAG 311
Query: 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYP 392
LSLGQAAPDI+AF+RAKAAAYPIF+MIER+T++K S+K+GRKL K+ GHI+FKD +F YP
Sbjct: 312 LSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYP 371
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
SRPDV IFD+ L IPAGKIVALVGGSGSGKSTVISLIERFYEP+SG +LLDGNNI LD
Sbjct: 372 SRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELD 431
Query: 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
+KWLR QIGLVNQEPALFATTIRENILYGKDDAT EEITRAAKLSEA+SFI+NLPE FET
Sbjct: 432 IKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFET 491
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT 572
QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQEALDRVMVGRTT
Sbjct: 492 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTT 551
Query: 573 VVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQC 632
VVVAHRLST+RNAD+IAVV KIV+ G+HE LISNP+ AY++L++LQE AS Q N S
Sbjct: 552 VVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQRNPSLN 611
Query: 633 PNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVR 692
+ RP SIK+SRELS TR+SF SE+ESV AD P+ V+ +LYSM+R
Sbjct: 612 RTLSRPHSIKYSRELSRTRSSFC----SERESVTRPDGAD---PSKKVKVTVGRLYSMIR 664
Query: 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITV 752
PDW YGVCGTICA IAG+QMPLFALGVSQALV+YY WD TQ+E+KKI ILFCCA+VIT+
Sbjct: 665 PDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIKKIAILFCCASVITL 724
Query: 753 IVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRT 812
IV+ IEH+ FG MGERLTLRVRE MF AIL NEIGWFDE+DN+SS+LASRLESDATLL+T
Sbjct: 725 IVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLKT 784
Query: 813 IVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLS 872
IVVDRSTIL+QN GLV SF+IAFILNWR+TLVV+ATYPL+ISGHISEKLF QGYGG+L+
Sbjct: 785 IVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLN 844
Query: 873 KAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQF 932
KAYLKANMLA E+VSNIRTVAAFC+E+K+LELYSREL+EPSK SF RGQIAG+FYG+SQF
Sbjct: 845 KAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQF 904
Query: 933 FIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAAS 992
FIFSSYGLALWYGS LM K LA FKSVMK+FMVLIVTALAMGETLAL PDLLKGNQM AS
Sbjct: 905 FIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVAS 964
Query: 993 VFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
VFE+LDRKTQ++G+ EEL NVEGTIEL+GVHFSYPSRP+VVIF+DF+L VRAGKSMALV
Sbjct: 965 VFEILDRKTQIVGETSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALV 1024
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYE 1112
GQSGSGKS+V+SLILRFYDPTAGKVM++G DIK+L+LK+LRKHI LVQQEPALFAT+IYE
Sbjct: 1025 GQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFATTIYE 1084
Query: 1113 NILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172
NILYG +GAS+ EV+E+A LANAHSFI++LPEGYSTKVGERGVQ+SGGQ+QR+AIARA+L
Sbjct: 1085 NILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIARAIL 1144
Query: 1173 KNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKI 1232
KNP ILLLDEATSALDVESERVVQQAL RLM RTT++VAHRLSTIKNAD ISV+ GKI
Sbjct: 1145 KNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVLHGGKI 1204
Query: 1233 IEQGTHSSLVENEDGAYFKLINLQQRQDP 1261
+EQG+H LV N+ G YFKLI+LQQ+Q P
Sbjct: 1205 VEQGSHRKLVLNKSGPYFKLISLQQQQQP 1233
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20466380|gb|AAM20507.1| P-glycoprotein-2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2058 bits (5332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1229 (80%), Positives = 1111/1229 (90%), Gaps = 7/1229 (0%)
Query: 33 KKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLF 92
+K+ + VSL KLF+FADFYD +LM+LGS+GAC+HG SVP+FFIFFGKLINIIGLAYLF
Sbjct: 12 EKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLF 71
Query: 93 PKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLF 152
PK ASH+VAKYSLDFVYLSVAILFSSW+EV+CWM+TGERQAAKMR AYLRSML+QDISLF
Sbjct: 72 PKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLF 131
Query: 153 DTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIV 212
DTEASTGEVISAITSDI+VVQDALSEKVGNF+HYISRF+ GF IGF VWQISLVTLSIV
Sbjct: 132 DTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIV 191
Query: 213 PLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALS 272
PLIALAGG+YA+V IGLIARVRKSY+KAGEIAEEVIGNVRTVQAF GE++AV++Y+EAL
Sbjct: 192 PLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALE 251
Query: 273 NTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAG 332
NTYKYGRKAGL KGLGLGSMHCVLFLSW+LLVW+ SVVVHK I++GG+SFTTMLNVVIAG
Sbjct: 252 NTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAG 311
Query: 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYP 392
LSLGQAAPDI+AF+RAKAAAYPIF+MIER+T++K S+K+GRKL K+ GHI+FKD +F YP
Sbjct: 312 LSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYP 371
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
SRPDV IFD+ L IPAGKIVALVGGSGSGKSTVISLIERFYEP+SG +LLDGNNI LD
Sbjct: 372 SRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELD 431
Query: 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
+KWLR QIGLVNQEPALFATTIRENILYGKDDAT EEITRAAKLSEA+SFI+NLPE FET
Sbjct: 432 IKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFET 491
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT 572
QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQEALDRVMVGRTT
Sbjct: 492 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTT 551
Query: 573 VVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQC 632
VVVAHRLST+RNAD+IAVV KIV+ G+HE LISNP+ AY++L++LQE AS Q N S
Sbjct: 552 VVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQRNPSLN 611
Query: 633 PNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVR 692
+ RP SIK+SRELS TR+SF SE+ESV AD P+ V+ +LYSM+R
Sbjct: 612 RTLSRPHSIKYSRELSRTRSSFC----SERESVTRPDGAD---PSKKVKVTVGRLYSMIR 664
Query: 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITV 752
PDW YGVCGTICA IAG+QMPLFALGVSQALV+YY WD TQ+E+KKI ILFCCA+VIT+
Sbjct: 665 PDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIKKIAILFCCASVITL 724
Query: 753 IVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRT 812
IV+ IEH+ FG MGERLTLRVRE MF AIL NEIGWFDE+DN+SS+LASRLESDATLL+T
Sbjct: 725 IVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNASSMLASRLESDATLLKT 784
Query: 813 IVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLS 872
IVVDRSTIL+QN GLV SF+IAFILNWR+TLVV+ATYPL+ISGHISEKLF QGYGG+L+
Sbjct: 785 IVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLN 844
Query: 873 KAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQF 932
KAYLKANMLA E+VSNIRTVAAFC+E+K+LELYSREL+EPSK SF RGQIAG+FYG+SQF
Sbjct: 845 KAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQF 904
Query: 933 FIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAAS 992
FIFSSYGLALWYGS LM K LA FKSVMK+FMVLIVTALAMGETLAL PDLLKGNQM AS
Sbjct: 905 FIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVAS 964
Query: 993 VFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
VFE+LDRKTQ++G+ EEL NVEGTIEL+GVHFSYPSRP+VVIF+DF+L VRAGKSMALV
Sbjct: 965 VFEILDRKTQIVGETSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALV 1024
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYE 1112
GQSGSGKS+V+SLILRFYDPTAGKVM++G DIK+L+LK+LRKHI LVQQEPALFAT+IYE
Sbjct: 1025 GQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFATTIYE 1084
Query: 1113 NILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172
NILYG +GAS+ EV+E+A LANAHSFI++LPEGYSTKVGERGVQ+SGGQ+QR+AIARA+L
Sbjct: 1085 NILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIARAIL 1144
Query: 1173 KNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKI 1232
KNP ILLLDEATSALDVESERVVQQAL RLM RTT++VAHRLSTIKNAD ISV+ GKI
Sbjct: 1145 KNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVLHGGKI 1204
Query: 1233 IEQGTHSSLVENEDGAYFKLINLQQRQDP 1261
+EQG+H LV N+ G YFKLI+LQQ+Q P
Sbjct: 1205 VEQGSHRKLVLNKSGPYFKLISLQQQQQP 1233
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1265 | ||||||
| TAIR|locus:2120805 | 1273 | ABCB2 "ATP-binding cassette B2 | 0.959 | 0.953 | 0.776 | 0.0 | |
| UNIPROTKB|Q8GU75 | 1264 | mdr11 "MDR-like ABC transporte | 0.964 | 0.965 | 0.734 | 0.0 | |
| TAIR|locus:2019958 | 1227 | PGP10 "P-glycoprotein 10" [Ara | 0.691 | 0.713 | 0.761 | 0.0 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.954 | 0.964 | 0.506 | 0.0 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.958 | 0.963 | 0.495 | 0.0 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.543 | 0.534 | 0.463 | 1.79999999998e-313 | |
| TAIR|locus:2010464 | 1245 | ABCB13 "ATP-binding cassette B | 0.950 | 0.966 | 0.495 | 9.20000000001e-313 | |
| TAIR|locus:2010444 | 1247 | ABCB14 "ATP-binding cassette B | 0.955 | 0.969 | 0.497 | 8.3e-312 | |
| UNIPROTKB|Q7EZL2 | 1344 | P0705A05.112-2 "Putative P-gly | 0.921 | 0.867 | 0.463 | 7.8e-284 | |
| TAIR|locus:2041434 | 1286 | ABCB4 "ATP-binding cassette B4 | 0.453 | 0.446 | 0.466 | 1.5e-274 |
| TAIR|locus:2120805 ABCB2 "ATP-binding cassette B2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4807 (1697.2 bits), Expect = 0., P = 0.
Identities = 948/1221 (77%), Positives = 1067/1221 (87%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
VSL KLF+FADFYD +LM+LGS+GAC+HG SVP+FFIFFGKLINIIGLAYLFPK ASH+V
Sbjct: 60 VSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLFPKQASHRV 119
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
AKYSLDFVYLSVAILFSSW+EV+CWM+TGERQAAKMR AYLRSML+QDISLFDTEASTGE
Sbjct: 120 AKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLFDTEASTGE 179
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
VISAITSDI+VVQDALSEKVGNF+HYISRF+ GF IGF VWQISLVTLSIVPLIALAGG
Sbjct: 180 VISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIVPLIALAGG 239
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
+YA+V IGLIARVRKSY+KAGEIAEEVIGNVRTVQAF GE++AV++Y+EAL NT
Sbjct: 240 IYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALENTYKYGRK 299
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
SMHC HK I++GG+SFTTMLNVVIAGLSLGQAAP
Sbjct: 300 AGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAP 359
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400
DI+AF+RAKAAAYPIF+MIER+T++K S+K+GRKL K+ GHI+FKD +F YPSRPDV IF
Sbjct: 360 DISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIF 419
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
D+ L IPAGKIVALVGGSGSGKSTVISLIERFYEP+SG +LLDGNNI LD+KWLR QI
Sbjct: 420 DRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQI 479
Query: 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
GLVNQEPALFATTIRENILYGKDDAT EEITRAAKLSEA+SFI+NLPE FETQVGERGIQ
Sbjct: 480 GLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQ 539
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE SVQEALDRVMVGRTTVVVAHRLS
Sbjct: 540 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLS 599
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXXXXXXXXCPNMGRPLS 640
T+RNAD+IAVV KIV+ G+HE LISNP+ AY++L+ + RP S
Sbjct: 600 TVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQRNPSLNRTLSRPHS 659
Query: 641 IKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVC 700
IK+SRELS TR+SF SE+ESV AD P+ V+ +LYSM+RPDW YGVC
Sbjct: 660 IKYSRELSRTRSSFC----SERESVTRPDGAD---PSKKVKVTVGRLYSMIRPDWMYGVC 712
Query: 701 GTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHL 760
GTICA IAG+QMPLFALGVSQALV+YY WD TQ+E+KKI ILFCCA+VIT+IV+ IEH+
Sbjct: 713 GTICAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIKKIAILFCCASVITLIVYTIEHI 772
Query: 761 SFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820
FG MGERLTLRVRE MF AIL NEIGWFDE+DN+SS+LASRLESDATLL+TIVVDRSTI
Sbjct: 773 CFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLKTIVVDRSTI 832
Query: 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANM 880
L+QN GLV SF+IAFILNWR+TLVV+ATYPL+ISGHISEKLF QGYGG+L+KAYLKANM
Sbjct: 833 LLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLNKAYLKANM 892
Query: 881 LAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGL 940
LA E+VSNIRTVAAFC+E+K+LELYSREL+EPSK SF RGQIAG+FYG+SQFFIFSSYGL
Sbjct: 893 LAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGL 952
Query: 941 ALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRK 1000
ALWYGS LM K LA FKSVMK+FMVLIVTALAMGETLAL PDLLKGNQM ASVFE+LDRK
Sbjct: 953 ALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVASVFEILDRK 1012
Query: 1001 TQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKS 1060
TQ++G+ EEL NVEGTIEL+GVHFSYPSRP+VVIF+DF+L VRAGKSMALVGQSGSGKS
Sbjct: 1013 TQIVGETSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKS 1072
Query: 1061 TVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDG 1120
+V+SLILRFYDPTAGKVM++G DIK+L+LK+LRKHI LVQQEPALFAT+IYENILYG +G
Sbjct: 1073 SVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFATTIYENILYGNEG 1132
Query: 1121 ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLL 1180
AS+ EV+E+A LANAHSFI++LPEGYSTKVGERGVQ+SGGQ+QR+AIARA+LKNP ILLL
Sbjct: 1133 ASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIARAILKNPAILLL 1192
Query: 1181 DEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSS 1240
DEATSALDVESERVVQQAL RLM RTT++VAHRLSTIKNAD ISV+ GKI+EQG+H
Sbjct: 1193 DEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVLHGGKIVEQGSHRK 1252
Query: 1241 LVENEDGAYFKLINLQQRQDP 1261
LV N+ G YFKLI+LQQ+Q P
Sbjct: 1253 LVLNKSGPYFKLISLQQQQQP 1273
|
|
| UNIPROTKB|Q8GU75 mdr11 "MDR-like ABC transporter" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 4622 (1632.1 bits), Expect = 0., P = 0.
Identities = 901/1226 (73%), Positives = 1055/1226 (86%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
V KLF+FAD +DY+LM++GS+GAC HG SVPVFFIFFGKLINIIGLAYLFP T S +V
Sbjct: 35 VPFLKLFSFADRWDYVLMAVGSLGACAHGASVPVFFIFFGKLINIIGLAYLFPTTVSGRV 94
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
AKYSLDFVYL + ILFSSW EV+CWM+TGERQAAKMR AYLRSML+QDI++FDTEASTGE
Sbjct: 95 AKYSLDFVYLGIVILFSSWTEVACWMHTGERQAAKMRQAYLRSMLDQDIAVFDTEASTGE 154
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
VI+AITSDI+VVQDA+SEKVGNFMHYISRFL GF IGF++VWQISLVTL+IVPLIA+AGG
Sbjct: 155 VINAITSDILVVQDAISEKVGNFMHYISRFLAGFAIGFSQVWQISLVTLAIVPLIAIAGG 214
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
+YAYVTIGL+ARVRKSYVKAGEIAEEVIGNVRTVQAF GE+KAV+ Y+EAL T
Sbjct: 215 IYAYVTIGLMARVRKSYVKAGEIAEEVIGNVRTVQAFVGEEKAVRTYREALLRTYKYGKR 274
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
SMH HK+ISNGGESFTTMLNVVIAGLSLGQAAP
Sbjct: 275 GGLAKGLGLGSMHSVLFLSWALLIWFTSVVVHKNISNGGESFTTMLNVVIAGLSLGQAAP 334
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400
+I+ F+RA+ AAYPIF+MIER+T++KASSK GR L + GHI+F+DV F YPSRPDV I
Sbjct: 335 NISTFLRARTAAYPIFQMIERNTVNKASSKAGRTLPSVDGHIQFRDVRFAYPSRPDVVIL 394
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
D+F LD PAGKIVALVGGSGSGKSTV+SLIERFYEPL+G +LLDG++IK LD+KWLRQQI
Sbjct: 395 DRFSLDFPAGKIVALVGGSGSGKSTVVSLIERFYEPLTGAVLLDGHDIKDLDVKWLRQQI 454
Query: 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
GLVNQEPALFAT+IRENILYGK DA+M+EI AAKLSEA++FI++LP+R+ETQVGERGIQ
Sbjct: 455 GLVNQEPALFATSIRENILYGKGDASMDEINHAAKLSEAITFINHLPDRYETQVGERGIQ 514
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQKQRIAISRAI+KNPSILLLDEATSALDAESE SVQEALDRVMVGRTTVV+AHRLS
Sbjct: 515 LSGGQKQRIAISRAILKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVIAHRLS 574
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXXXX--XXXXCPNMGRP 638
TIRNAD IAVV +IV+TG+HE+L++NP SAYA+L+ ++ RP
Sbjct: 575 TIRNADTIAVVDSGRIVETGTHEQLMANPRSAYASLIQLQEAAQLQNKQSFSDSASLSRP 634
Query: 639 LSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPA--TAKHVSAIKLYSMVRPDWT 696
LS K+SRELS RTS G SFRSEK+SV +G +A + +K VS KLYSM+RPDW
Sbjct: 635 LSSKYSRELS--RTSMGGSFRSEKDSVSRYGTVEAHDEGGHKSKPVSMKKLYSMIRPDWF 692
Query: 697 YGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHA 756
+GV GT+ A +AG+QMPLFALGV+QALV+YYM W+TT+REV+KI +LFCC AV+TV+ HA
Sbjct: 693 FGVSGTVSAFVAGSQMPLFALGVTQALVSYYMGWETTKREVRKIAVLFCCGAVLTVVFHA 752
Query: 757 IEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVD 816
IEHLSFGIMGERLTLRVRE+MF+AIL NEIGWFD+ ++SS+L+SRLE+DATL+RTIVVD
Sbjct: 753 IEHLSFGIMGERLTLRVRERMFAAILRNEIGWFDDTSHTSSMLSSRLETDATLVRTIVVD 812
Query: 817 RSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYL 876
RSTIL+QN G++ S +IAFI+NWRITLVV+ATYPL++SGHISEK+F +GYGGNL K+YL
Sbjct: 813 RSTILLQNIGMIVTSLIIAFIINWRITLVVLATYPLMVSGHISEKMFMKGYGGNLGKSYL 872
Query: 877 KANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFS 936
KANMLAAEAVSNIRTVAAFC+E+KV++LY+ EL EP+K+SF RGQ AG+FYG+SQFF+FS
Sbjct: 873 KANMLAAEAVSNIRTVAAFCAEEKVIKLYADELKEPAKQSFRRGQGAGLFYGVSQFFLFS 932
Query: 937 SYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEV 996
SY LALWYGS LM KE+ASFKSVMKSFMVLIVTALAMGETLA+ PD++KGNQM +SVFE+
Sbjct: 933 SYALALWYGSELMSKEMASFKSVMKSFMVLIVTALAMGETLAMAPDIIKGNQMVSSVFEI 992
Query: 997 LDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSG 1056
LDRKT V+ D G ++ VEG IELRGV F YP+RPEVV+FK +L ++AGKSMALVG SG
Sbjct: 993 LDRKTDVLIDAGNDVKRVEGVIELRGVEFRYPARPEVVVFKGLDLLMKAGKSMALVGMSG 1052
Query: 1057 SGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILY 1116
SGKSTVLSLILRFYDP AGKV++DG DI+++ LKSLRKHI LVQQEPALFAT+IY+NILY
Sbjct: 1053 SGKSTVLSLILRFYDPIAGKVLIDGKDIRKVKLKSLRKHIGLVQQEPALFATTIYDNILY 1112
Query: 1117 GKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPE 1176
GKDGA+E EV++AAKLANAHSFISALPEGY T+VGERGVQLSGGQ+QR+AIARA++K+P
Sbjct: 1113 GKDGATEAEVVDAAKLANAHSFISALPEGYRTRVGERGVQLSGGQRQRIAIARAIVKDPA 1172
Query: 1177 ILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQG 1236
ILLLDEATSALDVESERVVQQAL R+MR RTT++VAHRLSTIKNAD ISV++ GKIIEQG
Sbjct: 1173 ILLLDEATSALDVESERVVQQALDRVMRNRTTVMVAHRLSTIKNADVISVLQDGKIIEQG 1232
Query: 1237 THSSLVENEDGAYFKLINLQQRQDPQ 1262
H L+EN +GAY KL++LQQ+Q Q
Sbjct: 1233 AHHQLIENRNGAYHKLVSLQQQQQQQ 1258
|
|
| TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3408 (1204.7 bits), Expect = 0., P = 0.
Identities = 678/890 (76%), Positives = 779/890 (87%)
Query: 370 KTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL 429
KTGRKL ++G I FKDV+F YPSRPDV IFDK IPAGK+VALVGGSGSGKST+ISL
Sbjct: 349 KTGRKLGNVNGDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISL 408
Query: 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489
IERFYEP G ++LDGN+I+ LDLKWLR IGLVNQEP LFATTIRENI+YGKDDAT EE
Sbjct: 409 IERFYEPTDGAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEE 468
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
IT AAKLSEA+SFI+NLPE FETQVGERGIQLSGGQKQRI+ISRAIVKNPSILLLDEATS
Sbjct: 469 ITNAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATS 528
Query: 550 ALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
ALDAESE VQEALDRVMVGRTTVVVAHRLST+RNAD+IAVV G KI+++GSH+ELISNP
Sbjct: 529 ALDAESEKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNP 588
Query: 610 NSAYAALVXXXXXXXXXXXXXXCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHG 669
+ AY++L+ P++ P+S K EL T T+ S +SV
Sbjct: 589 DGAYSSLLRIQEAASPNLNHT--PSL--PVSTKPLPELPITETT-----SSIHQSV---N 636
Query: 670 AADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMD 729
D T+ A V+ +LYSM+RPDW YG+CGT+ + IAG+QMPLFALG++QALV+YYMD
Sbjct: 637 QPDTTKQAK---VTVGRLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQALVSYYMD 693
Query: 730 WDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWF 789
W+TTQ EVK+I+ILFCC +VITVIVH IEH +FGIMGERLTLRVR+KMFSAIL NEIGWF
Sbjct: 694 WETTQNEVKRISILFCCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWF 753
Query: 790 DEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVAT 849
D++DN+SS+LASRLESDATLLRTIVVDRSTIL++N GLV +F+I+FILNWR+TLVV+AT
Sbjct: 754 DKVDNTSSMLASRLESDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLAT 813
Query: 850 YPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSREL 909
YPLIISGHISEK+F QGYGGNLSKAYLKANMLA E++SNIRTV AFC+E+KVL+LYS+EL
Sbjct: 814 YPLIISGHISEKIFMQGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKEL 873
Query: 910 VEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVT 969
+EPS+RSF RGQ+AGI YG+SQFFIFSSYGLALWYGS+LM K L+SF+SVMK+FMVLIVT
Sbjct: 874 LEPSERSFRRGQMAGILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVT 933
Query: 970 ALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPS 1029
AL MGE LAL PDLLKGNQM SVFE+LDR+TQV+GD GEEL+NVEGTIEL+GVHFSYPS
Sbjct: 934 ALVMGEVLALAPDLLKGNQMVVSVFELLDRRTQVVGDTGEELSNVEGTIELKGVHFSYPS 993
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL 1089
RP+V IF DFNL V +GKSMALVGQSGSGKS+VLSL+LRFYDPTAG +M+DG DIK+L L
Sbjct: 994 RPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKL 1053
Query: 1090 KSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTK 1149
KSLR+HI LVQQEPALFAT+IYENILYGK+GASE EV+EAAKLANAHSFIS+LPEGYSTK
Sbjct: 1054 KSLRRHIGLVQQEPALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTK 1113
Query: 1150 VGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTI 1209
VGERG+Q+SGGQ+QR+AIARAVLKNPEILLLDEATSALDVESERVVQQAL RLMR RTT+
Sbjct: 1114 VGERGIQMSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTTV 1173
Query: 1210 IVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQ 1259
+VAHRLSTIKN+D ISVI+ GKIIEQG+H+ LVEN++G Y KLI+LQQRQ
Sbjct: 1174 VVAHRLSTIKNSDMISVIQDGKIIEQGSHNILVENKNGPYSKLISLQQRQ 1223
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3141 (1110.7 bits), Expect = 0., P = 0.
Identities = 622/1227 (50%), Positives = 866/1227 (70%)
Query: 44 FKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKY 103
FKLF+FAD +DY+LM +GS+GA VHG S+PVFF+ FG+++N G + H+V++Y
Sbjct: 27 FKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMVHEVSRY 86
Query: 104 SLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVIS 163
SL FVYL + + FSS+ E++CWMY+GERQ A +R YL ++L QD+ FDT+A TG+++
Sbjct: 87 SLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFDTDARTGDIVF 146
Query: 164 AITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYA 223
++++D ++VQDA+SEKVGNF+HY+S FL G ++GF W+++L++++++P IA AGG+YA
Sbjct: 147 SVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFAGGLYA 206
Query: 224 YVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXXXXX 283
Y G+ ++ R+SY AG IAE+ I VRTV ++ GE KA+ Y +A+ T
Sbjct: 207 YTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLGYKAGM 266
Query: 284 XXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDIT 343
+ ++GG++FT + + ++ G+SLGQ+ ++
Sbjct: 267 AKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLG 326
Query: 344 AFIRAKAAAYPIFEMI-ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDK 402
AF + KAA Y + E+I +R T+ + G+ LD++ G+IEFKDV+F YPSRPDV IF
Sbjct: 327 AFSKGKAAGYKLMEIINQRPTIIQ-DPLDGKCLDQVHGNIEFKDVTFSYPSRPDVMIFRN 385
Query: 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462
F + P+GK VA+VGGSGSGKSTV+SLIERFY+P SG+ILLDG IK L LK+LR+QIGL
Sbjct: 386 FNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGL 445
Query: 463 VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
VNQEPALFATTI ENILYGK DATM E+ AA + A SFI+ LP+ ++TQVGERG+QLS
Sbjct: 446 VNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLS 505
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582
GGQKQRIAI+RA++K+P ILLLDEATSALDA SE+ VQEALDRVMVGRTTVVVAHRL TI
Sbjct: 506 GGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTI 565
Query: 583 RNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXXXXXXXXCPNMGRPLSIK 642
RN D IAV+Q ++V+TG+HEELI+ + AYA+L+ P+ R S +
Sbjct: 566 RNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQEMVGTRDFSN--PSTRRTRSTR 622
Query: 643 FSRELSGTRTSF-GASFRSEKESVLSHGA---------ADATEPATAKHVSAIKLYSMVR 692
S LS S S R+ S S GA A+ A +L +
Sbjct: 623 LSHSLSTKSLSLRSGSLRNLSYSY-STGADGRIEMISNAETDRKTRAPENYFYRLLKLNS 681
Query: 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQAL-VAYYMDWDTTQREVKKITILFCCAAVIT 751
P+W Y + G + +I++G P FA+ +S + V YY D+D+ +R+ K+ ++ A +
Sbjct: 682 PEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAGLYA 741
Query: 752 VIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLR 811
V + I+H F IMGE LT RVR M SAIL NE+GWFDE +++SS++A+RL +DA ++
Sbjct: 742 VGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVK 801
Query: 812 TIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL 871
+ + +R ++++QN + SF++AFI+ WR++L+++ T+PL++ + +++L +G+ G+
Sbjct: 802 SAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDT 861
Query: 872 SKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQ 931
+KA+ K +M+A E VSNIRTVAAF ++ K+L L+ EL P KRS R Q +G +G+SQ
Sbjct: 862 AKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGLSQ 921
Query: 932 FFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAA 991
++ S L LWYG+ L+ K +++F V+K F+VL++TA ++ ET++L P++++G +
Sbjct: 922 LALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVG 981
Query: 992 SVFEVLDRKTQVIGDIGEE--LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSM 1049
SVF VLDR+T++ D + + + G IE R V F+YPSRP+V++F+DFNL++RAG S
Sbjct: 982 SVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQ 1041
Query: 1050 ALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATS 1109
ALVG SGSGKS+V+++I RFYDP AGKVM+DG DI+RLNLKSLR I LVQQEPALFA +
Sbjct: 1042 ALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAT 1101
Query: 1110 IYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169
I++NI YGKDGA+E EVI+AA+ ANAH FIS LPEGY T VGERGVQLSGGQKQR+AIAR
Sbjct: 1102 IFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRIAIAR 1161
Query: 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIES 1229
AVLKNP +LLLDEATSALD ESE V+Q+AL+RLMR RTT++VAHRLSTI+ D I VI+
Sbjct: 1162 AVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQD 1221
Query: 1230 GKIIEQGTHSSLVENEDGAYFKLINLQ 1256
G+I+EQG+HS LV +GAY +L+ LQ
Sbjct: 1222 GRIVEQGSHSELVSRPEGAYSRLLQLQ 1248
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 3060 (1082.2 bits), Expect = 0., P = 0.
Identities = 609/1230 (49%), Positives = 858/1230 (69%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
V+ +LF FAD D++LM+ GS GA VHG ++PVFF+ FG+LIN G + + +V
Sbjct: 29 VAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFGKNQHSLRRMTDEV 88
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
+KYSL FVYL + + SS++E++CWMYTGERQ +R YL ++L QD+ FDT+A TG+
Sbjct: 89 SKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDARTGD 148
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
V+ ++++D ++VQDA+ EKVGNF+HY+S FL G ++GF W+++L++++++P IA AGG
Sbjct: 149 VVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGG 208
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
+YAY GL ++ R SY AG IAE+ I VRTV ++ GE KA+ Y EA+ NT
Sbjct: 209 LYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLKLGYK 268
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
+ ++GG++FT + + ++ GLSLGQ+
Sbjct: 269 AGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLGQSFS 328
Query: 341 DITAFIRAKAAAYPIFEMI-ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAI 399
++ AF + K A Y + E+I +R T+ + + GR LD++ G+IEFK+V+F YPSRPDV I
Sbjct: 329 NLGAFSKGKIAGYKLLEVIRQRPTIVQDPAD-GRCLDEVHGNIEFKEVAFSYPSRPDVMI 387
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
F F L PAGK A+VGGSGSGKSTV++LIERFY+P G++LLD +IK L LKWLR Q
Sbjct: 388 FRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWLRDQ 447
Query: 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
IGLVNQEPALFATTI ENILYGK DATM E+ AA + A SFI+ LP + TQVGERG+
Sbjct: 448 IGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGERGL 507
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
QLSGGQKQRIAI+RA++KNP ILLLDEATSALDA SEN VQEALDR+MVGRTTVVVAHRL
Sbjct: 508 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHRL 567
Query: 580 STIRNADVIAVVQGRKIVKTGSHEELISNPNS-AYAALVXXXXXXXXXXXXXXCPNMGRP 638
STIR D+IAV+Q ++V+TG+H+EL++ +S AYAAL+ R
Sbjct: 568 STIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRDFRGPSTRKSRS 627
Query: 639 --LSIKFS-RELS---GTRTSFGASFRSEKES---VLSHGAADATEPATAKHVSAIKLYS 689
LS S R LS G+ + S+ + + ++S+ D PA + KL
Sbjct: 628 SRLSNSLSTRSLSLRSGSLRNLSYSYSTGADGRIEMVSNADNDRKYPAPKGYF--FKLLK 685
Query: 690 MVRPDWTYGVCGTICAIIAGAQMPLFALGVSQAL-VAYYMDWDTTQREVKKITILFCCAA 748
+ P+W Y + G I +I++G P FA+ +S + V Y+ D + +R+ ++ ++
Sbjct: 686 LNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAMERKTREYVFIYIGTG 745
Query: 749 VITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDAT 808
+ V+ + ++H F IMGE LT RVR M +AIL N++GWFD+ +N+SS++A+RL +DA
Sbjct: 746 LYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEENNSSLVAARLSTDAA 805
Query: 809 LLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYG 868
+++ + +R ++++QN + SFV+ FI+ WR+ ++++ T+PL++ + +++L +G+
Sbjct: 806 DVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLLVLANFAQQLSMKGFA 865
Query: 869 GNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYG 928
G+ +KA+ K +M+A E VSNIRTVAAF ++DKVL L+ EL P S R QI+G +G
Sbjct: 866 GDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQMHSLRRSQISGALFG 925
Query: 929 ISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQ 988
+SQ +++S L LWYG+ L+ +++F V+K F+VL++TA + ET++L P++++G +
Sbjct: 926 LSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANTVAETVSLAPEIVRGGE 985
Query: 989 MAASVFEVLDRKTQVIGDIGEE--LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAG 1046
SVF +L+ +T++ D E + +V G I+ R V F+YPSRP+V++FKDF+L++RAG
Sbjct: 986 SIRSVFAILNYRTRIDPDEPETEPVESVRGDIDFRHVDFAYPSRPDVMVFKDFSLRIRAG 1045
Query: 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALF 1106
+S ALVG SGSGKSTV++LI RFYDP AGKVM+DG DI+RLN++SLR I LVQQEP LF
Sbjct: 1046 QSQALVGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLNVRSLRLKIGLVQQEPVLF 1105
Query: 1107 ATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166
ATSI+ENI YGKDGA+E EVIEAAK+AN H F+SALPEGY T VGERGVQLSGGQKQR+A
Sbjct: 1106 ATSIFENIAYGKDGATEEEVIEAAKVANMHGFVSALPEGYKTPVGERGVQLSGGQKQRIA 1165
Query: 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISV 1226
IARAVLK+P +LLLDEATSALD ESE V+Q+AL+R+M+ RT ++VAHRLSTI+ D I+V
Sbjct: 1166 IARAVLKDPAVLLLDEATSALDAESECVLQEALERIMKGRTAVLVAHRLSTIRGVDSIAV 1225
Query: 1227 IESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
++ G+++EQG+H LV DGAY +L+ LQ
Sbjct: 1226 VQDGRVVEQGSHGELVSRPDGAYSRLLQLQ 1255
|
|
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1561 (554.6 bits), Expect = 1.8e-313, Sum P(2) = 1.8e-313
Identities = 326/703 (46%), Positives = 446/703 (63%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
V+ +LF FAD DY+LM +GS+GA VHG S+P+F FF L+N G + +V
Sbjct: 27 VAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVEKMMEEV 86
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
KY+L F+ + AI SSW E+SCWM++GERQ KMR+ YL + LNQDI FDTE T +
Sbjct: 87 LKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEVRTSD 146
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
V+ AI +D ++VQDA+SEK+GNF+HY++ F+ GFI+GF VWQ++LVTL++VPLIA+ GG
Sbjct: 147 VVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGG 206
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
++ L + ++S +AG I E+ + +R V AF GE +A + Y AL
Sbjct: 207 IHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYK 266
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
+ + H++NGG + TM V+I GL+LGQ+AP
Sbjct: 267 TGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAP 326
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400
+ AF +AK AA IF +I+ + +S++G +LD ++G +E K+V F YPSRPDV I
Sbjct: 327 SMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKIL 386
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
+ FCL +PAGK +ALVG SGSGKSTV+SLIERFY+P SG++LLDG ++K L L+WLRQQI
Sbjct: 387 NNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQI 446
Query: 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
GLV+QEPALFAT+I+ENIL G+ DA EI AA+++ A SFI LP+ F+TQVGERG+Q
Sbjct: 447 GLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQ 506
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQKQRIAI+RA++KNP+ILLLDEATSALD+ESE VQEALDR M+GRTT+++AHRLS
Sbjct: 507 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLS 566
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISN-PNSAYAALVXXXXXXXXXXXXXXCPNMGRPL 639
TIR AD++AV+Q + + G+H+EL S N YA L+ + RP
Sbjct: 567 TIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNARKSSARPS 626
Query: 640 SIK--FSRELSGTRTSFGASFRSEKESVLSHG----AADATE-PATAKHVSAIK------ 686
S + S + +S+G S S + S S + DA+ P A K
Sbjct: 627 SARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAFKDQANSF 686
Query: 687 --LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYY 727
L M P+W Y + G++ ++I G+ FA +S L YY
Sbjct: 687 WRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYY 729
|
|
| TAIR|locus:2010464 ABCB13 "ATP-binding cassette B13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3000 (1061.1 bits), Expect = 9.2e-313, P = 9.2e-313
Identities = 609/1228 (49%), Positives = 845/1228 (68%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
VSL LF+ AD DY LM LG +GAC+HG ++P+FF+FFGK+++ +G PK S +V
Sbjct: 30 VSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLDSLGNLSTDPKAISSRV 89
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
++ +L VYL + S+WI VSCWM TGERQ A++R+ YL+S+L +DI+ FDTEA
Sbjct: 90 SQNALYLVYLGLVNFVSAWIGVSCWMQTGERQTARLRINYLKSILAKDITFFDTEARDSN 149
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
+I I+SD I+VQDA+ +K + + Y+S+F+ GF+IGF VWQ++L+TL +VPLIA+AGG
Sbjct: 150 LIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGG 209
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
YA V + + +Y AG++AEEV+ VRTV AF GE+KAVK Y +L
Sbjct: 210 GYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGKR 269
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
+ +NG ++FTT+LNV+ +G +LGQAAP
Sbjct: 270 SGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAAP 329
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKT--GRKLDKLSGHIEFKDVSFCYPSRPDVA 398
++A + + AA IF MI + S++S + G L ++G IEF+ VSF YPSRP++
Sbjct: 330 SLSAIAKGRVAAANIFRMIGNNN-SESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPNM- 387
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
+F+ I +GK A VG SGSGKST+IS+++RFYEP SGEILLDGN+IK L LKW R+
Sbjct: 388 VFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFRE 447
Query: 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
Q+GLV+QEPALFATTI NIL GK++A M++I AAK + A SFI +LP + TQVGE G
Sbjct: 448 QLGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGG 507
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHR 578
QLSGGQKQRIAI+RA+++NP ILLLDEATSALDAESE VQ+ALD VM RTT+VVAHR
Sbjct: 508 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHR 567
Query: 579 LSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXX----XXXXXXXXCPN 634
LSTIRN D I V++ ++ +TGSH EL+ YA LV C +
Sbjct: 568 LSTIRNVDKIVVLRDGQVRETGSHSELMLRGGD-YATLVNCQETEPQENSRSIMSETCKS 626
Query: 635 MGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHV--SAIKLYSMVR 692
S SR +S +R + +SFR ++E + D+ + ++ + IKL S
Sbjct: 627 QAGSSS---SRRVSSSRRT--SSFRVDQEKTKND---DSKKDFSSSSMIWELIKLNS--- 675
Query: 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDW-DTTQREVKKITILFCCAAVIT 751
P+W Y + G+I A++AGAQ PLF++G++ L A+Y + + +R+V+K+ I+F A ++T
Sbjct: 676 PEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAGAGIVT 735
Query: 752 VIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLR 811
++ ++H + +MGERLT RVR +FSAILSNEIGWFD +N++ L S L +DATL+R
Sbjct: 736 APIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVR 795
Query: 812 TIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL 871
+ + DR + ++QN L + +AF +WR+ VV A +PL+I+ ++E+LF +G+GG+
Sbjct: 796 SALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDY 855
Query: 872 SKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQ 931
++AY +A +A EA++NIRTVAA+ +E ++ E ++ EL +P+K +F+RG I+G YG+SQ
Sbjct: 856 TRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFGYGLSQ 915
Query: 932 FFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAA 991
F F SY L LWY SVL+ + +F +KSFMVLIVTA ++ ETLAL PD++KG Q
Sbjct: 916 FLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKGTQALG 975
Query: 992 SVFEVLDRKTQVIGDIGEE--LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSM 1049
SVF VL R+T++ D ++ V+G IE R V F YP+RPE+ IFK+ NL+V AGKS+
Sbjct: 976 SVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLNLRVSAGKSL 1035
Query: 1050 ALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATS 1109
A+VG SGSGKSTV+ LI+RFYDP+ G + +DG DIK LNL+SLRK +ALVQQEPALF+T+
Sbjct: 1036 AVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQQEPALFSTT 1095
Query: 1110 IYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169
IYENI YG + ASE E++EAAK ANAH FI + EGY T G++GVQLSGGQKQRVAIAR
Sbjct: 1096 IYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGGQKQRVAIAR 1155
Query: 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIES 1229
AVLK+P +LLLDEATSALD SE++VQ+AL +LM+ RTT++VAHRLSTI+ AD ++V+
Sbjct: 1156 AVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHK 1215
Query: 1230 GKIIEQGTHSSLVENEDGAYFKLINLQQ 1257
G+++E+G+H LV +G Y +L +LQ+
Sbjct: 1216 GRVVEKGSHRELVSIPNGFYKQLTSLQE 1243
|
|
| TAIR|locus:2010444 ABCB14 "ATP-binding cassette B14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2991 (1057.9 bits), Expect = 8.3e-312, P = 8.3e-312
Identities = 608/1223 (49%), Positives = 832/1223 (68%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
VSL LF+ AD DY LM LG +G C+HG ++P+FF+FFG +++ +G P S +V
Sbjct: 31 VSLMGLFSAADNVDYFLMFLGGLGTCIHGGTLPLFFVFFGGMLDSLGKLSTDPNAISSRV 90
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
++ +L VYL + L S+WI V+CWM TGERQ A++R+ YL+S+L +DI+ FDTEA
Sbjct: 91 SQNALYLVYLGLVNLVSAWIGVACWMQTGERQTARLRINYLKSILAKDITFFDTEARDSN 150
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
I I+SD I+VQDA+ +K G+ + Y+ +F+ GF+IGF VWQ++L+TL +VPLIA+AGG
Sbjct: 151 FIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGG 210
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
YA V + + +Y AG++AEEV+ VRTV AF GE+KAVK Y +L
Sbjct: 211 GYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLSKR 270
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
+ +NG ++FTT+LNV+ +G +LGQA P
Sbjct: 271 SGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAVP 330
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASS-KTGRKLDKLSGHIEFKDVSFCYPSRPDVAI 399
++A + + AA IF+MI + + + + G L + G IEF VSF YPSRP++ +
Sbjct: 331 SLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFAYPSRPNM-V 389
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
F+ I +GK A VG SGSGKST+IS+++RFYEP SGEILLDGN+IK L LKWLR+Q
Sbjct: 390 FENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQ 449
Query: 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
+GLV+QEPALFATTI NIL GK+ A M++I AAK + A SFI +LP + TQVGE G
Sbjct: 450 MGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGT 509
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
QLSGGQKQRIAI+RA+++NP ILLLDEATSALDAESE VQ+ALD VM RTT+V+AHRL
Sbjct: 510 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRL 569
Query: 580 STIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXXXXXXXXCPNMGRPL 639
STIRN D I V++ ++ +TGSH ELIS YA LV R
Sbjct: 570 STIRNVDKIVVLRDGQVRETGSHSELISRGGD-YATLVNCQDTEPQENLRSVMYESCRSQ 628
Query: 640 SIKFS--RELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTY 697
+ +S R S RTS SFR ++E + +++ IKL + P+W Y
Sbjct: 629 AGSYSSRRVFSSRRTS---SFREDQEKTEKDSKGEDLISSSSMIWELIKLNA---PEWLY 682
Query: 698 GVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTT-QREVKKITILFCCAAVITVIVHA 756
+ G+I A++AG+Q LF++G++ L +Y + + +REV K+ I+F A ++T ++
Sbjct: 683 ALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVGAGIVTAPIYI 742
Query: 757 IEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVD 816
++H + +MGERLT RVR +FSAILSNEIGWFD +N++ L S L +DATL+R+ + D
Sbjct: 743 LQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSAIAD 802
Query: 817 RSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYL 876
R + ++QN L + +AF +WR+ VV A +PL+I+ ++E+LF +G+GG+ ++AY
Sbjct: 803 RLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYS 862
Query: 877 KANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFS 936
+A LA EA+SNIRTVAAF +E ++ E ++ EL +P+K + +RG I+G YG+SQ F
Sbjct: 863 RATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGYGLSQCLAFC 922
Query: 937 SYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEV 996
SY L LWY SVL+ + +F+ +KSFMVL+VTA ++ ETLAL PD++KG Q SVF V
Sbjct: 923 SYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKGTQALGSVFRV 982
Query: 997 LDRKTQVIGDIGEE--LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQ 1054
L R+T++ D +T+++G IE R V F+YP+RPE+ IFK+ NL+V AGKS+A+VG
Sbjct: 983 LHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSAGKSLAVVGP 1042
Query: 1055 SGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENI 1114
SGSGKSTV+ LI+RFYDP+ G + +DG DIK +NL+SLRK +ALVQQEPALF+TSI+ENI
Sbjct: 1043 SGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPALFSTSIHENI 1102
Query: 1115 LYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174
YG + ASE E+IEAAK ANAH FIS + EGY T VG++GVQLSGGQKQRVAIARAVLK+
Sbjct: 1103 KYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRVAIARAVLKD 1162
Query: 1175 PEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIE 1234
P +LLLDEATSALD +E+ VQ+AL +LM+ RTTI+VAHRLSTI+ AD I V+ GK++E
Sbjct: 1163 PSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVE 1222
Query: 1235 QGTHSSLVENEDGAYFKLINLQQ 1257
+G+H LV DG Y KL +LQ+
Sbjct: 1223 KGSHRELVSKSDGFYKKLTSLQE 1245
|
|
| UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2727 (965.0 bits), Expect = 7.8e-284, P = 7.8e-284
Identities = 550/1186 (46%), Positives = 789/1186 (66%)
Query: 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAK 102
L +LF+FAD DY+LM+LG++GA VHG S+PVF FF L++ G P T V K
Sbjct: 95 LRQLFSFADGLDYVLMTLGTLGALVHGCSLPVFLRFFADLVDSFGSHAAHPDTMLRLVVK 154
Query: 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVI 162
Y+ F+ + AI SSW E+SCWM+TGERQ+ +MR+ YL + L+QD+S FDT+ T +VI
Sbjct: 155 YAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIRYLHAALHQDVSFFDTDVRTSDVI 214
Query: 163 SAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222
AI +D +VVQDA+SEK+GN +HY++ F+ GF++GF WQ++LVTL++VPLIA+ GG+
Sbjct: 215 HAINADAVVVQDAISEKLGNLIHYLATFVSGFVVGFTAAWQLALVTLAVVPLIAVIGGLS 274
Query: 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXXXX 282
A L +R + + A IAE+ + +R VQ+F GE++ ++ Y AL+
Sbjct: 275 AAALAKLSSRSQDALSDASGIAEQALAQIRIVQSFVGEERVMRAYSAALAVAQRIGYRSG 334
Query: 283 XXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAPDI 342
+ + +NGG + TM +V+I GL+LGQ+AP +
Sbjct: 335 FAKGIGLGGTYFTVFCCYALLLWYGGHLVRRAHTNGGLAIATMFSVMIGGLALGQSAPSM 394
Query: 343 TAFIRAKAAAYPIFEMIE-RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFD 401
AF +A+ AA IF M+E + +M + G +L+ ++G +E +DV F YPSRPDV I
Sbjct: 395 AAFAKARVAAAKIFRMMEHKPSMEREG---GVELEAVTGRVELRDVEFSYPSRPDVGILR 451
Query: 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461
L +PAGK +ALVG SGSGKSTV+SLIERFYEP +G ILLDG++++ L+L+WLR+QIG
Sbjct: 452 GLSLSVPAGKTIALVGSSGSGKSTVVSLIERFYEPNAGTILLDGHDLRDLNLRWLRRQIG 511
Query: 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521
LV+QEPALFATTIREN+L G+D AT EE+ AA+++ A SFI LP+ + TQVGERG+QL
Sbjct: 512 LVSQEPALFATTIRENLLLGRDGATQEELEEAARVANAHSFIVKLPDAYNTQVGERGLQL 571
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581
SGGQKQRIAI+RA+++NP+ILLLDEATSALD+ESE VQEALDR M+GRTT+V+AHRLST
Sbjct: 572 SGGQKQRIAIARAMLRNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLST 631
Query: 582 IRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVXXXXXXXXXXXXXXCPNMGRPLSI 641
IR AD++AV+QG I + G+H+EL++ + YA L+ + RP S
Sbjct: 632 IRKADLVAVLQGGAISEVGTHDELMARGDGTYARLIRMQEQAHEAALVAARRSSARPSSA 691
Query: 642 K--FSRELSGTRTSFGASFRSEKES----VLSHGAADATEPATAKHVSAI------KLYS 689
+ S + +S+G S S + S + G ++ +H + +L
Sbjct: 692 RNSVSSPIITRNSSYGRSPYSRRLSDADFITGLGLGVDSKQQQQQHYFRVQASSFWRLAK 751
Query: 690 MVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTTQREVKKITILFCCAA 748
M P+W Y + ++ +++ G+ +FA +S L YY D R++ K L +
Sbjct: 752 MNSPEWGYALVASLGSMVCGSFSAIFAYVLSAVLSVYYAPDAAYMDRQIAKYCYLLIGMS 811
Query: 749 VITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDAT 808
++ + ++HL + +GE LT RVRE+M +A+L NEI WFD DNSS+ +A+RL DA
Sbjct: 812 SAALLFNTVQHLFWDTVGENLTKRVRERMLAAVLRNEIAWFDMEDNSSARIAARLALDAQ 871
Query: 809 LLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYG 868
+R+ + DR +I++QN L+ + F+L WR+ LV++A +PL+++ + +K+F +G+
Sbjct: 872 NVRSAIGDRISIIVQNSALMLVACTAGFVLQWRLALVLLAVFPLVVAATVLQKMFLKGFS 931
Query: 869 GNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYG 928
G+L +A+ +A +A EAV+N+RTVAAF SE K++ L+ L P +R F +GQIAG YG
Sbjct: 932 GDLERAHARATQIAGEAVANVRTVAAFGSEAKIVGLFEANLAGPLRRCFWKGQIAGSGYG 991
Query: 929 ISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQ 988
++QF +++SY L LWY + L+ ++ F ++ FMVL+V+A ETL L PD +KG +
Sbjct: 992 VAQFLLYASYALGLWYAAWLVKHGVSDFSKTIRVFMVLMVSANGAAETLTLAPDFVKGGR 1051
Query: 989 MAASVFEVLDRKTQVIGDIGEELTNVE---GTIELRGVHFSYPSRPEVVIFKDFNLKVRA 1045
+VFE +DR+T++ D + E G +EL+ V F+YPSRPEV +F+D +L+ RA
Sbjct: 1052 AMQAVFEAMDRRTEIEPDDVDAAAVPERPRGEVELKHVDFAYPSRPEVQVFRDLSLRARA 1111
Query: 1046 GKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPAL 1105
G+++ALVG SG GKS+VL+L+ RFY+P +G+V++DG D+++ NL+SLR+ +ALV QEP L
Sbjct: 1112 GRTLALVGASGCGKSSVLALVQRFYEPNSGRVLLDGRDLRKFNLRSLRRAMALVPQEPFL 1171
Query: 1106 FATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165
FA +I++NI YG++GA+E EV+EAA ANAH FISALPEGY T VGERGVQLSGGQ+QR+
Sbjct: 1172 FAATIHDNIAYGREGATEAEVVEAATAANAHKFISALPEGYGTLVGERGVQLSGGQRQRI 1231
Query: 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIV 1211
AIARA++K ILLLDEATSALD ESER VQ+AL T IV
Sbjct: 1232 AIARALVKQAPILLLDEATSALDAESERSVQEALASSSGSGRTTIV 1277
|
|
| TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1345 (478.5 bits), Expect = 1.5e-274, Sum P(2) = 1.5e-274
Identities = 269/577 (46%), Positives = 379/577 (65%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
V +KLFAFAD +D++LM LG++G+ +G+ P+ + FG LI+ G + KV
Sbjct: 46 VPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGENQT---NTTDKV 102
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
+K +L FV+L + ++++++S WM +GERQAA++R YL+++L QDI+ FD + +TGE
Sbjct: 103 SKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGE 162
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
V+ ++ D +++QDA+ EKVG + ++ F+GGF+I F R W ++LV LS +PL+ +AG
Sbjct: 163 VVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGA 222
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTXXXXXX 280
+ A V +R + +Y KA + E+ IG++RTV +F GE +A+ Y + L
Sbjct: 223 LLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVI 282
Query: 281 XXXXXXXXXXSMHCXXXXXXXXXXXXXXXXXHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
++ GG+ ++ V+ +SLGQ +P
Sbjct: 283 EGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSP 342
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400
++AF +AAAY +FE IER + S G+ LD + G IE KDV F YP+RPD IF
Sbjct: 343 CLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIF 402
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
F L I +G VALVG SGSGKSTV+SLIERFY+P +G++L+DG N+K LKW+R +I
Sbjct: 403 RGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKI 462
Query: 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
GLV+QEP LF +I++NI YGK+DAT EEI AA+L+ A F+ LP+ +T VGE G Q
Sbjct: 463 GLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQ 522
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQKQRIA++RAI+K+P ILLLDEATSALDAESE VQEALDR+MV RTTVVVAHRLS
Sbjct: 523 LSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLS 582
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617
T+RNAD+IAV+ KIV+ GSH EL+ +P AY+ L+
Sbjct: 583 TVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLI 619
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P36619 | PMD1_SCHPO | No assigned EC number | 0.3497 | 0.9652 | 0.8964 | yes | no |
| Q9SGY1 | AB10B_ARATH | No assigned EC number | 0.7695 | 0.9628 | 0.9926 | no | no |
| P06795 | MDR1B_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.3839 | 0.9541 | 0.9459 | yes | no |
| P21448 | MDR1_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.3751 | 0.9462 | 0.9380 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.3743 | 0.9770 | 0.9656 | yes | no |
| Q8LPK2 | AB2B_ARATH | No assigned EC number | 0.7894 | 0.9849 | 0.9787 | yes | no |
| Q54BT3 | ABCB2_DICDI | No assigned EC number | 0.4052 | 0.9628 | 0.8718 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1265 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-138 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-136 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-136 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-127 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-123 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-120 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-119 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-117 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-116 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-115 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-109 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-106 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-105 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-102 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-99 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-95 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-93 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-92 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-91 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-89 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-88 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-86 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-84 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-83 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-82 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-79 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-79 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-78 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-78 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-78 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-76 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-75 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-74 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-74 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-72 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-71 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-70 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-69 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-69 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-67 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-66 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-65 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 5e-65 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-64 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-64 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 8e-64 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-62 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-62 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-62 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-62 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-61 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-59 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-59 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 8e-58 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-55 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-55 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-55 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-54 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-52 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-51 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-51 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-50 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-50 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-50 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-50 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-47 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-47 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-47 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-47 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-46 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-46 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-45 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-45 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-45 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-44 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-44 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-44 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-44 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-43 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-43 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-43 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 8e-43 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-43 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-42 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-42 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-42 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-42 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-42 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-42 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-42 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-42 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-41 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-41 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-41 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-41 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-41 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-41 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-40 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-40 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-40 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-40 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-40 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-40 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-40 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-40 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-40 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-40 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-39 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-39 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-39 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-39 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-39 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-38 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-38 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-38 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-38 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-38 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-38 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-38 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-37 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-37 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-37 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-37 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-37 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-37 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-37 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-37 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 8e-37 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-36 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-36 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-36 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-36 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-36 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-35 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-35 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-35 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-35 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-35 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-35 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-35 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-35 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-35 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-35 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-35 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-34 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-34 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-34 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-34 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 9e-34 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-33 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-33 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-33 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-33 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-33 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-33 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-33 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-33 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-33 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-33 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-33 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-33 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-32 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-32 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-32 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-32 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-32 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-32 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-32 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-32 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-32 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-32 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-32 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-32 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-32 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 8e-32 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-32 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-31 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-31 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-31 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-31 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-31 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-31 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-31 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-31 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-31 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-31 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-31 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-31 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 8e-31 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 9e-31 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-30 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-30 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-30 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-30 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-30 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-30 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-30 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-30 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-30 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-30 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-30 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 6e-30 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-30 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-30 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-29 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-29 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-29 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-29 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-29 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-29 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-29 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-29 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 5e-29 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-29 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-28 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-28 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-28 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-28 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-28 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-28 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-28 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-28 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-28 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-28 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-28 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 7e-28 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-28 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 8e-28 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 8e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-27 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-27 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-27 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-27 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-27 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-27 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-27 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-27 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-27 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-27 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-27 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-27 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-27 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-27 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-27 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-27 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-27 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-27 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-27 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-27 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-27 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-27 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-27 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-27 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-27 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-27 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 6e-27 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-27 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-27 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 7e-27 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 7e-27 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-27 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-27 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-27 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-26 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-26 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-26 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-26 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-26 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-26 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-26 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-26 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-26 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-26 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-26 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-26 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-26 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-26 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-26 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-26 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-26 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-26 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-26 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-26 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-26 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-26 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-25 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-25 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-25 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-25 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-25 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-25 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-25 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-25 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-25 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-25 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-25 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-25 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-25 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-25 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-25 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-25 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-25 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-25 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-25 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-25 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-25 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-25 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-25 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-25 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-25 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-25 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-25 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-25 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-25 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-25 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-25 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-25 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 8e-25 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 8e-25 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-24 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-24 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-24 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-24 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-24 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-24 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-24 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-24 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-24 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-24 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-24 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-24 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-24 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 8e-24 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 9e-24 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-23 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-23 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-23 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-23 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-23 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-23 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-23 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-23 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-23 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-23 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-23 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-23 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-23 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-23 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-23 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-23 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-23 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-23 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-23 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-23 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-23 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-23 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-23 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-23 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 5e-23 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-23 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-23 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-23 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-23 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-23 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-23 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 8e-23 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-23 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-23 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-22 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-22 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-22 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-22 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-22 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-22 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-22 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-22 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-22 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-22 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-22 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-22 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-22 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-22 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-22 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-22 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-22 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-22 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-22 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-22 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-22 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 9e-22 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 9e-22 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-21 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-21 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-21 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-21 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-21 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-21 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-21 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-21 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-21 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-21 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-21 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-21 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-21 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-21 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-21 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 7e-21 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-21 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 8e-21 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 8e-21 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 8e-21 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-21 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-21 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-21 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-20 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-20 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-20 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-20 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-20 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-20 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-20 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-20 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-20 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-20 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-20 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-20 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-20 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 6e-20 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-20 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-20 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-20 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-19 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-19 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-19 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-19 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-19 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-19 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-19 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-19 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-19 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-19 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-19 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-19 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-19 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 5e-19 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-19 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 6e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-19 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 6e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-19 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 8e-19 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 9e-19 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-18 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-18 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-18 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-18 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-18 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-18 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-18 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-18 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-18 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-18 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 7e-18 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-18 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-17 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-17 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-17 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-17 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-17 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-17 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-17 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-17 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-17 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-17 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-17 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-17 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 9e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-17 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 9e-17 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-16 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-16 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-16 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-16 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-16 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-16 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-16 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-16 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-16 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-16 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 6e-16 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-16 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-16 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-16 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-16 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 9e-16 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-15 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-15 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-15 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-15 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-15 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-15 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-14 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-14 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-14 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-14 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-14 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-14 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-14 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-14 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-14 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-14 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-14 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-14 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-14 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-14 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 7e-14 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 9e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 9e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-13 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-13 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-13 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-13 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 5e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-13 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 6e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 7e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 8e-13 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 9e-13 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 9e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-12 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-12 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-12 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-12 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-12 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 6e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-11 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-11 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-11 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 4e-11 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-11 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-11 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 7e-11 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-10 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-10 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-10 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-10 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 5e-10 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-10 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 9e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-09 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-09 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 9e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 9e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 6e-08 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 7e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-08 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-07 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-07 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 1e-07 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-07 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 4e-07 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 5e-07 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 6e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 8e-07 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 8e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 2e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-06 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 4e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 5e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 8e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 9e-06 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 9e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 2e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 3e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 4e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 6e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 7e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 8e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 9e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 1e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 4e-04 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 5e-04 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 6e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.001 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.002 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.002 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.003 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.003 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 419 bits (1079), Expect = e-138
Identities = 147/239 (61%), Positives = 188/239 (78%), Gaps = 1/239 (0%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE + V F YPSRP+V I K +L + GK++ALVG SG GKSTV+SL+ RFYDPT+G++
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHS 1137
++DG+DI+ LNL+ LR I LV QEP LF +I ENI YGK A++ EV EAAK AN H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
FI +LP+GY T VGERG QLSGGQKQR+AIARA+L+NP+ILLLDEATSALD ESE++VQ+
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1198 ALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
AL R M+ RTTI++AHRLSTI+NAD I+V+++G+++EQGTH L+ G Y KL+ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 415 bits (1069), Expect = e-136
Identities = 159/239 (66%), Positives = 190/239 (79%), Gaps = 1/239 (0%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEFK+VSF YPSRPDV I L IP GK VALVG SG GKSTV+SL+ERFY+P SGEI
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
LLDG +I+ L+L+WLR QIGLV+QEP LF TI ENI YGK DAT EE+ AAK +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
FI +LP+ ++T VGERG QLSGGQKQRIAI+RA+++NP ILLLDEATSALDAESE VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
ALDR M GRTT+V+AHRLSTIRNAD+IAV+Q ++V+ G+H+EL++ YA LV+ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG-VYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 451 bits (1162), Expect = e-136
Identities = 381/1481 (25%), Positives = 648/1481 (43%), Gaps = 260/1481 (17%)
Query: 13 DYNNSSNNNNNNNTEDQESSKK-------QQQKRSVSLFKLFAFADFYDYILMSLGSIGA 65
D N+ N + + ++E +KK + + + + F F L+ + + A
Sbjct: 10 DNNSGGGNLSIKDEVEKELNKKGTFELYKKIKTQKIPFFLPFKCLPASHRKLLGVSFVCA 69
Query: 66 CVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCW 125
+ G ++P F FG ++ + L V V + + S+I C
Sbjct: 70 TISGGTLPFFVSVFGVIMKNMNLG--------ENVNDIIFSLVLIGIFQFILSFISSFCM 121
Query: 126 MYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN--- 182
+ +++ +L+S+ QD D S +TSD+ + ++ +G
Sbjct: 122 DVVTTKILKTLKLEFLKSVFYQDGQFHDNNPG-----SKLTSDLDFYLEQVNAGIGTKFI 176
Query: 183 -FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYV--- 238
Y S FLG +I + +++L + PLI + G V ++ K
Sbjct: 177 TIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICG-----VICNKKVKINKKTSLLY 231
Query: 239 --KAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296
I EE + +RTV ++ GE +K + + KY KA + L +G ++ +
Sbjct: 232 NNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFI 291
Query: 297 FLSWSLLVWYVSVVVHKHISN--------GGESFTTMLNVVIAGLSLGQAAPDITAFIRA 348
S++ WY + ++ +SN GG + +L V+I+ L P+IT ++++
Sbjct: 292 LASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKS 351
Query: 349 KAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIP 408
A ++E+I R + + ++ G+KL + I+FK+V F Y +R DV I+ +
Sbjct: 352 LEATNSLYEIINRKPLVE-NNDDGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLT 409
Query: 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL-DGNNIKGLDLKWLRQQIGLVNQEP 467
GK A VG SG GKST++ LIER Y+P G+I++ D +N+K ++LKW R +IG+V+Q+P
Sbjct: 410 EGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDP 469
Query: 468 ALFATTIRENILYG----KDDATMEE----------------ITRAAKLSEAMSFISN-- 505
LF+ +I+ NI Y KD + + AK + ++ +SN
Sbjct: 470 LLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTT 529
Query: 506 -----------------------------------LPERFETQVGERGIQLSGGQKQRIA 530
LP+++ET VG +LSGGQKQRI+
Sbjct: 530 DSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRIS 589
Query: 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVI 588
I+RAI++NP IL+LDEATS+LD +SE VQ+ ++ + R T+++AHRLSTIR A+ I
Sbjct: 590 IARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTI 649
Query: 589 AVVQGRK-----------------------------------------------IVKTGS 601
V+ R+ I++ G+
Sbjct: 650 FVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGT 709
Query: 602 HEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKF--------SRELSGTRTS 653
H+ L+ N N Y ++ Q+ +S++S+++ S + E++G
Sbjct: 710 HDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKH 769
Query: 654 FGASFRSEKESVLSHGAADATEPATA----------KHVSAIKLYSMVRPDWTYGVCGTI 703
S ++K +S A K + L + R ++Y TI
Sbjct: 770 ENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTI 829
Query: 704 CA---IIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHL 760
A ++AG P+FAL ++ V+ D+ + K ++ A+ I +++
Sbjct: 830 IALSILVAGGLYPVFALLYAK-YVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNY 888
Query: 761 SFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820
++GE++ ++ ++F IL EI +FD+ ++ +L++ + D LL+T +V+ I
Sbjct: 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVI 948
Query: 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLI-----ISGHISEKLFFQGYGGNLSKAY 875
L S V++F + V+ TY + I ++ + N
Sbjct: 949 FTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTV 1008
Query: 876 LKAN----------MLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925
N L EA N+ TV + ED L + + +K + + +
Sbjct: 1009 FAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSM 1068
Query: 926 FYGIS---QFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPD 982
+G S Q FI S A W+GS L+ + MKS + T G+ ++L D
Sbjct: 1069 LWGFSQSAQLFINS---FAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGD 1125
Query: 983 LLKGNQMAASVFEVLDRKT--QVIGDIGEELTN---VEGTIELRGVHFSYPSRPEVVIFK 1037
+ ++ RK+ V + G + N ++G IE+ V+F Y SRP V I+K
Sbjct: 1126 SENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYK 1185
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV------------------ 1079
D + K+ A+VG++GSGKSTV+SL++RFYD +V
Sbjct: 1186 DLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245
Query: 1080 --DGIDIKRLNLKSLRKHIALVQQEPA------------------------LFATSIYEN 1113
+ +K +N SL K + LF+ E
Sbjct: 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEP 1305
Query: 1114 ILY----------GKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163
+L+ GK+ A+ +V A K A FI +LP Y T VG G LSGGQKQ
Sbjct: 1306 MLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365
Query: 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK--RTTIIVAHRLSTIKNA 1221
R+AIARA+L+ P+ILLLDEATS+LD SE+++++ + + K +T I +AHR+++IK +
Sbjct: 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRS 1425
Query: 1222 DQISVI----ESGKIIE-QGTHSSLVENEDGAYFKLINLQQ 1257
D+I V +G ++ GTH L+ +DG Y K + L +
Sbjct: 1426 DKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLAK 1466
|
Length = 1466 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 404 bits (1040), Expect = e-127
Identities = 191/554 (34%), Positives = 314/554 (56%), Gaps = 21/554 (3%)
Query: 714 LFALGVSQALVAYYM-----DWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGER 768
L + L+ + E+ ++ +L A++ ++ A++ +G++
Sbjct: 23 LLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQK 82
Query: 769 LTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLV 828
+ +R +F +L + +FD S L SRL +D + +V ++ + L+
Sbjct: 83 IVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL 140
Query: 829 TASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANML----AAE 884
S V+ F L+WR+ L+++ PL+ LS+ +A E
Sbjct: 141 IGSLVLLFSLSWRLALILLLILPLLALVLS----LLARKSRKLSRRVREALGELNARLLE 196
Query: 885 AVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWY 944
++S IR + AF +ED+ L+ + E + + ++ + + L L
Sbjct: 197 SLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256
Query: 945 GSVLMGKELASFKSVMKSFMVLIVTAL-AMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003
G L+ + ++ +F++ ++ L + + +V L + + A +FE+LD + +V
Sbjct: 257 GGFLVLSGSLTVGALA-AFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEV 315
Query: 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVL 1063
D + L + G+IE V FSYP + + KD + + G+ +A+VG SGSGKST++
Sbjct: 316 E-DPPDPLKDTIGSIEFENVSFSYPGKK--PVLKDISFSIEPGEKVAIVGPSGSGKSTLI 372
Query: 1064 SLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASE 1123
L+LR YDPT+G++++DGIDI+ ++L SLRK I +V Q+P LF+ +I ENI G+ A++
Sbjct: 373 KLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD 432
Query: 1124 GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183
E+ EA KLANAH FI+ LP+GY T VGERGV LSGGQ+QR+AIARA+L+NP IL+LDEA
Sbjct: 433 EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEA 492
Query: 1184 TSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243
TSALD E+E ++Q AL++L++ RTT+I+AHRLSTIKNAD+I V+++G+I+E+GTH L+
Sbjct: 493 TSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA 552
Query: 1244 NEDGAYFKLINLQQ 1257
G Y +L Q
Sbjct: 553 K-GGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 392 bits (1009), Expect = e-123
Identities = 197/511 (38%), Positives = 299/511 (58%), Gaps = 39/511 (7%)
Query: 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQN 824
+GER+ +R +F+ ++S +FD+ N S + SRL +D TLL++++ ++ ++N
Sbjct: 85 LGERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRN 142
Query: 825 FGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKA-------YLK 877
+ ++ FI + ++T +V+ PL++ L +G + K
Sbjct: 143 ALMCIGGLIMMFITSPKLTSLVLLAVPLVL-------LPILLFGRRVRKLSRESQDRIAD 195
Query: 878 ANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSS 937
A A E + IRTV AF ED + + + + + R + + I +F +
Sbjct: 196 AGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGA 255
Query: 938 YGLALWYGS--VLMGK----ELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAA 991
LW G+ V+ GK L F V + MV A ++G + +L + A
Sbjct: 256 IVGVLWVGAHDVIAGKMSAGTLGQF--VFYAVMV----AGSIGTLSEVWGELQRAAGAAE 309
Query: 992 SVFEVLDRKTQVIGDIGEEL------TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRA 1045
+ E+L Q DI + G IE V+F+YP+RP+ NL VR
Sbjct: 310 RLIELL----QAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRP 365
Query: 1046 GKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPAL 1105
G+++ALVG SG+GKST+ L+LRFYDP +G++++DG+D+++L+ LR +ALV Q+P L
Sbjct: 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL 425
Query: 1106 FATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165
FA S+ ENI YG+ A++ EV AA+ A+AH FISALPEGY T +GERGV LSGGQ+QR+
Sbjct: 426 FAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485
Query: 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQIS 1225
AIARA+LK+ ILLLDEATSALD ESE++VQQAL+ LM+ RTT+I+AHRL+T+ AD+I
Sbjct: 486 AIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIV 545
Query: 1226 VIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
V++ G+I+ QGTH+ L+ + G Y +L LQ
Sbjct: 546 VMDQGRIVAQGTHAELIA-KGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 385 bits (990), Expect = e-120
Identities = 199/583 (34%), Positives = 323/583 (55%), Gaps = 17/583 (2%)
Query: 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKV 100
L +L + + +L L + + + + +P + G++I+ + ++
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLP---LLIGRIIDALLAD-------LGEL 51
Query: 101 AKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160
+ L + L++ ++ G++ A +R +L +S FD A +G+
Sbjct: 52 LELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGD 110
Query: 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220
+IS +T+D+ V + +S + I +G ++ F+ W+++L+ L I+PL+AL
Sbjct: 111 LISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS 170
Query: 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280
+ A + L RVR++ + E + +R ++AF ED+ +K ++EA + +
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAP 340
A + L M + L L++ +V G +L ++ + Q
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGE 290
Query: 341 DITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400
++ RA AAA +FE++ D + L G IEF++VSF YP + V
Sbjct: 291 VVSLLQRASAAAERLFELL--DEEPEVEDPPD-PLKDTIGSIEFENVSFSYPGKKPV--L 345
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
I G+ VA+VG SGSGKST+I L+ R Y+P SGEIL+DG +I+ + L LR++I
Sbjct: 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405
Query: 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
G+V+Q+P LF+ TIRENI G+ DAT EEI A KL+ A FI+NLP+ ++T VGERG+
Sbjct: 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS 580
LSGGQ+QR+AI+RA+++NP IL+LDEATSALD E+E +Q+AL +++ GRTT+++AHRLS
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 581 TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAA 623
TI+NAD I V+ +IV+ G+HEEL++ YA L Q Q A
Sbjct: 526 TIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 386 bits (992), Expect = e-119
Identities = 203/594 (34%), Positives = 328/594 (55%), Gaps = 26/594 (4%)
Query: 31 SSKKQQQKRSVSLFKLFAFA--DFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGL 88
+++ Q + + LF+L + D+ I + + + + +P F+ G++I+ +G
Sbjct: 137 EAEQGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIP-FYT--GRVIDTLGG 193
Query: 89 AYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQD 148
P AS A + + LS+A S+ + + YT R ++R RS+L QD
Sbjct: 194 DKGPPALAS---AIFFMCL--LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQD 248
Query: 149 ISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVT 208
+ FD E TGE+ S ++SD + +LS V + + LG ++++VT
Sbjct: 249 LGFFD-ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVT 307
Query: 209 LSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYK 268
L +PL+ LA ++ L ++++ KA ++AEE + +RTV++FA E+ +K
Sbjct: 308 LINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFK 367
Query: 269 EALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWY-VSVVVHKHISNGGESFTTMLN 327
EAL T + ++ LA L + + L L+++Y +V+ +S+G +++
Sbjct: 368 EALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGN-----LVS 422
Query: 328 VVIAGLSLGQAAPDITAF----IRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIE 383
++ LG+A ++ ++A A+ +FE ++R + L G IE
Sbjct: 423 FLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG--TLAPLNLEGLIE 480
Query: 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443
F+DVSF YP+RPDV + + G++VALVG SGSGKSTV +L++ Y+P G++LL
Sbjct: 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540
Query: 444 DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFI 503
DG + D +L +Q+ LV QEP LF+ ++RENI YG D EEI AAK + A FI
Sbjct: 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFI 600
Query: 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
P ++T+VGE+G QLSGGQKQRIAI+RA+V+ P +L+LDEATSALDAE E +QE
Sbjct: 601 MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-- 658
Query: 564 DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617
R RT +++AHRLST+ AD I V++ +V+ G+H++L+ + Y LV
Sbjct: 659 SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG-CYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 363 bits (934), Expect = e-117
Identities = 135/235 (57%), Positives = 180/235 (76%), Gaps = 2/235 (0%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E + V F YP V+ +D +L + AG+++ALVG SGSGKST+++LI RFYD +G++
Sbjct: 1 VEFKNVTFRYPGDGPPVL-RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHS 1137
++DG D++ L SLR+ I LV Q+ LF ++ ENI YG+ GA+ EV EAA+ ANAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
FI LPEGY T +GERGV+LSGGQ+QR+AIARA+LK+P IL+LDEATSALD ESER+VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1198 ALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKL 1252
AL+RLM+ RTT ++AHRLSTI+NAD+I V+E GKI+E+GTH L+ + G Y KL
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA-QGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 379 bits (975), Expect = e-116
Identities = 198/583 (33%), Positives = 311/583 (53%), Gaps = 48/583 (8%)
Query: 685 IKLYSMVRPDWTYGVCG---TICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKIT 741
+L + DW + + + + +P + V L D +
Sbjct: 150 FRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGG-----DKGPPALASAI 204
Query: 742 ILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILAS 801
C ++ + + + SF R+ LR+RE +F ++L ++G+FDE N + L S
Sbjct: 205 FFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTS 262
Query: 802 RLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEK 861
RL SD + + +L++N ++ L+ R+T+V + PL+ ++EK
Sbjct: 263 RLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF---LAEK 319
Query: 862 LFFQGYGGNLSK----AYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSF 917
+F + Y LS+ A KAN +A EA+S +RTV +F +E+ + +E +E + +
Sbjct: 320 VFGKRYQ-LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRF-KEALEETLQLN 377
Query: 918 IRGQIAGIFY----GISQFFIFSSYGLALWYGS--VLMGK----ELASFKSVMKSFMVLI 967
R +A Y + I L L+YG VL GK L SF +
Sbjct: 378 KRKALAYAGYLWTTSVLGMLIQV---LVLYYGGQLVLTGKVSSGNLVSF----------L 424
Query: 968 VTALAMGETL----ALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGV 1023
+ +GE + + +++ + VFE LDRK + N+EG IE + V
Sbjct: 425 LYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDV 484
Query: 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID 1083
FSYP+RP+V + K + G+ +ALVG SGSGKSTV +L+ Y PT G+V++DG+
Sbjct: 485 SFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 544
Query: 1084 IKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALP 1143
+ + + L + +ALV QEP LF+ S+ ENI YG + E++ AAK ANAH FI P
Sbjct: 545 LVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFP 604
Query: 1144 EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM 1203
GY T+VGE+G QLSGGQKQR+AIARA+++ P +L+LDEATSALD E E+++Q++ R
Sbjct: 605 NGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR-- 662
Query: 1204 RKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENED 1246
RT +++AHRLST++ ADQI V++ G ++E GTH L+E++
Sbjct: 663 ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 371 bits (955), Expect = e-115
Identities = 198/537 (36%), Positives = 297/537 (55%), Gaps = 18/537 (3%)
Query: 92 FPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISL 151
F K +S + +Y + +++ + + + GER A +R A +++ S
Sbjct: 49 FSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSF 108
Query: 152 FDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSI 211
FD +GEV+S +T+D ++Q + + + +GG I+ F +++ + L
Sbjct: 109 FDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167
Query: 212 VPLIALAGGMYAYVTIGLIARVRK-------SYVKAGEIAEEVIGNVRTVQAFAGEDKAV 264
VPL+ L ++ RVRK AG A E +G +RTVQAF ED
Sbjct: 168 VPLVLLPILLFG-------RRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAER 220
Query: 265 KVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWY-VSVVVHKHISNGGESFT 323
+ A+ Y+ R+ + L + ++F + ++W V+ +S G
Sbjct: 221 SRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMS-AGTLGQ 279
Query: 324 TMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIE 383
+ V+ S+G + RA AA + E+++ + KA + L G IE
Sbjct: 280 FVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIE 339
Query: 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443
F+ V+F YP+RPD D L + G+ VALVG SG+GKST+ L+ RFY+P SG ILL
Sbjct: 340 FEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399
Query: 444 DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFI 503
DG +++ LD LR ++ LV Q+P LFA ++ ENI YG+ DAT EE+ AA+ + A FI
Sbjct: 400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFI 459
Query: 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
S LPE ++T +GERG+ LSGGQ+QRIAI+RAI+K+ ILLLDEATSALDAESE VQ+AL
Sbjct: 460 SALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL 519
Query: 564 DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
+ +M GRTT+++AHRL+T+ AD I V+ +IV G+H ELI+ YA L +LQ
Sbjct: 520 ETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 354 bits (910), Expect = e-109
Identities = 183/594 (30%), Positives = 299/594 (50%), Gaps = 46/594 (7%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFC 745
+L+S VRP V + I+ A A AL+ +D R+ + +
Sbjct: 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLA-----ALLKPLLDDGFGGRDRSVL--WWV 56
Query: 746 CAAVITVIV-----HAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILA 800
VI + V + + ++ +R +MF +L + +FD + L
Sbjct: 57 PLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLL 114
Query: 801 SRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI--ISGHI 858
SR+ D+ + + D +L++ V F++ +W++TL+VV P++ + +
Sbjct: 115 SRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRV 174
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELY---SRELVEPSKR 915
S++ + + + + +A E + R V F + + S + +
Sbjct: 175 SKR--LRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK 232
Query: 916 SFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKS-----FMVLIVTA 970
I I+Q + + L+ +A F++ S F I
Sbjct: 233 M---TSAGSISSPITQLIASLALAVVLF---------IALFQAQAGSLTAGDFTAFITAM 280
Query: 971 LAMGETLALVPD----LLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFS 1026
+A+ L + + + +G A S+F +LD + G +E R V F
Sbjct: 281 IALIRPLKSLTNVNAPMQRGLAAAESLFTLLD-SPPEKDTGTRAIERARGDVEFRNVTFR 339
Query: 1027 YPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKR 1086
YP R + +L + G+++ALVG+SGSGKST+++LI RFY+P +G++++DG D+
Sbjct: 340 YPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398
Query: 1087 LNLKSLRKHIALVQQEPALFATSIYENILYGK-DGASEGEVIEAAKLANAHSFISALPEG 1145
L SLR+ +ALV Q+ LF +I NI YG+ + A E+ A A A F+ LP G
Sbjct: 399 YTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLG 458
Query: 1146 YSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK 1205
T +GE GV LSGGQ+QR+AIARA+LK+ IL+LDEATSALD ESER+VQ AL+RLM+
Sbjct: 459 LDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQG 518
Query: 1206 RTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQ 1259
RTT+++AHRLSTI+ AD+I V++ G+I+E+GTH+ L+ +G Y +L N+Q R+
Sbjct: 519 RTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA-RNGLYAQLHNMQFRE 571
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 333 bits (857), Expect = e-106
Identities = 128/240 (53%), Positives = 172/240 (71%), Gaps = 5/240 (2%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE V F+Y P RP + KD + + AGK +A+VG SGSGKST+L L+ RFYD ++G
Sbjct: 1 IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAH 1136
+++DG DI+ + L SLR+ I +V Q+ LF +I NI YG+ A++ EVIEAAK A H
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIH 117
Query: 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQ 1196
I P+GY T VGERG++LSGG+KQRVAIARA+LKNP ILLLDEATSALD +ER +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1197 QALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
AL+ + + RTTI++AHRLSTI NAD+I V++ G+I+E+GTH L+ + G Y ++ Q
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 331 bits (852), Expect = e-105
Identities = 131/235 (55%), Positives = 173/235 (73%), Gaps = 2/235 (0%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+EFK+V+F YP + LDIPAG+ VALVG SGSGKST+++LI RFY+ SG I
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
L+DG++++ L LR+QIGLV+Q+ LF T+ ENI YG+ AT EE+ AA+ + A
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
FI LPE ++T +GERG++LSGGQ+QRIAI+RA++K+P IL+LDEATSALD ESE VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
AL+R+M RTT V+AHRLSTI NAD I V++ KIV+ G+HEEL++ YA L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 341 bits (876), Expect = e-102
Identities = 178/534 (33%), Positives = 284/534 (53%), Gaps = 36/534 (6%)
Query: 740 ITILFCCAAVI-TVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSI 798
+ I AA+ ++ +L +G+RL L + + F +L + +F E + I
Sbjct: 196 LAIGLLLAALFEALLRLLRTYL-IAHLGKRLDLELSGRFFRHLLRLPLSYF-EKRSVGEI 253
Query: 799 LASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPL-IISGH 857
+ SR+ + + T++I + + F+ +W++TL+V+A PL ++
Sbjct: 254 I-SRVRELEQIREFLTGSILTLII-DLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT- 310
Query: 858 ISEKLFFQGYGGNLSKAYLKANMLAA-------EAVSNIRTVAAFCSEDKVLELYSRELV 910
L FQ L + K +A E + I TV A +E + + L
Sbjct: 311 ----LIFQPL---LRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLA 363
Query: 911 EPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGK------ELASFKSVMKSFM 964
+ F ++A I I S L LW+G++L+ + +L +F + F+
Sbjct: 364 KQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFI 423
Query: 965 VLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD-IGEELTNVEGTIELRGV 1023
I + + + ++LD + GD L ++G IE V
Sbjct: 424 SPITRLSQLWTDFQQA---KVALER---LGDILDTPPEQEGDKTLIHLPKLQGEIEFENV 477
Query: 1024 HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID 1083
F Y V+ +D +L++ G+ +A+VG+SGSGKST+L L+L Y P G++++DG+D
Sbjct: 478 SFRYGPDDPPVL-EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 1084 IKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALP 1143
+ ++L SLR+ + V Q+P LF+ SI ENI G A++ E+IEAA+LA AH FI LP
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 1144 EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM 1203
GY T VGE G LSGGQ+QR+A+ARA+L P+ILLLDEATSALD E+E ++ Q L +++
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 1204 RKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQ 1257
+ RT II+AHRLSTI++AD+I V++ GKI+EQG+H L+ + G Y +L Q+
Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL-AQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = 9e-99
Identities = 118/228 (51%), Positives = 174/228 (76%), Gaps = 2/228 (0%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G IE V+FSY + + KD N ++ G+++A+VG +G+GK+T+++L++RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1076 KVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANA 1135
++++DGIDI+ ++ KSLR I +V Q+ LF+ +I ENI G+ A++ EVIEAAK A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVV 1195
H FI LP GY T +GE G LS G++Q +AIARA+L++P+IL+LDEATS +D E+E+++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 1196 QQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243
Q+AL++LM+ RT+II+AHRLSTIKNAD+I V++ GKIIE+GTH L+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 316 bits (811), Expect = 6e-95
Identities = 172/490 (35%), Positives = 268/490 (54%), Gaps = 13/490 (2%)
Query: 135 KMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGF 194
+R+ +L +S FD TG ++S IT D V A ++ + +G F
Sbjct: 88 DIRVRMFEKLLGLPVSFFD-RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLF 146
Query: 195 IIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTV 254
I+ WQ++L+ + ++P++++ + + ++ S + +AEE + R V
Sbjct: 147 IVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVV 206
Query: 255 QAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKH 314
+ F G+ + + + + K A + + L+ +++++
Sbjct: 207 KLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAG 266
Query: 315 ISNGGE--SFTTMLNVVIAGL-SLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKT 371
G+ +F T + +I L SL R AAA +F ++ D+ + + T
Sbjct: 267 SLTAGDFTAFITAMIALIRPLKSLTNVN---APMQRGLAAAESLFTLL--DSPPEKDTGT 321
Query: 372 GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431
R +++ G +EF++V+F YP R D D L I G+ VALVG SGSGKST+++LI
Sbjct: 322 -RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379
Query: 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK-DDATMEEI 490
RFYEP SG+ILLDG+++ L LR+Q+ LV+Q+ LF TI NI YG+ + A EI
Sbjct: 380 RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
RA + A F+ LP +T +GE G+ LSGGQ+QR+AI+RA++K+ IL+LDEATSA
Sbjct: 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499
Query: 551 LDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610
LD ESE VQ AL+R+M GRTT+V+AHRLSTI AD I V+ +IV+ G+H EL++ N
Sbjct: 500 LDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-N 558
Query: 611 SAYAALVQLQ 620
YA L +Q
Sbjct: 559 GLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 299 bits (769), Expect = 1e-93
Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 5/240 (2%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
IEF++V+F Y P RP + IPAGK VA+VG SGSGKST++ L+ RFY+ SG
Sbjct: 1 IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
IL+DG +I+ + L LR+ IG+V Q+ LF TI NI YG+ DAT EE+ AAK ++
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIH 117
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
I P+ ++T VGERG++LSGG+KQR+AI+RAI+KNP ILLLDEATSALD +E +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
AL V GRTT+V+AHRLSTI NAD I V++ +IV+ G+HEEL+ YA + + Q
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 312 bits (802), Expect = 4e-92
Identities = 181/506 (35%), Positives = 279/506 (55%), Gaps = 25/506 (4%)
Query: 126 MYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMH 185
+ G+R ++ + R +L +S F+ S GE+IS + ++ +++ L+ G+ +
Sbjct: 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGEIISRV-RELEQIREFLT---GSILT 273
Query: 186 YISRFLGGFIIGFARV-----WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKA 240
I L F + F V W+++L+ L+ +PL L L + RK ++
Sbjct: 274 LIIDLL--FALIFLAVMFLYSWKLTLIVLAAIPLNVLIT---LIFQPLLRRKTRKLIEES 328
Query: 241 GEIAE---EVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLF 297
E E I + TV+A A E + + L+ G K + +
Sbjct: 329 AEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQ 388
Query: 298 LSWSLLVWY-VSVVVHKHISNGG-ESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPI 355
LS L++W+ +V+ ++ G +F + I+ ++ + + T F +AK A +
Sbjct: 389 LSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPIT--RLSQLWTDFQQAKVALERL 446
Query: 356 FEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVAL 415
++++ + KT L KL G IEF++VSF Y + D L+IP G+ VA+
Sbjct: 447 GDILDTPPEQE-GDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLED-LSLEIPPGEKVAI 504
Query: 416 VGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475
VG SGSGKST++ L+ Y+P G ILLDG ++ +DL LR+Q+G V Q+P LF+ +IR
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564
Query: 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535
ENI G +AT EEI AA+L+ A FI NLP ++T VGE G LSGGQ+QR+A++RA+
Sbjct: 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL 624
Query: 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595
+ P ILLLDEATSALD E+E + + L +++ GRT +++AHRLSTIR+AD I V+ K
Sbjct: 625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGK 684
Query: 596 IVKTGSHEELISNPNSAYAALVQLQE 621
IV+ GSHEEL+ YA L Q QE
Sbjct: 685 IVEQGSHEELL-AQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 292 bits (751), Expect = 4e-91
Identities = 106/227 (46%), Positives = 160/227 (70%), Gaps = 2/227 (0%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G IEF++V+F Y + I G+ VA+VG +G+GK+T+I+L+ RFY+P G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
+IL+DG +I+ + K LR IG+V Q+ LF+ TI ENI G+ +AT EE+ AAK + A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
FI LP ++T +GE G LS G++Q +AI+RA++++P IL+LDEATS +D E+E +
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606
QEAL+++M GRT++++AHRLSTI+NAD I V+ KI++ G+H+EL+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 9e-89
Identities = 173/496 (34%), Positives = 284/496 (57%), Gaps = 27/496 (5%)
Query: 136 MRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFI 195
MR M+ +S FD + STG ++S IT D V + S + + + +G FI
Sbjct: 100 MRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFI 158
Query: 196 IGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVK-----AGEI---AEEV 247
+ F WQ+SL+ + I P++++A I ++++ ++ K G++ AE++
Sbjct: 159 MMFYYSWQLSLILIVIAPIVSIA--------IRVVSKRFRNISKNMQNTMGQVTTSAEQM 210
Query: 248 IGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYV 307
+ + V F G++ K + + + + G K A + + + L+ + +++
Sbjct: 211 LKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAA 270
Query: 308 SV-VVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITA-FIRAKAAAYPIFEMIERDTMS 365
S V ++ G + T + + +IA + ++ ++ A F R AA +F +++ +
Sbjct: 271 SFPSVMDTLTAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ-E 327
Query: 366 KASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKST 425
K K R +++ G IEF++V+F YP + A+ IPAGK VALVG SGSGKST
Sbjct: 328 KDEGK--RVIERAKGDIEFRNVTFTYPGKEVPAL-RNINFKIPAGKTVALVGRSGSGKST 384
Query: 426 VISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDA 485
+ +L+ RFY+ GEILLDG++++ L LR Q+ LV+Q LF TI NI Y + +
Sbjct: 385 IANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQ 444
Query: 486 -TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544
+ E+I AA+++ AM FI+ + +T +GE G+ LSGGQ+QRIAI+RA++++ IL+L
Sbjct: 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504
Query: 545 DEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604
DEATSALD ESE ++Q ALD + RT++V+AHRLSTI AD I VV+ +IV+ G+H E
Sbjct: 505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564
Query: 605 LISNPNSAYAALVQLQ 620
L++ N YA L ++Q
Sbjct: 565 LLAQ-NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = 3e-88
Identities = 120/250 (48%), Positives = 177/250 (70%), Gaps = 3/250 (1%)
Query: 994 FEVLDRKTQVIGDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
FEV D V G +L V+G +E V FSY + + V +D + + + G+++A+V
Sbjct: 310 FEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV--EDVSFEAKPGQTVAIV 367
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYE 1112
G +G+GKST+++L+ R +DP +G++++DG DI+ + SLR++IA+V Q+ LF SI +
Sbjct: 368 GPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIED 427
Query: 1113 NILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172
NI G+ A++ E+ AA+ A AH FI P+GY T VGERG QLSGG++QR+AIARA+L
Sbjct: 428 NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL 487
Query: 1173 KNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKI 1232
K+P IL+LDEATSALDVE+E V+ AL LM+ RTT I+AHRLST++NAD+I V ++G++
Sbjct: 488 KDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRV 547
Query: 1233 IEQGTHSSLV 1242
+E G+ LV
Sbjct: 548 VESGSFDELV 557
|
Length = 588 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 293 bits (751), Expect = 1e-86
Identities = 185/519 (35%), Positives = 291/519 (56%), Gaps = 70/519 (13%)
Query: 771 LRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATL--------LRTIVVDRSTILI 822
+ +R ++F ++ + +FD+ S+ L SR+ D+ L T+V + ++I+
Sbjct: 98 MTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASII- 154
Query: 823 QNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIS--EKLFFQGYGGNLSKAYLKANM 880
GL F++ F +W+++L+++ P I+S I K F N+SK NM
Sbjct: 155 ---GL----FIMMFYYSWQLSLILIVIAP-IVSIAIRVVSKRF-----RNISK-----NM 196
Query: 881 LAAEAVSNIRTVA-AFCSEDKVLELYSRELVEPSKR-----SFIRGQ------IAGIFYG 928
+ + T A K + ++ + VE +KR + +R Q + I
Sbjct: 197 --QNTMGQVTTSAEQMLKGHKEVLIFGGQEVE-TKRFDKVSNRMRQQGMKMVSASSISDP 253
Query: 929 ISQFFIFSSYGLALWYGSVLMGKELASFKSVMK-----SFMVLIVTALAMGETLALVPDL 983
I Q +S LA VL ASF SVM + V+ + +A+ L + ++
Sbjct: 254 IIQLI--ASLALAF----VLY---AASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNV 304
Query: 984 LKGNQ--MAA--SVFEVLDRKTQVIGDIGE-ELTNVEGTIELRGVHFSYPSRPEVVIFKD 1038
Q MAA ++F +LD + + D G+ + +G IE R V F+YP + EV ++
Sbjct: 305 NAQFQRGMAACQTLFAILDLEQEK--DEGKRVIERAKGDIEFRNVTFTYPGK-EVPALRN 361
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIAL 1098
N K+ AGK++ALVG+SGSGKST+ +L+ RFYD G++++DG D++ L SLR +AL
Sbjct: 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL 421
Query: 1099 VQQEPALFATSIYENILYG-KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQL 1157
V Q LF +I NI Y + S ++ EAA++A A FI+ + G T +GE GV L
Sbjct: 422 VSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481
Query: 1158 SGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLST 1217
SGGQ+QR+AIARA+L++ IL+LDEATSALD ESER +Q AL L + RT++++AHRLST
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541
Query: 1218 IKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
I+ AD+I V+E G+I+E+GTH+ L+ ++G Y +L +Q
Sbjct: 542 IEKADEILVVEDGEIVERGTHAELLA-QNGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 8e-84
Identities = 158/453 (34%), Positives = 242/453 (53%), Gaps = 72/453 (15%)
Query: 202 WQISLVTLSIVPLIALAGGMYAYV---TIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFA 258
W++SLV +V L + + V T A V + Y + IGNV VQ++
Sbjct: 156 WRLSLV---LVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYN 212
Query: 259 ---GEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHI 315
E +A++ + L L + VL SW W ++ V+
Sbjct: 213 RIEAETQALRDIADNL-----------------LAAQMPVL--SW----WALASVL---- 245
Query: 316 SNGGESFTTMLNVVIAGLSL---GQAA-PDITAFI-----------------------RA 348
N S TML +++ G +L GQ ++ AF+
Sbjct: 246 -NRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAP 304
Query: 349 KAAAYPIFEMIERDTMSKASSKTG-RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDI 407
K + FE+ D + G L ++ G +EF DVSF Y + + D +
Sbjct: 305 KLEEF--FEVE--DAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQ-GVED-VSFEA 358
Query: 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
G+ VA+VG +G+GKST+I+L++R ++P SG IL+DG +I+ + LR+ I +V Q+
Sbjct: 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418
Query: 468 ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527
LF +I +NI G+ DAT EE+ AA+ ++A FI P+ ++T VGERG QLSGG++Q
Sbjct: 419 GLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478
Query: 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADV 587
R+AI+RA++K+P IL+LDEATSALD E+E V+ ALD +M GRTT ++AHRLST+RNAD
Sbjct: 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADR 538
Query: 588 IAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
I V ++V++GS +EL++ +AAL++ Q
Sbjct: 539 ILVFDNGRVVESGSFDELVAR-GGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 3e-83
Identities = 115/221 (52%), Positives = 161/221 (72%)
Query: 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
+++G ++ + V F+YP+RP+ ++ +D + + G+ ALVG SGSGKSTV++L+ FY
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 1072 PTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAK 1131
P G+V++DG I + K L ++LV QEP LFA S+ +NI YG S V EAA+
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
A+AHSFIS L GY T+VGE+G QLSGGQKQRVAIARA+++NP++L+LDEATSALD ES
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 1192 ERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKI 1232
E+ VQQAL +RT +++AHRLST++ ADQI V++ G+I
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 269 bits (690), Expect = 1e-82
Identities = 122/240 (50%), Positives = 161/240 (67%), Gaps = 4/240 (1%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I V F Y P P ++ + +L+++ G+ + +VG+SGSGKST+ LI RFY P G+
Sbjct: 1 ITFEHVRFRYKPDGPVIL--DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAH 1136
V+VDG D+ + LR+ + +V QE LF SI +NI G S VIEAAKLA AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQ 1196
FIS LPEGY T VGE+G LSGGQ+QR+AIARA++ NP IL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1197 QALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
+ + + RT II+AHRLST+KNAD+I V+E G+I+EQG+H L+ E+G Y L LQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 257 bits (660), Expect = 2e-79
Identities = 97/214 (45%), Positives = 142/214 (66%), Gaps = 43/214 (20%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE + V FSYP RP+ V KD +L ++ G+ +A+VG SGSGKST+L L+LR YDPT+G++
Sbjct: 1 IEFKNVSFSYPGRPKPV-LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHS 1137
++DG+D++ L+L+SLRK+IA V Q+P LF+ +I ENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
LSGGQ+QR+AIARA+L++P IL+LDEATSALD E+E ++ +
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 1198 ALQRLMRKRTTIIVAHRLSTIKNADQISVIESGK 1231
AL+ L + +T I++AHRLSTI++AD+I V++ G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 7e-79
Identities = 146/404 (36%), Positives = 213/404 (52%), Gaps = 52/404 (12%)
Query: 878 ANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSS 937
A E+V+ I T+ A +E + + R+L SF + I + +
Sbjct: 316 ATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLT 375
Query: 938 YGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVL 997
+ + LW+G+ L +I AL+ G+ +A N +A V + +
Sbjct: 376 FAILLWFGAHL-----------------VIGGALSPGQLVAF-------NMLAGRVTQPV 411
Query: 998 DRKTQV-------------IGDIGEE-----------LTNVEGTIELRGVHFSY-PSRPE 1032
R Q+ +GDI L + G I + F Y P PE
Sbjct: 412 LRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPE 471
Query: 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL 1092
V+ + NL ++ G+ + +VG SGSGKST+ L+ R Y P G+V+VDG+D+ + L
Sbjct: 472 VL--SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529
Query: 1093 RKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGE 1152
R+ + +V QE LF+ SI +NI GA VI AAKLA AH FIS LP+GY+T+VGE
Sbjct: 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGE 589
Query: 1153 RGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVA 1212
+G LSGGQ+QR+AIARA++ NP IL+ DEATSALD ESE ++ + ++ + R RT II+A
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIA 649
Query: 1213 HRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
HRLST++ D+I V+E G+I E G H L+ G Y +L Q
Sbjct: 650 HRLSTVRACDRIIVLEKGQIAESGRHEELLA-LQGLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 1e-78
Identities = 120/240 (50%), Positives = 166/240 (69%), Gaps = 4/240 (1%)
Query: 382 IEFKDVSFCYPSRPDVA-IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I F+ V F Y +PD I D L I G++V +VG SGSGKST+ LI+RFY P +G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+L+DG+++ D WLR+Q+G+V QE LF +IR+NI +ME + AAKL+ A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FIS LPE ++T VGE+G LSGGQ+QRIAI+RA++ NP IL+ DEATSALD ESE+++
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
+ + GRT +++AHRLST++NAD I V++ +IV+ GSH+EL++ N YA L QLQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 257 bits (659), Expect = 2e-78
Identities = 111/221 (50%), Positives = 156/221 (70%)
Query: 376 DKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435
D L G ++F++V+F YP+RPD + + G++ ALVG SGSGKSTV++L+E FY+
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAK 495
P G++LLDG I + K+L ++ LV QEP LFA ++++NI YG + E + AA+
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ A SFIS L ++T+VGE+G QLSGGQKQR+AI+RA+++NP +L+LDEATSALDAES
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
E VQ+AL RT +V+AHRLST+ AD I V+ G +I
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 2e-78
Identities = 115/237 (48%), Positives = 164/237 (69%), Gaps = 3/237 (1%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G + V F+Y P I + + GK++A+VG+SG+GKST+L L+ RFYD +G
Sbjct: 261 GAVAFINVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318
Query: 1076 KVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANA 1135
+ +DG DI+ + +SLR+ I +V Q+ LF +I NI YG+ A+ EV AA+ A
Sbjct: 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQI 378
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVV 1195
H FI +LPEGY T VGERG++LSGG+KQRVAIAR +LKNP IL+LDEATSALD +E+ +
Sbjct: 379 HDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAI 438
Query: 1196 QQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKL 1252
Q AL+ + RTT+++AHRLSTI +AD+I V+++G+I+E+GTH L+ G Y ++
Sbjct: 439 QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAG-GLYAEM 494
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 248 bits (637), Expect = 3e-76
Identities = 97/214 (45%), Positives = 129/214 (60%), Gaps = 43/214 (20%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEFK+VSF YP RP + L I G+ VA+VG SGSGKST++ L+ R Y+P SGEI
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
L+DG +++ LDL+ LR+ I V Q+P LF+ TIRENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
LSGGQ+QRIAI+RA++++P IL+LDEATSALD E+E + E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRK 595
AL + G+T +V+AHRLSTIR+AD I V+ +
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 264 bits (676), Expect = 3e-75
Identities = 147/430 (34%), Positives = 232/430 (53%), Gaps = 33/430 (7%)
Query: 208 TLSIVPLIALAGGMYAYVTIGLIARVRK----SYVKAGE----IAEEVIGNVRTVQAFAG 259
TL+ V + +L YA +++ + +RK + ++ + E V G + T++A A
Sbjct: 279 TLTGVVIGSLV--CYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTG-IETIKATAT 335
Query: 260 EDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWY-VSVVVHKHISNG 318
E + + L+ + + ++ + L++++L+W+ +V+ +S G
Sbjct: 336 EPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPG 395
Query: 319 GESFTTMLNVVIAG--LSLGQAAPDITAFIRAKAAAYPIFEMIER-----DTMSKASSKT 371
ML + L L Q D F + A +ER ++ ++ S
Sbjct: 396 QLVAFNMLAGRVTQPVLRLAQLWQD---FQQTGIA-------LERLGDILNSPTEPRSAG 445
Query: 372 GRKLDKLSGHIEFKDVSFCYPSRPDVA-IFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430
L +L G I F+++ F Y PD + LDI G+ + +VG SGSGKST+ L+
Sbjct: 446 LAALPELRGAITFENIRFRY--APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL 503
Query: 431 ERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEI 490
+R Y P G++L+DG ++ D WLR+Q+G+V QE LF+ +IR+NI A E +
Sbjct: 504 QRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
AAKL+ A FIS LP+ + T+VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSA
Sbjct: 564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSA 623
Query: 551 LDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610
LD ESE + + + GRT +++AHRLST+R D I V++ +I ++G HEEL++
Sbjct: 624 LDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ- 682
Query: 611 SAYAALVQLQ 620
YA L Q Q
Sbjct: 683 GLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 4e-74
Identities = 95/221 (42%), Positives = 148/221 (66%), Gaps = 1/221 (0%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G IE R V FSYP++ + + +L +RAG+ +A++G+ GSGKST+L L+ Y PT+G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1076 KVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANA 1135
V++DG DI++L+ LR++I V Q+ LF ++ +NI G A + ++ AA+LA
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVV 1195
F++ P G ++GERG LSGGQ+Q VA+ARA+L +P ILLLDE TSA+D+ SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 1196 QQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQG 1236
++ L++L+ +T II+ HR S + D+I V++SG+I+ G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 7e-74
Identities = 159/585 (27%), Positives = 269/585 (45%), Gaps = 51/585 (8%)
Query: 697 YGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHA 756
+ V + A+++G + A ++ L Q + + +L + +
Sbjct: 1 WLVISALLAVLSGIAIIAQAALLADILTKLIEG-QLFQSLLPLLILLLIALVLRAFLAWL 59
Query: 757 IEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSS--SILASRLESDATLLRTIV 814
E L + ++ +R+ + + + + S ++ +E
Sbjct: 60 RERLGY-RAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYY---- 114
Query: 815 VDRSTILIQNF--GLVTASFVIA-FILNWRITLVVVATYPLIISGHISEKLFFQGYGGNL 871
+ L Q F +V +IA F NW L+++ T PLI + L G
Sbjct: 115 ---ARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIP---LFMILV-----GLA 163
Query: 872 SKAYLKANMLAAEAVSN--------IRTVAAFCSEDKVLELYSRELVEPSKR------SF 917
+K + A +S + T+ AF E + + S+ S
Sbjct: 164 AKDASEKQFSALARLSGHFLDRLRGLETLRAF----GRTEATEERIRKDSEDFRKATMSV 219
Query: 918 IRGQIAGIFYGISQFFIFSSYGL-ALWYGSVLMGKELASFKSVMKSFMVLIVTA---LAM 973
+R + +FF + S L A++ G L+G+ + + VLI+ +
Sbjct: 220 LRIAFLSSA--VLEFFAYLSIALVAVYIGFRLLGEGDLTLFAG---LFVLILAPEFFQPL 274
Query: 974 GETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEV 1033
+ + G A +F +L+ G + E IE+ + S+
Sbjct: 275 RDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK 334
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR 1093
D NL ++AG+ ALVG SG+GKST+L+L+L F PT G++ V+GID++ L+ ++ R
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394
Query: 1094 KHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153
K I+ V Q P LFA +I ENIL + AS+ E+I A A F+ P+G T +GE
Sbjct: 395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEG 453
Query: 1154 GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
G LSGGQ QR+A+ARA+L +LLLDE T+ LD E+E+++ QALQ L +++T +++ H
Sbjct: 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITH 513
Query: 1214 RLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQR 1258
RL +AD+I V+++G+++EQGTH L E + G Y L+ Q+
Sbjct: 514 RLEDAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 252 bits (644), Expect = 4e-72
Identities = 131/294 (44%), Positives = 191/294 (64%), Gaps = 18/294 (6%)
Query: 960 MKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIE 1019
M F+ I A A E + SVF+ + D E L NV+G +E
Sbjct: 292 MSGFITQIFEARAKLEDFF---------DLEDSVFQ-----REEPADAPE-LPNVKGAVE 336
Query: 1020 LRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV 1079
R + F + + + V D + + +AG+++A+VG +G+GK+T+++L+ R YDPT G++++
Sbjct: 337 FRHITFEFANSSQGV--FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394
Query: 1080 DGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFI 1139
DGIDI + +SLRK IA V Q+ LF SI ENI G++GA++ EV EAAK A AH FI
Sbjct: 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFI 454
Query: 1140 SALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL 1199
GY T VGERG +LSGG++QR+AIARA+LKN IL+LDEATSALDVE+E V+ A+
Sbjct: 455 LKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI 514
Query: 1200 QRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLI 1253
L + RTT I+AHRLST++NAD + ++ G++IE+G+ L+ +DG ++KL+
Sbjct: 515 DALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELI-QKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 4e-71
Identities = 167/503 (33%), Positives = 250/503 (49%), Gaps = 37/503 (7%)
Query: 132 QAAKMRMAY--LRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISR 189
Q A +AY + + + F E TG + AI ++ L + N + +
Sbjct: 11 QIAVRVLAYVTFFHLHSLSL-RFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVE 69
Query: 190 FLGGFIIGFARV--WQISLVTLSIVPLIALAGGMYAYVTI-------GLIARVRKSYVKA 240
+I RV W +L TL V L Y T+ + + A
Sbjct: 70 ISLVAVI-LWRVYGWWFALTTLVTVIL-------YLLFTVIVSDWRTDFRRLMNNADSDA 121
Query: 241 GEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSW 300
A + + N TV+ F E+ Y AL K K ++ + L +F +
Sbjct: 122 NAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV-LNFGQTAIFSTG 180
Query: 301 SLLVWYVSV--VVHKHISNGGESF--TTMLNVVIAGLSLGQAAPDI-TAFIRAKAAAYPI 355
++ +S V ++ G + + I LG + +I A +
Sbjct: 181 LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEK----- 235
Query: 356 FEMIERDTMSKASSKTGRKLDKLS-GHIEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIV 413
+ + + L + G + F +VSF Y P RP I + IP GK V
Sbjct: 236 MFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP---ILNGISFTIPLGKTV 292
Query: 414 ALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATT 473
A+VG SG+GKST++ L+ RFY+ SG I +DG +I+ + + LR+ IG+V Q+ LF T
Sbjct: 293 AIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDT 352
Query: 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533
I NI YG+ DAT EE+ AA+ ++ FI +LPE ++T VGERG++LSGG+KQR+AI+R
Sbjct: 353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412
Query: 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593
I+KNP IL+LDEATSALD +E ++Q AL V GRTT+V+AHRLSTI +AD I V+
Sbjct: 413 TILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDN 472
Query: 594 RKIVKTGSHEELISNPNSAYAAL 616
+IV+ G+HEEL++ YA +
Sbjct: 473 GRIVERGTHEELLAA-GGLYAEM 494
|
Length = 497 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 6e-70
Identities = 144/503 (28%), Positives = 253/503 (50%), Gaps = 34/503 (6%)
Query: 768 RLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGL 827
+L + + + IL + +F + + +ASR++ + + + +T + L
Sbjct: 224 KLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLNDQVAEFLSGQLATTALDAVML 281
Query: 828 VTASFVIAFILNWRITLVVVAT------YPLIISGHISEKLFFQGYGGNLSKAYLKANML 881
V ++ + + +TL+ +A ++S + L + K +
Sbjct: 282 VF-YALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDA------NRRLQQDAGKLTGV 334
Query: 882 AAEAVSNIRTVAAFCSED----KVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSS 937
A + +I T+ A E + ++ L+ + + QI G+ +
Sbjct: 335 AISGLQSIETLKASGLESDFFSRWAGYQAK-LLNAQQELGVLTQILGVL---PTLLTSLN 390
Query: 938 YGLALWYGSVL-MGKE-----LASFKSVMKSFMVLIVTALAMGETLA-LVPDLLKGNQMA 990
L L G + M + L +F+S+M SF+ + + G TL L DL + + +
Sbjct: 391 SALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVL 450
Query: 991 ASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMA 1050
+ + L + + E + G +ELR + F Y S E + ++F+L ++ G+ +A
Sbjct: 451 RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVA 509
Query: 1051 LVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSI 1110
LVG SGSGKST+ L+ Y P +G+++ DGI + + + L +A+V Q+ LF ++
Sbjct: 510 LVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569
Query: 1111 YENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170
+N+ + +++ A K A H I++ P GY ++ E G LSGGQ+QR+ IARA
Sbjct: 570 RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARA 629
Query: 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESG 1230
+++NP IL+LDEATSALD E+E+++ L+R R T IIVAHRLSTI++ D+I V+E G
Sbjct: 630 LVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERG 687
Query: 1231 KIIEQGTHSSLVENEDGAYFKLI 1253
K++++GTH L GAY +LI
Sbjct: 688 KVVQRGTHEELWA-VGGAYARLI 709
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 3e-69
Identities = 98/238 (41%), Positives = 143/238 (60%), Gaps = 2/238 (0%)
Query: 990 AASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSM 1049
A ++F VLD + + ++E GV +YP R + + + V G+ +
Sbjct: 294 AEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPAL--RPVSFTVPPGERV 351
Query: 1050 ALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATS 1109
ALVG SG+GKST+L+L+L F DPT G + V+G+ + + S R IA V Q P LFA +
Sbjct: 352 ALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGT 411
Query: 1110 IYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169
I ENI + AS+ E+ EA + A F++ALP+G T +GE G LSGGQ QR+A+AR
Sbjct: 412 IAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALAR 471
Query: 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVI 1227
A L++ +LLLDE T+ LD E+E V +AL+ L + RT ++V HRL+ AD+I V+
Sbjct: 472 AFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 4e-69
Identities = 93/225 (41%), Positives = 148/225 (65%), Gaps = 1/225 (0%)
Query: 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
++G IE R V F+YP + + + +L +R G+ +A++G+ GSGKST+L L+L Y
Sbjct: 458 PRLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516
Query: 1072 PTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAK 1131
PT G V++DG+DI++++ LR++I V Q+P LF ++ +NI G A + E++ AA+
Sbjct: 517 PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAE 576
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
LA F+ P+G ++GERG LSGGQ+Q VA+ARA+L++P ILLLDE TSA+D S
Sbjct: 577 LAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636
Query: 1192 ERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQG 1236
E + L+R + +T ++V HR S + D+I V+++G+I+ G
Sbjct: 637 EERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 2e-67
Identities = 97/221 (43%), Positives = 142/221 (64%), Gaps = 1/221 (0%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G IEF++VSF YP++ A+ D L I AG+ VA++G GSGKST++ L+ Y+P SG
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
+LLDG +I+ LD LR+ IG V Q+ LF T+R+NI G A E I RAA+L+
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
F++ P + Q+GERG LSGGQ+Q +A++RA++ +P ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600
+E L +++ +T +++ HR S + D I V+ +IV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 2e-66
Identities = 139/427 (32%), Positives = 228/427 (53%), Gaps = 32/427 (7%)
Query: 194 FIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIAR-VRKSYVKAGE---IAEEVIG 249
IIG + V L +PLI L G + ++R +S ++ + + E +
Sbjct: 281 AIIG----GPLVWVPLVAIPLILLPG----LLLQRPLSRLAEESMRESAQRNAVLVESLS 332
Query: 250 NVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL----SWSLLVW 305
+ T++A E + + +++ ++ + G K+ + L + + F+ S +++V
Sbjct: 333 GLETIKALNAEGRFQRRWEQTVAALARSGLKS---RFLSNLATNFAQFIQQLVSVAIVVV 389
Query: 306 YVSVVVHKHISNGGESFTTMLNV-VIAGLSLGQAAPDITAFIRAKAAAYPIFEMI----E 360
V ++ ++ GG ML+ +A LGQ A +T + +AK A + E++ E
Sbjct: 390 GVYLISDGELTMGGLIACVMLSGRALA--PLGQLAGLLTRYQQAKTALQSLDELMQLPVE 447
Query: 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSG 420
R +L G IEF++VSF YP + A+ D L I G+ VA++G G
Sbjct: 448 RP-----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIG 501
Query: 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480
SGKST++ L+ Y+P G +LLDG +I+ +D LR+ IG V Q+P LF T+R+NI
Sbjct: 502 SGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIAL 561
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
G A EEI RAA+L+ F+ P+ + Q+GERG LSGGQ+Q +A++RA++++P
Sbjct: 562 GAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621
Query: 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600
ILLLDE TSA+D SE ++ L R + G+T V+V HR S + D I V+ +IV G
Sbjct: 622 ILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681
Query: 601 SHEELIS 607
++++
Sbjct: 682 PKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 5e-65
Identities = 162/463 (34%), Positives = 251/463 (54%), Gaps = 54/463 (11%)
Query: 183 FM-HYISRFLGGFII---GFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYV 238
FM +++ F+ F++ FA W++S+V L+ L Y+ LIA++
Sbjct: 133 FMRQHLATFVALFLLIPTAFAMDWRLSIV------LMVLG---ILYI---LIAKLVMQRT 180
Query: 239 KAGEIAEE------------VIGNVRTVQAF---AGEDKAVKVYKEAL-SNTYKYGRKAG 282
K G+ A E I NV V ++ E A+K + L S Y
Sbjct: 181 KNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA 240
Query: 283 LAKGL----GLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE--SFTTMLNVVIAGLSLG 336
LA GL SM C+L + +V+V K + GE +F N++I L
Sbjct: 241 LASGLNRMASTISMMCILVIG--------TVLVIKGELSVGEVIAFIGFANLLIG--RLD 290
Query: 337 QAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPD 396
Q + IT A+A F++ E + +L + G +EF+ ++F + +
Sbjct: 291 QMSGFITQIFEARAKLEDFFDL-EDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQ 349
Query: 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456
+FD + AG+ VA+VG +G+GK+T+I+L++R Y+P G+IL+DG +I + + L
Sbjct: 350 -GVFD-VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407
Query: 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
R+ I V Q+ LF +IRENI G++ AT EE+ AAK + A FI ++T VGE
Sbjct: 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGE 467
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVA 576
RG +LSGG++QR+AI+RAI+KN IL+LDEATSALD E+E V+ A+D + RTT ++A
Sbjct: 468 RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIA 527
Query: 577 HRLSTIRNAD-VIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618
HRLST+RNAD V+ + QGR +++ GS +ELI + + L++
Sbjct: 528 HRLSTVRNADLVLFLDQGR-LIEKGSFQELI-QKDGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 5e-65
Identities = 138/436 (31%), Positives = 230/436 (52%), Gaps = 35/436 (8%)
Query: 838 LNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSK-------AYLKANMLAAEAVSNIR 890
++W++TL+ + P++ + + YG L + A+ N E++++IR
Sbjct: 135 ISWQLTLLALLPMPVM-------AIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIR 187
Query: 891 TVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIF-------YGISQFFIFSSYGLALW 943
+ AF ED+ L++ + + K++ +I F G++ +
Sbjct: 188 MIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV 247
Query: 944 YGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003
GS+ +G +L SF VM ++I LA LA + ++++ A S + + V
Sbjct: 248 NGSLTLG-QLTSF--VM-YLGLMIWPMLA----LAWMFNIVERGSAAYSRIRAMLAEAPV 299
Query: 1004 IGDIGEELTNVEGTIELRGVHFSYP--SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061
+ D E + G +++ F+YP P ++ N ++ G+ + + G +GSGKST
Sbjct: 300 VKDGSEPVPEGRGELDVNIRQFTYPQTDHP---ALENVNFTLKPGQMLGICGPTGSGKST 356
Query: 1062 VLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGA 1121
+LSLI R +D + G + I + +L L S R +A+V Q P LF+ ++ NI G+ A
Sbjct: 357 LLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDA 416
Query: 1122 SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
++ E+ A+LA+ H I LP+GY T+VGERGV LSGGQKQR++IARA+L N EIL+LD
Sbjct: 417 TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476
Query: 1182 EATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSL 1241
+A SA+D +E + L++ RT II AHRLS + A +I V++ G I ++G H L
Sbjct: 477 DALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQL 536
Query: 1242 VENEDGAYFKLINLQQ 1257
+ + G Y + QQ
Sbjct: 537 AQ-QSGWYRDMYRYQQ 551
|
Length = 569 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 2e-64
Identities = 109/335 (32%), Positives = 187/335 (55%), Gaps = 8/335 (2%)
Query: 926 FYGISQFFIFSSYGLALWYGSVLMGKEL---ASFKSVMKSFMVLIVTALAMGETLA--LV 980
F G+S + GL + + M ++ A + +++I AL E LA
Sbjct: 241 FTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAF 300
Query: 981 PDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFN 1040
L + A + ++LD+K +V E+ +ELR V F+YP + K+FN
Sbjct: 301 QHLGQVIASARRLNDILDQKPEVTFP-DEQTATTGQALELRNVSFTYPGQQTKA-LKNFN 358
Query: 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQ 1100
L + G+ +A++G+SGSGKST+L L+ +DP G + ++G++I L+ ++LR+ I+++
Sbjct: 359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLT 418
Query: 1101 QEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160
Q LF+ ++ +N+ AS+ E+ A + + + P+G +T +GE G +LSGG
Sbjct: 419 QRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478
Query: 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN 1220
+++R+A+ARA+L + + LLDE T LD +ER V L +T ++V HRL ++
Sbjct: 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538
Query: 1221 ADQISVIESGKIIEQGTHSSLVENEDGAYFKLINL 1255
D+I V+++GKIIE+GTH+ L+ N G Y +L L
Sbjct: 539 MDRIIVLDNGKIIEEGTHAELLANN-GRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 6e-64
Identities = 114/303 (37%), Positives = 179/303 (59%), Gaps = 18/303 (5%)
Query: 321 SFTTMLNVVIAGLSLGQAAPDITA-FIRAK-AAAYPIFEMIERDTMSKASSKTGRKLDKL 378
SF +N ++ G ++ R P+ ++E + A S+ +L
Sbjct: 421 SFLEPVNNLVG---FGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRL--- 474
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
SG++E ++++F Y S + + + F L + G+ VALVGGSGSGKST+ L+ Y+P S
Sbjct: 475 SGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI-LYGKDDATM--EEITRAAK 495
GEIL DG + + + L + +V+Q+ LF T+R+N+ L+ D T+ ++ RA K
Sbjct: 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLW---DPTIPDADLVRACK 590
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ I++ P ++ ++ E G LSGGQ+QR+ I+RA+V+NPSIL+LDEATSALD E+
Sbjct: 591 DAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
E + + L R G T ++VAHRLSTIR+ D I V++ K+V+ G+HEEL AYA
Sbjct: 651 EKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL-WAVGGAYAR 707
Query: 616 LVQ 618
L++
Sbjct: 708 LIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 8e-64
Identities = 75/223 (33%), Positives = 142/223 (63%), Gaps = 4/223 (1%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G IE + V Y V+ K+ + ++ G+ + +VG++GSGKS++L + R + ++G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVL-KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 1076 KVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENI-LYGKDGASEGEVIEAAKLAN 1134
+++DG+DI ++ L LR I+++ Q+P LF+ +I N+ +G+ S+ E+ +A +
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERVG 117
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
F+ +LP G T V E G LS GQ+Q + +ARA+L+ +IL+LDEAT+++D E++ +
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 1195 VQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGT 1237
+Q+ ++ + T + +AHRL TI ++D+I V++ G+++E +
Sbjct: 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 1e-62
Identities = 95/244 (38%), Positives = 134/244 (54%), Gaps = 4/244 (1%)
Query: 348 AKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDI 407
AAA +F +++ A S +EF VS YP R +
Sbjct: 290 GVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAYPGRRPAL--RPVSFTV 345
Query: 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
P G+ VALVG SG+GKST+++L+ F +P G I ++G + D R QI V Q P
Sbjct: 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP 405
Query: 468 ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527
LFA TI ENI + DA+ EI A + + F++ LP+ +T +GE G LSGGQ Q
Sbjct: 406 FLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQ 465
Query: 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADV 587
R+A++RA +++ +LLLDE T+ LDAE+E V EAL + GRT ++V HRL+ AD
Sbjct: 466 RLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADR 525
Query: 588 IAVV 591
I V+
Sbjct: 526 IVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 1e-62
Identities = 85/221 (38%), Positives = 143/221 (64%), Gaps = 4/221 (1%)
Query: 1040 NLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALV 1099
N + AG+ +ALVG SG+GK+++L+ +L F P G + ++GI+++ L+ +S RKH++ V
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 1100 QQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSG 1159
Q P L ++ +N+L G AS+ ++ +A + A F+ LP+G T +G++ LS
Sbjct: 429 GQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488
Query: 1160 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIK 1219
GQ QR+A+ARA+L+ ++LLLDE T++LD SE++V QAL R++TT++V H+L +
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA 548
Query: 1220 NADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQD 1260
DQI V++ G+I++QG ++ L G + L L RQ+
Sbjct: 549 QWDQIWVMQDGQIVQQGDYAELS-QAGGLFATL--LAHRQE 586
|
Length = 588 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 3e-62
Identities = 101/241 (41%), Positives = 150/241 (62%), Gaps = 4/241 (1%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I +++SF YP A+ D L I AG++ ALVG SG+GKST+++L+ F P GEI
Sbjct: 321 ISLENLSFRYPDG-KPALSD-LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
++G +++ L + R+QI V+Q P LFA TIRENIL + DA+ EEI A + +
Sbjct: 379 RVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLE 438
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
F+ P+ +T +GE G LSGGQ QR+A++RA++ S+LLLDE T+ LDAE+E + +
Sbjct: 439 FV-PKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQ 497
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621
AL + +T +V+ HRL +AD I V+ ++V+ G+HEEL YA L++ QE
Sbjct: 498 ALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQE 556
Query: 622 A 622
Sbjct: 557 G 557
|
Length = 559 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 6e-62
Identities = 101/302 (33%), Positives = 176/302 (58%), Gaps = 20/302 (6%)
Query: 963 FMVLIV-TALAMGETLALVPDLLK--GNQMAAS--VFEVLDRKTQVIGDIGEELTNVEGT 1017
+ L V ALA E L V + G +A++ + E+ ++K +V + +
Sbjct: 279 LIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVS 338
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ L V F+YP +P+ V+ K +L+++AG+ +AL+G++G GKST+L L+ R +DP G++
Sbjct: 339 LTLNNVSFTYPDQPQPVL-KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEA------AK 1131
+++G I + +LR+ I++V Q LF+ ++ +N+L AS+ +IE K
Sbjct: 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEK 457
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
L +G + +GE G QLSGG+++R+ IARA+L + +LLLDE T LD E+
Sbjct: 458 LLED-------DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510
Query: 1192 ERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFK 1251
ER + + L + +T +++ HRL+ ++ D+I V+++G+IIEQGTH L+ G Y++
Sbjct: 511 ERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQ 569
Query: 1252 LI 1253
L
Sbjct: 570 LK 571
|
Length = 574 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 221 bits (564), Expect = 3e-61
Identities = 105/268 (39%), Positives = 169/268 (63%), Gaps = 12/268 (4%)
Query: 993 VFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
VFE++D Q G+ L + G I++ V F+Y R + ++ ++ NL V + +ALV
Sbjct: 318 VFELMDGPRQQYGNDDRPLQS--GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALV 373
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYE 1112
G +GSGKST+ SL++ +Y T G++ +DG + L+ LR+ +A+VQQ+P + A +
Sbjct: 374 GHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLA 433
Query: 1113 NILYGKDGASEG--EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170
N+ G+D + E + +E +LA +LP+G T +GE+G LS GQKQ +A+AR
Sbjct: 434 NVTLGRDISEEQVWQALETVQLA---ELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490
Query: 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIV-AHRLSTIKNADQISVIES 1229
+++ P+IL+LDEAT+ +D +E+ +QQAL +R+ TT++V AHRLSTI AD I V+
Sbjct: 491 LVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTIVEADTILVLHR 549
Query: 1230 GKIIEQGTHSSLVENEDGAYFKLINLQQ 1257
G+ +EQGTH L+ + G Y+++ LQ
Sbjct: 550 GQAVEQGTHQQLLAAQ-GRYWQMYQLQL 576
|
Length = 592 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 6e-59
Identities = 120/503 (23%), Positives = 216/503 (42%), Gaps = 38/503 (7%)
Query: 134 AKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGG 193
+ +R+ + +L +G++++ + +D+ + + ++ I+ +
Sbjct: 91 SALRVRLFEKLEPLSPALLL-RYRSGDLLNRLVADVDALDNL-------YLRVIAPAVVA 142
Query: 194 FIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVI---GN 250
++ I L SI + L + + LI Y + +
Sbjct: 143 LVLIAVVT--IGLSFFSIPLALLLGLILLL---LLLIIPTL-FYRAGRKFGAHLAQGRAA 196
Query: 251 VRT-----VQAFA------GEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCV-LFL 298
+R+ VQ A ED + ++ K RK GL + + L
Sbjct: 197 LRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLL 256
Query: 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDIT--AFIRAKAAAYPIF 356
LL+W + V G + ++ + +A + AF
Sbjct: 257 VIGLLLWMAAQVGA-----GALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASAR 311
Query: 357 EMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
+ + + + +E ++VSF YP + A F L + G+ VA++
Sbjct: 312 RLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKA-LKNFNLTLAQGEKVAIL 370
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G SGSGKST++ L+ ++P G I L+G I LD + LR+ I ++ Q LF+ T+R+
Sbjct: 371 GRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRD 430
Query: 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536
N+ DA+ EE+ A + + + P+ T +GE G +LSGG+++R+A++RA++
Sbjct: 431 NLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL 490
Query: 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
+ + LLDE T LD +E V L G+T ++V HRL + D I V+ KI
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKI 550
Query: 597 VKTGSHEELISNPNSAYAALVQL 619
++ G+H EL++N N Y L QL
Sbjct: 551 IEEGTHAELLAN-NGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 7e-59
Identities = 142/437 (32%), Positives = 220/437 (50%), Gaps = 36/437 (8%)
Query: 198 FARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAF 257
F W+++LV +++ + + + + + R+ +G+I+ TVQ
Sbjct: 271 FYYSWKLALVAVALALVAIAVTLVLGLLQVR---KERRLLELSGKISGL------TVQLI 321
Query: 258 AG---------EDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWY-- 306
G E++A + + S K A + L + VL + S ++
Sbjct: 322 NGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN-LLTVFNAVLPVLTSAALFAAA 380
Query: 307 VSVVVHKHISNGG-ESFTTMLNVVIAG-LSLGQAAPDITAFIRAKAAAYPIFEMIERDTM 364
+S++ +S G +F T L I A I A PI E +
Sbjct: 381 ISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE 440
Query: 365 SKASSKTGRKLDKLSGHIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGK 423
+K KLSG IE V+F Y RPD I D L I G+ VA+VG SGSGK
Sbjct: 441 AKTDP------GKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGK 492
Query: 424 STVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD 483
ST++ L+ F P SG + DG ++ GLD++ +R+Q+G+V Q L + +I ENI G
Sbjct: 493 STLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-GGA 551
Query: 484 DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543
T++E AA+++ I +P T + E G LSGGQ+QR+ I+RA+V+ P ILL
Sbjct: 552 PLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILL 611
Query: 544 LDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHE 603
DEATSALD ++ V E+L+R+ V R +V+AHRLSTIRNAD I V+ ++V+ G+++
Sbjct: 612 FDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYD 669
Query: 604 ELISNPNSAYAALVQLQ 620
EL++ +A L + Q
Sbjct: 670 ELMARE-GLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 8e-58
Identities = 130/385 (33%), Positives = 210/385 (54%), Gaps = 34/385 (8%)
Query: 886 VSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFY-----GISQFFIFSSYGL 940
+S +R A E++ +++ ++ + Q + + +
Sbjct: 324 ISKLRVAGA---ENRAFARWAKLFSR-QRKLELSAQRIENLLTVFNAVLPVLTSAALFAA 379
Query: 941 ALW-YGSVLMGKELASFKSVMKSFMVLI--VTALAMG--ETLALVPDLLKGNQMAASVFE 995
A+ G + L SF + +F VT L+ LA++P + + ++ E
Sbjct: 380 AISLLGGAGLS--LGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE 437
Query: 996 VLDRKTQVIGDIGEELTNVEGTIELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQ 1054
V + KT D G+ + G IE+ V F Y P P +I D +L++ G+ +A+VG
Sbjct: 438 VDEAKT----DPGK----LSGAIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGP 487
Query: 1055 SGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENI 1114
SGSGKST+L L+L F P +G V DG D+ L+++++R+ + +V Q L + SI+ENI
Sbjct: 488 SGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENI 547
Query: 1115 LYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174
G + E EAA++A I A+P G T + E G LSGGQ+QR+ IARA+++
Sbjct: 548 A-GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606
Query: 1175 PEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIE 1234
P ILL DEATSALD ++ +V ++L+RL K T I++AHRLSTI+NAD+I V+++G++++
Sbjct: 607 PRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQ 664
Query: 1235 QGTHSSLVENEDGAYFKLINLQQRQ 1259
QGT+ L+ E G + L +RQ
Sbjct: 665 QGTYDELMARE-GLFA---QLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 1e-55
Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 6/224 (2%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G IEFK+VS Y + I G+ V +VG +GSGKS+++ + R E SG
Sbjct: 1 GDIEFKNVSLRYRPNLPPVL-KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI--LYGKDDATMEEITRAAKLS 497
IL+DG +I + L LR +I ++ Q+P LF+ TIR N+ D EE+ +A +
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSD---EELWQALERV 116
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
F+ +LP +T V E G LS GQ+Q + ++RA+++ IL+LDEAT+++D E++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 558 SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601
+Q+ + T + +AHRL TI ++D I V+ ++V+ S
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (517), Expect = 3e-55
Identities = 154/514 (29%), Positives = 258/514 (50%), Gaps = 39/514 (7%)
Query: 135 KMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGF 194
++R + + L Q +S FDT+ G++IS +T+D V++D V + + +G
Sbjct: 99 QLRTDVMDAALRQPLSAFDTQP-VGQLISRVTNDTEVIRDLYVTVVATVLRSAA-LIGAM 156
Query: 195 IIG-FARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAE---EVIGN 250
++ F+ W+++LV + I P + + +Y + ++ RVR +Y+ +I + EVI
Sbjct: 157 LVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVR-AYL--ADINDGFNEVING 213
Query: 251 VRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGL---GLGSMHCVLFLSWSLLVWYV 307
+ +Q F + + + EA + Y + G L S+ L L L+++
Sbjct: 214 MSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF 273
Query: 308 SV-------VVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360
S V++ IS G LN + L+ Q+ +A A +FE+
Sbjct: 274 SASGTIEVGVLYAFISYLGR-----LNEPLIELTTQQS-----MLQQAVVAGERVFEL-- 321
Query: 361 RDTMSKASSKTGRKLDKLSG-HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGS 419
M + G L I+ +VSF Y R D + L +P+ VALVG +
Sbjct: 322 ---MDGPRQQYGNDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHT 376
Query: 420 GSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENIL 479
GSGKST+ SL+ +Y GEI LDG + L LRQ + +V Q+P + A T N+
Sbjct: 377 GSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVT 436
Query: 480 YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539
G+ D + E++ +A + + +LP+ T +GE+G LS GQKQ +A++R +V+ P
Sbjct: 437 LGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495
Query: 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599
IL+LDEAT+ +D+ +E ++Q+AL V T VV+AHRLSTI AD I V+ + V+
Sbjct: 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555
Query: 600 GSHEELISNPNSAYAALVQLQEAASQQSNSSQCP 633
G+H++L++ Y + QLQ A + + S +
Sbjct: 556 GTHQQLLAA-QGRYWQMYQLQLAGEELAASVREE 588
|
Length = 592 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 6e-55
Identities = 147/533 (27%), Positives = 263/533 (49%), Gaps = 41/533 (7%)
Query: 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFD-----EMDN 794
I+I A +I I+ I+ ++G+RL++ + + + +F E+ +
Sbjct: 198 ISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVS 257
Query: 795 SSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAF--ILNWRITLVVVATYPL 852
+ +S +++ A+ + ++ +D LV + +L + ++L+ + Y +
Sbjct: 258 RFTDASSIIDALASTILSLFLDMWI-------LVIVGLFLVRQNMLLFLLSLLSIPVYAV 310
Query: 853 IISGHISEKLFFQGYGGNLSKAYLKANMLAA---EAVSNIRTVAAFCSEDKVLELYSREL 909
II LF + + A +L + E ++ I T+ + SE + E
Sbjct: 311 III------LFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEF 364
Query: 910 VEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGS--VLMGK----ELASFKSVMKSF 963
+ +SF + I + LW G+ V+ GK +L +F +++ F
Sbjct: 365 GDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYF 424
Query: 964 MVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI-GDIGEELTNVEGTIELRG 1022
+ + + L P L + EV ++ I EL N+ G I +
Sbjct: 425 LT------PLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVIND 478
Query: 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI 1082
V +SY ++ D +L ++ +VG SGSGKST+ L++ F+ +G+++++G
Sbjct: 479 VSYSYGYGSNIL--SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536
Query: 1083 DIKRLNLKSLRKHIALVQQEPALFATSIYENILYG-KDGASEGEVIEAAKLANAHSFISA 1141
+K ++ +LR+ I + QEP +F+ SI EN+L G K+ S+ E+ A ++A I
Sbjct: 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIEN 596
Query: 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
+P GY T++ E G +SGGQKQR+A+ARA+L + ++L+LDE+TS LD +E+ + L
Sbjct: 597 MPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656
Query: 1202 LMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLIN 1254
L K T I VAHRLS K +D+I V++ GKIIEQG+H L+ + +G Y LI+
Sbjct: 657 LQDK-TIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL-DRNGFYASLIH 707
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 3e-54
Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 15/246 (6%)
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
+ +VSF YP +P + L I AG+ VAL+G +G GKST++ L+ R ++P
Sbjct: 336 QVSLTLNNVSFTYPDQPQPVL-KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ 394
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRA----- 493
GEILL+G I LRQ I +V+Q LF+ T+R+N+L +A+ E +
Sbjct: 395 GEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVG 454
Query: 494 -AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
KL E + +GE G QLSGG+++R+ I+RA++ + +LLLDE T LD
Sbjct: 455 LEKLLED-------DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLD 507
Query: 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
AE+E + E L +T +++ HRL+ + D I V+ +I++ G+H+EL++
Sbjct: 508 AETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG-R 566
Query: 613 YAALVQ 618
Y L Q
Sbjct: 567 YYQLKQ 572
|
Length = 574 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 1e-52
Identities = 76/216 (35%), Positives = 129/216 (59%), Gaps = 1/216 (0%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
+PAG+ +ALVG SG+GK+++++ + F P G + ++G ++ LD + R+ + V Q
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQN 431
Query: 467 PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526
P L T+R+N+L G DA+ E++ +A + + F+ LP+ +T +G++ LS GQ
Sbjct: 432 PQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491
Query: 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNAD 586
QR+A++RA+++ +LLLDE T++LDA SE V +AL+ +TT++V H+L + D
Sbjct: 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWD 551
Query: 587 VIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622
I V+Q +IV+ G + EL L QE
Sbjct: 552 QIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587
|
Length = 588 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-51
Identities = 123/463 (26%), Positives = 213/463 (46%), Gaps = 29/463 (6%)
Query: 131 RQAAKMRMAYLRSMLNQDISLFDTE-ASTGEVISAITSDIIVVQD----ALSEKVGNFMH 185
R +R+ + Q +L G+++ + +D+ +QD + +
Sbjct: 83 RSLGALRVRVYERLARQ--ALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALVV 140
Query: 186 YISR--FLGGFIIGFARVWQISL-VTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGE 242
+ + + A + L + + PL++L A + AR+R
Sbjct: 141 GAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQAL---ARLRGELAAQ-- 195
Query: 243 IAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSL 302
+ + + A A+ +EA + R+A A LG L+
Sbjct: 196 -LTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLG 254
Query: 303 LVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFI----RAKAAAYPIFEM 358
+W V ++G + T+ +V+ L+ +A + A R +AAA I E+
Sbjct: 255 ALWAGGPAV----ADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEV 310
Query: 359 IERDTMSKASSKTGRKLDKLSGH--IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
++ S G +E +D+S YP P V D LD+P G+ VA++
Sbjct: 311 LDAAGPVAEGSAP-AAGAVGLGKPTLELRDLSAGYPGAPPV--LDGVSLDLPPGERVAIL 367
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G SGSGKST+++ + +PL GE+ LDG + LD +R+++ + Q+ LF TT+RE
Sbjct: 368 GPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRE 427
Query: 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536
N+ + DAT EE+ A + ++ LP+ +T +GE G +LSGG++QR+A++RA++
Sbjct: 428 NLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALL 487
Query: 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
+ ILLLDE T LDAE+ + + E L + GRT V++ H L
Sbjct: 488 ADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 4e-51
Identities = 98/297 (32%), Positives = 155/297 (52%), Gaps = 27/297 (9%)
Query: 945 GSVLMGKELASFK---SVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT 1001
GS+L+G+ LA K F + E LA P S +
Sbjct: 263 GSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYP----------SRDPAM---- 308
Query: 1002 QVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061
L EG + + V P + + + ++AG+++A++G SGSGKST
Sbjct: 309 --------PLPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKST 359
Query: 1062 VLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGA 1121
+ LI+ + PT+G V +DG D+K+ + ++ KHI + Q+ LF ++ ENI + A
Sbjct: 360 LARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENA 419
Query: 1122 SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
++IEAAKLA H I LP+GY T +G G LSGGQ+QR+A+ARA+ +P++++LD
Sbjct: 420 DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479
Query: 1182 EATSALDVESERVVQQALQRL-MRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGT 1237
E S LD E E+ + A++ L R T +++ HR S + D+I V++ G+I G
Sbjct: 480 EPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 1e-50
Identities = 95/292 (32%), Positives = 161/292 (55%), Gaps = 27/292 (9%)
Query: 945 GSVLMGKELASFKSVM---KSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT 1001
GS+L G+ LA + K F+ + + E LA +P + E +
Sbjct: 281 GSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELP----------AAAERM---- 326
Query: 1002 QVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061
L +G + + + + P + + ++ K + ++AG+++ ++G SGSGKST
Sbjct: 327 --------PLPAPQGALSVERLTAAPPGQKKPIL-KGISFALQAGEALGIIGPSGSGKST 377
Query: 1062 VLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGA 1121
+ L++ + PT+G V +DG D+++ + + L +HI + Q+ LF +I ENI + A
Sbjct: 378 LARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA 437
Query: 1122 SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
+VIEAA+LA H I LP+GY T++GE G LSGGQ+QR+A+ARA+ +P +++LD
Sbjct: 438 DPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLD 497
Query: 1182 EATSALDVESERVVQQALQRL-MRKRTTIIVAHRLSTIKNADQISVIESGKI 1232
E S LD E E + A+ R T +++AHR S + + D+I V++ G+I
Sbjct: 498 EPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 2e-50
Identities = 85/222 (38%), Positives = 133/222 (59%), Gaps = 1/222 (0%)
Query: 388 SFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN 447
F YP D + + G+++ + G +GSGKST++SLI+R ++ G+I
Sbjct: 320 QFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378
Query: 448 IKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLP 507
+ L L R ++ +V+Q P LF+ T+ NI G+ DAT +EI A+L+ I LP
Sbjct: 379 LTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLP 438
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
+ ++T+VGERG+ LSGGQKQRI+I+RA++ N IL+LD+A SA+D +E+ + L +
Sbjct: 439 QGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498
Query: 568 VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
GRT ++ AHRLS + A I V+Q I + G+H++L
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS 540
|
Length = 569 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 2e-50
Identities = 92/284 (32%), Positives = 149/284 (52%), Gaps = 9/284 (3%)
Query: 939 GLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPD----LLKGNQMAASVF 994
GLA+ G +A + + VL++ LA E A +P L + A +
Sbjct: 249 GLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIV 308
Query: 995 EVLDRKTQV-IGDIGEELTNVEG--TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMAL 1051
EVLD V G G T+ELR + YP P V +L + G+ +A+
Sbjct: 309 EVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPV--LDGVSLDLPPGERVAI 366
Query: 1052 VGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIY 1111
+G SGSGKST+L+ + DP G+V +DG+ + L+ +R+ +++ Q+ LF T++
Sbjct: 367 LGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVR 426
Query: 1112 ENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV 1171
EN+ + A++ E+ A + ++ ALP+G T +GE G +LSGG++QR+A+ARA+
Sbjct: 427 ENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARAL 486
Query: 1172 LKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRL 1215
L + ILLLDE T LD E+ + + L + RT +++ H L
Sbjct: 487 LADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 7e-50
Identities = 77/216 (35%), Positives = 113/216 (52%), Gaps = 44/216 (20%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+ V F YP V+ ++ + + G+S+A++G SGSGKST+ LIL PT+G+V
Sbjct: 1 LEVENVSFRYPGAEPPVL-RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHS 1137
+DG DI + + L H+ + Q+ LF+ SI ENIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
SGGQ+QR+ +ARA+ NP IL+LDE S LDVE ER + Q
Sbjct: 98 --------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 1198 ALQRL-MRKRTTIIVAHRLSTIKNADQISVIESGKI 1232
A+ L T I++AHR T+ +AD+I V+E G++
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 1e-47
Identities = 81/234 (34%), Positives = 127/234 (54%), Gaps = 27/234 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----P 1072
IELR ++ Y + KD +L + G+ AL+G SG GKST+L L+ R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1073 TAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG-------KDGASE 1123
G+V++DG DI +++ LR+ + +V Q+P F SIY+N+ YG +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1124 GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183
V EA + A AL + ++ G LSGGQ+QR+ +ARA+ PE+LLLDE
Sbjct: 118 ERVEEALRKA-------ALWDEVKDRLHALG--LSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 1184 TSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236
TSALD S +++ + L ++ T +IV H + AD+ + + +G+++E G
Sbjct: 169 TSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-47
Identities = 69/219 (31%), Positives = 119/219 (54%), Gaps = 41/219 (18%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ + V FSYP + + V K+ +L+++ G+ +AL+G+SGSGKST+L L+ P G++
Sbjct: 1 LSINNVSFSYPEQEQQV-LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHS 1137
+DG+ + L K+L I+++ Q P LF T++ N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
G + SGG++QR+A+AR +L++ I+LLDE T LD +ER +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 1198 ALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQG 1236
+ +++ +T I + H L+ I++ D+I +E+GKII QG
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 2e-47
Identities = 98/250 (39%), Positives = 153/250 (61%), Gaps = 5/250 (2%)
Query: 369 SKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS 428
K +L+ L+G I DVS+ Y + I L I +VG SGSGKST+
Sbjct: 461 KKKRTELNNLNGDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAK 518
Query: 429 LIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATM 487
L+ F++ SGEILL+G ++K +D LRQ I + QEP +F+ +I EN+L G K++ +
Sbjct: 519 LLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQ 578
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
+EI A +++E I N+P ++T++ E G +SGGQKQRIA++RA++ + +L+LDE+
Sbjct: 579 DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDES 638
Query: 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
TS LD +E + L + +T + VAHRLS + +D I V+ KI++ GSH+EL+
Sbjct: 639 TSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL- 696
Query: 608 NPNSAYAALV 617
+ N YA+L+
Sbjct: 697 DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 166 bits (424), Expect = 8e-47
Identities = 82/219 (37%), Positives = 124/219 (56%), Gaps = 14/219 (6%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078
EL+ + FSYP + D +L ++ G+ + +VG +GSGKST+L L+ PT+G+V+
Sbjct: 1 ELKNLSFSYPDGARPAL-DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1079 VDGIDIKRLNLKSLRKHIALVQQEPA--LFATSIYENILYG--KDGASEGEVIEAAKLAN 1134
VDG D+ +L+LK LR+ + LV Q P F ++ E + +G G E E+ E + A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
+ L + S LSGGQKQRVAIA + +P+ILLLDE T+ LD R
Sbjct: 120 ELVGLEGLRD-RSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 1195 VQQALQRLMRKRTTIIVA-HRLSTIKN-ADQISVIESGK 1231
+ + L++L + TII+ H L + AD++ V+E GK
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 166 bits (424), Expect = 1e-46
Identities = 89/238 (37%), Positives = 134/238 (56%), Gaps = 36/238 (15%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IELRG+ S+ R + K +L VR G+ +A++G SGSGKST+L LI+ P +G+V
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 1078 MVDGIDIKRLN---LKSLRKHIALVQQEPALF-ATSIYENI---LYGKDGASEGEVIEAA 1130
++DG DI L+ L LR+ + ++ Q ALF + +++EN+ L SE E+ E
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 1131 --KLANAHSFISALPEGYSTKVGERGV------QLSGGQKQRVAIARAVLKNPEILLLDE 1182
KL VG RG +LSGG K+RVA+ARA+ +PE+LL DE
Sbjct: 118 LEKLE---------------AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE 162
Query: 1183 ATSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTI-KNADQISVIESGKIIEQGT 1237
T+ LD + V+ ++ L ++ T+I+V H L T AD+I+V+ GKI+ +GT
Sbjct: 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 7e-46
Identities = 79/220 (35%), Positives = 124/220 (56%), Gaps = 22/220 (10%)
Query: 1018 IELRGVHFSYPSRPEV--VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
I + F++ S + KD NL+V G+ +A+VG GSGKS++LS +L + +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1076 KVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASE--GEVIEAAKLA 1133
V S+ IA V QEP + +I ENIL+GK E +VI+A L
Sbjct: 61 SV-------------SVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL- 106
Query: 1134 NAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE-SE 1192
+ LP+G T++GE+G+ LSGGQKQR+++ARAV + +I LLD+ SA+D
Sbjct: 107 --EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 1193 RVVQQALQ-RLMRKRTTIIVAHRLSTIKNADQISVIESGK 1231
+ + + L+ +T I+V H+L + +ADQI V+++G+
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 2e-45
Identities = 83/238 (34%), Positives = 128/238 (53%), Gaps = 25/238 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
IE +D++ Y D LDIP G+I AL+G SG GKST++ L+ R + P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 437 LSGEILLDGNNIKGLDLK--WLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
GE+LLDG +I LD+ LR+++G+V Q+P F +I +N+ YG K ++
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
E A L +A L + + ++ G LSGGQ+QR+ ++RA+ P +LLLDE T
Sbjct: 118 ERVEEA-LRKA-----ALWDEVKDRLHALG--LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEEL 605
SALD S ++E + + T V+V H + R AD A + ++V+ G E++
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 2e-45
Identities = 83/240 (34%), Positives = 136/240 (56%), Gaps = 14/240 (5%)
Query: 382 IEFKDVSFCYPSR--PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
IE ++VS + V D L+IP G+I ++G SG+GKST++ LI P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 440 EILLDGNNIKGLD---LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAK 495
+ +DG ++ L L+ LRQ+IG++ Q L ++ T+ EN+ + + A + + +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
++E + + L ++ QLSGGQKQR+AI+RA+ NP ILL DEATSALD E+
Sbjct: 122 VAELLELV-GLSDK----ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176
Query: 556 ENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612
S+ E L + +G T V++ H + ++ D +AV+ ++V+ G+ E+ +NP A
Sbjct: 177 TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA 236
|
Length = 339 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 8e-45
Identities = 78/229 (34%), Positives = 124/229 (54%), Gaps = 26/229 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+EL+G+ +Y S V D +L V G+ +AL+G SG GK+T+L LI P +G++
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYG------KDGASEGEVIEAA 1130
++DG D+ + R++I +V Q+ ALF ++ ENI +G V E
Sbjct: 58 LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
+L ++ P +LSGGQ+QRVA+ARA+ + P +LLLDE SALD +
Sbjct: 116 ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1191 SERVVQQALQRLMRKR--TTIIVAHRLS-TIKNADQISVIESGKIIEQG 1236
+++ L+ L R+ TTI V H + AD+I+V+ G+I++ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 2e-44
Identities = 83/235 (35%), Positives = 132/235 (56%), Gaps = 26/235 (11%)
Query: 1018 IELRGVHFSYPSR--PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
IEL V ++ V D +L++ G+ ++G SG+GKST+L LI PT+G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1076 KVMVDGIDIKRLN---LKSLRKHIALVQQEPALFAT-SIYENILY-----GKDGAS-EGE 1125
V VDG D+ L+ L+ LR+ I ++ Q L ++ +++EN+ + G A +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1126 VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATS 1185
V E +L G S K QLSGGQKQRVAIARA+ NP+ILL DEATS
Sbjct: 122 VAELLELV-----------GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 1186 ALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
ALD E+ + + + L+ + R+ T +++ H + +K D+++V++ G+++E+GT
Sbjct: 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 6e-44
Identities = 81/243 (33%), Positives = 127/243 (52%), Gaps = 30/243 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+ + F Y +P I D + + G+ ++G +GSGKST+L + P +G+V
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEP-ALFATSIYENILYGK----------DGASEGEV 1126
++DG DI L+ K L K +A V Q P A F ++YE +L G+ E V
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATS 1185
EA +L +R V +LSGG++QRV IARA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 1186 ALDVESERVVQQALQRLMRKR--TTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSLV 1242
LD+ + V + L+ L R++ T ++V H L+ + AD + +++ GKI+ QGT ++
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
Query: 1243 ENE 1245
E
Sbjct: 228 TEE 230
|
Length = 258 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 6e-44
Identities = 83/241 (34%), Positives = 126/241 (52%), Gaps = 25/241 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE + F YP KD +L++ G+ + L+G +GSGKST+L L+ PT+G+V
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1078 MVDGIDIK-RLNLKSLRKHIALVQQEPA--LFATSIYENILYGKD--GASEGE----VIE 1128
+VDG+D +L LR+ + LV Q P LF ++ + + +G + G E V E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 1129 AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
A +L + P LSGGQKQRVAIA + PEILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 1189 VESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245
+ R + + L++L +T IIV H L + AD++ V++ GKI+ G + + +
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 1246 D 1246
+
Sbjct: 231 E 231
|
Length = 235 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 9e-44
Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 18/225 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E K +S Y S V D L + G+ +AL+G SG GK+T++ LI P SGEI
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATM--EEITRAAKLSE 498
L+DG ++ G+ + R+ IG+V Q+ ALF T+ ENI +G + EI +
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
+ + L R+ + LSGGQ+QR+A++RA+ + PS+LLLDE SALDA+
Sbjct: 116 ELVGLEGLLNRYPHE-------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 559 VQEALDRVM--VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTG 600
++E L + +G TT+ V H + AD IAV+ +IV+ G
Sbjct: 169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-43
Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 22/248 (8%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE+R + Y + + +V G+ L+G +G+GK+T+L ++ PT+G+
Sbjct: 4 VIEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENI-----LYGKDGASEGEVIEAA 1130
++V G D+ + +R+ I V QEP+L+ ++ EN+ LYG E IE
Sbjct: 62 ILVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL 120
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
+ G K ++ LSGG KQR++IA A+L +PE+L+LDE TS LD E
Sbjct: 121 --------LELF--GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 1191 SERVVQQALQRL--MRKRTTIIVAHRLSTI-KNADQISVIESGKIIEQGTHSSLVENEDG 1247
S R + + L+ L T ++ H L + D++ ++ GKII +GT L E G
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 1248 AYFKLINL 1255
+
Sbjct: 231 KGVIELEP 238
|
Length = 293 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 3e-43
Identities = 83/241 (34%), Positives = 130/241 (53%), Gaps = 23/241 (9%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----P 1072
IE+ ++ Y E K+ NL + + AL+G SG GKST+L + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1073 TAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG------KDGASEG 1124
GKV+ DG DI K++++ LR+ + +V Q+P F SIY+NI YG KD
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 1125 EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEAT 1184
E++E + L A AL + ++ + + LSGGQ+QR+ IARA+ PE+LLLDE T
Sbjct: 119 EIVEES-LKKA-----ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172
Query: 1185 SALDVESERVVQQALQRLMRKRTTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSLVE 1243
SALD + +++ +Q L +K T +IV H + + +D+ + G+++E G +
Sbjct: 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232
Query: 1244 N 1244
N
Sbjct: 233 N 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 6e-43
Identities = 81/231 (35%), Positives = 129/231 (55%), Gaps = 26/231 (11%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+EL+ V S+ S + KD NL + G+ + L+G SG GKST+L +I +PT+G+
Sbjct: 3 ELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYG--KDGASEGE----VIEA 1129
+++DG D+ L + ++ IA+V Q AL+ ++YENI +G G + E V E
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
AKL ++ P +QLSGGQ+QRVA+ARA+++ P++ LLDE S LD
Sbjct: 118 AKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1190 ESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
+ +++ +++L + TTI V H AD+I V+ G+I + GT
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 8e-43
Identities = 78/236 (33%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Query: 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
IE K+VS + V L +P G+I ++G SG+GKST+I I P SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 441 ILLDGNNIKGL---DLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKL 496
+L+DG ++ L +L+ R++IG++ Q L ++ T+ EN+ + A + + ++
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
E + + L ++ + QLSGGQKQR+ I+RA+ NP +LL DEATSALD E+
Sbjct: 122 LELLELV-GLEDKADAYPA----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 557 NSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
S+ L + +G T V++ H + ++ D +AV++ ++V+ G+ EE+ +NP
Sbjct: 177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 9e-43
Identities = 82/233 (35%), Positives = 125/233 (53%), Gaps = 26/233 (11%)
Query: 1018 IELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IEL+ V Y E V KD NL++ AG+ +A+VG SGSGKST+L+L+ PT+G+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 1077 VMVDGIDIKRLNLKSL----RKHIALVQQEPALFAT-SIYENILYG------KDGASEGE 1125
V+++G D+ +L+ K L RK I V Q L ++ EN+ G +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 1126 VIEAAKLAN-AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEAT 1184
E ++ + P +LSGGQ+QRVAIARA++ NP+I+L DE T
Sbjct: 122 AEELLEVLGLEDRLLKKKPS-----------ELSGGQQQRVAIARALINNPKIILADEPT 170
Query: 1185 SALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKNADQISVIESGKIIEQ 1235
LD ++ + V + L+ L ++R T I+V H K AD++ ++ GKI E+
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 154 bits (393), Expect = 1e-42
Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 15/219 (6%)
Query: 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442
E K++SF YP D L I G+ V +VG +GSGKST++ L+ P SGE+L
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 443 LDGNNIKGLDLKWLRQQIGLVNQEPA--LFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+DG ++ L LK LR+++GLV Q P F T+ E + +G ++ + E ++ EA+
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 501 SF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
+ L +R LSGGQKQR+AI+ + +P ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRDR-SPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 559 VQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVV-QGR 594
+ E L ++ G+T ++V H L + AD + V+ G+
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 154 bits (393), Expect = 1e-42
Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 30/238 (12%)
Query: 1018 IELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E++ + S+P+ V D + ++ G+++ LVG+SGSGKST+ IL PT+G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1077 VMVDGIDIKRLN---LKSLRKHIALVQQEP--AL-----FATSIYE--NILYGKDGASEG 1124
++ DG D+ +L+ K RK I +V Q+P +L I E I
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 1125 EVIEAAKLA---NAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
+ L ++ P +LSGGQ+QRVAIARA+ NP++L+ D
Sbjct: 122 KEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLIAD 170
Query: 1182 EATSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236
E TSALDV + + L++L + T + + H L + AD+++V+ +GKI+E+G
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 1e-42
Identities = 76/223 (34%), Positives = 131/223 (58%), Gaps = 22/223 (9%)
Query: 1016 GTIELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
G IE+ + Y P P V+ K+ + KV+AG+ + +VG++G+GKST++ + RF +
Sbjct: 5 GEIEVENLSVRYAPDLPPVL--KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1075 GKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLAN 1134
GK+ +DGIDI + L+ LR + ++ Q+P LF+ +I N L D S+ E+ A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN-LDPFDEYSDEEIYGA----- 116
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
+V E G+ LS GQ+Q + +ARA+LK P +L+LDEAT+++D ++ +
Sbjct: 117 -------------LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 1195 VQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGT 1237
+Q+ ++ T + +AHRL TI + D+I V+++G++ E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 2e-42
Identities = 82/234 (35%), Positives = 130/234 (55%), Gaps = 25/234 (10%)
Query: 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IEL+ V + +V KD +L V G+ ++G+SG+GKST++ I PT+G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1077 VMVDGIDIKRLNLKSL---RKHIALVQQEPALFAT-SIYENILY-----GKDGASEGE-V 1126
V+VDG D+ L+ K L R+ I ++ Q L ++ +++EN+ G A E V
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
+E +L A P QLSGGQKQRV IARA+ NP++LL DEATSA
Sbjct: 122 LELLELVGLEDKADAYPA-----------QLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1187 LDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
LD E+ + + L+ + R+ T +++ H + +K D+++V+E G+++E+GT
Sbjct: 171 LDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-42
Identities = 82/228 (35%), Positives = 119/228 (52%), Gaps = 23/228 (10%)
Query: 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IEL+ + +Y E V K +L + G+ +A+VG SGSGKST+L+++ PT+G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1077 VMVDGIDIKRLNLKSL----RKHIALVQQEPALFAT-SIYENI-----LYGKDGASEGEV 1126
V VDG DI +L+ K L R+HI V Q L + EN+ L G E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
E L L + + +LSGGQ+QRVAIARA+ +P+I+L DE T
Sbjct: 121 AEEL-LERVG-----LGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEPTGN 170
Query: 1187 LDVESERVVQQALQRLMRKR-TTIIVA-HRLSTIKNADQISVIESGKI 1232
LD E+ + V + L+ L ++ TTI+V H + AD+I + GKI
Sbjct: 171 LDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 5e-42
Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 41/219 (18%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ +VSF YP + + L++ G+ +AL+G SGSGKST++ L+ +P GEI
Sbjct: 1 LSINNVSFSYPEQEQQ-VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
LDG + L+ K L I ++NQ P LF TT+R N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
G + SGG++QR+A++R ++++ I+LLDE T LD +E +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600
+ V+ +T + + H L+ I + D I ++ KI+ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 6e-42
Identities = 86/239 (35%), Positives = 136/239 (56%), Gaps = 15/239 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E ++VS + D D LDI G+ V L+G SG GK+T++ +I F +P SGEI
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG-KDDATMEEITRAAKLSEA 499
LLDG +I D+ ++ IG+V Q ALF T+ EN+ +G K +++ A++ EA
Sbjct: 63 LLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+ + E F + + QLSGGQ+QR+A++RA+V P +LLLDE SALDA+ +
Sbjct: 121 LELV--GLEGFADR---KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175
Query: 560 QEALDRV--MVGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
++ L + +G T V V H + + +D IAV+ +I + G+ EE+ P + + A
Sbjct: 176 RKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVA 234
|
Length = 352 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 7e-42
Identities = 75/220 (34%), Positives = 111/220 (50%), Gaps = 48/220 (21%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+EL+ V Y + + D +L + AG+ +AL+G SGSGKST+L I +P +G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1078 MVDGIDIKRLN--LKSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLAN 1134
++DG D+ L L LR+ I +V Q+ ALF ++ ENI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
LSGGQ+QRVA+ARA+ +P++LLLDE TSALD + R
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1195 VQQALQRL--MRKRTTIIVAHRLS-TIKNADQISVIESGK 1231
V+ L+ L T ++V H L + AD++ V+ GK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-41
Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 44/216 (20%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E ++VSF YP + + I G+ +A++G SGSGKST+ LI P SG +
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
LDG +I D L +G + Q+ LF+ +I ENIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
SGGQ+QR+ ++RA+ NP IL+LDE S LD E E ++ +
Sbjct: 98 --------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 562 ALDRV-MVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
A+ + G T +V+AHR T+ +AD I V++ ++
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 2e-41
Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 42/250 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE + ++ + R + LD+ G+I+A++G SGSGKST++ LI P SGE+
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 442 LLDGNNIKGL---DLKWLRQQIGLVNQEPALF-ATTIRENI---LYGKDDATMEEITRAA 494
L+DG +I GL +L LR+++G++ Q ALF + T+ EN+ L + EEI
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 495 KLSEAMSFISNLPERFETQVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEAT 548
VG RG +LSGG K+R+A++RA+ +P +LL DE T
Sbjct: 118 LEKLEA-------------VGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 549 SALD-------AESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600
+ LD + S+++ L G T+++V H L T AD IAV+ KIV G
Sbjct: 165 AGLDPIASGVIDDLIRSLKKEL-----GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219
Query: 601 SHEELISNPN 610
+ EEL ++ +
Sbjct: 220 TPEELRASDD 229
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-41
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 48/218 (22%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE+R + Y + D +L V G+ L+G +G+GK+T++ +IL P +G++
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAH 1136
V G DIK+ + +++ I + +EP+L+ ++ EN+
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQ 1196
+LSGG KQR+A+A+A+L +PE+L+LDE TS LD ES R
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 1197 QALQRLMRKRTTIIVA-HRLSTIKN-ADQISVIESGKI 1232
+ L+ L ++ TI+++ H L + D+++++ +G+I
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 3e-41
Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 27/231 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+R V S+ D +L ++ G+ + L+G SG GK+T+L +I F P++G++
Sbjct: 6 LEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYG-------KDGASEGEVIEA 1129
++DG DI ++ ++ I +V Q ALF ++ EN+ +G K + V EA
Sbjct: 63 LLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
+L F P QLSGGQ+QRVA+ARA++ P++LLLDE SALD
Sbjct: 121 LELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 1190 ESERVVQQALQRLMRKR--TTIIVAH-RLSTIKNADQISVIESGKIIEQGT 1237
+ +++ L+ L R+ T + V H + + +D+I+V+ G+I + GT
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 3e-41
Identities = 89/254 (35%), Positives = 138/254 (54%), Gaps = 37/254 (14%)
Query: 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
+ E IE+RGV S+ R VI +L V G+ +A++G SGSGKST+L LIL
Sbjct: 3 ASPEPLIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59
Query: 1072 PTAGKVMVDGIDIKRLN---LKSLRKHIALVQQEPALF-ATSIYENI---LYGKDGASEG 1124
P G++++DG DI +L+ L +RK + ++ Q+ ALF + +++EN+ L E
Sbjct: 60 PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES 119
Query: 1125 EVIEAA--KLANAHSFISALPEGYSTKVGERGV-------QLSGGQKQRVAIARAVLKNP 1175
+ E KL VG RG +LSGG ++RVA+ARA+ +P
Sbjct: 120 LIRELVLMKLE---------------LVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164
Query: 1176 EILLLDEATSALDVESERVVQQALQRLMRK--RTTIIVAHRLSTIKN-ADQISVIESGKI 1232
E+L LDE TS LD S V+ + ++ L T I+V H L ++ AD+++V+ GK+
Sbjct: 165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224
Query: 1233 IEQGTHSSLVENED 1246
I +GT L+ ++D
Sbjct: 225 IAEGTPEELLASDD 238
|
Length = 263 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 4e-41
Identities = 80/230 (34%), Positives = 133/230 (57%), Gaps = 2/230 (0%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G + + ++ P + + + AG+ + ++G SGSGKST+ L+ + P SG
Sbjct: 333 GALSVERLTAAPPGQKKPILKG-ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
+ LDG +++ D + L + IG + Q+ LF TI ENI ++A E++ AA+L+
Sbjct: 392 SVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGV 451
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
I LP+ ++T++GE G LSGGQ+QRIA++RA+ +P +++LDE S LD+E E ++
Sbjct: 452 HELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAAL 511
Query: 560 QEALDRVMV-GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
A+ G T VV+AHR S + + D I V+Q +I G EE+++
Sbjct: 512 AAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 4e-41
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 29/231 (12%)
Query: 1018 IELRGVHFSYPS-RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+R V +Y V +D +L V G+ +ALVG SG GKST+L +I PT+G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG------KDGASEGEVIEA 1129
V+VDG + V Q+ AL ++ +N+ G + E
Sbjct: 61 VLVDGEPVTGPG-----PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
+L F +A P QLSGG +QRVA+ARA+ +P++LLLDE SALD
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 1190 ESERVVQQALQRLMRKR--TTIIVAHRLS-TIKNADQISVIES--GKIIEQ 1235
+ +Q+ L + R+ T ++V H + + AD++ V+ + G+I+ +
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 1e-40
Identities = 80/248 (32%), Positives = 128/248 (51%), Gaps = 24/248 (9%)
Query: 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070
T IE+R ++ Y + KD NL + K AL+G SG GKST+L + R
Sbjct: 1 ETMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 1071 DP-----TAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG------ 1117
D G+V++DG +I ++++ LR+ + +V Q+P F SIY+N+ YG
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 1118 KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177
KD + V + K A AL + ++ + + LSGGQ+QR+ IARA+ PE+
Sbjct: 118 KDKELDEIVESSLKKA-------ALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEV 170
Query: 1178 LLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLS-TIKNADQISVIESGKIIEQG 1236
LL+DE TSALD S +++ + L +K T +IV H + + +D + G+++E G
Sbjct: 171 LLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230
Query: 1237 THSSLVEN 1244
+ N
Sbjct: 231 PTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 2e-40
Identities = 83/235 (35%), Positives = 132/235 (56%), Gaps = 2/235 (0%)
Query: 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
L + GH+ ++V+ P + AG+ +A++G SGSGKST+ LI
Sbjct: 309 PLPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGI 367
Query: 434 YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRA 493
+ P SG + LDG ++K D + + IG + Q+ LF T+ ENI ++A E+I A
Sbjct: 368 WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEA 427
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
AKL+ I LP+ ++T +G G LSGGQ+QRIA++RA+ +P +++LDE S LD
Sbjct: 428 AKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487
Query: 554 ESENSVQEALDRVMV-GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
E E ++ A+ + G T VV+ HR S + D I V+Q +I + G +E+++
Sbjct: 488 EGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 2e-40
Identities = 82/244 (33%), Positives = 125/244 (51%), Gaps = 27/244 (11%)
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
IE +++SF YP A L+I G+ V L+G +GSGKST++ L+ +P S
Sbjct: 1 LRMIEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 439 GEILLDGNNIK-GLDLKWLRQQIGLVNQEPA--LFATTIRENILYGK-----DDATMEEI 490
GE+L+DG + L LRQ++GLV Q P LF T+ + + +G +EE
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE- 117
Query: 491 TRAAKLSEAMSFISNLPER--FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
R A+ E + + L +R F LSGGQKQR+AI+ + P ILLLDE T
Sbjct: 118 -RVAEALELVG-LEELLDRPPFN---------LSGGQKQRVAIAGVLAMGPEILLLDEPT 166
Query: 549 SALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
+ LD + + E L ++ G+T ++V H L + AD + V+ KI+ G E+
Sbjct: 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226
Query: 606 ISNP 609
++
Sbjct: 227 FNDA 230
|
Length = 235 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-40
Identities = 88/243 (36%), Positives = 139/243 (57%), Gaps = 27/243 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE + V+ S D I D LD+P G+I+A++GGSGSGKST++ LI P GEI
Sbjct: 9 IEVRGVTK---SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 442 LLDGNNIKGL---DLKWLRQQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLS 497
L+DG +I L +L +R+++G++ Q+ ALF + T+ EN+ + + E T KL
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF-----PLREHT---KLP 117
Query: 498 EAMSFISNLPERFETQVGERGI-------QLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
E++ I L VG RG +LSGG ++R+A++RAI +P +L LDE TS
Sbjct: 118 ESL--IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 551 LDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607
LD S + E + + +G T ++V H L ++ AD +AV+ K++ G+ EEL++
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
Query: 608 NPN 610
+ +
Sbjct: 236 SDD 238
|
Length = 263 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-40
Identities = 87/238 (36%), Positives = 136/238 (57%), Gaps = 22/238 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF++VS Y ++ D L I G+ + L+G SGSGK+T + +I R EP SGEI
Sbjct: 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI-----LYGKDDATMEEITRAAK 495
L+DG +I LD LR++IG V Q+ LF T+ ENI L G D +++ RA +
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK--RADE 116
Query: 496 LSEAMSFISNLPERFETQVGER-GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
L + + L + +R +LSGGQ+QR+ ++RA+ +P ILL+DE ALD
Sbjct: 117 LLDLV----GLDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPI 169
Query: 555 SENSVQEALDRVM--VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNP 609
+ +QE + + +G+T V V H + ++ AD IAV+ +IV+ + +E+++NP
Sbjct: 170 TRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227
|
Length = 309 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-40
Identities = 82/244 (33%), Positives = 134/244 (54%), Gaps = 21/244 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF++V+ Y + L+I G+ + L+G SGSGK+T + +I R EP SGEI
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI-----LYGKDDATMEEITRAAK 495
+DG +I+ D LR++IG V Q+ LF T+ ENI L + E RA +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE--RADE 116
Query: 496 LSEAMSF-ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
L + + +R+ +LSGGQ+QR+ ++RA+ +P +LL+DE ALD
Sbjct: 117 LLALVGLDPAEFADRYPH-------ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169
Query: 555 SENSVQEALDRV--MVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
+ + +QE R+ +G+T V V H + R AD IA+++ +IV+ G+ +E++ +P +
Sbjct: 170 TRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAN 229
Query: 612 AYAA 615
+ A
Sbjct: 230 DFVA 233
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 3e-40
Identities = 80/220 (36%), Positives = 113/220 (51%), Gaps = 49/220 (22%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E K+VS Y + + L+I AG+IVAL+G SGSGKST++ I EP SG I
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 442 LLDGNNIKGLD--LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSE 498
L+DG ++ L+ L LR++IG+V Q+ ALF T+ ENI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
LSGGQ+QR+A++RA+ +P +LLLDE TSALD +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 559 VQEALDRV--MVGRTTVVVAHRLS-TIRNADVIAVV-QGR 594
V+ L + +G T V+V H L R AD + V+ G+
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 4e-40
Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 23/231 (9%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IE++ + S+ + + K +L V G+ + ++G SGSGKST+L + +P +G
Sbjct: 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS 58
Query: 1077 VMVDGIDI-KRLNLKSLRKHIALVQQEPALFA-TSIYENILYG----KDGASEGEVIEAA 1130
+ VDG D+ + ++ LR+ + +V Q+ LF ++ EN+ K S+ E E A
Sbjct: 59 ITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK-KLSKAEAREKA 117
Query: 1131 KLANAHSFISALPE--GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
L E G + K QLSGGQ+QRVAIARA+ +P+++L DE TSALD
Sbjct: 118 L---------ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
Query: 1189 VESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
E V ++ L T IIV H + + AD++ ++ GKIIE+G
Sbjct: 169 PELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 6e-40
Identities = 71/215 (33%), Positives = 104/215 (48%), Gaps = 60/215 (27%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078
E+ + F Y R + +L ++AG+ +ALVG +GSGKST+L I PT+G+++
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1079 VDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSF 1138
+DG DI +L L+ LR+
Sbjct: 58 IDGKDIAKLPLEELRRR------------------------------------------- 74
Query: 1139 ISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQA 1198
I +P QLSGGQ+QRVA+ARA+L NP++LLLDE TS LD S + +
Sbjct: 75 IGYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 1199 LQRLMRK-RTTIIVAHRLSTIKNA-DQISVIESGK 1231
L+ L + RT IIV H + A D++ V++ GK
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 7e-40
Identities = 66/245 (26%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 1017 TIELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+ +R + Y + +L++ G+++ +VG+SGSGKST+ L+ P++G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1076 KVMVDGIDI-KRLNLKSLRKHIALVQQEPAL-------FATSIYENILYGKDGASEGEVI 1127
+++DG + + K+ + + +V Q+P + E + S+ +
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
E LP + + R +LSGGQ+QR+AIARA++ P++L+LDE TSAL
Sbjct: 123 ELLDQV-------GLPPSFLDR---RPHELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172
Query: 1188 DVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
DV + + L L ++R T + ++H L+ +++ D+I+V+++G+I+E G L+ +
Sbjct: 173 DVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
Query: 1245 EDGAY 1249
Y
Sbjct: 233 PSHPY 237
|
Length = 252 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-39
Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 28/221 (12%)
Query: 382 IEFKDVSFCYPSRPDVA--IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
I +D SF + S L++P G++VA+VG GSGKS+++S + E LSG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK--DDATMEEITRAAKLS 497
+ + G+ I V+QEP + TIRENIL+GK D+ E++ +A L
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES-- 555
+ LP+ T++GE+GI LSGGQKQRI+++RA+ + I LLD+ SA+DA
Sbjct: 108 PD---LEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 556 ---ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593
EN + L + +T ++V H+L + +AD I V+
Sbjct: 165 HIFENCILGLL---LNNKTRILVTHQLQLLPHADQIVVLDN 202
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 1e-39
Identities = 81/244 (33%), Positives = 125/244 (51%), Gaps = 30/244 (12%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +++SF Y +P I D IP G+I ++G +GSGKST++ + +P SGE+
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP-ALFATTIRENILYGK----------DDATMEEI 490
LLDG +I L K L +++ V Q P A F T+ E +L G+ E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATS 549
A +L +R + +LSGG++QR+ I+RA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 550 ALDAESENSVQEALDRVMV--GRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELI 606
LD + V E L + G T V+V H L+ R AD + +++ KIV G+ EE++
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
Query: 607 SNPN 610
+ N
Sbjct: 228 TEEN 231
|
Length = 258 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 3e-39
Identities = 78/274 (28%), Positives = 139/274 (50%), Gaps = 33/274 (12%)
Query: 999 RKTQVIGDIGEELTNVEGTIELRGVHFSYPSRP--------EVVIFKDFNLKVRAGKSMA 1050
++I E + +R + Y SR EV D + +R G+++
Sbjct: 262 GDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLG 321
Query: 1051 LVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID--IKRLNLKSLRKHIALVQQEPALFAT 1108
LVG+SGSGKST+ ++ P++G ++ DG D + L+ LR+ I +V Q+P +++
Sbjct: 322 LVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSS 379
Query: 1109 -----SIYENI-----LYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLS 1158
++ + + ++G +E A++A + LP + + +LS
Sbjct: 380 LNPRMTVGDILAEPLRIHGGGSGAERR----ARVAELLELV-GLPPEFLDR---YPHELS 431
Query: 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTIIVAHRLS 1216
GGQ+QRVAIARA+ P++L+LDE SALDV + V L+ L + T + ++H L+
Sbjct: 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491
Query: 1217 TIKN-ADQISVIESGKIIEQGTHSSLVENEDGAY 1249
++ AD+++V+ G+I+E+G + EN Y
Sbjct: 492 VVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPY 525
|
Length = 539 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 8e-39
Identities = 78/243 (32%), Positives = 134/243 (55%), Gaps = 23/243 (9%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----- 435
IE ++++ Y + A+ + LDIP ++ AL+G SG GKST++ + R +
Sbjct: 1 AIEIENLNLFYGEK--EALKN-INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 436 PLSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATM 487
+ G++L DG +I K +D+ LR+++G+V Q+P F +I +NI YG KD +
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
+EI + L +A L + + ++ + + LSGGQ+QR+ I+RA+ P +LLLDE
Sbjct: 118 DEIVEES-LKKA-----ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171
Query: 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELI 606
TSALD + ++E + + T V+V H + R +D A ++V+ G E++
Sbjct: 172 TSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231
Query: 607 SNP 609
+NP
Sbjct: 232 TNP 234
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 9e-39
Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 40/248 (16%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE+ + +YP+ KD +L + G+ +AL+G SG+GKST+L + +PT+G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1078 MVDGIDI---KRLNLKSLRKHIALVQQEPALFA-TSIYENILYGKDGASEGEVIEAAKLA 1133
++DG DI K L+ LR+ I ++ Q+ L S+ EN+L G+
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------L 104
Query: 1134 NAHSFISALPEGYS-----------TKVG------ERGVQLSGGQKQRVAIARAVLKNPE 1176
S +L + +VG +R QLSGGQ+QRVAIARA+++ P+
Sbjct: 105 GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164
Query: 1177 ILLLDEATSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIK-NADQISVIESGKII 1233
++L DE ++LD S R V L+R+ R+ T I+ H++ + AD+I ++ G+I+
Sbjct: 165 LILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
Query: 1234 EQGTHSSL 1241
G + L
Sbjct: 225 FDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 1e-38
Identities = 74/265 (27%), Positives = 133/265 (50%), Gaps = 6/265 (2%)
Query: 65 ACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSC 124
A + + + F L+ L L + + SL + ++V +L +
Sbjct: 4 AILLLILAGATALVFPLLLGRF-LDSLIDGNGDERSSLISLAILLIAVGVLQGLLL--QG 60
Query: 125 WMYTGERQAAKMRMAYLRSMLNQDISLFDT---EASTGEVISAITSDIIVVQDALSEKVG 181
Y GER ++R R++L Q + L + S GE+ S +T+D+ ++D L +K+G
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 182 NFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAG 241
F ++ +GGFI+ F W+++LV L+I+PL+ L + A L + +K+Y KAG
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 242 EIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWS 301
+AEE + +RTV+AF E+ ++ Y +AL + K G K + GL G + +LS++
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYA 240
Query: 302 LLVWYVSVVVHKHISNGGESFTTML 326
L +W+ + +V + G F +
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAFLS 265
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 2e-38
Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 35/246 (14%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE K++S + D + L + G++V ++G SGSGKST++ + EP SG I
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 442 LLDGNNIKG-LDLKWLRQQIGLVNQEPALFA-TTIRENILYG--------KDDATMEEIT 491
+DG ++ D+ LR+++G+V Q+ LF T+ EN+ K +A E
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEA--RE-- 115
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
+A +L E + L ++ + QLSGGQ+QR+AI+RA+ +P ++L DE TSAL
Sbjct: 116 KALELLEKV----GLADKADAYPA----QLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167
Query: 552 DAESENSVQEALDRVMV-----GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
D E V E LD VM G T ++V H + R AD + + KI++ G EE
Sbjct: 168 DPE---LVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
Query: 606 ISNPNS 611
NP S
Sbjct: 224 FDNPKS 229
|
Length = 240 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-38
Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 46/222 (20%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078
E+ + Y R + D +L + AG+ + ++G +G+GKST+L + P++G+++
Sbjct: 1 EVENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1079 VDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSF 1138
+DG D+ L+ K L + IA V Q AL E++ A LA
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ--AL-------------------ELLGLAHLA----- 91
Query: 1139 ISALPEGYSTKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
+R +LSGG++QRV +ARA+ + P ILLLDE TS LD+ + + +
Sbjct: 92 -------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 1198 ALQRLMRKR--TTIIVAHRLS-TIKNADQISVIESGKIIEQG 1236
L+RL R+R T ++V H L+ + AD++ +++ G+I+ QG
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 3e-38
Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 25/225 (11%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ----QI 460
LD+ G+I ++G SGSGKST++ I R EP SG++L+DG +I + K LR+ +I
Sbjct: 45 LDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104
Query: 461 GLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
+V Q AL T+ EN+ +G + + R + +EA+ VG G
Sbjct: 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALE-----------LVGLEGW 153
Query: 520 ------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRT 571
+LSGG +QR+ ++RA+ +P ILL+DEA SALD +Q+ L R+ + +T
Sbjct: 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT 213
Query: 572 TVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
V + H L +R D IA+++ ++V+ G+ EE+++NP + Y
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 5e-38
Identities = 75/235 (31%), Positives = 125/235 (53%), Gaps = 22/235 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE ++++ Y D D ++ G+I L+G +G+GK+T++ ++ +P SGEI
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAK 495
L+ G ++ + +R++IG V QEP+L+ T+REN+ LYG EE R +
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEE--RIEE 119
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
L E L ++ +V LSGG KQR++I+ A++ +P +L+LDE TS LD ES
Sbjct: 120 LLELF----GLEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 556 ENSVQEAL-DRVMVGRTTVVVA-HRLSTI-RNADVIAVVQGRKIVKTGSHEELIS 607
+ E L + G T++++ H L D + ++ KI+ G+ EEL
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 5e-38
Identities = 72/224 (32%), Positives = 110/224 (49%), Gaps = 27/224 (12%)
Query: 382 IEFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E ++VS Y V + L + G+ VALVG SG GKST++ +I P SGE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEA 499
+L+DG + G G V Q+ AL T+ +N+ G ++ + +A A
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALG---LELQGVPKAEARERA 112
Query: 500 MSFISNLPERFETQVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
+ VG G QLSGG +QR+A++RA+ +P +LLLDE SALDA
Sbjct: 113 EELLE--------LVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 554 ESENSVQEALDRVMV--GRTTVVVAHRLS-TIRNADVIAVVQGR 594
+ +QE L + G+T ++V H + + AD + V+ R
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSAR 208
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 6e-38
Identities = 74/207 (35%), Positives = 104/207 (50%), Gaps = 32/207 (15%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+ GV S+ V + +D NL V G+ +A++G SG GKST+L LI PT+G+V
Sbjct: 4 LEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG--KDGASEGEVIEAAKLAN 1134
++DG + I V QE AL ++ +N+ G G S+ E E AK
Sbjct: 61 LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAK--- 112
Query: 1135 AHSFISALPEGYSTKVGERGV------QLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
L VG G QLSGG +QRVAIARA+ P++LLLDE ALD
Sbjct: 113 -----ELL-----ELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162
Query: 1189 VESERVVQQALQRLMR--KRTTIIVAH 1213
+ +Q L RL ++T ++V H
Sbjct: 163 ALTREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 1e-37
Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 25/226 (11%)
Query: 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL 1092
V D +L VR G+ ++G SGSGKST+L I R +PT+GKV++DG DI ++ K L
Sbjct: 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKEL 96
Query: 1093 ----RKHIALVQQEPALFA-TSIYENILYGKD--GASEGE----VIEAAKLANAHSFISA 1141
RK I++V Q AL ++ EN+ +G + G E EA +L +
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK 156
Query: 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
P+ +LSGG +QRV +ARA+ +P+ILL+DEA SALD R +Q L R
Sbjct: 157 YPD-----------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLR 205
Query: 1202 L--MRKRTTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSLVEN 1244
L ++T + + H L ++ D+I++++ G++++ GT ++ N
Sbjct: 206 LQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-37
Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 16/231 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE + V +S I KD ++K G +VG SG+GKST++ LI R DPT G +
Sbjct: 4 IEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHS 1137
++DG+DIK +++ LR+ I +V Q+P LF ++ +NI YG +++ K +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP-------MLKGEKNVDVEY 113
Query: 1138 FISALPEGYSTKVGERGVQ-LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQ 1196
++S + G + + R V+ LSGG+ QRV+IAR + NPE+LLLDE TSALD S +++
Sbjct: 114 YLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 1197 QALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
+ + +L K T I + H + K D + + G ++E N
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222
|
Length = 241 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 1e-37
Identities = 80/243 (32%), Positives = 135/243 (55%), Gaps = 30/243 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE++ + +YP KD NL++ G+ +A++G SG+GKST+L + DPT+G++
Sbjct: 4 IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 1078 MVDGIDIKRLN---LKSLRKHIALVQQEPALFA-TSIYENILYGKDGA-----------S 1122
+ +G+ I +L L+ LR+ I ++ Q+ L S+ EN+L G+ G S
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 1123 EGEVIEAAKLANAHSFISALPE-GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
+ + +A + AL G K +R LSGGQ+QRVAIARA+++ P+I+L D
Sbjct: 122 KEDKAQA---------LDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILAD 172
Query: 1182 EATSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGTH 1238
E ++LD ES + V L+ + ++ T I+ H++ K AD+I +++G+I+ G
Sbjct: 173 EPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232
Query: 1239 SSL 1241
S L
Sbjct: 233 SEL 235
|
Length = 258 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-37
Identities = 80/241 (33%), Positives = 134/241 (55%), Gaps = 22/241 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS--- 438
IE +D++ Y + A+ D LDIP K+ AL+G SG GKST++ + R + +
Sbjct: 8 IEVRDLNLYYGDK--HALKD-INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 439 --GEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG-----KDDATMEE 489
GE+LLDG NI +D+ LR+++G+V Q+P F +I +N+ YG D ++E
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
I ++ L +A L + + ++ + + LSGGQ+QR+ I+RA+ P +LL+DE TS
Sbjct: 125 IVESS-LKKA-----ALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178
Query: 550 ALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISN 608
ALD S ++E + + T V+V H + R +D A ++V+ G +++ +N
Sbjct: 179 ALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238
Query: 609 P 609
P
Sbjct: 239 P 239
|
Length = 253 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-37
Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 30/229 (13%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE++ +H S+ + K +L V+ G+ + ++G SGSGKST+L I +P +G +
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1078 MVDGIDI--KRLNLKSLRKHIALVQQEPALFA-TSIYENILYGK---DGASEGEVIEAAK 1131
++DG+ + + N+ LR+ + +V Q+ LF ++ ENI G S+ E E A
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERA- 116
Query: 1132 LANAHSFISALPEGYSTKVG------ERGVQLSGGQKQRVAIARAVLKNPEILLLDEATS 1185
KVG QLSGGQ+QRVAIARA+ NP+++L DE TS
Sbjct: 117 ------------LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTS 164
Query: 1186 ALDVESERVVQQALQRLMRKRTT-IIVAHRLSTIKN-ADQISVIESGKI 1232
ALD E V ++ L + T ++V H + + AD++ ++ G+I
Sbjct: 165 ALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-37
Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 13/226 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE V Y + V + NL++ G+ + L+G SGSGK+T + +I R +PT+G++
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENI-LYGK-DGASEGEVIEAAKLAN 1134
+DG DI+ + LR+ I V Q+ LF ++ ENI L K + ++ E A
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD--E 116
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
+ + P ++ + +LSGGQ+QRV +ARA+ +P +LL+DE ALD +
Sbjct: 117 LLALVGLDPAEFADRYPH---ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173
Query: 1195 VQQALQRLMRK--RTTIIVAHRL-STIKNADQISVIESGKIIEQGT 1237
+Q+ +RL ++ +T + V H + + AD+I+++++G+I++ GT
Sbjct: 174 LQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 3e-37
Identities = 73/257 (28%), Positives = 128/257 (49%), Gaps = 44/257 (17%)
Query: 1018 IELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP---- 1072
+E++ + S+P+ VV + +++ G+ + +VG+SGSGKS + I+
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 1073 -TAGKVMVDGIDIKRLNLKSLRK----HIALVQQEPALFATS----------IYENILYG 1117
G+++ DG D+ L+ K LRK IA++ Q+P TS I E +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM---TSLNPVMTIGDQIAEVLRLH 118
Query: 1118 KDGASEGEVIEAA-------KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170
G S+ E E A + + + + P +LSGG +QRV IA A
Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDPERRLKSYP-----------HELSGGMRQRVMIAMA 167
Query: 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTT--IIVAHRLSTIKN-ADQISVI 1227
+ NP++L+ DE T+ALDV + + L+ L R++ T I++ H L + AD+++V+
Sbjct: 168 LALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVM 227
Query: 1228 ESGKIIEQGTHSSLVEN 1244
+G+I+E+G + +N
Sbjct: 228 YAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 3e-37
Identities = 87/238 (36%), Positives = 127/238 (53%), Gaps = 14/238 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE ++VS Y VA+ D LDI G+ L+G SG GK+T++ LI F P SGEI
Sbjct: 1 IELENVSKFYGG--FVAL-DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
LLDG +I L ++ + V Q ALF T+ ENI +G + + +++EA+
Sbjct: 58 LLDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ + E + QLSGGQ+QR+AI+RA+V P +LLLDE ALD + +Q
Sbjct: 116 DLV-----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170
Query: 561 EALDRV--MVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
L R+ +G T V V H + +D IAV+ KI + G+ EE+ P + + A
Sbjct: 171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVA 228
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 8e-37
Identities = 78/243 (32%), Positives = 141/243 (58%), Gaps = 2/243 (0%)
Query: 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070
L + G I++ + Y + + V+ K ++ G+ + + G++GSGKS++ R
Sbjct: 13 LVGLGGEIKIHDLCVRYENNLKPVL-KHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV 71
Query: 1071 DPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAA 1130
D GK+++DGIDI +L L +LR ++++ Q+P LF+ SI N L + ++ + EA
Sbjct: 72 DIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEAL 130
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
++A + + +LP G V E G S GQ+Q +ARA ++ IL++DEAT+++D+
Sbjct: 131 EIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190
Query: 1191 SERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYF 1250
+E ++Q+ + RT + +AHR+STI +AD + V+ G ++E T +L+ EDG +
Sbjct: 191 TENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFA 250
Query: 1251 KLI 1253
L+
Sbjct: 251 SLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 22/228 (9%)
Query: 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
IE K+VS Y V L+I AG+ VA+VG SGSGKST+++L+ +P SGE
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 441 ILLDGNNIKGLDLKWL----RQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEI 490
+L++G ++ L K L R++IG V Q L T+ EN+ + GK +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR- 120
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
A +L E + L +R + +LSGGQ+QR+AI+RA++ NP I+L DE T
Sbjct: 121 -AAEELLEVL----GLEDRLLKKKPS---ELSGGQQQRVAIARALINNPKIILADEPTGN 172
Query: 551 LDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
LD+++ V E L + G+T ++V H + AD + ++ KI
Sbjct: 173 LDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 3e-36
Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 26/230 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ELRG+ S+ + + + +L + G+ + L+G SG GK+TVL LI F P +G++
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG----KDGASEGE--VIEAA 1130
M+DG DI ++ + +H+ V Q ALF +++EN+ +G K A+E V+EA
Sbjct: 72 MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
++ F P QLSGGQ+QRVAIARAV+ P++LLLDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 1191 SERVVQQALQRLMRKR--TTIIVAH-RLSTIKNADQISVIESGKIIEQGT 1237
+ +Q L+ L RK T + V H + + +D+I V+ G+I + GT
Sbjct: 179 LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 4e-36
Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 22/223 (9%)
Query: 380 GHIEFKDVSFCYPSRPDVA-IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
G IE +++S Y PD+ + + AG+ + +VG +G+GKST+I + RF E
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSE 498
G+I +DG +I + L+ LR + ++ Q+P LF+ TIR N L D+ + EEI A ++SE
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN-LDPFDEYSDEEIYGALRVSE 121
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
G+ LS GQ+Q + ++RA++K P +L+LDEAT+++D ++
Sbjct: 122 G------------------GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 559 VQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601
+Q+ + T + +AHRL TI + D I V+ ++ +
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 6e-36
Identities = 83/231 (35%), Positives = 112/231 (48%), Gaps = 29/231 (12%)
Query: 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKST---VISLIERFYEPL 437
IE K++S Y + V L I G+ VA+VG SGSGKST ++ ++R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 438 SGEILLDGNNIKGLDLKWL----RQQIGLVNQEPALFAT-TIRENI-----LYGKDDATM 487
SGE+ +DG +I L K L R+ IG V Q L T EN+ L G
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
E RA +L E + L +R +LSGGQ+QR+AI+RA+ +P I+L DE
Sbjct: 118 RE--RAEELLERV----GLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEP 167
Query: 548 TSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
T LD+E+ V E L + G T VVV H AD I ++ KI
Sbjct: 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 9e-36
Identities = 78/237 (32%), Positives = 133/237 (56%), Gaps = 31/237 (13%)
Query: 1018 IELRGVHFSYP-SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
IEL+ + +P + + +L + AG+ ++G SG+GKST++ I PT+G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1077 VMVDGIDIKRLN---LKSLRKHIALVQQEPALFAT-SIYENI-----LYGKDGAS----E 1123
V+VDG D+ L+ L+ R+ I ++ Q L ++ ++++N+ L G A
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 1124 GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183
E++E L++ A QLSGGQKQRVAIARA+ NP++LL DEA
Sbjct: 122 TELLELVGLSDKADRYPA--------------QLSGGQKQRVAIARALASNPKVLLCDEA 167
Query: 1184 TSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
TSALD + R + + L+ + R+ T +++ H + +K D+++VI++G+++EQGT
Sbjct: 168 TSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-35
Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 22/243 (9%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E K+V + + LDI G+ V L+G SG GKST++ +I EP SGE
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATM--EEITRAAKLS 497
IL+DG ++ L + ++ I +V Q AL+ T+ ENI +G + EI + K
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+ + +L R + +QLSGGQ+QR+A++RA+V+ P + LLDE S LDA+
Sbjct: 118 AKLLGLEHLLNR-------KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRV 170
Query: 558 SVQEALDRV--MVGRTTVVVAHRL---STIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
++ + ++ +G TT+ V H T+ AD I V+ +I + G+ EL P +
Sbjct: 171 LMRSEIKKLHERLGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELYERPANL 228
Query: 613 YAA 615
+ A
Sbjct: 229 FVA 231
|
Length = 338 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-35
Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 24/238 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE V Y ++ D NL + G+ + L+G SGSGK+T L +I R +PT+G++
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENI-----LYGKDGA-SEGEVIEAA 1130
++DG DI L+ LR+ I V Q+ LF ++ ENI L G D + E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 1131 KLANAHSFISALPEGYSTKVGER-GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
L L + +R +LSGGQ+QRV +ARA+ +P ILL+DE ALD
Sbjct: 119 DLVG-------LDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168
Query: 1190 ESERVVQQALQRLMRK--RTTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSLVEN 1244
+ + +Q+ ++ L ++ +T + V H + +K AD+I+V+++G+I++ T ++ N
Sbjct: 169 ITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 1e-35
Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 26/239 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEFK+VS+ S I + G I +VG SG+GKST+I LI R +P G I
Sbjct: 4 IEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY-----GKDDATMEEITRAAKL 496
L+DG +IK +D+ LR++IG+V Q+P LF T+++NI Y G+ + +E L
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGL 120
Query: 497 SEAMSFISNLPERFETQVGERGIQ-LSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
++ + R ++ LSGG+ QR++I+R + NP +LLLDE TSALD S
Sbjct: 121 NKEYAT--------------RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166
Query: 556 ENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNS 611
++E + ++ + T + + H + R D A + +V+ + +NP +
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQN 225
|
Length = 241 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 1e-35
Identities = 77/254 (30%), Positives = 149/254 (58%), Gaps = 13/254 (5%)
Query: 1016 GTIELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
G+I+ VH Y RP + + + V + + +VG++G+GKS++L+ + R +
Sbjct: 1233 GSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290
Query: 1075 GKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASE---GEVIEAAK 1131
G++M+D D+ + L LR+ ++++ Q P LF+ ++ NI D SE ++ EA +
Sbjct: 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI----DPFSEHNDADLWEALE 1346
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
A+ I P G +V E G S GQ+Q +++ARA+L+ +IL+LDEAT+++DV +
Sbjct: 1347 RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406
Query: 1192 ERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFK 1251
+ ++Q+ ++ + T +++AHRL+TI + D+I V+ SG+++E + L+ + A+F+
Sbjct: 1407 DSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
Query: 1252 LINLQQRQDPQHSQ 1265
++ P ++Q
Sbjct: 1467 MV---HSTGPANAQ 1477
|
Length = 1495 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 2e-35
Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 22/234 (9%)
Query: 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E K++S +P+ V D I G+ + LVG SGSGKST+ I +P SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 441 ILLDGNNIKGLD---LKWLRQQIGLVNQEP--ALFAT-TIRENI-----LYGKDDATMEE 489
I+ DG ++ L K R++I +V Q+P +L TI E I ++GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
L + LPE + +LSGGQ+QR+AI+RA+ NP +L+ DE TS
Sbjct: 122 KEAVLLLLVGV----GLPEEVLNR---YPHELSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 550 ALDAESENSVQEALD--RVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600
ALD + + + L + +G T + + H L + AD +AV+ KIV+ G
Sbjct: 175 ALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-35
Identities = 76/229 (33%), Positives = 142/229 (62%), Gaps = 4/229 (1%)
Query: 1016 GTIELRGVHFSYPSRPEV-VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
G +E R Y R ++ ++ + N+ + G+ + +VG++G+GKS++ + R +
Sbjct: 1283 GRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
Query: 1075 GKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLAN 1134
G++++DG++I ++ L LR I ++ Q+P LF+ S+ N L S+ EV A +LA+
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN-LDPFSQYSDEEVWWALELAH 1399
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
+F+SALP+ + E G LS GQ+Q V +ARA+L+ +IL+LDEAT+A+D+E++ +
Sbjct: 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNL 1459
Query: 1195 VQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243
+Q ++ T + +AHRL+TI + ++ V++ G++ E G S+L++
Sbjct: 1460 IQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 4e-35
Identities = 76/246 (30%), Positives = 135/246 (54%), Gaps = 22/246 (8%)
Query: 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070
+ N I++ V FSYP+ + K+ + ++ G+ +A++G +GSGKST+ ++
Sbjct: 1 IKNKSVMIKVENVSFSYPNSENNAL-KNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59
Query: 1071 DPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYGKDGASEGEVIE 1128
P +G++ +DGI I + NLK +RK I ++ Q P ++ ++I +G E + +
Sbjct: 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL----ENKKVP 115
Query: 1129 AAKLANAHSFISALPEGYSTKVG-----ERGVQ-LSGGQKQRVAIARAVLKNPEILLLDE 1182
K + + + + KVG ++ Q LSGGQKQRVAIA + NPEI++ DE
Sbjct: 116 PKK-------MKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168
Query: 1183 ATSALDVESERVVQQALQRLMRKRT-TII-VAHRLSTIKNADQISVIESGKIIEQGTHSS 1240
+TS LD + +R +++ + L + R T+I + H + AD++ V GK+I QG
Sbjct: 169 STSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKE 228
Query: 1241 LVENED 1246
++ N++
Sbjct: 229 ILNNKE 234
|
Length = 271 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 5e-35
Identities = 78/217 (35%), Positives = 123/217 (56%), Gaps = 13/217 (5%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQQI 460
L I G+I ++G SGSGKST + ++ R EP +G+I +DG NI L R++I
Sbjct: 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 461 GLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
G+V Q+ ALF TI +N G + E R K E + + L E +E + +
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-GLEE-YEHRYPD--- 128
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAH 577
+LSGG +QR+ ++RA+ P ILL+DEA SALD +S+Q+ L ++ + +T V + H
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188
Query: 578 RL-STIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
L IR D I +++ +IV+ G+ +E++ NP + Y
Sbjct: 189 DLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 6e-35
Identities = 76/242 (31%), Positives = 147/242 (60%), Gaps = 10/242 (4%)
Query: 1016 GTIELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
G+I+ V Y RPE+ + + ++ + + +VG++G+GKS++L+ + R +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 1075 GKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASE---GEVIEAAK 1131
G++++DG DI + L LRK + ++ Q P LF+ ++ N+ D +E ++ E+ +
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL----DPFNEHNDADLWESLE 1349
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
A+ I G +V E G S GQ+Q +++ARA+L+ +IL+LDEAT+A+DV +
Sbjct: 1350 RAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
Query: 1192 ERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFK 1251
+ ++Q+ ++ + T +I+AHRL+TI + D+I V+++G+++E T +L+ NE A+ K
Sbjct: 1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSK 1469
Query: 1252 LI 1253
++
Sbjct: 1470 MV 1471
|
Length = 1622 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 6e-35
Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 25/226 (11%)
Query: 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL 1092
VV D +L V G+ ++G SGSGKST++ L+ R +PT G+++VDG DI +L+ L
Sbjct: 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAEL 100
Query: 1093 R----KHIALVQQEPALFA-TSIYENILYGKD--GASEGE----VIEAAKLANAHSFISA 1141
R K I++V Q AL ++ EN+ +G + G + E +EA +L +
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK 160
Query: 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
P +LSGG +QRV +ARA+ +P+ILL+DEA SALD +Q L
Sbjct: 161 YPN-----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE 209
Query: 1202 LMR--KRTTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSLVEN 1244
L K+T + + H L ++ D+I++++ G+I++ GT ++ N
Sbjct: 210 LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 8e-35
Identities = 77/256 (30%), Positives = 133/256 (51%), Gaps = 33/256 (12%)
Query: 382 IEFKDVSFCYPSRPDVAI--------FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
+ +++S Y SR + + D D+ G+ + LVG SGSGKST+ ++
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 434 YEPLSGEILLDGNN--IKGLDLKWLRQQIGLVNQEPALFAT-----TIRENI-----LYG 481
P SG I+ DG + + G +L+ LR++I +V Q+P +++ T+ + + ++G
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILAEPLRIHG 398
Query: 482 KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541
R A+++E + + LP F + +LSGGQ+QR+AI+RA+ P +
Sbjct: 399 GGSGA----ERRARVAELLELVG-LPPEFLDR---YPHELSGGQRQRVAIARALALEPKL 450
Query: 542 LLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598
L+LDE SALD + V L + +G T + ++H L+ +R AD +AV+ +IV+
Sbjct: 451 LILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE 510
Query: 599 TGSHEELISNPNSAYA 614
G E++ NP Y
Sbjct: 511 EGPTEKVFENPQHPYT 526
|
Length = 539 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-34
Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 34/263 (12%)
Query: 382 IEFKDVSFCYPSRPDVA------------IFDKF---------CLDIPAGKIVALVGGSG 420
IE K+V + P A I K LD+ G+I ++G SG
Sbjct: 5 IEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSG 64
Query: 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ----QIGLVNQEPALFA-TTIR 475
SGKST++ L+ R EP GEIL+DG +I L LR+ +I +V Q AL T+
Sbjct: 65 SGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVL 124
Query: 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535
EN+ +G + + + R + EA+ + L E + + +LSGG +QR+ ++RA+
Sbjct: 125 ENVAFGLEVQGVPKAEREERALEALE-LVGL-EGYADK---YPNELSGGMQQRVGLARAL 179
Query: 536 VKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLS-TIRNADVIAVVQ 592
+P ILL+DEA SALD +Q+ L + + +T V + H L +R D IA+++
Sbjct: 180 ANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMK 239
Query: 593 GRKIVKTGSHEELISNPNSAYAA 615
+IV+ G+ EE++ NP + Y
Sbjct: 240 DGEIVQVGTPEEILLNPANDYVR 262
|
Length = 386 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 81/230 (35%), Positives = 122/230 (53%), Gaps = 26/230 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IEL V Y V +L ++ G+ L+G SG GK+T+L LI F PT+G++
Sbjct: 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG-----KDGAS-EGEVIEAA 1130
++DG DI NL ++ + V Q ALF +++ENI +G A + V EA
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
L + + P QLSGGQ+QRVAIARA++ P++LLLDE ALD++
Sbjct: 116 DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 1191 SERVVQQALQRLMRKR--TTIIVAHRLS-TIKNADQISVIESGKIIEQGT 1237
+ +Q L+RL ++ T + V H + +D+I+V+ GKI + GT
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 73/211 (34%), Positives = 122/211 (57%), Gaps = 23/211 (10%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096
K+ +L+V G ++G +GSGKS +L I F P +GK++++G DI NL ++ I
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDI 73
Query: 1097 ALVQQEPALFA-TSIYENILYG------KDGASEGEVIEAAKLANAHSFISALPEGYSTK 1149
+ V Q ALF ++Y+NI YG E +V+E A++ ++ PE
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE----- 128
Query: 1150 VGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK-RTT 1208
LSGG++QRVAIARA++ NP+ILLLDE SALDV ++ +++ L+++ ++ T
Sbjct: 129 ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 1209 II-VAHRLSTIKN-ADQISVIESGKIIEQGT 1237
++ V H AD+++++ +GK+I+ G
Sbjct: 183 VLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 4e-34
Identities = 136/539 (25%), Positives = 257/539 (47%), Gaps = 41/539 (7%)
Query: 112 VAILFSSWIEVSCWMYTGERQAAK-MRMAYLRSMLNQDISLFDTEASTGEVISAITSDII 170
VA+ F++ S W+ + AAK + A L S+L + F T TG VI+ + DI
Sbjct: 964 VAVTFTN----SFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIG 1018
Query: 171 VVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVT---- 226
+ ++ + FM+ + + L F + V ISL +I+PL+ L Y Y
Sbjct: 1019 DIDRNVANLMNMFMNQLWQLLSTFAL-IGTVSTISL--WAIMPLLILFYAAYLYYQSTSR 1075
Query: 227 -IGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAK 285
+ + V +S + A E + + +++A+ D+ K+ +++ N ++ LA
Sbjct: 1076 EVRRLDSVTRSPIYA--QFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFT----LAN 1129
Query: 286 GLGLGSMHCVLFLSWSLLVWYVSV--VVHKHISNGGESFTTMLNVVIAGLSLGQAAPDIT 343
+ L +++W + V+ + F + + ++++ ++
Sbjct: 1130 TSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTL--NITTLLS 1187
Query: 344 AFIRAKAAAYPIFEMIER-----DTMSKASS--KTGRKLDK--LSGHIEFKDVSFCY-PS 393
+R + A +ER D S+A++ + R + G I+F+DV Y P
Sbjct: 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG 1247
Query: 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453
P V F + P+ K V +VG +G+GKS++++ + R E G I++D ++ L
Sbjct: 1248 LPPVLHGLSFFVS-PSEK-VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL 1305
Query: 454 KWLRQQIGLVNQEPALFATTIRENI--LYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511
LR+ + ++ Q P LF+ T+R NI +DA + E A + + I P +
Sbjct: 1306 TDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDV---IDRNPFGLD 1362
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
+V E G S GQ+Q ++++RA+++ IL+LDEAT+++D +++ +Q + T
Sbjct: 1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422
Query: 572 TVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSS 630
+V+AHRL+TI + D I V+ ++++ S +EL+S SA+ +V A+ Q S+
Sbjct: 1423 MLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSN 1481
|
Length = 1495 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 9e-34
Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 23/244 (9%)
Query: 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--- 1071
G I ++ + Y + K NL + + AL+G SG GKST L + R D
Sbjct: 1 MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57
Query: 1072 --PTAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG------KDGA 1121
G+V++DG DI +++ LRK + +V Q+P F SIY+N+ YG KD
Sbjct: 58 SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKK 117
Query: 1122 SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
E++E + L A AL + ++ + + LSGGQ+QR+ IARA+ PE+LL+D
Sbjct: 118 KLDEIVEKS-LKGA-----ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD 171
Query: 1182 EATSALDVESERVVQQALQRLMRKRTTIIVAHRL-STIKNADQISVIESGKIIEQGTHSS 1240
E TSALD S +++ +Q L + T +IV H + + +D+ + +G+I+E G
Sbjct: 172 EPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231
Query: 1241 LVEN 1244
L N
Sbjct: 232 LFTN 235
|
Length = 250 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 1e-33
Identities = 71/215 (33%), Positives = 100/215 (46%), Gaps = 60/215 (27%)
Query: 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442
E +++SF Y R + L + AG+IVALVG +GSGKST++ I +P SGEIL
Sbjct: 1 EIENLSFRYGGRTALDNVS---LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSF 502
+DG +I L L+ LR++IG V Q LS
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ------------------------------LS----- 82
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
GGQ+QR+A++RA++ NP +LLLDE TS LD S + E
Sbjct: 83 --------------------GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 563 LDRVMV-GRTTVVVAHRLSTIRNA-DVIAVVQGRK 595
L + GRT ++V H A D + V++ K
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 127 bits (323), Expect = 1e-33
Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 52/225 (23%)
Query: 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442
E +++S Y R + D L I AG+IV ++G +G+GKST++ + +P SGEIL
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSF 502
LDG ++ L K L ++I V Q AL E+ A L+
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ--AL-------------------ELLGLAHLA----- 91
Query: 503 ISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
+R +LSGG++QR+ ++RA+ + P ILLLDE TS LD E
Sbjct: 92 -------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI---AHQIE 135
Query: 562 ALDRVM-----VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTG 600
L+ + G+T V+V H L+ R AD + +++ +IV G
Sbjct: 136 LLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-33
Identities = 86/247 (34%), Positives = 136/247 (55%), Gaps = 25/247 (10%)
Query: 382 IEFKDVSFCYP-SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
IE K++S +P + + L IPAG+I ++G SG+GKST+I I P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 441 ILLDGNNIKGLD---LKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEI- 490
+L+DG ++ L L+ R+QIG++ Q L ++ T+ +N+ L G A EI
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKA---EIK 118
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
R +L E + +S+ +R+ QLSGGQKQR+AI+RA+ NP +LL DEATSA
Sbjct: 119 ARVTELLE-LVGLSDKADRYPA-------QLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 551 LDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607
LD + S+ E L + +G T V++ H + ++ D +AV+ ++V+ G+ E+ S
Sbjct: 171 LDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230
Query: 608 NPNSAYA 614
+P
Sbjct: 231 HPKHPLT 237
|
Length = 343 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-33
Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 20/230 (8%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454
D LDI +G++VAL+G SG+GKST++ +I P +G I L+G + D+
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLF--DVS 70
Query: 455 WLRQQ---IGLVNQEPALFA-TTIRENILYG--KDDATMEEITRAAKLSEAMSFI--SNL 506
L + +G V Q ALF T+ +NI +G E A++ E + + L
Sbjct: 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL 130
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
+R+ Q LSGGQ+QR+A++RA+ P +LLLDE ALDA+ ++ L ++
Sbjct: 131 ADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 567 M--VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
+G TTV V H + AD + V+ +I + G +E+ +P S +
Sbjct: 184 HDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 4e-33
Identities = 82/243 (33%), Positives = 125/243 (51%), Gaps = 30/243 (12%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S YP+ L I G+ VAL+G SG+GKST++ + EP SG +
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 442 LLDGNNI---KGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDA-----------T 486
L+DG +I KG L+ LR+QIG++ Q+ L ++ EN+L G+
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
EE RA E L ++ + QLSGGQ+QR+AI+RA+++ P ++L DE
Sbjct: 119 KEEKQRALAALER----VGLLDKAYQRAD----QLSGGQQQRVAIARALMQQPKLILADE 170
Query: 547 ATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIR-NAD-VIAVVQGRKIVKTGSH 602
++LD S V + L R+ G T +V H++ R AD ++ + GR IV G
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR-IVFDGPP 229
Query: 603 EEL 605
EL
Sbjct: 230 AEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-33
Identities = 83/251 (33%), Positives = 143/251 (56%), Gaps = 8/251 (3%)
Query: 379 SGHIEFKDVSFCYPSRPDVA-IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
SG I+F+DV Y RP++ + +I + V +VG +G+GKS++++ + R E
Sbjct: 1235 SGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI--LYGKDDATMEEITRAAK 495
G IL+DG +I L LR+ +G++ Q P LF+ T+R N+ +DA + E A
Sbjct: 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAH 1352
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
L + I + +V E G S GQ+Q ++++RA+++ IL+LDEAT+A+D +
Sbjct: 1353 LKDV---IRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ +Q+ + T +++AHRL+TI + D I V+ ++V+ + E L+SN SA++
Sbjct: 1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSK 1469
Query: 616 LVQLQEAASQQ 626
+VQ AA+ Q
Sbjct: 1470 MVQSTGAANAQ 1480
|
Length = 1622 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 4e-33
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 22/214 (10%)
Query: 1036 FKDFNLKVR---AGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI----KRLN 1088
DF LK+ + + G SG+GKST+L I P G ++++G + K++N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 1089 LKSLRKHIALVQQEPALFA-TSIYENILYGKDGASEGEV-IEAAKLANAHSFISALPEGY 1146
L ++ I LV Q+ ALF ++ EN+ +G E I +L +
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-------- 121
Query: 1147 STKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR- 1204
+ R QLSGG+KQRVA+ARA+ PE+LLLDE SALD + L+++ +
Sbjct: 122 -DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180
Query: 1205 -KRTTIIVAHRLSTI-KNADQISVIESGKIIEQG 1236
I V H LS AD+I V+E G++ G
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 7e-33
Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 26/254 (10%)
Query: 382 IEFKDVSFCYPSRPDV-AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+ +++S Y + L+I G+ + +VG SGSGKST+ L+ +P SG
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 441 ILLDGNNI-KGLDLKWLRQQIGLVNQEP--ALFA-TTIRENILYGKDDATMEEI-TRAAK 495
ILLDG + K + + +V Q+P +L T+ + + + R A+
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
L + + LP F + R +LSGGQ+QRIAI+RA++ P +L+LDE TSALD
Sbjct: 124 LLDQV----GLPPSFLDR---RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV-- 174
Query: 556 ENSVQ-EALDR-VMVGR----TTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
SVQ + L+ + + + T + ++H L+ + + D IAV+ +IV+ G EEL+S+
Sbjct: 175 --SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
Query: 609 PNSAYAALVQLQEA 622
P+ Y L EA
Sbjct: 233 PSHPYTRE--LLEA 244
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 7e-33
Identities = 77/211 (36%), Positives = 110/211 (52%), Gaps = 40/211 (18%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI--KGLDLKWLRQQIGL 462
L + G++V ++G SGSGKST++ I EP SG I++DG + ++ LRQ++G+
Sbjct: 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80
Query: 463 VNQEPALFA-TTIRENILYG--------KDDAT---MEEITRAAKLSEAMSFISNLPERF 510
V Q+ LF T+ ENI K +A +E + + +A ++ +
Sbjct: 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA------ 134
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-- 568
QLSGGQ+QR+AI+RA+ NP ++L DE TSALD E V E LD VM
Sbjct: 135 ---------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE---LVGEVLD-VMKDL 181
Query: 569 ---GRTTVVVAHRLSTIRN-AD-VIAVVQGR 594
G T VVV H + R AD VI + GR
Sbjct: 182 AEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 8e-33
Identities = 70/252 (27%), Positives = 124/252 (49%), Gaps = 37/252 (14%)
Query: 1018 IELRGVHFSYPSRPEVV-IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP---- 1072
+E+ + + + V +D + +V G+ + +VG+SGSGKST+ ++
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1073 TAGKVMVDGIDIKRLNLKSLR----KHIALVQQEP-ALF--ATSIYENI-----LYGKDG 1120
T+G+V++DG D+ L+ + +R K IA++ Q+P +I + I L+GK
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 1121 ASEG-----EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNP 1175
+E E++E L + P QLSGG +QRV IA A+ P
Sbjct: 126 RAEARKRAVELLEQVGLPDPER-RDRYPH-----------QLSGGMRQRVMIAMALALKP 173
Query: 1176 EILLLDEATSALDVESERVVQQALQRLMRKRTT--IIVAHRLSTIKN-ADQISVIESGKI 1232
++L+ DE T+ALDV ++ + L+ L R+ + + H L + AD++ V+ G+I
Sbjct: 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233
Query: 1233 IEQGTHSSLVEN 1244
+E G ++ N
Sbjct: 234 VETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 8e-33
Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 25/228 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I V +YP E +D + + G+ + L G SG+GKST+L LI PT GK+
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1078 MVDGIDIKRLNLKS---LRKHIALVQQEPALFAT-SIYENILY-----GKDGASEGE-VI 1127
+V+G D+ RL + LR+ I +V Q+ L ++YEN+ GK V
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
E L ALP QLSGG++QRVAIARA++ P +LL DE T L
Sbjct: 120 EVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 1188 DVESERVVQQALQRLMRKRTTIIVA-HRLSTIKNADQ-ISVIESGKII 1233
D + + + + + R TT+++A H L + + +E G+++
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 9e-33
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 29/223 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E + VS + V + + L + G+ VA++G SG GKST++ LI +P SGE+
Sbjct: 4 LEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
LLDG + G IG V QE AL T+ +N+ G + + + E +
Sbjct: 61 LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 501 SFISNLPERFETQVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
VG G QLSGG +QR+AI+RA+ P +LLLDE ALDA
Sbjct: 116 -----------ELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 555 SENSVQEALDRVM--VGRTTVVVAHRLS-TIRNADVIAVVQGR 594
+ +Q+ L R+ +T ++V H + + AD + V+ R
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 72/238 (30%), Positives = 123/238 (51%), Gaps = 20/238 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+ G+ F Y +R + D + VR G+ +AL+G +G+GKST+ SL+ R Y G++
Sbjct: 2 LEVAGLSFRYGARRAL---DDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPAL-FATSIYENILYGKD--GASEGEVIEAAKLAN 1134
V G D++R +L + +V Q+P L S+ +N+ Y G S E
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAE--------- 108
Query: 1135 AHSFISALPE--GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE 1192
A + I+ L G + + ++ +L+GG ++RV IARA+L P +LLLDE T LD S
Sbjct: 109 ARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR 168
Query: 1193 RVVQQALQRLMRKRTTIIV--AHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGA 1248
+ ++ L R + ++ H + I+ D++ V+ G+++ G + L GA
Sbjct: 169 AAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGA 226
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 15/217 (6%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L++ G ++G +GSGKS ++ I F +P SG+ILL+G +I +L ++ I V
Sbjct: 20 LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVP 77
Query: 465 QEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSF--ISNLPERFETQVGERGIQL 521
Q ALF T+ +NI YG +++ K+ E I +L R L
Sbjct: 78 QNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-------L 130
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRL 579
SGG++QR+AI+RA+V NP ILLLDE SALD ++ ++E L ++ G T + V H
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190
Query: 580 STIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
AD +A++ K+++ G EE+ P + + A
Sbjct: 191 EEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVA 227
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-32
Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 1018 IELRGVHFSYPSR------PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
+E++ + +P V + ++ G+++ LVG+SG GKST+ LIL +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1072 PTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAK 1131
PT+G+++ +G DI +L+ + R+ + E++E
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVL---------------------------ELLEKVG 97
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
L E LSGGQ+QR+ IARA+ NP++++ DE SALDV
Sbjct: 98 LPEEF---------LYRYPHE----LSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144
Query: 1192 ERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
+ + L+ L + T + ++H LS ++ +D+I+V+ GKI+E G + N
Sbjct: 145 QAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-32
Identities = 79/258 (30%), Positives = 109/258 (42%), Gaps = 70/258 (27%)
Query: 370 KTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL 429
G+ K VSF I G+ + LVG SG GKST+ L
Sbjct: 15 PVGKGFGKKRYVKAVDGVSF----------------SIKEGETLGLVGESGCGKSTLGRL 58
Query: 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489
I EP SGEIL +G +I L + R+++ E
Sbjct: 59 ILGLEEPTSGEILFEGKDITKLSKEERRERV---------------------------LE 91
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
+ L E F+ P +LSGGQ+QRI I+RA+ NP +++ DE S
Sbjct: 92 LLEKVGLPE--EFLYRYP-----------HELSGGQRQRIGIARALALNPKLIVADEPVS 138
Query: 550 ALDAESENSVQ-------EALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601
ALD SVQ + L + G T + ++H LS +R +D IAV+ KIV+ G
Sbjct: 139 ALDV----SVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193
Query: 602 HEELISNPNSAY-AALVQ 618
EE+ SNP Y AL+
Sbjct: 194 TEEVFSNPLHPYTKALLS 211
|
Length = 268 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-32
Identities = 78/212 (36%), Positives = 111/212 (52%), Gaps = 20/212 (9%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA-----GKVMVDGIDIKR--LNL 1089
K +++ K AL+G SGSGKST L + R D G+++ GIDI R +N+
Sbjct: 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96
Query: 1090 KSLRKHIALVQQEPALFATSIYENILYG------KDGASEGEVIEAAKLANAHSFISALP 1143
+RKHI +V Q P FA SIYENI + KD E++E + L A AL
Sbjct: 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETS-LKQA-----ALW 150
Query: 1144 EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM 1203
+ + + + LSGGQ+QR+ IARA+ P+ILL+DE SALD S +++ + L
Sbjct: 151 DQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK 210
Query: 1204 RKRTTIIVAHRLSTIKNA-DQISVIESGKIIE 1234
+ T IIV H + A D + G +IE
Sbjct: 211 KNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 79/242 (32%), Positives = 126/242 (52%), Gaps = 22/242 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE ++VS + + D LDIP+G++VAL+G SGSGK+T++ LI P SG I
Sbjct: 3 IEVRNVSKRFGDFVAL---DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYG----KDDATMEEITRAAKL 496
L G + + ++ + +G V Q ALF T+ +N+ +G E AK+
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 497 SEAMSFI--SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
E + + L +R+ Q LSGGQ+QR+A++RA+ P +LLLDE ALDA+
Sbjct: 118 HELLKLVQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 555 SENSVQEALDRVM--VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
++ L R+ + TTV V H + AD + V+ +I + G+ +E+ +P S
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPAS 230
Query: 612 AY 613
+
Sbjct: 231 PF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 80/243 (32%), Positives = 136/243 (55%), Gaps = 30/243 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+ + YP+ K+ NL + G+ +A++G SG+GKST+L I R +P++G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1078 MVDGIDIKRLN---LKSLRKHIALVQQEPALFA-TSIYENILYGKDGA-----------S 1122
+++G DI +L L+ LR+ I ++ Q L ++ EN+L+G+ G S
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1123 EGEVIEAAKLANAHSFISALPE-GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
E + A +SAL G + K +R QLSGGQ+QRVAIARA+ + P+++L D
Sbjct: 120 EEDKERA---------LSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170
Query: 1182 EATSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGTH 1238
E ++LD ++ + V L+R+ ++ T II H++ K AD+I +++G+I+ G
Sbjct: 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230
Query: 1239 SSL 1241
S L
Sbjct: 231 SEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-32
Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 28/230 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+EL V + V D NL + G+ + L+G SG GK+T L +I +PT+G++
Sbjct: 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG-------KDGASEGEVIEA 1129
+ G D+ L K + IA+V Q AL+ ++Y+NI +G KD E V E
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER-VREV 114
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
A+L I L + QLSGGQ+QRVA+ RA+++ P++ L+DE S LD
Sbjct: 115 AELLQ----IEHLLDRKPK-------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA 163
Query: 1190 ESERVVQQALQRLMR--KRTTIIVAH-RLSTIKNADQISVIESGKIIEQG 1236
+ ++ L+RL + TTI V H ++ + AD+I+V+ G+I + G
Sbjct: 164 KLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-32
Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 15/192 (7%)
Query: 1027 YPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG--IDI 1084
YP PEV+ K N G+ +AL+G +G+GKST+L + P +G V++DG +D
Sbjct: 1 YPGGPEVL--KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1085 KRLNLKSLRKHIALVQQEP--ALFATSIYENILYG--KDGASEGEVIEAAKLANAHSFIS 1140
R L R+ + LV Q+P LFA + +++ +G G SE EV ++ A + +
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEV--ERRVREALTAVG 116
Query: 1141 ALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQ 1200
A G + LSGG+K+RVAIA AV P++LLLDE T+ LD + L+
Sbjct: 117 AS--GLRERPTH---CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 1201 RLMRKRTTIIVA 1212
RL + T++++
Sbjct: 172 RLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 5e-32
Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 15/224 (6%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
D L++P G +VAL+G SGSGKST++ +I +P SG I L+G + + +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFI--SNLPERFET 512
++IG V Q ALF T+R+NI +G + + A++ E + + L +R+
Sbjct: 71 -DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGR 570
Q LSGGQ+QR+A++RA+ P +LLLDE ALDA+ ++ L ++ V
Sbjct: 130 Q-------LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 571 TTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
TTV V H + AD I V+ KI + GS +E+ +P + +
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 5e-32
Identities = 70/209 (33%), Positives = 111/209 (53%), Gaps = 19/209 (9%)
Query: 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TT 473
L+G SG GK+T++ L+ F +P SG I+LDG ++ + + I +V Q ALF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 474 IRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG----IQLSGGQKQRI 529
+ EN+ +G + ++ EA+ + Q+ E QLSGGQ+QR+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLV---------QLEEFADRKPHQLSGGQQQRV 109
Query: 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS-TIRNAD 586
A++RA+V P ILLLDE SALD + + +Q L + +G T V V H + +D
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169
Query: 587 VIAVVQGRKIVKTGSHEELISNPNSAYAA 615
IA+++ KI + G+ EE+ P + + A
Sbjct: 170 RIAIMRKGKIAQIGTPEEIYEEPANLFVA 198
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-32
Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 18/242 (7%)
Query: 1017 TIELRGVHFSY-PSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
+I++ + Y P E + N+++ G+ + L+G +GSGKST++ + PT+
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 1075 GKVMVDGIDI--KRLNLKSLRKHIALVQQEP--ALFATSIYENILYGKD--GASEGEVIE 1128
GK+++DG+DI K++ L +RK + LV Q P LF +I ++I +G G SE E+
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIEN 121
Query: 1129 AAKLANAHSFISALP-EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
K A I L E Y K +LSGGQK+RVAIA V P+IL+LDE T+ L
Sbjct: 122 RVKRAMN---IVGLDYEDYKDK---SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175
Query: 1188 DVESERVVQQALQRLMRKR--TTIIVAHRLSTI-KNADQISVIESGKIIEQGTHSSLVEN 1244
D + + ++ L ++ T I+V+H + + K AD+I V+ GK QGT + +
Sbjct: 176 DPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
Query: 1245 ED 1246
+
Sbjct: 236 VE 237
|
Length = 287 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 6e-32
Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 20/227 (8%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDI-- 1084
E K+ +K+ + A++G SG GK+T+L I R D GK+ G DI
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 1085 KRLNLKSLRKHIALVQQEPALFATSIYENILYG------KDGASEGEVIEAAKLANAHSF 1138
+L++ RK + +V Q+P F SIY+N+ +G K ++E + L A
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEES-LKKA--- 130
Query: 1139 ISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQA 1198
AL + +++ + G +LSGGQ+QR+ IARA+ PE++LLDE TSALD + + +++
Sbjct: 131 --ALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188
Query: 1199 LQRLMRKRTTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSLVEN 1244
L+ L T +IV H + I+ AD I+ + G++IE G +VE
Sbjct: 189 LEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235
|
Length = 250 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 8e-32
Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 13/279 (4%)
Query: 700 CGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEH 759
+ I+AGA +F L + + +D E + L + V+ +
Sbjct: 3 IAILLLILAGATALVFPL-LLGRFLDSLID--GNGDERSSLISLAILLIAVGVLQGLLLQ 59
Query: 760 LSFGIMGERLTLRVREKMFSAILSNEIGWFDEMD--NSSSILASRLESDATLLRTIVVDR 817
SF +GERL R+R+++F A+L +G NS L SRL +D + +R + D+
Sbjct: 60 GSF-YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDK 118
Query: 818 STILIQNFGLVTASFVIAFILNWRITLVVVATYPLII--SGHISEKLFFQGYGGNLSKAY 875
+ Q+ V F++ F W++TLV++A PL+I S +++K + KAY
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKK--LRKLNRKEQKAY 176
Query: 876 LKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIF 935
KA +A E++S IRTV AF E+ LE Y + L + K + AG+ +GI+Q +
Sbjct: 177 AKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISY 236
Query: 936 SSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMG 974
SY LALW+G+ L+ ++ SV F L + G
Sbjct: 237 LSYALALWFGAYLV---ISGGLSVGTVFAFLSLGLQLSG 272
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 9e-32
Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 29/234 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I + V + + D +L +++G+ +AL+G SG+GKST+L +I P AG++
Sbjct: 3 IRINNVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 1078 MVDGIDIKRL-NLKSLRKHIALVQQEPALFA-TSIYENILYG----KDGASEGE----VI 1127
++G + + NL + + V Q ALF ++ +NI +G K+ SE E V
Sbjct: 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
E +L P QLSGGQ+QRVA+ARA+ P++LLLDE AL
Sbjct: 120 ELLRLVQLEGLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 1188 DVESERVVQQALQRLMRKR---TTIIVAHRLS-TIKNADQISVIESGKIIEQGT 1237
D + + +++ L++L R TT+ V H ++ AD++ V+ G+I + G
Sbjct: 169 DAKVRKELRRWLRKL-HDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-31
Identities = 78/245 (31%), Positives = 127/245 (51%), Gaps = 33/245 (13%)
Query: 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070
L++ + +E+R ++ Y + + D ++++ + A +G SG GKST+L R
Sbjct: 19 LSDEQTALEVRNLNLFYGDKQAL---FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMN 75
Query: 1071 D-----PTAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG------ 1117
D G++ +DG +I K++++ LR+ + +V Q P F SIYEN++YG
Sbjct: 76 DLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGI 135
Query: 1118 KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177
+ E +E + L A AL + ++ E LSGGQ+QR+ IARA+ PE+
Sbjct: 136 NNRRVLDEAVERS-LRGA-----ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEV 189
Query: 1178 LLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH------RLSTIKNADQISVIESGK 1231
LLLDE TSALD S +++ + L K T +IV H R+S D + + GK
Sbjct: 190 LLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVS-----DYTAFMYMGK 244
Query: 1232 IIEQG 1236
++E G
Sbjct: 245 LVEYG 249
|
Length = 272 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 26/215 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE V +YP D +L +R G+ + L G SG+GK+T+L L+ P+ G+V
Sbjct: 2 IEFHNVSKAYPGGVA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1078 MVDGIDIKRLN---LKSLRKHIALVQQEPALFAT-SIYENI-----LYGKDGASEGEVIE 1128
+ G D+ RL L LR+ I +V Q+ L ++YEN+ + GK +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1129 AA--KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
AA ++ H A PE QLSGG++QRVAIARA++ +P +LL DE T
Sbjct: 120 AALRQVGLEHK-ADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 1187 LDVESERVVQQALQRLMRKRTTIIVA-HRLSTIKN 1220
LD + + L+RL ++ TT+IVA H LS +
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 2e-31
Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 23/244 (9%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---- 435
G I KD+ Y D K LDI ++ AL+G SG GKST + + R +
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 436 -PLSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDAT 486
+ GE+LLDG +I +D+ LR+++G+V Q+P F +I +N+ YG KD
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
++EI + L A L + + ++ + + LSGGQ+QR+ I+RA+ P +LL+DE
Sbjct: 119 LDEIVEKS-LKGAA-----LWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172
Query: 547 ATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEEL 605
TSALD S ++E + + T V+V H + R +D A +IV+ G +L
Sbjct: 173 PTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
Query: 606 ISNP 609
+NP
Sbjct: 233 FTNP 236
|
Length = 250 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 76/239 (31%), Positives = 114/239 (47%), Gaps = 33/239 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I F++VS YP + IP G+ V L G SG+GKST++ LI P G+I
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 442 LLDG---NNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILY-----GKDDATMEEITR 492
L++G + +KG ++ +LR+QIG+V Q+ L T+ EN+ GK +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 493 AA----KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
L LP QLSGG++QR+AI+RAIV P++LL DE T
Sbjct: 120 EVLDLVGLKHKAR---ALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPT 165
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVA-HRLSTI--RNADVIAVVQGRKIVKTGSHEE 604
LD + + + + TTV++A H L + V+A+ GR +V+ S
Sbjct: 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGR-LVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 2e-31
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 23/226 (10%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDI--KRL 1087
I D NL + + A +G SG GKST L R D G++ +DGID+
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1088 NLKSLRKHIALVQQEPALFATSIYENILYG-------KDGASEGEVIEAAKLANAHSFIS 1140
N+ LR + +V Q+P F SIY+N+ YG K+ E++E S S
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVE-------KSLTS 132
Query: 1141 -ALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL 1199
L E ++ + +LSGGQ+QR+ IARA+ P +LL+DE SALD + V++ +
Sbjct: 133 VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI 192
Query: 1200 QRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
Q L + T I+V H + K +D+++ +SG+I+E T + +N
Sbjct: 193 QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238
|
Length = 251 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 58/227 (25%), Positives = 111/227 (48%), Gaps = 24/227 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
++L + Y + +L + G L+G +G+GK+T++ ++ P++G +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYE-----NILYG-KDGASEGEVIEAA 1130
+DG D+ + + LR+ I + QE ++ ++ E L G + V E
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
+L N L + K+G LSGG ++RV IA+A++ +P IL++DE T+ LD E
Sbjct: 116 ELVN-------LGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 1191 SERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236
+ L L R I+ H + +++ +Q++V+ GK++ +G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-31
Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 28/243 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ELRG+ S+ V +L VR G+ AL+G++G+GKST++ ++ Y P +G++
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1078 MVDGIDIKRLNLK-SLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVI------EA 1129
++DG + + + +L IA V QE +L S+ ENI G++ +I
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
A+ A + P+ T VG+ LS Q+Q V IARA+ + +L+LDE T+AL V
Sbjct: 126 ARELLARLGLDIDPD---TLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTV 178
Query: 1190 -ESERVVQQALQRLMRKRTTII-VAHRLSTIK-NADQISVIESGKIIEQG------THSS 1240
E+ER+ ++RL + II ++HRL + AD+I+V+ G+++ +
Sbjct: 179 KETERLFDL-IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDE 237
Query: 1241 LVE 1243
LV
Sbjct: 238 LVR 240
|
Length = 500 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 18/222 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF +V+ YP A D + I AG+ V LVG SG+GKST++ LI + P SG I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 442 LLDG---NNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLS 497
++G ++++G + +LR++IG+V Q+ L + EN+ + +E +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF-----ALEVTGVPPR-- 111
Query: 498 EAMSFISNLPERFETQVGERGI--QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
E + E R + +LSGG++QR+AI+RAIV +P+IL+ DE T LD ++
Sbjct: 112 EIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNA---DVIAVVQGR 594
+ L ++ TTVVVA + + VIA+ +G+
Sbjct: 172 TWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 23/203 (11%)
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS-- 1091
VI D NL + GK A++G+SGSGKST+L++I +G+V ++G + LN K
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 1092 --LRKHIALVQQEPALFAT-SIYENI----LYGKDGASEGE--VIEAAKLANAHSFISAL 1142
R+ + + Q AL ++ EN+ Y K E EA + + +
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-- 129
Query: 1143 PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRL 1202
K+ E LSGG++QRVA+ARA+LK P ++L DE T +LD ++ V L L
Sbjct: 130 -----QKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL 180
Query: 1203 MRK-RTTIIVAHRLSTIKNADQI 1224
+ +T IIV H K AD++
Sbjct: 181 NDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-31
Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 23/261 (8%)
Query: 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSG 422
T+ L +E ++++ Y A+FD + IP ++ A +G SG G
Sbjct: 7 TLMALPLLDVLNLSDEQTALEVRNLNLFYGD--KQALFD-ISMRIPKNRVTAFIGPSGCG 63
Query: 423 KSTVISLIERFYEPL-----SGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIR 475
KST++ R + + GEI LDG NI K +D+ LR+++G+V Q P F +I
Sbjct: 64 KSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIY 123
Query: 476 ENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529
EN++YG + ++E + A L + + ++ E LSGGQ+QR+
Sbjct: 124 ENVVYGLRLQGINNRRVLDEAVERSLRGAA------LWDEVKDRLHENAFGLSGGQQQRL 177
Query: 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVI 588
I+RAI P +LLLDE TSALD S ++E + + T V+V H + R +D
Sbjct: 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYT 237
Query: 589 AVVQGRKIVKTGSHEELISNP 609
A + K+V+ G + L ++P
Sbjct: 238 AFMYMGKLVEYGDTDTLFTSP 258
|
Length = 272 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 5e-31
Identities = 79/213 (37%), Positives = 117/213 (54%), Gaps = 7/213 (3%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA---GKVMVDGIDIKRLNLKSLRK 1094
D N+++ K AL+G SG GKST L R D A G V ++G D+K ++ +LRK
Sbjct: 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79
Query: 1095 HIALVQQEPALFATSIYENILYGKD--GASEGEVIEAAKLANAHSFISALPEGYSTKVGE 1152
++ +V Q+P +F SIYENI Y G + + E A + + + L E K+ +
Sbjct: 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKV-GLFEEVKDKLKQ 138
Query: 1153 RGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVA 1212
+ LSGGQ+QR+ IARA+ P++LLLDE TSALD S V+++ L+ L + I+V
Sbjct: 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVT 198
Query: 1213 HRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
H + K AD + G++IE G EN
Sbjct: 199 HNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 6e-31
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 48/218 (22%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S Y + D L + G+I L+G +G+GK+T+I +I +P SGEI
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAM 500
+ G +IK + + ++++IG + +EP+L+ T+REN
Sbjct: 58 KVLGKDIK-KEPEEVKRRIGYLPEEPSLYENLTVREN----------------------- 93
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
++LSGG KQR+A+++A++ +P +L+LDE TS LD ES
Sbjct: 94 ------------------LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 561 EALDRVMVGRTTVVVA-HRLSTIRN-ADVIAVVQGRKI 596
E L + T++++ H L D +A++ +I
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 8e-31
Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 13/219 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE V +YP N+ + AG+ + LVG SG+GKST+L LI + PT+G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1078 MVDGIDIKRLNLKS---LRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLA 1133
V+G D+ L ++ LR+ I +V Q+ L ++YEN+ + EV
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL------EVTGVPPRE 112
Query: 1134 NAHSFISALPE-GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE 1192
+AL G S K +LSGG++QRVAIARA++ +P IL+ DE T LD ++
Sbjct: 113 IRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172
Query: 1193 RVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGK 1231
+ L+++ + TT++VA + + + VI +
Sbjct: 173 WEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALER 211
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-31
Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 23/236 (9%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+ ++ Y + I +L V G+ +AL+G++G+GK+T+L I+ P +G +
Sbjct: 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57
Query: 1078 MVDGIDIKRLNL-KSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANA 1135
DG DI L + R I V + +F ++ EN+L G + A+L
Sbjct: 58 RFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KARLERV 115
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVV 1195
+ L E G LSGG++Q +AIARA++ P++LLLDE + L + ++V
Sbjct: 116 YELFPRLKERRKQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIV 168
Query: 1196 QQ---ALQRLMRKRTTIIV----AHRLSTIKNADQISVIESGKIIEQGTHSSLVEN 1244
++ A++ L + TI++ A I AD+ V+E G+++ +GT + L+ +
Sbjct: 169 EEIFEAIRELRDEGVTILLVEQNARFALEI--ADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 81/245 (33%), Positives = 124/245 (50%), Gaps = 34/245 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE K++S YP L+I G++VA++G SG+GKST++ + +P SGEI
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 442 LLDGNNIKGL---DLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLS 497
L +G I L +L+ LR+ IG++ Q+ L ++ EN+L G+ T S
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT----------S 111
Query: 498 EAMSFISNLPERFE-------TQVG------ERGIQLSGGQKQRIAISRAIVKNPSILLL 544
S + + +VG +R LSGGQ+QR+AI+RA+V+ P I+L
Sbjct: 112 TWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA 171
Query: 545 DEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-AD-VIAVVQGRKIVKTG 600
DE ++LD ES V + L + G T +V H++ + AD +I + GR IV G
Sbjct: 172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR-IVFDG 230
Query: 601 SHEEL 605
EL
Sbjct: 231 PASEL 235
|
Length = 258 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 34/227 (14%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNI--KGLDLKWLR 457
LDI ++ A +G SG GKST++ R YE P GEILLDG NI D+ LR
Sbjct: 34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93
Query: 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE------ 511
++G+V Q+P F +I +NI +G +L E +S + + ER E
Sbjct: 94 AKVGMVFQKPTPFPMSIYDNIAFG------------VRLFEKLS-RAEMDERVEWALTKA 140
Query: 512 -------TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD 564
++ + G LSGGQ+QR+ I+R I P +LLLDE SALD S ++E +
Sbjct: 141 ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT 200
Query: 565 RVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNPN 610
+ T V+V H + R +D A + ++++ G+ + + + P
Sbjct: 201 ELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPA 247
|
Length = 260 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-30
Identities = 74/291 (25%), Positives = 124/291 (42%), Gaps = 44/291 (15%)
Query: 405 LDIPAGKIVALVGGSGSGKST----VISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ-- 458
++ G+I+ +VG SGSGKST ++ L+ SGE++LDG ++ GL + +R+
Sbjct: 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLR 89
Query: 459 --QIGLVNQEP-ALF------------ATTIRENILYGKDDATMEEITRAAKLSEAMSFI 503
+I ++ Q+P A + + E+ L +
Sbjct: 90 GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER-R 148
Query: 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
P QLSGG +QR+ I+ A+ P +L+ DE T+ALD ++ + + L
Sbjct: 149 DRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLL 197
Query: 564 DRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY-----AA 615
+ G + + H L + AD + V+ +IV+TG EE++SNP Y AA
Sbjct: 198 KDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAA 257
Query: 616 LVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVL 666
+ +L + + LS+ R LS S F E+ V
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSV---RNLSKRYGSRKGLFVRERGEVK 305
|
Length = 539 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-30
Identities = 74/230 (32%), Positives = 133/230 (57%), Gaps = 4/230 (1%)
Query: 379 SGHIEFKDVSFCYPSRPDV-AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
G +EF++ +C R D+ + + I G+ V +VG +G+GKS++ + R E
Sbjct: 1282 RGRVEFRN--YCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLS 497
GEI++DG NI + L LR +I ++ Q+P LF+ ++R N L + EE+ A +L+
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN-LDPFSQYSDEEVWWALELA 1398
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+F+S LP++ + + E G LS GQ+Q + ++RA+++ IL+LDEAT+A+D E++N
Sbjct: 1399 HLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458
Query: 558 SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
+Q + T + +AHRL+TI + + V+ ++ + G+ L+
Sbjct: 1459 LIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-30
Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 23/203 (11%)
Query: 1051 LVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFA-TS 1109
L+G SG GK+T+L L+ F P +G +M+DG D+ N+ +HI +V Q ALF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 1110 IYENILYG----KDGASE--GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163
+ EN+ +G K +E V+EA +L F P QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107
Query: 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTIIVAHRLS-TIKN 1220
RVA+ARA++ P+ILLLDE SALD + +Q L+ + + T + V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1221 ADQISVIESGKIIEQGTHSSLVE 1243
+D+I+++ GKI + GT + E
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYE 190
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 19/219 (8%)
Query: 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG-LDLKWLR 457
L IPA ++ AL+G SG GKST++ + R + ++G++ +DG +I G +D+ LR
Sbjct: 23 NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
++G+V Q+P F +I EN+ YG KD ++E+ + A L + +
Sbjct: 83 IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA------LWDEVK 136
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
++ LSGGQ+QR+ I+R I P ++L+DE TSALD + + ++E ++ + T
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT 196
Query: 572 TVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
V+V H + R +D A ++V+ + + SNP
Sbjct: 197 IVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235
|
Length = 249 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 34/227 (14%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078
+ + FSY E++ D +L + AG+ +AL G++G+GK+T+ ++ ++G ++
Sbjct: 1 RIENISFSYKKGTEIL--DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 1079 VDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYGKDGASEG-EVIEA------ 1129
++G K + K RK I V Q+ LF S+ E +L G G E E
Sbjct: 59 LNG---KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 1130 -AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
L H LSGGQKQR+AIA A+L ++L+ DE TS LD
Sbjct: 116 LYALKERHPLS-----------------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
Query: 1189 VESERVVQQALQRLMRKRTTIIVA-HRLSTIKN-ADQISVIESGKII 1233
++ V + ++ L + +IV H + D++ ++ +G I+
Sbjct: 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 23/243 (9%)
Query: 1008 GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL 1067
+ I++R ++F Y + K+ NL + + A +G SG GKST+L
Sbjct: 4 MSMVATAPSKIQVRNLNFYYGKFHAL---KNINLDIAKNQVTAFIGPSGCGKSTLLRTFN 60
Query: 1068 RFYD--P---TAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG--- 1117
R Y+ P G++++DG +I + ++ LR + +V Q+P F SIY+NI +G
Sbjct: 61 RMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRL 120
Query: 1118 --KDGASE-GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174
K +E E +E A L A AL K+ + G LSGGQ+QR+ IAR +
Sbjct: 121 FEKLSRAEMDERVEWA-LTKA-----ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIR 174
Query: 1175 PEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRL-STIKNADQISVIESGKII 1233
PE+LLLDE SALD S +++ + L + T +IV H + + +D + + G++I
Sbjct: 175 PEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234
Query: 1234 EQG 1236
E G
Sbjct: 235 EFG 237
|
Length = 260 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 4e-30
Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 25/222 (11%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL---- 1092
D +L + G+ ++G SGSGKST + ++ R +PTAG++ +DG +I + + L
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVR 69
Query: 1093 RKHIALVQQEPALFA-TSIYENILYGKD--GASEGE----VIEAAKLANAHSFISALPEG 1145
RK I +V Q+ ALF +I +N G + G E E +E KL + P+
Sbjct: 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD- 128
Query: 1146 YSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK 1205
+LSGG +QRV +ARA+ P+ILL+DEA SALD +Q L++L
Sbjct: 129 ----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 1206 --RTTIIVAHRL-STIKNADQISVIESGKIIEQGTHSSLVEN 1244
+T + + H L I+ D+I ++++G+I++ GT ++ N
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-30
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 25/241 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF---YDPTA 1074
+E R + +SYP E + K N K G+ +AL+G +G+GKST L L F PT+
Sbjct: 2 LETRDLKYSYPDGTEAL--KGINFKAEKGEMVALLGPNGAGKST---LFLHFNGILKPTS 56
Query: 1075 GKVMVDGIDIKRLNLKSL---RKHIALVQQEP--ALFATSIYENILYG--KDGASEGEVI 1127
G+V++ G IK KSL RK + +V Q P LFA ++ E++ +G G S+ EV
Sbjct: 57 GEVLIKGEPIKYDK-KSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVE 115
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
+ K A + EG+ K LSGGQK+RVAIA + PEI++LDE TS L
Sbjct: 116 KRVKEALKAVGM----EGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168
Query: 1188 DVESERVVQQALQRLMRKRTTIIVA-HRLSTI-KNADQISVIESGKIIEQGTHSSLVENE 1245
D + + L L ++ TII++ H + + AD++ V+ GKII++GT + +
Sbjct: 169 DPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
Query: 1246 D 1246
+
Sbjct: 229 E 229
|
Length = 275 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 4e-30
Identities = 76/247 (30%), Positives = 128/247 (51%), Gaps = 30/247 (12%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---- 437
IE +D++ Y D D +DIP ++ A++G SG GKST + I R + +
Sbjct: 40 IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96
Query: 438 -SGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD--------DAT 486
GE+ G N+ +D LR++IG+V Q+P F +I +N+ YG D
Sbjct: 97 VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
+EE R A L + + + Q+ G+ LSGGQ+QR+ I+RAI +P ++L+DE
Sbjct: 157 VEESLRRAALWDEV----------KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE 206
Query: 547 ATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAV-VQGRKIVKTGSHEE 604
SALD + + +++ ++ + T V+V H + R +D AV + G ++V+ ++
Sbjct: 207 PASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266
Query: 605 LISNPNS 611
+ NP S
Sbjct: 267 IFENPES 273
|
Length = 285 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-30
Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 19/222 (8%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG-----KVMVDGIDIKR-LNL 1089
K NL + A + AL+G SG GKST+L + R D G K+ +DG DI +++
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 1090 KSLRKHIALVQQEPALFATSIYENILYG------KDGASEGEVIEAAKLANAHSFISALP 1143
LR + +V Q+P F SIYEN+ YG KD EV+E + L A AL
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS-LRGA-----ALW 132
Query: 1144 EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM 1203
+ ++ LSGGQ+QR+ IAR + P+++L+DE TSALD + +++ ++ L
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 1204 RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
+ T +IV H + + +D+ + G+++E + N
Sbjct: 193 KNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 6e-30
Identities = 76/243 (31%), Positives = 138/243 (56%), Gaps = 6/243 (2%)
Query: 378 LSGHIEFKDVSFCYPS--RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435
L G I+ D+ Y + +P + + I G+ V + G +GSGKS++ R +
Sbjct: 16 LGGEIKIHDLCVRYENNLKPVLKHVKAY---IKPGQKVGICGRTGSGKSSLSLAFFRMVD 72
Query: 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAK 495
G+I++DG +I L L LR ++ ++ Q+P LF+ +IR N L + T + + A +
Sbjct: 73 IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALE 131
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+++ + + +LP + V E G S GQ+Q ++RA V+ SIL++DEAT+++D +
Sbjct: 132 IAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
EN +Q+ + RT V +AHR+STI +AD++ V+ +V+ + E L++ + +A+
Sbjct: 192 ENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFAS 251
Query: 616 LVQ 618
LV+
Sbjct: 252 LVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-30
Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 24/262 (9%)
Query: 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSG 422
+K + +DVS Y + A+FD LDIP + A +G SG G
Sbjct: 1 YEMADEKAADKKATATEIKMRARDVSVFYGEKQ--ALFD-VDLDIPEKTVTAFIGPSGCG 57
Query: 423 KSTVISLIERFYEPL-----SGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIR 475
KST + + R + + +G+I LDG +I LD+ LR ++G+V Q+P F +I
Sbjct: 58 KSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIY 117
Query: 476 ENILYG-------KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528
EN+ YG + A ++EI + L +A L E + ++ E G LSGGQ+QR
Sbjct: 118 ENVAYGPRIHGLARSKAELDEIVETS-LRKA-----GLWEEVKDRLHEPGTGLSGGQQQR 171
Query: 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADV 587
+ I+RAI +P ++L+DE SALD + V+E +D + T V+V H + R +
Sbjct: 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQR 231
Query: 588 IAVVQGRKIVKTGSHEELISNP 609
A +V+ G E++ +NP
Sbjct: 232 TAFFHLGNLVEVGDTEKMFTNP 253
|
Length = 267 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 9e-30
Identities = 79/237 (33%), Positives = 121/237 (51%), Gaps = 44/237 (18%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ L V FSY P F+L V AG+ +A++G SG+GKST+L+LI F P +G++
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG-----KDGASEGEVIE-AA 1130
+++G+D + ++++ QE LFA ++ +NI G K A + E +E AA
Sbjct: 57 LINGVDHTAS--PPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
F+ LP +LSGGQ+QRVA+AR +++ ILLLDE SALD
Sbjct: 115 AQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALD-- 161
Query: 1191 SERVVQQALQRLM----------RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236
AL+ M RK T ++V H AD++ +++G+I QG
Sbjct: 162 ------PALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG 212
|
Length = 231 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 26/237 (10%)
Query: 1013 NVEGTIELRGVHFSYP--SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070
E I + + F YP + + KD + V G+ +A+VG +GSGKST+ L+
Sbjct: 1 MKEEIIRVEHISFRYPDAATYAL---KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL 57
Query: 1071 DPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYG--KDGASEGEV 1126
P AG + V G+ + + +R+ + +V Q P ++ +++ +G G E+
Sbjct: 58 LPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEM 117
Query: 1127 IE----AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDE 1182
+E A + F++ P +LSGGQKQRVAIA + P+I++LDE
Sbjct: 118 VERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDE 166
Query: 1183 ATSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKNADQISVIESGKIIEQGT 1237
ATS LD R V + +++L ++ T + + H L AD++ V+ G+I+E+GT
Sbjct: 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGT 223
|
Length = 279 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 84/246 (34%), Positives = 125/246 (50%), Gaps = 34/246 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEFK+VS + L+I G++V ++G SGSGKST++ I + E SG++
Sbjct: 2 IEFKNVS---KHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 442 LLDGNNIKG--LDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSE 498
++DG + +D + +RQ+ G+V Q+ LF T EN+++G R A E
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR------VRGASKEE 112
Query: 499 AMSFISNLPERFETQVG--ERG----IQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
A +VG ER +LSGGQ+QR+AI+RA+ P ++L DE TSALD
Sbjct: 113 A----EKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
Query: 553 AESENSVQEALDRVMV-----GRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEEL 605
E E L +VM G T V+V H + + +I + +GR I + G + L
Sbjct: 169 PELR---HEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR-IAEDGDPQVL 223
Query: 606 ISNPNS 611
I NP S
Sbjct: 224 IKNPPS 229
|
Length = 240 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 2e-29
Identities = 71/244 (29%), Positives = 128/244 (52%), Gaps = 23/244 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---- 437
IE ++ S Y + V + I +I A++G SG GK+T++ I R + +
Sbjct: 4 IEIENFSAYYGEKKAV---KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 438 -SGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
G+I G +I LD+ R+++G+V Q+P F +I +N+ +G K ++
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
I + L +A L + ++++ + G +LSGGQ+QR+ I+RA+ P ++LLDE T
Sbjct: 121 RIVEES-LKKAA-----LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
SALD + +++ L+ + T V+V H + IR AD IA + ++++ G E++
Sbjct: 175 SALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234
Query: 608 NPNS 611
P +
Sbjct: 235 RPKN 238
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 2e-29
Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 23/242 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
+E K+++ Y + A+ D L I KI AL+G SG GKST + + R +
Sbjct: 5 MESKNLNLWYGEKQ--ALND-INLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 437 LSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
+ GE+LLDG NI K +D+ LR+++G+V Q+P F +I +N+ YG KD ++
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
+I A A L + + + + ++LSGGQ+QR+ I+R I P ++L+DE T
Sbjct: 122 KIVEWALKKAA------LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELIS 607
SALD S +++ + + T V+V H + R +D A +++ E++
Sbjct: 176 SALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235
Query: 608 NP 609
P
Sbjct: 236 EP 237
|
Length = 251 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 75/210 (35%), Positives = 113/210 (53%), Gaps = 27/210 (12%)
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIAL 1098
F+L V G+ +A++G SG+GKST+L+LI F +P +G + V+ L ++ +++
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG--LAPYQRPVSM 74
Query: 1099 VQQEPALFA-TSIYENILYG-----KDGASEGEVIE-AAKLANAHSFISALPEGYSTKVG 1151
+ QE LFA ++ +NI G K A + E + AA+ ++ LPE
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE------- 127
Query: 1152 ERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD----VESERVVQQALQRLMRKRT 1207
QLSGGQ+QRVA+AR +++ ILLLDE SALD E +V+Q R+RT
Sbjct: 128 ----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRT 181
Query: 1208 TIIVAHRLS-TIKNADQISVIESGKIIEQG 1236
++V H LS A QI+V+ GKI
Sbjct: 182 LLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-29
Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 22/237 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ ++VSF YP+ + A+ +I G+ VA++G +GSGKST+ ++ +P SGEI
Sbjct: 8 IKVENVSFSYPNSENNAL-KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYG-----KDDATMEE-ITRA 493
+DG I +LK +R++IG++ Q P T+ ++I +G M++ I
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
AK ++ P+ LSGGQKQR+AI+ + NP I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 554 ESENSVQEALD--RVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
+ + +++ + R +T + + H + AD + V K++ G +E+++N
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-29
Identities = 80/250 (32%), Positives = 117/250 (46%), Gaps = 38/250 (15%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLD--IPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
+ DV F Y P D +PAG+IVA++G SG+GKST+++LI F P SG
Sbjct: 2 LALDDVRFSYGHLP-------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDA---TMEEITRAAK 495
EIL++G + + + ++ QE LFA T+ +NI G E+ +
Sbjct: 55 EILINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEA 112
Query: 496 LSEAM---SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
+ + F+ LP +LSGGQ+QR+A++R +V+ ILLLDE SALD
Sbjct: 113 AAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALD 161
Query: 553 AESENSVQEALDRVM-----VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606
E L V T ++V H AD + + +I GS +EL+
Sbjct: 162 PALR---AEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
Query: 607 SNPNSAYAAL 616
S SA A L
Sbjct: 219 SGKASAAALL 228
|
Length = 231 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 5e-29
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 26/229 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E ++V+ + + + D LDI G+ V L+G SG GK+T + +I EP SG I
Sbjct: 1 VELENVTKRFGNVTAL---DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYG------KDDATMEEITRAA 494
+ G ++ L K + I +V Q AL+ T+ +NI +G D E + A
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+L + I +L +R Q LSGGQ+QR+A+ RAIV+ P + L+DE S LDA+
Sbjct: 116 ELLQ----IEHLLDRKPKQ-------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 555 SENSVQEALDRVM--VGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTG 600
++ L R+ +G TT+ V H ++ + AD IAV+ +I + G
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 5e-29
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 24/246 (9%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEP-- 436
H K+++ Y S+ +FD LDI ++ A +G SG GKST + R + P
Sbjct: 5 HASVKNLNLWYGSKQ--ILFD-INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNC 61
Query: 437 -LSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG-------KDDAT 486
+ GE+ +DG ++ ++ LR ++G+V Q+P F +I +N+ YG K+
Sbjct: 62 KVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKK 121
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
++EI + S L E ++ + +LSGGQ+QR+ I+RAI P++LL+DE
Sbjct: 122 LDEIVEKSLTS------VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE 175
Query: 547 ATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
SALD + N ++ + + T +VV H + + +D +A Q +IV+ + +E+
Sbjct: 176 PCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
Query: 606 ISNPNS 611
NP S
Sbjct: 236 FKNPQS 241
|
Length = 251 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 5e-29
Identities = 63/199 (31%), Positives = 110/199 (55%), Gaps = 11/199 (5%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--- 452
D I D L I GK+ A++G SGSGKST++++I + SG++ L+G L+
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 453 -LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510
K+ R+++G + Q AL T+ EN+ G + + + K EA+ + L +
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKV-GLNLKL 128
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL-DRVMVG 569
+ ++ E LSGG++QR+A++RAI+K P ++L DE T +LD ++ + V + L + G
Sbjct: 129 KQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEG 184
Query: 570 RTTVVVAHRLSTIRNADVI 588
+T ++V H + AD +
Sbjct: 185 KTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-29
Identities = 64/216 (29%), Positives = 118/216 (54%), Gaps = 24/216 (11%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078
E+ + SY P + +D + +V+ G+ +A+VG +G+GKST+L IL PT+G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 1079 VDGIDIKRLNLKSLRKHIALVQQEPAL---FATSIYENILYGKDGASEGEVI----EAAK 1131
V G +++ RK I V Q ++ F S+ + +L G G + AK
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 1132 LANAHSFISALPEGYSTKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
+ A + +++ +R + +LSGGQ+QRV +ARA++++P++LLLDE + +D +
Sbjct: 113 VDEALERVGL------SELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166
Query: 1191 SERVVQQALQRLMRKRTTII-VAHRLSTI-KNADQI 1224
++ + + L+ L R+ TI+ V H L + + D++
Sbjct: 167 TQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRV 202
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-28
Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 20/237 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I ++ +FS+ S+ E + NL V G +A+VG +G GK++++S +L P +
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGK--DGASEGEVIEAAKLANA 1135
+V +R +A V Q +F ++ +NIL+G D I+ L +
Sbjct: 675 VV------------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHD 722
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER-V 1194
+ LP G T++GERGV +SGGQKQRV++ARAV N ++ + D+ SALD R V
Sbjct: 723 ---LDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779
Query: 1195 VQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFK 1251
+ ++ +R +T ++V ++L + D+I ++ G I E+GT+ L N G F+
Sbjct: 780 FDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN--GPLFQ 834
|
Length = 1622 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 23/221 (10%)
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR 1093
D NL+V G +AL+G SGSGKST+L +I P +G++ ++G D R++ +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--D 71
Query: 1094 KHIALVQQEPALFA-TSIYENILYG------KDGASEGEVIEAAKLANAHSFISALPEGY 1146
+ I V Q ALF ++ +NI +G + V E +L P
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN-- 129
Query: 1147 STKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK- 1205
QLSGGQ+QRVA+ARA+ P++LLLDE ALD + + ++ L++L +
Sbjct: 130 ---------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180
Query: 1206 -RTTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSLVEN 1244
TT+ V H ++ AD+I V+ +GKI + G+ + ++
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-28
Identities = 80/266 (30%), Positives = 141/266 (53%), Gaps = 38/266 (14%)
Query: 358 MIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVG 417
MI+ ++K + + + L +VS L +PAG+I ++G
Sbjct: 1 MIKLSNITKVFHQGTKTIQAL------NNVS----------------LHVPAGQIYGVIG 38
Query: 418 GSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL---DLKWLRQQIGLVNQEPALFAT-T 473
SG+GKST+I + P SG +++DG ++ L +L R+QIG++ Q L ++ T
Sbjct: 39 ASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98
Query: 474 IRENILY--GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531
+ N+ D+ +EI R K++E ++ + L ++ ++ LSGGQKQR+AI
Sbjct: 99 VFGNVALPLELDNTPKDEIKR--KVTELLALVG-LGDKHDSYPS----NLSGGQKQRVAI 151
Query: 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTI-RNADVI 588
+RA+ NP +LL DEATSALD + S+ E L + +G T +++ H + + R D +
Sbjct: 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV 211
Query: 589 AVVQGRKIVKTGSHEELISNPNSAYA 614
AV+ ++++ G+ E+ S+P + A
Sbjct: 212 AVISNGELIEQGTVSEIFSHPKTPLA 237
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 59/225 (26%), Positives = 113/225 (50%), Gaps = 15/225 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+++R + +Y + + D +L V G+ L+G +G+GK+T L ++ PT+G
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENI-LYGK-DGASEGEVIEAAKLAN 1134
++G I+ + K+ R+ + Q ALF ++ E++ Y + G + E+ E
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----E 113
Query: 1135 AHSFISAL-PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER 1193
+ L + K R LSGG K+++++A A++ P +LLLDE TS LD S R
Sbjct: 114 VELLLRVLGLTDKANK---RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170
Query: 1194 VVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
+ + + + R+ I+ H + + D+I+++ GK+ G+
Sbjct: 171 AIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 81/260 (31%), Positives = 143/260 (55%), Gaps = 21/260 (8%)
Query: 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGS 421
D + + +KT + L L +E ++++ + + V D L I G+I AL+G SG
Sbjct: 3 DAIPRPQAKTRKALTPL---LEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGC 56
Query: 422 GKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILY 480
GKST++ ++ F +P +G+I+LDG ++ + ++ I ++ Q ALF T+ +NI +
Sbjct: 57 GKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMMFQSYALFPHMTVEQNIAF 114
Query: 481 G--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538
G +D EI ++++E + + + + QLSGGQ+QR+A++R++ K
Sbjct: 115 GLKQDKLPKAEIA--SRVNEMLGLV-----HMQEFAKRKPHQLSGGQRQRVALARSLAKR 167
Query: 539 PSILLLDEATSALDAESENSVQ-EALDRV-MVGRTTVVVAH-RLSTIRNADVIAVVQGRK 595
P +LLLDE ALD + + +Q E +D + VG T V+V H + + A IA++ K
Sbjct: 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227
Query: 596 IVKTGSHEELISNPNSAYAA 615
V+ G EE+ +P + Y+A
Sbjct: 228 FVQIGEPEEIYEHPTTRYSA 247
|
Length = 377 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 64/235 (27%), Positives = 117/235 (49%), Gaps = 33/235 (14%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE+ + SY +RP + +D +L V G+ AL+G +G+GKST+L IL P++G++
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPAL---FATSIYE----------NILYGKDGASEG 1124
+ G +++ + R I V Q+ ++ F ++ + + +
Sbjct: 62 KIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 1125 EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEAT 1184
+V EA + ++GE LSGGQKQRV +ARA+ +NP++LLLDE
Sbjct: 119 KVDEALERVGMEDLRDR-------QIGE----LSGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 1185 SALDVESERVVQQALQRLMRK-RTTIIVAHRLST-IKNADQISVIESGKIIEQGT 1237
+ +DV ++ + L+ L ++ +T ++V H L + D++ + +I G
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGP 221
|
Length = 254 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 23/242 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
I+ +DV+F Y D ++I +VA +G SG GKST + L R +
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 437 LSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
L GEI +DG NI KG+ + LR+ +G+V Q P F +I EN+ YG KD+A +
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
+ ++ E + + L + + ++ E LSGGQ+QR+ I+RA+ +PS+LL+DE
Sbjct: 121 Q-----RVEETLKGAA-LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELIS 607
SALD S V+E + + T V+V H + R +D A ++V+ +++ +
Sbjct: 175 SALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234
Query: 608 NP 609
NP
Sbjct: 235 NP 236
|
Length = 250 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 20/219 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE--PLS---GEILLDGNNI--KGLDLKWLR 457
L+ ++ AL+G SG GKST + + R + P + GEILLDG NI +D+ LR
Sbjct: 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELR 86
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
+++G+V Q+P F +I EN+ YG KD A + E + A L + +
Sbjct: 87 RRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAA------LWDEVK 140
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
++ E + LSGGQ+QR+ I+RA+ P +LL+DE SALD + ++E + + T
Sbjct: 141 DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYT 200
Query: 572 TVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNP 609
++V H + R +DV A K+++ G E++ + P
Sbjct: 201 IIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239
|
Length = 253 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-28
Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 19/194 (9%)
Query: 391 YPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI-- 448
YP P+V G+++AL+G +G+GKST++ + P SG +L+DG +
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 449 --KGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEAMSF-- 502
KGL L+ RQ++GLV Q+P LFA + +++ +G + + E ++ EA++
Sbjct: 59 SRKGL-LER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVG 116
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
S L ER T LSGG+K+R+AI+ A+ P +LLLDE T+ LD +
Sbjct: 117 ASGLRER-PTH------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169
Query: 563 LDRVMVGRTTVVVA 576
L R+ TVV++
Sbjct: 170 LRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 4e-28
Identities = 74/216 (34%), Positives = 108/216 (50%), Gaps = 23/216 (10%)
Query: 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
T E + R V Y + + D +L + A +G SG GKST L + R D
Sbjct: 14 TATEIKMRARDVSVFYGEKQAL---FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND 70
Query: 1072 P-----TAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG------- 1117
GK+ +DG DI RL++ LR + +V Q+P F SIYEN+ YG
Sbjct: 71 TIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLA 130
Query: 1118 KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177
+ A E++E + L A L E ++ E G LSGGQ+QR+ IARA+ +PE+
Sbjct: 131 RSKAELDEIVETS-LRKA-----GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEV 184
Query: 1178 LLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
+L+DE SALD + V++ + L + T +IV H
Sbjct: 185 ILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-28
Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 13/129 (10%)
Query: 1060 STVLSLILRFYDPTAGKVMVDGIDIKRLN-LKSLRKHIALVQQEPALFAT-SIYENILYG 1117
ST+L LI PT+G +++DG D L+ K LRK I +V Q+P LF ++ EN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1118 KD-GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPE 1176
++ EA + F+ E LSGGQKQRVAIARA+LK P+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 1177 ILLLDEATS 1185
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 6e-28
Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 38/239 (15%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+IE+R V + + D +L + +G+ +AL+G SGSGK+T+L LI P +G
Sbjct: 2 SIEVRNVSKRFGDFVAL---DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG------KDGASEGE---- 1125
++ G D + ++ +++ V Q ALF ++++N+ +G + E E
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK 116
Query: 1126 VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATS 1185
V E KL P QLSGGQ+QRVA+ARA+ P++LLLDE
Sbjct: 117 VHELLKLVQLDWLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFG 165
Query: 1186 ALDVESERVVQQALQRLMRK------RTTIIVAHRLS-TIKNADQISVIESGKIIEQGT 1237
ALD + V++ L+R +R+ TT+ V H ++ AD++ V+ G+I + GT
Sbjct: 166 ALDAK----VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 7e-28
Identities = 80/234 (34%), Positives = 126/234 (53%), Gaps = 23/234 (9%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--PTA- 1074
+E RG+ F Y + D +L+ + AL+G SG GKST L + R D P A
Sbjct: 7 MEARGLSFFYGDFQAL---HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 1075 --GKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG------KDGASEG 1124
G++++DG +I +++ LR+ + +V Q+P F SI+EN+ YG KD A
Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLA 123
Query: 1125 EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEAT 1184
E +E + L +A AL + ++ E + LSGGQ+QR+ IARA+ PE+LL+DE
Sbjct: 124 ERVERS-LRHA-----ALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177
Query: 1185 SALDVESERVVQQALQRLMRKRTTIIVAHRL-STIKNADQISVIESGKIIEQGT 1237
SALD + + +++ + L + T IIV H + + +D + GK+IE G
Sbjct: 178 SALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-28
Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 42/249 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +++S YP+ L+I G+ VA++G SG+GKST++ I R EP SG I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 442 LLDGNNI---KGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLS 497
LL+G +I +G L+ LR++IG++ Q L T+ EN+L+G R
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG----------RLG--- 106
Query: 498 EAMSFISNLPERFE-----------TQVG------ERGIQLSGGQKQRIAISRAIVKNPS 540
+L RF +VG +R QLSGGQ+QR+AI+RA+ + P
Sbjct: 107 -YKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165
Query: 541 ILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-AD-VIAVVQGRKI 596
++L DE ++LD ++ V + L R+ G T ++ H++ + AD ++ + G I
Sbjct: 166 LILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGE-I 224
Query: 597 VKTGSHEEL 605
V G+ EL
Sbjct: 225 VFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 8e-28
Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 14/232 (6%)
Query: 382 IEFKDVSFCYPSRPDVAI-FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I FK+VSF Y S D + +IP G+ ++VG +GSGKST+ L+ + SGE
Sbjct: 8 IVFKNVSFQYQS--DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSE 498
I + I + + LR+ IG+V Q P + ++ ++ +G ++ + ++SE
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSE 125
Query: 499 AMSFISNLPER-FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
A+ + L +E LSGGQKQR+AI+ + NPS+++LDEATS LD ++
Sbjct: 126 ALKQVDMLERADYEPN------ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
Query: 558 SVQEALDRVMVGR--TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
++ + + +V T + + H LS AD + V+ + K G+ E+
Sbjct: 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231
|
Length = 269 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 8e-28
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 35/231 (15%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNI--KGLDLKWLR 457
L+I + A +G SG GKSTV+ + R +E + GE+LLDG ++ G+D +R
Sbjct: 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84
Query: 458 QQIGLVNQEPALFAT-TIRENILYG----------KDDATMEEITRAAKLSEAMSFISNL 506
+ IG+V Q P F T +IR+N++ G D +E+ R A NL
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGA----------NL 134
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
+ ++ + G LSGGQ+QR+ I+RAI P +LL+DE SALD S ++++ ++ +
Sbjct: 135 WNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194
Query: 567 MVGRTTVVVAHRL-STIRNAD------VIAVVQGRKIVKTGSHEELISNPN 610
T V+V H + R +D + A + ++V+ E++ SNP
Sbjct: 195 KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPT 245
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 38/231 (16%)
Query: 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442
E +D++ Y P + + ++ G+ +A+VG +G+GKST++ I +P SG I
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 443 LDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENIL------------YGKDDATM 487
+ G ++ R++IG V Q ++ F ++R+ +L K D
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD--K 110
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
++ A + +S L +R Q+GE LSGGQ+QR+ ++RA+V++P +LLLDE
Sbjct: 111 AKVDEALERVG----LSELADR---QIGE----LSGGQQQRVLLARALVQDPDLLLLDEP 159
Query: 548 TSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTI-RNADVIAVVQGRKI 596
+ +D +++ + E L + G T +VV H L + D + ++ +
Sbjct: 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 72/218 (33%), Positives = 120/218 (55%), Gaps = 16/218 (7%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL---NLKSL 1092
+ +L V AG+ ++G SG+GKST++ + PT+G V+VDG D+ L L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1093 RKHIALVQQEPALFAT-SIYENILY--GKDGASEGEVIEAAKLANAHSFISALPEGYSTK 1149
R+ I ++ Q L ++ +++ N+ D + E+ K+ + + G K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEI--KRKVTELLALV-----GLGDK 133
Query: 1150 VGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--T 1207
LSGGQKQRVAIARA+ NP++LL DEATSALD + + + + L+ + R+ T
Sbjct: 134 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT 193
Query: 1208 TIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
+++ H + +K D ++VI +G++IEQGT S + +
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 78/241 (32%), Positives = 124/241 (51%), Gaps = 18/241 (7%)
Query: 1018 IELRGVHFSYPS-RP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
I L+ V ++Y + P E D NL + G A +G +GSGKST++ L+ + PT G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1076 KVMVDGIDI----KRLNLKSLRKHIALVQQ--EPALFATSIYENILYGKD--GASEGEVI 1127
V VD I K ++K +RK + LV Q E LF ++ +++ +G G S+
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQ---E 119
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
EA LA + + E K +LSGGQ +RVAIA + P+IL+LDE T+ L
Sbjct: 120 EAEALAREKLALVGISESLFEK---NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1188 DVESERVVQQALQRLMRKRTTII-VAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245
D + + + ++L + TI+ V H + + N AD + V+E GK++ G + ++
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDV 236
Query: 1246 D 1246
D
Sbjct: 237 D 237
|
Length = 280 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 15/233 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+ + SY S+ + V +D + + G+ L+G++G+GK+T+L +I P +GKV
Sbjct: 2 LEVTDLTKSYGSKVQAV--RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYGKD--GASEGEVIEAAKLAN 1134
+DG+D R +R+ I ++ E L+A + EN+ Y G S E+ A++A
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEI--KARIAE 116
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
+ L E +VGE S G KQ+VAIARA++ +P IL+LDE TS LD+ + R
Sbjct: 117 LSKRLQ-LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK 171
Query: 1195 VQQALQRLMRK-RTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245
+++L + R I +H + ++ D++ V+ G+++ +G+ +L
Sbjct: 172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224
|
Length = 245 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 19/223 (8%)
Query: 1022 GVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081
+ FS + K+ NLK+ G+ +A+ G +GSGK+++L LIL +P+ GK+ G
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98
Query: 1082 IDIKRLNLKSLRKHIALVQQEPALFATSIYENILYG--KDGASEGEVIEAAKLANAHSFI 1139
I+ Q + +I ENI++G D V++A +L I
Sbjct: 99 -------------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED---I 142
Query: 1140 SALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER-VVQQA 1198
+ PE +T +GE G+ LSGGQ+ R+++ARAV K+ ++ LLD LDV +E+ + +
Sbjct: 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202
Query: 1199 LQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSL 1241
+ +LM +T I+V ++ +K AD+I ++ G GT S L
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 14/213 (6%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--PT---AGKVMVDGIDI--KRL 1087
I K+ NL + AL+G SG GKST + + R D P G + +DG+DI +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 1088 NLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYS 1147
++ LRK + +V Q+P F SI++N+ YG E + + +AL +
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137
Query: 1148 TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRT 1207
K+ + + LSGGQ+QR+ IAR + +PE++L+DE SALD S ++ + +L T
Sbjct: 138 DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYT 197
Query: 1208 TIIVAHRLSTIKNADQISVIES----GKIIEQG 1236
+IV H + + A ++S S G+IIE G
Sbjct: 198 IVIVTHNM---QQATRVSKYTSFFLNGEIIESG 227
|
Length = 250 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 16/221 (7%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+EL+ V + I + +L VRAG+ +A+ G SG GKST+L ++ PT+G
Sbjct: 3 LLELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT 59
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAK--LAN 1134
++ +G D+ L ++ R+ ++ Q PALF ++ +N+++ + AA LA
Sbjct: 60 LLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLAR 119
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
ALP+ TK +LSGG+KQR+A+ R + P+ILLLDE TSALD ++R
Sbjct: 120 F-----ALPDSILTK---NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN 171
Query: 1195 VQQALQRLMR--KRTTIIVAH-RLSTIKNADQISVIESGKI 1232
+++ + R +R + + H + I++AD++ ++ G
Sbjct: 172 IEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-27
Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 31/233 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLKWLRQ- 458
++ G+I+ +VG SGSGKS + I + GEIL DG ++ L K LR+
Sbjct: 26 FELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKI 85
Query: 459 ---QIGLVNQEP--AL---------FATTIRENILYGKDDATMEEITRAAKLSEAMSFIS 504
+I ++ Q+P +L A +R + GK + E RA +L E + I
Sbjct: 86 RGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH---GKGLSKKEAKERAIELLELVG-IP 141
Query: 505 NLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD 564
+ R + +LSGG +QR+ I+ A+ NP +L+ DE T+ALD + + + L
Sbjct: 142 DPERRLK----SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLK 197
Query: 565 RVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
+ G +++ H L + AD +AV+ +IV+ G EE+ NP Y
Sbjct: 198 ELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYT 250
|
Length = 316 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 26/244 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E + +S + + + L I G+ + L+G SG GK+TV+ LI F P SG I
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATM-----EEITRAAK 495
+LDG +I + + + + V Q ALF T+ EN+ +G M EIT
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFG---LRMQKTPAAEITPRVM 126
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ M + +R + QLSGGQ+QR+AI+RA+V P +LLLDE+ SALD +
Sbjct: 127 EALRMVQLEEFAQR-------KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKL 179
Query: 556 ENSVQ---EALDRVMVGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
+Q +AL R + G T V V H + + +D I V++ +I + G+ E+ P +
Sbjct: 180 RKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238
Query: 612 AYAA 615
+ A
Sbjct: 239 LFVA 242
|
Length = 375 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 34/243 (13%)
Query: 1018 IELRGV--HFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
IE + V HF + + +L + G+ + ++G SGSGKST+L I + + T+G
Sbjct: 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG 56
Query: 1076 KVMVDGIDIK--RLNLKSLRKHIALVQQEPALFA-TSIYENILYGK---DGASEGEVIEA 1129
++VDG+ + +++ + +R+ +V Q+ LF + EN+++G GAS+ E A
Sbjct: 57 DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEE---A 113
Query: 1130 AKLANAHSFISALPEGYSTKVG--ERG----VQLSGGQKQRVAIARAVLKNPEILLLDEA 1183
K A KVG ER +LSGGQ+QRVAIARA+ P+++L DE
Sbjct: 114 EKQARE----------LLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEP 163
Query: 1184 TSALDVESERVVQQALQRLMRK-RTTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSL 1241
TSALD E V + +Q L + T +IV H + K A ++ I+ G+I E G L
Sbjct: 164 TSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
Query: 1242 VEN 1244
++N
Sbjct: 224 IKN 226
|
Length = 240 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 21/225 (9%)
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI---KRLN-- 1088
+ +L+V+ G+ +A++G SGSGK+T+L I P AG + V I I + L+
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 1089 ---LKSLRKHIALVQQEPALFA-TSIYENILYGK---DGASEGEVIEAAKLANAHSFISA 1141
++ LR+H+ V Q LF ++ ENI+ G G + E A+ A ++
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG 136
Query: 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
Y + LSGGQ+QRVAIARA+ PE++L DE TSALD E V +++
Sbjct: 137 KETSYPRR-------LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189
Query: 1202 LMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
L + KRT +IV H +S ++ AD+ ++ G+I+EQG +L +
Sbjct: 190 LAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
Length = 250 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 25/222 (11%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L + G+ V L+G SG GK+T++ +I +G I G +I L + ++ G+V
Sbjct: 25 LSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVF 82
Query: 465 QEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
Q ALF T+ +NI YG + M A +++E + + LP + QLSG
Sbjct: 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-GLP----GSERKYPGQLSG 137
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM------VGRTTVVVAH 577
GQ+QR+A++RA+ +P +LLLDE SALDA V+E L + +G TT++V H
Sbjct: 138 GQQQRVALARALATSPGLLLLDEPLSALDAR----VREHLRTEIRQLQRRLGVTTIMVTH 193
Query: 578 ----RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
LS AD I V+ I + G+ +E+ +P + + A
Sbjct: 194 DQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHPATPFVA 232
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 69/189 (36%), Positives = 103/189 (54%), Gaps = 22/189 (11%)
Query: 1050 ALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDI--KRLNLKSLRKHIALVQQE 1102
AL+G SGSGKST+L I R D G ++ +G +I R + LRK I +V Q+
Sbjct: 35 ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94
Query: 1103 PALFATSIYENILYG------KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQ 1156
P F SIYEN++YG KD E +E + L A ++ + ++ + +
Sbjct: 95 PNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKS-LKGA-----SIWDEVKDRLHDSALG 148
Query: 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLS 1216
LSGGQ+QRV IAR + +P+I+LLDE TSALD S +++ L L T ++V
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTR--- 205
Query: 1217 TIKNADQIS 1225
+++ A +IS
Sbjct: 206 SMQQASRIS 214
|
Length = 252 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 21/226 (9%)
Query: 403 FCLD----IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----KGLDLK 454
F LD +P + A+ G SGSGK+T+I LI P GEI+L+G + KG+ L
Sbjct: 12 FSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLP 71
Query: 455 WLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEE-ITRAAKLSEAMSFISNLPERFET 512
+++IG V QE LF ++R N+ YG A E ++ E + I +L R
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG-IGHLLGRLPG 130
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGR 570
+ LSGG+KQR+AI RA++ +P +LL+DE +ALD + + L+R+ G
Sbjct: 131 R-------LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI 183
Query: 571 TTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ V+H L + R AD + V++ ++ G E+ ++P+ + A
Sbjct: 184 PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLA 229
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 66/209 (31%), Positives = 112/209 (53%), Gaps = 12/209 (5%)
Query: 1031 PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK 1090
+ + N+++ G+ +VGQ G GKS++L IL GKV + + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 1091 SL----RKHIALVQQEPALFATSIYENILYGK--DGASEGEVIEAAKLANAHSFISALPE 1144
+ R +A Q+P L ++ ENI +G + V +A L I LP
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSL---QPDIDLLPF 128
Query: 1145 GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE-SERVVQQALQRLM 1203
G T++GERG+ LSGGQ+QR+ +ARA+ +N I+ LD+ SALD+ S+ ++Q+ + + +
Sbjct: 129 GDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188
Query: 1204 R--KRTTIIVAHRLSTIKNADQISVIESG 1230
+ KRT ++V H+L + +AD I ++ G
Sbjct: 189 QDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 22/214 (10%)
Query: 400 FDKFCLDIP---AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG----NNIKGLD 452
F L I ++ + G SG+GKST++ I +P G I+L+G ++ K ++
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 453 LKWLRQQIGLVNQEPALFA-TTIRENILYG-KDDATMEEITRAAKLSEAMSFISNLPERF 510
L +++IGLV Q+ ALF +REN+ +G K E+ +L + +
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-------- 121
Query: 511 ETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-- 567
+ R QLSGG+KQR+A++RA+ P +LLLDE SALD + L ++
Sbjct: 122 -DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180
Query: 568 VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTG 600
+ + V H LS AD I V++ ++ G
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 76/229 (33%), Positives = 112/229 (48%), Gaps = 32/229 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF +VS YP VA L I G+ + L G SG+GK+T++ L+ P G++
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 442 LLDGNNI---KGLDLKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDA----TME 488
+ G ++ +G L LR++IG+V Q+ L T+ EN+ + GK + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
R L PE QLSGG++QR+AI+RAIV +P +LL DE T
Sbjct: 120 AALRQVGLEHKAD---AFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPT 165
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVA-HRLSTIRN--ADVIAVVQGR 594
LD + + + L R+ TTV+VA H LS + VI + GR
Sbjct: 166 GNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 41/248 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE ++++ Y +RP + + L + G+I AL+G +G+GKST++ I +P SGEI
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENIL------------YGKDDAT 486
+ G ++ K LR IG V Q+ ++ F T+++ +L K D
Sbjct: 62 KIFGKPVRKR-RKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK- 117
Query: 487 MEEITRAAKLSEAMSF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544
K+ EA+ + +L +R Q+GE LSGGQKQR+ ++RA+ +NP +LLL
Sbjct: 118 -------EKVDEALERVGMEDLRDR---QIGE----LSGGQKQRVLLARALAQNPDLLLL 163
Query: 545 DEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLST-IRNADVIAVVQGRKIVKTGSH 602
DE + +D + + + L G+T ++V H L + D + + R ++ +G
Sbjct: 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPP 222
Query: 603 EELISNPN 610
EE+++ N
Sbjct: 223 EEVLTEEN 230
|
Length = 254 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 17/225 (7%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL---- 1092
KD +L + G+ ++G SGSGKST++ L+ R +PT G+V++DG+DI +++ L
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 1093 RKHIALVQQEPALFA-TSIYENILYGKD--GASEGEVIEAAKLANAHSFISALPEGYSTK 1149
RK IA+V Q AL ++ +N +G + G + E E A A + Y
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD- 163
Query: 1150 VGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK--RT 1207
+LSGG +QRV +ARA+ NP+ILL+DEA SALD +Q L +L K RT
Sbjct: 164 ------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRT 217
Query: 1208 TIIVAHRL-STIKNADQISVIESGKIIEQGTHSSLVENEDGAYFK 1251
+ ++H L ++ D+I+++++G++++ GT ++ N Y +
Sbjct: 218 IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 4e-27
Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 15/227 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--PTA- 1074
I+ R V+F Y + K ++++ +A +G SG GKST L L R D P
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 1075 --GKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG--KDGASEGEVIE 1128
G++ +DG +I K + + LRK++ +V Q P F SI+EN+ YG +G + I
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 1129 AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
+AL + K+ E LSGGQ+QR+ IARA+ +P +LL+DE SALD
Sbjct: 121 QRVEETLKG--AALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
Query: 1189 VESERVVQQALQRLMRKRTTIIVAHRL-STIKNADQISVIESGKIIE 1234
S V++ + L + T +IV H + + +D+ + G+++E
Sbjct: 179 PISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-27
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 23/231 (9%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--PTA- 1074
I VH Y + K +L + AL+G SG GKST L + R D P
Sbjct: 6 ITSSDVHLFYGKFEAL---KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 1075 --GKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG------KDGASEG 1124
G V + G +I ++ LRK + +V Q+P F SIYEN++YG KD A
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD 122
Query: 1125 EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEAT 1184
E +E + +A+ + + E + LSGGQ+QRV IAR + P+++LLDE T
Sbjct: 123 EAVETSLKQ------AAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176
Query: 1185 SALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIE 1234
SALD S ++ L L + T I+V H + +D+ + +G +IE
Sbjct: 177 SALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-27
Identities = 84/266 (31%), Positives = 130/266 (48%), Gaps = 49/266 (18%)
Query: 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
E +E+ +H Y EV+ K +L+ AG ++++G SGSGKST L I P+A
Sbjct: 4 ENALEVEDLHKRYGEH-EVL--KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA 60
Query: 1075 GKVMVDGIDIK-------------RLNLKSLRKHIALVQQEPALFA-TSIYENILYGKD- 1119
G + V+G +I+ + L+ LR + +V Q L++ ++ EN++
Sbjct: 61 GSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH 120
Query: 1120 --GASEGEVIEAAKLANAHSFISALPEGYSTKVG--ERG----VQLSGGQKQRVAIARAV 1171
G S+ E IE A E Y KVG E+ LSGGQ+QRVAIARA+
Sbjct: 121 VLGVSKAEAIERA-------------EKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167
Query: 1172 LKNPEILLLDEATSALDVESERVVQQALQRLMRK-----RTTIIVAHRLSTIKN-ADQIS 1225
PE++L DE TSALD E +V + L ++M+ RT ++V H + ++ + +
Sbjct: 168 AMEPEVMLFDEPTSALDPE---LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVI 223
Query: 1226 VIESGKIIEQGTHSSLVENEDGAYFK 1251
+ GKI E+G + N K
Sbjct: 224 FLHQGKIEEEGPPEQVFGNPQSPRLK 249
|
Length = 256 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-27
Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 18/220 (8%)
Query: 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN-LKS 1091
+ D +L+VR G+ + L+G +G+GK+T+ +LI FY P++G V+ G DI L +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 1092 LRKHIALVQQEPALFAT-SIYENILYGKD---------GASEGEVIEAAKLANAHSFISA 1141
R IA Q LF ++ EN+ G G E A +
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL-DVESERVVQQALQ 1200
+ G LS GQ++R+ IARA+ P++LLLDE + L E+E + + ++
Sbjct: 137 V--GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIR 193
Query: 1201 RL--MRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
L T +++ H + + AD+I V+ G++I +GT
Sbjct: 194 ELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 31/233 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-----GEILLDGNNI--KGLDLKWLR 457
+DIP + AL+G SG GKST + + R + + G + LDG +I G++L LR
Sbjct: 66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125
Query: 458 QQIGLVNQEPALFATTIRENILYG-----------------KDDATMEEITRAAKLSEAM 500
+++G+V Q P F +IRENI YG +DD E+ L +A
Sbjct: 126 KRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA 185
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
L + ++ + + LSGGQ+QR+ I+R + +P ++L+DE SALD + + ++
Sbjct: 186 -----LWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE 240
Query: 561 EALDRVMVGRTTVVVAHRL-STIRNADVIAV-VQGRKIVKTGSHEELISNPNS 611
+ ++ + T VVV H + R +D AV + G ++V+ +++ NP S
Sbjct: 241 DLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPES 293
|
Length = 305 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-27
Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 6/217 (2%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS---GEILLDGNNIKGLDLK 454
A+FD + I KI AL+G SG GKST + R + ++ G + ++G ++K D+
Sbjct: 17 ALFD-INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 455 WLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
LR+ +G+V Q+P +F +I ENI Y K ++ L L E + +
Sbjct: 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK 135
Query: 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTV 573
+ + + LSGGQ+QR+ I+RA+ P +LLLDE TSALD S ++E L + + +
Sbjct: 136 LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMI 195
Query: 574 VVAHRLST-IRNADVIAVVQGRKIVKTGSHEELISNP 609
+V H + R AD A ++++ G +E NP
Sbjct: 196 MVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232
|
Length = 246 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 5e-27
Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 19/233 (8%)
Query: 1018 IELRGVHFSY-PSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
I + V Y P E D N+ + +G +A++G +GSGKST+L + PT+G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1076 KVMVDGIDI----KRLNLKSLRKHIALVQQ--EPALFATSIYENILYGKD--GASEGEVI 1127
V + I K LK LRK + +V Q E LF ++ ++I +G G SE +
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED-- 120
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
A + A + LPE + +LSGGQ +RVAIA + PE+L+LDE T+ L
Sbjct: 121 -AKQKAREMIELVGLPEELLAR---SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 1188 DVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
D + + + + +L +++ TT++V H + ADQI V+ G + QGT
Sbjct: 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
Length = 290 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 5e-27
Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 42/262 (16%)
Query: 1018 IELRGVHFSYPSRP--------EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
+E+ + +P + + +L +R G+++ LVG+SGSGKST+ +LR
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 1070 YDPTAGKVMVDGIDIKRLN---LKSLRKHIALVQQEP--AL-----FATSIYENILYGKD 1119
P+ G++ DG DI L+ ++ LR+ + +V Q+P +L I E + +
Sbjct: 337 -IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP 395
Query: 1120 GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQL-------SGGQKQRVAIARAVL 1172
S E + I AL E VG SGGQ+QR+AIARA++
Sbjct: 396 KLSAAERDQRV--------IEALEE-----VGLDPATRNRYPHEFSGGQRQRIAIARALI 442
Query: 1173 KNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIES 1229
PE++LLDE TSALD + V L+ L +K + + ++H L+ ++ ++ V+
Sbjct: 443 LKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502
Query: 1230 GKIIEQGTHSSLVENEDGAYFK 1251
GKI+EQG ++ N Y +
Sbjct: 503 GKIVEQGPTEAVFANPQHEYTR 524
|
Length = 534 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-27
Identities = 63/212 (29%), Positives = 113/212 (53%), Gaps = 17/212 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
++L+ V + I + + +RAG+ + G SG GKST+L ++ PT+G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYG---KDGASEGEVIEAAKLAN 1134
+ +G DI L + R+ ++ Q P LF ++Y+N+++ ++ + A L +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD----PAIFLDD 120
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
F ALP+ TK +LSGG+KQR+++ R + P++LLLDE TSALD ++
Sbjct: 121 LERF--ALPDTILTK---NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175
Query: 1195 VQQALQRLMRKRTTII--VAHRLSTIKNADQI 1224
V + + R +R++ + V H I +AD++
Sbjct: 176 VNEIIHRYVREQNIAVLWVTHDKDEINHADKV 207
|
Length = 225 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-27
Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 31/225 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
I ++V+ Y + A+ + FC DIP GK+ AL+G SG GKSTV+ + R +
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFC-DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 437 LSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYGK---------DDA 485
L G +L DG ++ +D +R++IG+V Q+P F +I ENI +G D+
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 486 TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545
+ +AA E + ++ E G LSGGQ+QR+ I+R I P ++L+D
Sbjct: 131 VERSLRKAAVWDEC-----------KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMD 179
Query: 546 EATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIA 589
E SALD S ++E + + T V+V H + +R +D+ A
Sbjct: 180 EPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTA 224
|
Length = 269 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-27
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 424 STVISLIERFYEPLSGEILLDGNNIKGL-DLKWLRQQIGLVNQEPALFAT-TIRENILYG 481
ST++ LI +P SG ILLDG + GL K LR++IG+V Q+P LF T+REN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 482 KD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
A + F+ E LSGGQKQR+AI+RA++K P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 541 ILLLDEATS 549
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 7e-27
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 15/253 (5%)
Query: 999 RKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSG 1058
+KTQV D+ +E N E+R +F Y +R + V+ D NL ++ K A +G SG G
Sbjct: 64 KKTQV--DLLKEDFNHANVFEIRNFNFWYMNRTKHVL-HDLNLDIKRNKVTAFIGPSGCG 120
Query: 1059 KSTVLSLILRFYD-----PTAGKVMVDGIDIKRLNLKSL--RKHIALVQQEPALFATSIY 1111
KST L + + D G++ G + + + SL R I +V Q+P F SI+
Sbjct: 121 KSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIF 180
Query: 1112 ENILYG--KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169
+N+ YG +G ++ +++E K+ +AL + + + G LSGGQ+QR+ IAR
Sbjct: 181 DNVAYGPRNNGINDRKILE--KIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR 238
Query: 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIE 1228
A+ PE+LL+DE TSALD + +++ + L +K + IIV H ++ + +D+
Sbjct: 239 AIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFY 298
Query: 1229 SGKIIEQGTHSSL 1241
G I E G ++
Sbjct: 299 QGWIEEAGETKTI 311
|
Length = 329 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-27
Identities = 71/246 (28%), Positives = 121/246 (49%), Gaps = 23/246 (9%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD- 1071
+E + + ++ Y + + D + + + AL+G SG GKST+L R D
Sbjct: 2 TMEIILSTKNLNLWYGEKHAL---YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL 58
Query: 1072 ----PTAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG------KD 1119
G ++ +G +I ++ +LR+ I +V Q P F SIYEN+ YG K+
Sbjct: 59 IPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN 118
Query: 1120 GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILL 1179
+ ++E + L A AL + ++ + + LSGGQ+QR+ IAR + NPE++L
Sbjct: 119 KKTLDTIVEKS-LKGA-----ALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVIL 172
Query: 1180 LDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNA-DQISVIESGKIIEQGTH 1238
+DE SALD + ++ ++ L ++ T IIV H + D + GK+IE
Sbjct: 173 MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKT 232
Query: 1239 SSLVEN 1244
+ + EN
Sbjct: 233 TQIFEN 238
|
Length = 253 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-27
Identities = 65/220 (29%), Positives = 116/220 (52%), Gaps = 20/220 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-----GEILLDGNNI--KGLDLKWLR 457
+ IP ++ AL+G SG GKST++ R + + G+IL +G NI G D+ LR
Sbjct: 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
++IG+V Q P F +I EN+ YG K+ T++ I + L A L + +
Sbjct: 87 RKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKS-LKGAA-----LWDEVK 140
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
++ + + LSGGQ+QR+ I+R + NP ++L+DE SALD + +++ ++ + T
Sbjct: 141 DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYT 200
Query: 572 TVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPN 610
++V H + R +D + K+++ ++ NP+
Sbjct: 201 VIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 8e-27
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 23/221 (10%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL--DLKWLRQQIGL 462
+ G+I L+G +G+GK+T+ +LI F P SG +L DG +I GL R IG
Sbjct: 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA-RLGIGR 79
Query: 463 VNQEPALFAT-TIRENIL----------YGKDDATMEEITRAAKLSEAMSFISNLPERFE 511
Q P LF T+ EN++ A EE + E + + L + +
Sbjct: 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV-GLADLAD 138
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GR 570
GE LS GQ++R+ I+RA+ +P +LLLDE + L+ E + E + + G
Sbjct: 139 RPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGI 194
Query: 571 TTVVVAHRLSTIRN-ADVIAV-VQGRKIVKTGSHEELISNP 609
T ++V H + + + AD + V QGR I G+ +E+ +NP
Sbjct: 195 TVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPDEVRNNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 8e-27
Identities = 68/237 (28%), Positives = 128/237 (54%), Gaps = 19/237 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+ + Y ++ + +L+V G+ +AL+G++G+GK+T+L I+ P +G++
Sbjct: 4 LEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 1078 MVDGIDIKRLNL-KSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANA 1135
+ DG DI L + R IA V + +F ++ EN+L G + E E L
Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER-DLEEV 119
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVV 1195
+ L E + + G LSGG++Q +AIARA++ P++LLLDE + L + ++V
Sbjct: 120 YELFPRLKERRNQRAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIV 172
Query: 1196 QQ---ALQRLMRKR--TTIIVAHRL-STIKNADQISVIESGKIIEQGTHSSLVENED 1246
++ A++ L ++ T ++V ++ AD+ V+E+G+I+ GT + L+ + D
Sbjct: 173 EEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229
|
Length = 237 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 9e-27
Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 29/230 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+RG+ +P VV D +L V+ G+ AL+G++G+GKST++ ++ Y P +G++
Sbjct: 5 LEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1078 MVDGIDIKRLNLKS----LRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKL 1132
VDG K + +KS +R I +V Q L T ++ ENI+ G E
Sbjct: 62 RVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILG----LEPSKGGLIDR 114
Query: 1133 ANAHSFISALPEGY------STKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
A + I L E Y KV + LS G++QRV I +A+ + +L+LDE T+
Sbjct: 115 RQARARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 1187 L-DVESERVVQQALQRLMRKRTTII-VAHRLSTIKN-ADQISVIESGKII 1233
L E++ + + L+RL + TII + H+L + AD+++V+ GK++
Sbjct: 171 LTPQEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 1e-26
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 20/215 (9%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDI--KRLN 1088
D NL + K AL+G SG GKST L + R D G+V++DG +I K ++
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 1089 LKSLRKHIALVQQEPALFATSIYENILYG------KDGASEGEVIEAAKLANAHSFISAL 1142
+ LRK + +V Q+P F SIY+N+ YG KD +++E A +AL
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKK------AAL 133
Query: 1143 PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRL 1202
+ + + ++LSGGQ+QR+ IAR + P+++L+DE TSALD S ++ + L
Sbjct: 134 WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193
Query: 1203 MRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236
++ T +IV H + +D + G +IE
Sbjct: 194 KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228
|
Length = 251 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 73/246 (29%), Positives = 114/246 (46%), Gaps = 24/246 (9%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
+ I + V F Y S KD + + G+ ++VG +GSGKST+ L++
Sbjct: 3 DKNSIIVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV 61
Query: 1073 TAGKVMVDGIDIKRLNLKSLRKHIALVQQEPA-LFATSI--------YENILYGKDGASE 1123
+G++ + I N + LRKHI +V Q P F SI EN D
Sbjct: 62 KSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR 121
Query: 1124 GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183
V EA K + P LSGGQKQRVAIA + NP +++LDEA
Sbjct: 122 -RVSEALKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEA 169
Query: 1184 TSALDVESERVVQQALQRL-MRKRTTII-VAHRLSTIKNADQISVIESGKIIEQGTHSSL 1241
TS LD ++ + + ++++ TII + H LS AD + V+ G + ++GT + +
Sbjct: 170 TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
Query: 1242 VENEDG 1247
++ +
Sbjct: 230 FDHAEE 235
|
Length = 269 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 1e-26
Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 20/228 (8%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-----GEILLDGNNI-- 448
D I LDIP + AL+G SG GKST I + R + + G I LDG +I
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 449 KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSF 502
+D+ LR+++G+V Q+P F +I +N+ YG D+ +EE + + A
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAA--- 131
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
L + + ++ + + LSGGQ+QR+ I+R I +P ++L+DE SALD S +++
Sbjct: 132 ---LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 563 LDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNP 609
+ ++ T V+V H + R + + +I+++G +++ NP
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236
|
Length = 250 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 51/227 (22%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLD-----IPAGKIVALVGGSGSGKSTVISLI--ERFY 434
+ F++++ + + K L G++ A++G SG+GKST+++ + R
Sbjct: 4 LSFRNLT--VTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG 61
Query: 435 EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRA 493
+SGE+L++G LD + R+ IG V Q+ L T T+RE +++ A
Sbjct: 62 LGVSGEVLINGRP---LDKRSFRKIIGYVPQDDILHPTLTVRETLMF------------A 106
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
AKL RG+ SGG+++R++I+ +V NPS+L LDE TS LD+
Sbjct: 107 AKL--------------------RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144
Query: 554 ESENSVQEALDR-VMVGRTTVVVAHRLST--IRNAD-VIAVVQGRKI 596
S V L R GRT + H+ S+ D ++ + QGR I
Sbjct: 145 SSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 1e-26
Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 20/228 (8%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS----LIERFYEP-LSGEILLDGNNIKG 450
V + D L+IP I AL+G SGSGKST++ LIE + E +SGE+ LDG +I
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 451 LDLKWLRQQIGLVNQEPALFAT-TIRENILYG-------KDDATMEEITRAAKLSEAMSF 502
+D+ LR+++ +V Q P +I EN+ G K ++E R A L +A
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWA-LEKA--- 130
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
L + + ++ +LSGGQ+QR+ I+RA+ P +LL DE T+ LD E+ ++
Sbjct: 131 --QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL 188
Query: 563 LDRVMVGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
+ T V+V H R +D +A + +IV+ G E+ +NP
Sbjct: 189 FLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236
|
Length = 250 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 20/214 (9%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN--- 1088
+ + K +L + G+ +A+VG SGSGKST+L L+ +PT+G+V+ +G + +L+
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 1089 LKSLR-KHIALVQQEPALFAT-SIYENI----LYGKDGASEGEVIEAAKLANAHSFISAL 1142
LR K + + Q L + EN+ L GK E + L
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKV------- 129
Query: 1143 PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRL 1202
G ++ R +LSGG++QRVAIARA++ P ++L DE T LD + +++ + L
Sbjct: 130 --GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 1203 MRKRTT--IIVAHRLSTIKNADQISVIESGKIIE 1234
R+ T ++V H L K D++ ++ G++
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 27/224 (12%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKRLNLK-- 1090
D ++ + + A++G SG GKST L I R D G++ G ++ ++
Sbjct: 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116
Query: 1091 SLRKHIALVQQEPALFATSIYENILYG-----KDGASEGEVIEAAKLANAHSFISALPEG 1145
+LR+ I +V Q+P F SIY+N+ YG DG + V E+ + A AL +
Sbjct: 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA-------ALWDE 169
Query: 1146 YSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK 1205
++ G+ LSGGQ+QR+ IARA+ +PE++L+DE SALD + ++ ++ L +
Sbjct: 170 VKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE 229
Query: 1206 RTTIIVAHRLSTIKNADQIS-----VIESGKIIEQGTHSSLVEN 1244
T +IV H + + A +IS + G+++E + EN
Sbjct: 230 YTVVIVTHNM---QQAARISDKTAVFLTGGELVEFDDTDKIFEN 270
|
Length = 285 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 72/248 (29%), Positives = 128/248 (51%), Gaps = 16/248 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E D++ Y S+ V + G+I L+G +G+GK+T++ +I P SG++
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
+DG + D ++R++IG++ E L+A T REN+ Y + A+++E
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ L E + +VGE S G KQ++AI+RA+V +PSIL+LDE TS LD +
Sbjct: 119 KRL-QLLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 561 EALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS-----NPNSAY 613
+ + ++ GR + +H + + D + V+ ++V GS E L + N +
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIF 233
Query: 614 AALVQLQE 621
A ++L+E
Sbjct: 234 AFALKLEE 241
|
Length = 245 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 24/239 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE+ +HF Y + + K +L + G AL+G +G+GKST+L + Y P G+V
Sbjct: 5 IEVEDLHFRYKDGTKAL--KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYG--KDGASEGEVI----EA 1129
V G ++ N K +R + LV Q+P +F++++++++ +G G + EV EA
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
K F P LS GQK+RVAIA + +P++++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 1190 ESERVVQQALQRLMRKRTTIIVA-HRLS-TIKNADQISVIESGKIIEQGTHSSLVENED 1246
+ + + L RL + T+IVA H + + ADQ+ V++ G+++ +G S L +ED
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT-DED 229
|
Length = 274 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 69/218 (31%), Positives = 110/218 (50%), Gaps = 22/218 (10%)
Query: 373 RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432
+ + KD+ Y + AI + KI AL+G SGSGKST + + R
Sbjct: 12 ITFPEEEIALSTKDLHVYYGKKE--AIKG-IDMQFEKNKITALIGPSGSGKSTYLRSLNR 68
Query: 433 FYEPL-----SGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG---- 481
+ + +G+IL G +I K +++ +R+ IG+V Q P FA +I ENI +
Sbjct: 69 MNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERA 128
Query: 482 --KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539
KD ++EI + L +A L ++ + + + + LSGGQ+QR+ I+RAI P
Sbjct: 129 GVKDKKVLDEIVETS-LKQAA-----LWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKP 182
Query: 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAH 577
ILL+DE SALD S ++E + + T ++V H
Sbjct: 183 DILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 17/196 (8%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
+++SF Y + I D LD+ AG+I+AL G +G+GK+T+ ++ + SG ILL+
Sbjct: 3 ENISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 445 GNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEAMSF 502
G IK K R+ IG V Q+ LF ++RE +L G + +A + + +
Sbjct: 61 GKPIK---AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD-AGNEQAETVLKDLD- 115
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
+ L ER LSGGQKQR+AI+ A++ +L+ DE TS LD ++ V E
Sbjct: 116 LYALKERHPLS-------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
Query: 563 LDRVM-VGRTTVVVAH 577
+ + G+ +V+ H
Sbjct: 169 IRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 20/217 (9%)
Query: 1010 ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
+ + I L+ V SY + V K+ + GK AL+G SG GKSTVL + R
Sbjct: 6 KKISKNIIISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62
Query: 1070 YD-----PTAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYGK--DG 1120
D G+V+ DG D+ R++ +R+ I +V Q+P F SIYENI +G +G
Sbjct: 63 NDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARING 122
Query: 1121 ASEG--EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEIL 1178
+ E++E + L A A+ + K+ E G LSGGQ+QR+ IAR + PE++
Sbjct: 123 YTGDMDELVERS-LRKA-----AVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVI 176
Query: 1179 LLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRL 1215
L+DE SALD S +++ + L + T +IV H +
Sbjct: 177 LMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNM 213
|
Length = 269 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 26/228 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ L + FSY +P F+L G+ A+VG SGSGKST+L+LI F P +G+V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG-----KDGASEGEVIEAAK 1131
+++G+D+ + ++++ QE LFA ++ +N+ G K A + + IE A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVA- 112
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
G + +LSGG++QRVA+AR ++++ +LLLDE +ALD
Sbjct: 113 ---------LARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 1192 ERVVQQALQRLMRKR--TTIIVAHRLSTIKNADQISV-IESGKIIEQG 1236
+ + L + T ++V H+ K Q V +++G+I QG
Sbjct: 164 RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-26
Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 31/288 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE K+++F Y + + + G+ ++++G +GSGKST + LI+ E SG+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEA 499
++DG+ + ++ +R +IG+V Q P T+ +++ +G ++ + +++EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE--- 556
+ + + F+ + R LSGGQKQR+AI+ A+ P I++LDEATS LD E
Sbjct: 125 LELVGM--QDFKEREPAR---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179
Query: 557 -NSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+++ D T + + H L + +D + V++ ++ T + EL S N
Sbjct: 180 IKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGND---- 233
Query: 616 LVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKE 663
L+QL + P + + L + +EKE
Sbjct: 234 LLQL--------------GLDIPFTTSLVQSLRQNGYDLPEGYLTEKE 267
|
Length = 279 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 32/219 (14%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP----TAGKVMVDGIDIKRLNLKSLR 1093
D NL ++ G+ +ALVG+SGSGKS IL P T+G++++DG + L+++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG-- 61
Query: 1094 KHIALVQQEP-----ALF--ATSIYENI-----LYGKDGASEGEVIEAAKLANAHSFISA 1141
+HIA + Q P LF E + L + A E +EA L + +
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
P QLSGG QRV IA A+L P L+ DE T+ LDV ++ V + L+
Sbjct: 122 YP-----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1202 LMRKRTT--IIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
L + T +++ H L + AD+++V++ G+I+E+GT
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-26
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 46/229 (20%)
Query: 1017 TIELRGVHFSYPSRPEVV---IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI--LRFYD 1071
T+ R + + S P + K+ + K + G+ A++G SG+GKST+L+ + R
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 1072 PTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAA 1130
+G+V+++G + + +S RK I V Q+ L T ++ E +++ AA
Sbjct: 63 GVSGEVLINGRPLDK---RSFRKIIGYVPQDDILHPTLTVRETLMF------------AA 107
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
KL RG LSGG+++RV+IA ++ NP +L LDE TS LD
Sbjct: 108 KL--------------------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
Query: 1191 SERVVQQALQRLMRK-RTTIIVAHRLST--IKNADQISVIESGKIIEQG 1236
S V L+RL RT I H+ S+ + D++ ++ G++I G
Sbjct: 146 SALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 5e-26
Identities = 74/217 (34%), Positives = 116/217 (53%), Gaps = 9/217 (4%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT-----AGKVMVDGIDI--KRLNL 1089
K+ NL V+ G AL+G SG GK+T L I R +D T G++++DG DI R++
Sbjct: 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80
Query: 1090 KSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYST 1148
++R+ + +V Q+P F T S+++N++ G A + ++A +AL +
Sbjct: 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKD 140
Query: 1149 KVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTT 1208
++ LSGGQ+QR+ IARA+ PEILL+DE TSALD S ++ + L + T
Sbjct: 141 RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTI 200
Query: 1209 IIVAHRL-STIKNADQISVIESGKIIEQGTHSSLVEN 1244
IIV H + + +D S G ++E G L N
Sbjct: 201 IIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 6e-26
Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 16/229 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I K+ F + S+ + LD+P G +VA+VG +G GK+++IS + P S
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS--- 671
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEAM 500
D + + +R + V Q +F T+R+NIL+G D E RA ++
Sbjct: 672 --DASVV-------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYE--RAIDVTALQ 720
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV- 559
+ LP T++GERG+ +SGGQKQR++++RA+ N + + D+ SALDA V
Sbjct: 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
+ + + G+T V+V ++L + D I +V I + G++EEL +N
Sbjct: 781 DKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829
|
Length = 1622 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-26
Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 13/217 (5%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ----QI 460
L I G+I ++G SGSGKST++ L+ R EP G++L+DG +I + LR+ +I
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 461 GLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
+V Q AL T+ +N +G + A + R K +A+ + E
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVG-----LENYAHSYPD 163
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG--RTTVVVAH 577
+LSGG +QR+ ++RA+ NP ILL+DEA SALD +Q+ L ++ RT V ++H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 578 RL-STIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
L +R D IA++Q ++V+ G+ +E+++NP + Y
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
Length = 400 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-26
Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 18/241 (7%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+RG+ + +V D + VR G+ L+G +G+GK+T+ +LI F PT+G V
Sbjct: 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV 57
Query: 1078 MVDGIDIKRLNL-KSLRKHIALVQQEPALFAT-SIYENILYG-----KDGASEGEVI--E 1128
+ DG DI L + R I Q P LF ++ EN++ G E
Sbjct: 58 LFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREE 117
Query: 1129 AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL- 1187
A + + G + +LS GQ++R+ IARA+ +P++LLLDE + L
Sbjct: 118 REARERAEELLERV--GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175
Query: 1188 DVESERVVQQALQRL-MRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245
E+E + + ++ L R T ++V H + + + AD+++V++ G++I +GT + N
Sbjct: 176 PEETEELA-ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
Query: 1246 D 1246
Sbjct: 235 R 235
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 6e-26
Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 15/220 (6%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI----KRL 1087
E D N + GK A+VGQ+GSGKST++ I PT G V VD I I K
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 1088 NLKSLRKHIALVQQ--EPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEG 1145
++ +RK I +V Q E LF ++ I++G + ++ K AH + L G
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPK--NFKMNLDEVK-NYAHRLLMDL--G 133
Query: 1146 YSTKVGERG-VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR 1204
+S V + Q+SGGQ +++AI + NP+I++LDE T+ LD +S+R V + L+ L
Sbjct: 134 FSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193
Query: 1205 K--RTTIIVAHRLSTI-KNADQISVIESGKIIEQGTHSSL 1241
+T I+V+H ++ + + AD++ V++ G I+ Q + L
Sbjct: 194 DENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 7e-26
Identities = 72/252 (28%), Positives = 125/252 (49%), Gaps = 26/252 (10%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
T+ + SY R V D +L+V +G+ + L+G +G+GK+T +I+ P +G
Sbjct: 3 STLVAENLAKSYKKRKVV---NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 1076 KVMVDGIDIKRLNL-KSLRKHIALVQQEPALF-ATSIYENIL-----YGKDGASEGEVIE 1128
K+++D DI +L + K R I + QE ++F ++ +NI+ KD E
Sbjct: 60 KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119
Query: 1129 AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
L I+ L + + LSGG+++RV IARA+ NP+ +LLDE + +D
Sbjct: 120 LDALLEEFH-ITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
Query: 1189 VESERVVQQALQRLMRKRTTI-IVAHRL-STIKNADQISVIESGKIIEQGTHSSLVENED 1246
+ +Q+ ++ L + + I H + T+ D+ +I GK++ +G+ +V NED
Sbjct: 172 PIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231
Query: 1247 ------GAYFKL 1252
G FKL
Sbjct: 232 VRRVYLGENFKL 243
|
Length = 243 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-26
Identities = 75/210 (35%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK 1094
KD +L V+ G+ + L+G SG GK+T+L +I TAG + G DI RL ++
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL--PPQKR 76
Query: 1095 HIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153
+V Q ALF ++ +NI YG G A ++A + G +
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSERKY 131
Query: 1154 GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTIIV 1211
QLSGGQ+QRVA+ARA+ +P +LLLDE SALD ++ +++L R+ TTI+V
Sbjct: 132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV 191
Query: 1212 AH----RLSTIKNADQISVIESGKIIEQGT 1237
H LS AD+I V+ G I + GT
Sbjct: 192 THDQEEALSM---ADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 16/211 (7%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLV 463
L +P G+IVAL+G +G+GK+T++ I P SG I DG +I GL + R IG V
Sbjct: 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
Query: 464 NQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
+ +F T+ EN+L G + R A+L L ER + G LS
Sbjct: 81 PEGRRIFPELTVEENLLLGAYARRRAK--RKARLERVYELFPRLKERRKQLAG----TLS 134
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM----VGRTTVVVAHR 578
GG++Q +AI+RA++ P +LLLDE + L + V+E + + G T ++V
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELRDEGVTILLVEQN 191
Query: 579 LSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
AD V++ ++V G+ EL+++
Sbjct: 192 ARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 20/219 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDLKWLR 457
LD +I AL+G SGSGKST++ I R + ++G I+ +G+NI D LR
Sbjct: 26 LDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR 85
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
++IG+V Q+P F +I EN++YG KD ++E + L A ++ + +
Sbjct: 86 KEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKS-LKGA-----SIWDEVK 139
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
++ + + LSGGQ+QR+ I+R + +P I+LLDE TSALD S ++E L + T
Sbjct: 140 DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYT 199
Query: 572 TVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNP 609
++V + R +D +++ +++ NP
Sbjct: 200 MLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238
|
Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-25
Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 43/262 (16%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF--YDPTA---GKVMVDGIDIKR 1086
V K + + AG+++ALVG+SGSGKS IL A G ++ DG D+
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 1087 LNLKSLRK----HIALVQQEPALFATS----------IYENILY---GKDGASEGEVIEA 1129
+ + LR I ++ QEP TS + E + A+ +E
Sbjct: 82 ASERQLRGVRGNKIGMIFQEPM---TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALEL 138
Query: 1130 AK---LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
+ + + A P +LSGGQ+QRV IA A+ P++L+ DE T+A
Sbjct: 139 LELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTA 187
Query: 1187 LDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243
LDV + + L+ L + + + H L ++ AD++ V++ G+I+E GT +L
Sbjct: 188 LDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247
Query: 1244 NEDGAYF-KLINLQQRQDPQHS 1264
Y KL+ + DP
Sbjct: 248 APQHPYTRKLLAAEPSGDPPPL 269
|
Length = 534 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 20/225 (8%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKST---VLSLILRFYD--PTAGKVMVDGIDI--KRLN 1088
K+ NL + + A++G SG GKST L+L+++ G++ +G +I +++
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1089 LKSLRKHIALVQQEPALFATSIYENILYG------KDGASEGEVIEAAKLANAHSFISAL 1142
L LRK+I +V Q+ F SI++N+ YG K+ E++E + AL
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD------VAL 141
Query: 1143 PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRL 1202
+ ++ + + LSGGQ+QR+ IARA+ NP++LL+DE TSALD S R +++ + +L
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 1203 MRKRTTIIVAHRL-STIKNADQISVIESGKIIEQGTHSSLVENED 1246
K T +IV H + + +DQ + G+++E + + N D
Sbjct: 202 KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 37/236 (15%)
Query: 1017 TIELRGVHFSY--PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
I +R ++ Y S + V+F D NL++ G+ + L G SGSGK+T+L+LI
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLF-DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE 59
Query: 1075 GKVMVDGIDIKRLN---LKSLRKHIALVQQEPALF-----------ATSIYENILYGKDG 1120
G + V G ++ + L LR++I + Q L A + N+ Y +
Sbjct: 60 GSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEAR 119
Query: 1121 ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLL 1180
++EA L + + P LSGGQKQRVAIARA++ P+++L
Sbjct: 120 ERARAMLEAVGLGDH---LDYYPH-----------NLSGGQKQRVAIARALVHRPKLVLA 165
Query: 1181 DEATSALDVESERVVQQALQRLMRKR--TTIIVAH--RLSTIKNADQISVIESGKI 1232
DE T+ALD +S R V + +Q+L R++ T +IV H R+ + AD+I +E GK+
Sbjct: 166 DEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDV--ADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 17/190 (8%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--PTA---GKVMVDGIDI--KRLNL 1089
K+ L + + A +G SG GKST+L R D P GKV G ++ ++
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 1090 KSLRKHIALVQQEPALFATSIYENILYG-KDGASEG---EVIEAAKLANAHSFISALPEG 1145
+R+ I +V Q+P F SIY+NI YG + +G E++E + L A AL +
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERS-LRQA-----ALWDE 140
Query: 1146 YSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK 1205
K+ + G+ LSGGQ+QR+ IARA+ PE++L+DE SALD S +++ + L +
Sbjct: 141 VKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ 200
Query: 1206 RTTIIVAHRL 1215
T IIV H +
Sbjct: 201 YTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (267), Expect = 1e-25
Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 33/247 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
I KDV Y + LD ++ AL+G SG GKST + + R +
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 437 LSGEILLDGNNIKG--LDLKWLRQQIGLVNQEPALFATTIRENILYG------KD----D 484
++GEI +G NI G +DL LR+++G+V Q+P F ++ +N+ YG KD D
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 485 ATMEE-ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543
+EE + +AA E + + F SGGQ+QRI I+RA+ P ++L
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAF-----------SGGQQQRICIARALAVRPKVVL 170
Query: 544 LDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSH 602
LDE TSALD S + ++E L + T ++V H L R +D A + +++ G
Sbjct: 171 LDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPT 230
Query: 603 EELISNP 609
EE+ P
Sbjct: 231 EEMFIAP 237
|
Length = 251 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 20/214 (9%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--PTA---GKVMVDGIDI--KRLNL 1089
D ++ + AL+G SG GKST L I R D P+A G+++ +G++I +N+
Sbjct: 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97
Query: 1090 KSLRKHIALVQQEPALFATSIYENILYGKDGASE------GEVIEAAKLANAHSFISALP 1143
+LR+ I +V Q+P F SIY NI + A E E++E + L A AL
Sbjct: 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEES-LTKA-----ALW 151
Query: 1144 EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM 1203
+ ++ + LSGGQ+QR+ IAR + P +LLLDE SALD S +++ + L
Sbjct: 152 DEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK 211
Query: 1204 RKRTTIIVAHRL-STIKNADQISVIESGKIIEQG 1236
+ + IIV H + ++ +D+ + +G ++E
Sbjct: 212 EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 2e-25
Identities = 99/399 (24%), Positives = 188/399 (47%), Gaps = 43/399 (10%)
Query: 246 EVIGNVRTVQAFAGE----DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWS 301
E++ ++ ++ +A E DK + +E L K +K+ +G + C FL
Sbjct: 501 EILNGIKVLKLYAWELAFLDKVEGIRQEEL----KVLKKSAYLHAVGTFTWVCTPFLVAL 556
Query: 302 LLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPI-----F 356
+ V +I + ++F ++ I L I++ ++A + +
Sbjct: 557 ITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616
Query: 357 EMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
E +E D++ + + K G I + +F + +R + IP G +VA+V
Sbjct: 617 EELEPDSIERRTIKPGE-----GNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVV 670
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G G GKS+++S + + + G + + G+ + V Q+ + ++RE
Sbjct: 671 GQVGCGKSSLLSALLAEMDKVEGHVHMKGS-------------VAYVPQQAWIQNDSLRE 717
Query: 477 NILYGKDDATMEEITRAAKLSEAMSFISNL---PERFETQVGERGIQLSGGQKQRIAISR 533
NIL+GK + E ++ EA + + +L P T++GE+G+ LSGGQKQR++++R
Sbjct: 718 NILFGK---ALNE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773
Query: 534 AIVKNPSILLLDEATSALDAESENSVQEAL---DRVMVGRTTVVVAHRLSTIRNADVIAV 590
A+ N I L D+ SA+DA + E + + V+ +T ++V H +S + DVI V
Sbjct: 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV 833
Query: 591 VQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNS 629
+ G KI + GS++EL+ + A+A ++ QQ +
Sbjct: 834 MSGGKISEMGSYQELLQR-DGAFAEFLRTYAPDEQQGHL 871
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-25
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 24/242 (9%)
Query: 382 IEFKDVSFCY-PSRPDVAIFDKFCLD-----IPAGKIVALVGGSGSGKSTVISLIERFYE 435
I+ ++++ Y P F+K LD I G+ V L+G +GSGKST+I + +
Sbjct: 3 IKIENLTHIYMEGTP----FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK 58
Query: 436 PLSGEILLDGNNI--KGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEIT 491
P SG+I++DG +I K + L +R+++GLV Q P LF TI ++I +G + + E
Sbjct: 59 PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEE 118
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
++ AM+ I L +E + +LSGGQK+R+AI+ + P IL+LDE T+ L
Sbjct: 119 IENRVKRAMN-IVGLD--YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175
Query: 552 DA----ESENSVQEALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELI 606
D E N ++E T ++V+H + + + AD I V+ K G+ E+
Sbjct: 176 DPKGRDEILNKIKELHKE--YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
Query: 607 SN 608
Sbjct: 234 KE 235
|
Length = 287 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-25
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 26/236 (11%)
Query: 382 IEFKDVSFCYPSRPDV---AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
I ++VS+ Y + A+FD L I G A +G +GSGKST++ L+ + P
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 439 GEILLDGNNI----KGLDLKWLRQQIGLVNQ--EPALFATTIRENILYGKDD--ATMEEI 490
G + +D I K D+K +R+++GLV Q E LF T+ +++ +G + + EE
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 491 TRAAKLSEAMSFIS-NLPER--FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
A+ A+ IS +L E+ FE LSGGQ +R+AI+ + P IL+LDE
Sbjct: 122 EALAREKLALVGISESLFEKNPFE---------LSGGQMRRVAIAGILAMEPKILVLDEP 172
Query: 548 TSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601
T+ LD + + ++ G T V+V H + + N AD + V++ K+V +G
Sbjct: 173 TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-25
Identities = 84/290 (28%), Positives = 138/290 (47%), Gaps = 40/290 (13%)
Query: 382 IEFKDVSFCY-PSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
I F+ V Y P A++D + IP+G VA++G +GSGKST++ + +P S
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYD-VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 439 GEILLDGNNI----KGLDLKWLRQQIGLVNQ--EPALFATTIRENILYGKDDATMEEITR 492
G + + I K LK LR+++G+V Q E LF T+ ++I +G + + E
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE-ED 120
Query: 493 AAKLSEAMSFISNLPERFETQVGERG-IQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
A + + M + LPE ++ R +LSGGQ +R+AI+ + P +L+LDE T+ L
Sbjct: 121 AKQKAREMIELVGLPE----ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 552 DAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
D + + E ++ G TTV+V H + AD I V+ + G+ E+ ++
Sbjct: 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236
Query: 609 PNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASF 658
P+ L + + P ++KF R L FG SF
Sbjct: 237 PDE----LEAIG--------------LDLPETVKFKRALEEK---FGISF 265
|
Length = 290 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-25
Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 27/227 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
++ + +Y + + D +L V+ G+ +G +G+GK+T + +IL P +G++
Sbjct: 1 LKTNDLTKTYGKKRVL---DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENI-----LYGKDGASEGEVIEAAK 1131
DG + + I + + P + + EN+ L G EV++
Sbjct: 58 TFDGKSYQ--KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVG 115
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
L ++ KV S G KQR+ IA A+L NP++L+LDE T+ LD +
Sbjct: 116 LKDSAK----------KKVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 1192 ERVVQQALQRLMRKRTTIIVA-HRLSTI-KNADQISVIESGKIIEQG 1236
+ +++ + L + T++++ H LS I K AD+I +I GK+IE+G
Sbjct: 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-25
Identities = 78/224 (34%), Positives = 119/224 (53%), Gaps = 14/224 (6%)
Query: 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-PTAG 1075
+EL+ + SYPS E V + K +L + AG+ +A+VG SGSGKST+++ IL D PT+G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLDKPTSG 63
Query: 1076 KVMVDGIDIKRLNLKSL----RKHIALVQQEPALFA-TSIYENILYGKDGASEGEVIEAA 1130
V G D+ L+ +L R+H + Q L + + +N+ + A +
Sbjct: 64 TYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV---EVPAVYAGLERKQ 120
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
+L A + L G +V + QLSGGQ+QRV+IARA++ +++L DE T ALD
Sbjct: 121 RLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSH 178
Query: 1191 SERVVQQALQRLM-RKRTTIIVAHRLSTIKNADQISVIESGKII 1233
S V L +L R T IIV H A+++ I G+I+
Sbjct: 179 SGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-25
Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 17/233 (7%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP--T 1073
G I + + +Y + + D +L++ AG+ +AL+G+SG GK+T+L I F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 1074 AGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYGKDGASEGEVIEAAKL 1132
G++ + D+ + ++ +AL+ Q ALF + +N+ +G + A ++
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 1133 ANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE 1192
A+A + G QLSGG +QR+AIARA+ P++LLLDE SALD
Sbjct: 119 ADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 1193 RVVQQALQRLMRK---RTTIIVAH-RLSTIKNADQISVIESGKIIEQGTHSSL 1241
+++ + L + T + V H + + AD+ +++ G++ G +L
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-25
Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 11/236 (4%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG-- 439
I+ + V+F Y + +D P +I A++G SG GKST++ + R + +SG
Sbjct: 5 IKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 440 ---EILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494
+LLD NI LD+ LR+++G+V Q+P F +I +N+ +G +R
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
++ E + L + + + + G+ LSGGQ+QR+ I+R + P ++L+DE SALD
Sbjct: 122 EVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181
Query: 555 SENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNP 609
S ++E + + T +V H + R +D + +V+ G E+ S P
Sbjct: 182 STMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237
|
Length = 251 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-25
Identities = 74/237 (31%), Positives = 127/237 (53%), Gaps = 20/237 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I ++ +FS+ S+ D NL++ G +A+VG +G GK++++S +L
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASE--GEVIEAAKLANA 1135
+V +R +A V Q +F ++ ENIL+G D SE I+ L +
Sbjct: 675 VV------------IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD 722
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE-SERV 1194
+ LP T++GERGV +SGGQKQRV++ARAV N +I + D+ SALD + +V
Sbjct: 723 ---LDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779
Query: 1195 VQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFK 1251
++ ++ +T ++V ++L + D+I ++ G I E+GT + L ++ G+ FK
Sbjct: 780 FDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS--GSLFK 834
|
Length = 1495 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 78/208 (37%), Positives = 113/208 (54%), Gaps = 29/208 (13%)
Query: 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461
+F L++ G+IVA++G SG+GKST+++LI F EP SG I ++ + GL ++ +
Sbjct: 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVS 73
Query: 462 LVNQEPALFA-TTIRENILYG-----KDDATMEE-ITRAAKLSEAMSFISNLPERFETQV 514
++ QE LFA T+R+NI G K +A +E + AA+ ++ LPE
Sbjct: 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE------ 127
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-----G 569
QLSGGQ+QR+A++R +V+ ILLLDE SALD +E L V
Sbjct: 128 -----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR---EEMLALVKQLCSERQ 179
Query: 570 RTTVVVAHRLS-TIRNADVIAVVQGRKI 596
RT ++V H LS A IAVV KI
Sbjct: 180 RTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 3e-25
Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 28/247 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
I+ KD+SF Y + + + +DI K+ A++G SG GKST I + R E
Sbjct: 8 IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 437 LSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
+ G + G NI +++ LR+QIG+V Q P F +I EN+ YG A ++
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
EI +A A L + + ++ + + LSGGQ+QR+ I+RA+ P +LL+DE
Sbjct: 125 EIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVV---QGR--KIVKTGSH 602
SALD + V+E + + T +V H + R +D A + R ++V+ G
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238
Query: 603 EELISNP 609
++ SNP
Sbjct: 239 TQIFSNP 245
|
Length = 259 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 19/247 (7%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +D+ + YP G++VAL+G +G+GKST+ +P SGE+
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 442 LLDGNNIKGLDLKWL---RQQIGLVNQEP--ALFATTIRENILYGKDDA--TMEEITRAA 494
L+ G IK D K L R+ +G+V Q P LFA T+ E++ +G + + EE+ +
Sbjct: 60 LIKGEPIK-YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
K EA+ + E FE + LSGGQK+R+AI+ + P I++LDE TS LD
Sbjct: 119 K--EALKAVGM--EGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171
Query: 555 SENSVQEAL-DRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSA 612
+ + + L D G T ++ H + + AD + V+ KI+K G+ +E+ S+ +
Sbjct: 172 GASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETI 231
Query: 613 YAALVQL 619
A ++L
Sbjct: 232 RKANLRL 238
|
Length = 275 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 15/233 (6%)
Query: 1014 VEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073
++ I++RGV+F Y + K+ N+ + A++G SG GKST+L + R D
Sbjct: 1 MDPKIKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIV 57
Query: 1074 AG-----KVMVDGIDIKRLNLK--SLRKHIALVQQEPALFATSIYENILYGKD--GASEG 1124
+G V++D +I NL +LRK + +V Q+P F SI++N+ +G G +
Sbjct: 58 SGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQ 117
Query: 1125 EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEAT 1184
++ + +AL + + + G+ LSGGQ+QR+ IAR + PE++L+DE
Sbjct: 118 SRLDEVVEKSLRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 1185 SALDVESERVVQQALQRLMRKRTTIIVAHRL-STIKNADQISVIESGKIIEQG 1236
SALD S +++ +Q L + T IV H + + +D + +G ++E G
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228
|
Length = 251 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 4e-25
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 19/192 (9%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDI--KRLNL 1089
K+ NL + + A++G SG GKST + + R + T GK++ +I K ++
Sbjct: 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100
Query: 1090 KSLRKHIALVQQEPALFATSIYENILYG------KDGASEGEVIEAAKLANAHSFISALP 1143
+ LR ++ +V Q+P F SIY+N+ YG KD + E++E + L A A+
Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKS-LRGA-----AIW 154
Query: 1144 EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM 1203
+ ++ + LSGGQ+QR+ IAR + P+++L+DE TSALD S V++ +Q L
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214
Query: 1204 RKRTTIIVAHRL 1215
+ + IIV H +
Sbjct: 215 KDYSIIIVTHNM 226
|
Length = 271 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 69/209 (33%), Positives = 114/209 (54%), Gaps = 9/209 (4%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--PTA---GKVMVDGIDI--KRLNL 1089
KD ++ A++G SG GKSTVL I R +D P+A GK+++D DI + ++
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 1090 KSLRKHIALVQQEPALF-ATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYST 1148
S+R+ + +V Q+P F A SIY+N++ G EA ++ + AL +
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 1149 KVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTT 1208
++ ++LSGGQ+QR+ IAR + PE++L+DE SALD S +++ ++ L K T
Sbjct: 141 RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTI 200
Query: 1209 IIVAHRL-STIKNADQISVIESGKIIEQG 1236
IIV H + + +D + G ++E G
Sbjct: 201 IIVTHNMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-25
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 17/230 (7%)
Query: 1015 EGTIELRGVHFSYPS-RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073
E IE+ + + E+ I K L V+ G+++A+VG SGSGKST+L+++ DP+
Sbjct: 4 ENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS 63
Query: 1074 AGKVMVDGIDIKRLN---LKSLR-KHIALVQQEPALFAT-SIYENILYGKDGASEGEVIE 1128
+G+V + G + +L+ +LR +H+ V Q L + EN+ + E
Sbjct: 64 SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS--- 120
Query: 1129 AAKLANAHSFISALPE--GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
A++ + AL E G ++ QLSGG++QRVA+ARA P++L DE T
Sbjct: 121 ----ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGN 176
Query: 1187 LDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKNADQISVIESGKIIE 1234
LD + + L L R+R T ++V H D+ + SG+++E
Sbjct: 177 LDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 83/245 (33%), Positives = 118/245 (48%), Gaps = 23/245 (9%)
Query: 1015 EGTIELRGVHFS-YPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-- 1071
G + +FS Y E V K N + + A++G SG GKST L I R D
Sbjct: 35 GGKPHVVAKNFSIYYGEFEAV--KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLI 92
Query: 1072 ---PTAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG------KDG 1120
T G +M DG DI K + LRK I +V Q+P F SI++NI YG D
Sbjct: 93 PSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDK 152
Query: 1121 ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLL 1180
E++E + L A AL + S ++ + + LSGGQ+QR+ +AR + PEILLL
Sbjct: 153 KQLEEIVEKS-LRKA-----ALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLL 206
Query: 1181 DEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHS 1239
DE TSALD ++ ++ +Q L T +IV H + +D G ++E +
Sbjct: 207 DEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTA 266
Query: 1240 SLVEN 1244
L N
Sbjct: 267 QLFTN 271
|
Length = 286 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-25
Identities = 81/333 (24%), Positives = 145/333 (43%), Gaps = 36/333 (10%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ +P GK+ ++G +GSGKST++ + +E G + W + I V
Sbjct: 681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAERSIAYVP 727
Query: 465 QEPALFATTIRENILY--GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
Q+ + T+R NIL+ +D A + + R ++L EA ++ L ET++GE+G+ LS
Sbjct: 728 QQAWIMNATVRGNILFFDEEDAARLADAVRVSQL-EAD--LAQLGGGLETEIGEKGVNLS 784
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAE-SENSVQEALDRVMVGRTTVVVAHRLST 581
GGQK R++++RA+ N + LLD+ SALDA E V+E + G+T V+ H++
Sbjct: 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV 844
Query: 582 IRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSI 641
+ AD + + ++ +GS + + YA L A++ + +
Sbjct: 845 VPRADYVVALGDGRVEFSGSSADFMRTS--LYATL------AAELKENKDSKEGDADAEV 896
Query: 642 KFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTY---- 697
G +++E G A + A + ++ + S P TY
Sbjct: 897 AEVDAAPGGAVDHEPP-VAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYL 955
Query: 698 GVCGTICAIIAGAQMPLFALGVSQALVAYYMDW 730
CG + A L V++ + W
Sbjct: 956 RFCGGLHAAGF----VLATFAVTELVTVSSGVW 984
|
Length = 1560 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-25
Identities = 68/236 (28%), Positives = 108/236 (45%), Gaps = 39/236 (16%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454
V D L + G++ AL+G +G+GKST++ ++ Y P SGEIL+DG + +
Sbjct: 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR 78
Query: 455 WLRQQ-IGLVNQEPALFAT-TIRENILYGK---------DDATMEEITRAAKLSEAMSFI 503
I V+QE +L ++ ENI G+ D M R E ++ +
Sbjct: 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL 133
Query: 504 SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD-AESENSVQEA 562
L +T VG+ LS Q+Q + I+RA+ + +L+LDE T+AL E+ E
Sbjct: 134 -GLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKET-----ER 183
Query: 563 LDRVMV-----GRTTVVVAHRLSTI-RNADVIAV------VQGRKIVKTGSHEELI 606
L ++ G + ++HRL + AD I V V R S +EL+
Sbjct: 184 LFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELV 239
|
Length = 500 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-25
Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 19/231 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++++ Y A+ D L++ G+I L+G +G+GK+T + ++ P SG
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAK 495
++G +I+ D K RQ +G Q ALF T+RE++ L G + ++E
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEE----- 113
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
E + + L ++ + LSGG K++++++ A++ PS+LLLDE TS LD S
Sbjct: 114 -VELLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
++ + + V GR+ ++ H + D IA++ K+ GS +EL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 82/225 (36%), Positives = 120/225 (53%), Gaps = 33/225 (14%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG-----EILLDG----NNIKGLDLKW 455
L++ G++VA++G SGSGK+T++ I +P +G +I +D + KGL ++
Sbjct: 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL-IRQ 82
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYG----KDDATMEEITRAAKLSEAMSFISNLPERF 510
LRQ +G V Q LF T+ ENI+ G K + E RA +L +
Sbjct: 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK----- 137
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-- 568
ET R LSGGQ+QR+AI+RA+ P ++L DE TSALD E V E L+ +
Sbjct: 138 ETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNTIRQLA 191
Query: 569 --GRTTVVVAHRLSTIRN-AD-VIAVVQGRKIVKTGSHEELISNP 609
RT V+V H +S R+ AD I + QGR IV+ G + L ++P
Sbjct: 192 QEKRTMVIVTHEMSFARDVADRAIFMDQGR-IVEQGPAKALFADP 235
|
Length = 250 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 20/220 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI--KGLDLKWLR 457
L IP ++ A++G SG GKST I + + L+GE+ +G+NI +DL LR
Sbjct: 33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
+ IG+V Q+ F +I +N+ YG K+ ++EI K + ++ + +R
Sbjct: 93 KNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI--VEKSLKDVALWDEVKDRLH 150
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
TQ + LSGGQ+QR+ I+RA+ NP +LL+DE TSALD S ++E + ++ T
Sbjct: 151 TQ----ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT 206
Query: 572 TVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNPN 610
V+V H + R +D A ++V+ ++ SNP+
Sbjct: 207 IVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 5e-25
Identities = 84/291 (28%), Positives = 143/291 (49%), Gaps = 18/291 (6%)
Query: 972 AMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELT---NVE-GTIELRGVHFSY 1027
M E V L + MAA V T VI V+ G++ GV Y
Sbjct: 1264 DMPELDEEVDALERRTGMAADV-----TGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRY 1318
Query: 1028 PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL 1087
+V+ + + ++ + + +VG++GSGKST+L +R + G++ V+G +I
Sbjct: 1319 REGLPLVL-RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY 1377
Query: 1088 NLKSLRKHIALVQQEPALFATSIYENILYGKD---GASEGEVIEAAKLANAHSFISALPE 1144
L+ LR+ +++ Q+P LF ++ +N+ D AS EV A +L +++ E
Sbjct: 1378 GLRELRRQFSMIPQDPVLFDGTVRQNV----DPFLEASSAEVWAALELVGLRERVASESE 1433
Query: 1145 GYSTKVGERGVQLSGGQKQRVAIARAVLKNPE-ILLLDEATSALDVESERVVQQALQRLM 1203
G ++V E G S GQ+Q + +ARA+LK +L+DEAT+ +D +R +Q +
Sbjct: 1434 GIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF 1493
Query: 1204 RKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLIN 1254
T I +AHRL T+ D+I V++ G + E G+ LV N + ++
Sbjct: 1494 SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVE 1544
|
Length = 1560 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 17/242 (7%)
Query: 1007 IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
+ E IEL+ V + I D + +V G+ A+VG +G+GK+T+LSL+
Sbjct: 21 KRHPIEINEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLL 77
Query: 1067 LRFYDPTAGKVMVDGIDIKRLNLKS-LRKHIALV---QQEPALFATSIYENILYGKDGAS 1122
+ P++G V + G + LRK I LV E ++ + +L G AS
Sbjct: 78 TGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF-FAS 136
Query: 1123 EG---EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILL 1179
G E + A LA A + L G LS G+++RV IARA++K+PE+L+
Sbjct: 137 IGIYQEDLTAEDLAAAQWLLELL--GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLI 194
Query: 1180 LDEATSALDVES-ERVVQQALQRLMRKRTT--IIVAHRLSTI-KNADQISVIESGKIIEQ 1235
LDE LD+ + E+++ + + + V H I +++ G+++ Q
Sbjct: 195 LDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ 254
Query: 1236 GT 1237
G
Sbjct: 255 GK 256
|
Length = 257 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 19/235 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTV---LSLILRFYDPTA 1074
I L V +SYP + ++ NL ++ G+ + ++G++GSGKST+ L+ +LR P
Sbjct: 2 IRLENVSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQK 56
Query: 1075 GKVMVDGIDIKRLN-LKSLRKHIALVQQEP--ALFATSIYENILYGKDGASEGEVIEAAK 1131
GKV+V GID + L+ +RK + +V Q P ++ E++ +G + IE K
Sbjct: 57 GKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPP-IEIRK 115
Query: 1132 LANAHSFISALPEGYSTKVGERGVQ-LSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
+ AL E K R + LSGGQ Q VA+A + PE L+ DE TS LD +
Sbjct: 116 RVD-----RALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
Query: 1191 SERVVQQALQRLMRKRTTII-VAHRLSTIKNADQISVIESGKIIEQGTHSSLVEN 1244
S V + +++L K TI+ + H L + +AD+I V++ GKI+ +G +++ +
Sbjct: 171 SGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 6e-25
Identities = 68/215 (31%), Positives = 116/215 (53%), Gaps = 8/215 (3%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF---YDP---TAGKVMVDGIDIKRLN 1088
I KD +K+ ++G SGSGKST+L ++ R YD GKV+ G DI +++
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1089 LKSLRKHIALVQQEPALFA-TSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYS 1147
LRK + +V Q+P F SIY+NI Y E E K+ L +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1148 TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRT 1207
++ QLSGGQ+QR+ IARA+ P++LL+DE TS +D+ + + +++ + L +
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIA 204
Query: 1208 TIIVAHRLSTI-KNADQISVIESGKIIEQGTHSSL 1241
+IV+H + + AD ++ + +G+++E G+ + +
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
Length = 257 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 6e-25
Identities = 76/234 (32%), Positives = 119/234 (50%), Gaps = 25/234 (10%)
Query: 1018 IELRGVHFSYPSRPE---VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
I+ + V + Y S E + D NL+V+ G+ + ++G++GSGKST+ + P+
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1075 GKVMVDGIDIKRL-NLKSLRKHIALVQQEP--ALFATSIYENILYGKD--GASEGE---- 1125
GKV VDG+D NL +R +V Q P + AT + E++ +G + G E
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 1126 VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATS 1185
V E+ K + + P LSGGQKQRVAIA + PE ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 1186 ALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKNADQISVIESGKIIEQGT 1237
LD R V ++ L +K T I++ H + AD+I V++SGK++ +GT
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 7e-25
Identities = 83/258 (32%), Positives = 131/258 (50%), Gaps = 30/258 (11%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+I + F++ +R + G +A+VGQ G GKS++LS +L D G
Sbjct: 636 SITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGK--DGASEGEVIEA-AKLA 1133
V + G +A V Q+ + S+ ENIL+GK + +V+EA A L
Sbjct: 695 VHMKG-------------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLP 741
Query: 1134 NAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES-- 1191
+ + LP G T++GE+GV LSGGQKQRV++ARAV N +I L D+ SA+D
Sbjct: 742 D----LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
Query: 1192 ---ERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGA 1248
E V+ + +++ +T I+V H +S + D I V+ GKI E G++ L++ DGA
Sbjct: 798 HIFEHVI--GPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ-RDGA 854
Query: 1249 YFK-LINLQQRQDPQHSQ 1265
+ + L + H +
Sbjct: 855 FAEFLRTYAPDEQQGHLE 872
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-25
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 33/235 (14%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA-----GKVMVDGIDIKR--LNL 1089
K ++ + AL+G SG GKST L + R D G V +DG DI + +NL
Sbjct: 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121
Query: 1090 KSLRKHIALVQQEPALFATSIYENILYG------------------KDGASEGEVIEAAK 1131
LRK + +V Q P F SI ENI YG D +E E++E +
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS- 180
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
L A AL + + ++ + + LSGGQ+QR+ IAR + +PE++L+DE SALD +
Sbjct: 181 LRQA-----ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235
Query: 1192 ERVVQQALQRLMRKRTTIIVAHRL-STIKNADQISV-IESGKIIEQGTHSSLVEN 1244
++ ++ L + T ++V H + + +DQ +V + G+++E + EN
Sbjct: 236 TSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFEN 290
|
Length = 305 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 7e-25
Identities = 69/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%)
Query: 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE------PLSG 439
++S Y D AI + IP I ++G SGSGKST++ ++ R E + G
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSE 498
++L G +I +D LR+++G+V Q+P F +I +NI Y ++E K+ E
Sbjct: 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE 131
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
L + ++ QLSGGQ+QR+ I+RA+ P +LL+DE TS +D + +
Sbjct: 132 ECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQA 191
Query: 559 VQEALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNS 611
+++ + + V+V+H + R AD +A + ++V+ GS E+ ++P +
Sbjct: 192 IEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKN 245
|
Length = 257 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-25
Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 22/229 (9%)
Query: 1018 IELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I + + + V + V+ G+ L+G +G+GK+T L ++ +P AG
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENI-----LYGKDG-ASEGEVIEA 1129
VDG D+ + R+ + V L+ + EN+ LYG G + E
Sbjct: 62 ATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
A + G+ST G +Q+VAIARA++ +P +LLLDE T+ LDV
Sbjct: 121 ADRLGMEELLDRRVGGFST-----------GMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 1190 ESERVVQQALQRLMRKRTTIIVA-HRLSTIKN-ADQISVIESGKIIEQG 1236
+ R +++ +++L I+ + H + ++ D++ V+ G+++ +G
Sbjct: 170 MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 25/243 (10%)
Query: 1014 VEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-- 1071
+E I + VH SY +L + AL+G SG GKST L + R D
Sbjct: 1 MENIISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI 57
Query: 1072 ---PTAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYGKD--GASEG 1124
G++ +G +I +++L LRK + +V Q+P F S+Y+N+ YG G +
Sbjct: 58 ENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDK 117
Query: 1125 EVI-----EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILL 1179
E+I E+ K A A+ + + SGGQ+QR+ IARA+ P+++L
Sbjct: 118 ELIDQRVEESLKQA-------AIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVL 170
Query: 1180 LDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTI-KNADQISVIESGKIIEQGTH 1238
LDE TSALD S +++ L L + T I+V H L + +DQ + + +G +IE G
Sbjct: 171 LDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPT 230
Query: 1239 SSL 1241
+
Sbjct: 231 EEM 233
|
Length = 251 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 8e-25
Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 20/243 (8%)
Query: 1017 TIELRGVHFSY-PSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
+I+ V + Y P P E + + ++ G +ALVG +GSGKST++ P++
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 1075 GKVMVDGIDIK----RLNLKSLRKHIALVQQ--EPALFATSIYENILYGKD--GASEGEV 1126
G + + G I NLK LRK ++LV Q E LF ++ +++ +G G SE E
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERG-VQLSGGQKQRVAIARAVLKNPEILLLDEATS 1185
E A ++ + G S + + +LSGGQ +RVAIA + PEIL LDE +
Sbjct: 122 KEKAL-----KWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA 174
Query: 1186 ALDVESERVVQQALQRLMRK-RTTIIVAHRLSTI-KNADQISVIESGKIIEQGTHSSLVE 1243
LD E + + Q + + T I+V H + + + AD + V+E GK+I+ + +
Sbjct: 175 GLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234
Query: 1244 NED 1246
+++
Sbjct: 235 DKE 237
|
Length = 287 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 21/225 (9%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE++ + F Y E D + V+ G+ ++++G +GSGKST + LI + +G++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYG--KDGASEGE----VIEA 1129
++DG + N+ +R I +V Q P ++ +++ +G G E V EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
+L F P +LSGGQKQRVAIA AV P+I++LDEATS LD
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1190 ESERVVQQALQRLMRKR--TTIIVAHRLSTIKNADQISVIESGKI 1232
E + + ++ + T I + H L + +D++ V+++G++
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQV 218
|
Length = 279 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 107 bits (267), Expect = 1e-24
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 26/230 (11%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKWL 456
+ D L+I AG+++AL+G SG GK+T++ I F + L+G I + ++
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT--HAPPH 77
Query: 457 RQQIGLVNQEPALFA-TTIRENILYGKDDATM------EEITRAAKLSEAMSFISNLPER 509
++ + L+ Q ALF + +N+ +G M E + A KL ++LP
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA- 136
Query: 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE---ALDRV 566
QLSGG +QRIAI+RAI P +LLLDE SALDA +++E AL
Sbjct: 137 ----------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186
Query: 567 MVGRTTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ T + V H + + AD +++ ++ G + L P +AA
Sbjct: 187 LPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAA 236
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+++ ++++Y + K N+ ++ G+ A++G +G+GKST+ + P++G++
Sbjct: 6 LKVEELNYNYSDGTHAL--KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1078 MVDG--IDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYG--KDGASEGEVIEAAK 1131
+ DG ID R L LR+ + +V Q+P LF+ S+Y+++ +G E EV +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
A + I L + + LS GQK+RVAIA ++ P++L+LDE T+ LD
Sbjct: 124 NALKRTGIEHLKDKPTH-------CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 1192 ERVVQQALQRLMRKR--TTIIVAHRLSTIK-NADQISVIESGKIIEQGT 1237
+ + L + ++ T II H + + D + V++ G++I QG
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
|
Length = 283 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 16/201 (7%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ + + SY +P +D +L + +G+ + ++G SG GK+T+L+LI F P+ G
Sbjct: 3 MLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYGKDGASEGEVIEAAKLANA 1135
+ ++G +R+ + +V Q AL ++ +N+ +G + +A + A
Sbjct: 62 IQLNG---RRIEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIA 113
Query: 1136 HSFISALP-EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
H ++ + EG K QLSGG +QRV IARA+ P++LLLDE ALD +
Sbjct: 114 HQMLALVGLEGAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170
Query: 1195 VQQALQRLMRKR--TTIIVAH 1213
+Q+ L L ++ +++ H
Sbjct: 171 MQELLLDLWQETGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-24
Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 19/223 (8%)
Query: 1022 GVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081
G+ FS S + K+ + K+ G+ +A+ G +GSGKS++L +I+ +P+ GK+ G
Sbjct: 428 GLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG 487
Query: 1082 IDIKRLNLKSLRKHIALVQQEPALFATSIYENILYG--KDGASEGEVIEAAKLANAHSFI 1139
I+ Q + +I +NI++G D VI+A +L I
Sbjct: 488 -------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEED---I 531
Query: 1140 SALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER-VVQQA 1198
+ PE T +GE G+ LSGGQ+ R+++ARAV K+ ++ LLD + LDV +E+ + +
Sbjct: 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591
Query: 1199 LQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSL 1241
L +LM +T I+V +L +K AD+I ++ G GT S L
Sbjct: 592 LCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 25/241 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI---LRFYDPTA 1074
+E + V F+YP + + D + + G AL+G +GSGKST+ LI L D
Sbjct: 6 VEFKHVSFTYPDSKKPAL-NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1075 GKVMVDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYGKD--GASEGEVIEAA 1130
K+ VDGI + + +R+ + +V Q P ++ +++ +G + E+I+
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 1131 KLANAH----SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
+ A +I + P LSGGQKQRVAIA + P+I++LDE+TS
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 1187 LDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVEN 1244
LD + + + +++L +K T I + H + ADQ+ V++ GK++ QG+ +
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 1245 E 1245
Sbjct: 234 V 234
|
Length = 282 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 2e-24
Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 6/170 (3%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
D I + L + AG+ +A+ G SG GKST++ ++ P SG +L +G ++ L +
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 456 LRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVG 515
RQQ+ Q PALF T+ +N+++ RAA A+ ++ ++ +
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIF-PWQIRNRRPDRAA----ALDLLARF-ALPDSILT 128
Query: 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR 565
+ +LSGG+KQRIA+ R + P ILLLDE TSALD ++ +++E + R
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHR 178
|
Length = 223 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 23/242 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----P 436
I DV Y + D LD +I AL+G SG GKST + + R +
Sbjct: 6 ITSSDVHLFYGKFEALKGID---LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 437 LSGEILLDGNNIKG--LDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATME 488
++G + L G NI D+ LR+Q+G+V Q+P F +I EN++YG KD A ++
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD 122
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
E + L +A + + + + E + LSGGQ+QR+ I+R + P ++LLDE T
Sbjct: 123 EAVETS-LKQAAIW-----DEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELIS 607
SALD S ++ L + T ++V H + R +D A +++ +++
Sbjct: 177 SALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236
Query: 608 NP 609
NP
Sbjct: 237 NP 238
|
Length = 252 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 33/247 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---- 437
+E KD+S Y + V + +DI + AL+G SG GKST + I R + +
Sbjct: 22 LEVKDLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 438 -SGEILLDGNNIKG--LDLKWLRQQIGLVNQEPALFATTIRENILYGK-----------D 483
GEIL +G NI +++ LR++IG+V Q+P F +I NI + D
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 484 DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543
+ E +T+AA L + + ++ + LSGGQ+QR+ I+R + P++LL
Sbjct: 139 EIVEESLTKAA-----------LWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLL 187
Query: 544 LDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSH 602
LDE SALD S ++E + + + ++V H + +R +D A +V+
Sbjct: 188 LDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247
Query: 603 EELISNP 609
E++ ++P
Sbjct: 248 EQIFTSP 254
|
Length = 268 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 100 bits (253), Expect = 2e-24
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 63/220 (28%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ELRG+ + V +L VR G+ AL+G++G+GKST++ ++ Y P +G++
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1078 MVDGIDIKRLNLKSLRKH-IALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAH 1136
+VDG ++ + + R+ IA+V Q
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQLS--------------------------------- 84
Query: 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV-ESERVV 1195
VGER Q V IARA+ +N +L+LDE T+AL E ER+
Sbjct: 85 -------------VGER---------QMVEIARALARNARLLILDEPTAALTPAEVERLF 122
Query: 1196 QQALQRLMRKRTTII-VAHRLSTIKN-ADQISVIESGKII 1233
+ ++RL + +I ++HRL + AD+++V+ G+++
Sbjct: 123 KV-IRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 19/203 (9%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI----KRLNLKSLR 1093
D N + A AL G SGSGK++++++I P G++ ++G + K + L +
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 1094 KHIALVQQEPALFA-TSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGE 1152
+ I V Q+ LF ++ N+ YG + + + L I L + Y
Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG----IEHLLDRYPGT--- 128
Query: 1153 RGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK-RTTII- 1210
LSGG+KQRVAI RA+L PE+LL+DE ++LD+ +R + L+RL + I+
Sbjct: 129 ----LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184
Query: 1211 VAHRLSTIKN-ADQISVIESGKI 1232
V+H L + AD++ V+E+GK+
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKV 207
|
Length = 352 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 77/251 (30%), Positives = 122/251 (48%), Gaps = 28/251 (11%)
Query: 1009 EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068
E + + T LR V F P R + +L AGK L+G +GSGKST+L ++ R
Sbjct: 3 EYTNHSDTTFALRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR 59
Query: 1069 FYDPTAGKVMVDGIDIKRLNLKSLRKHIA-LVQQEPALFATSIYENILYGKD-------- 1119
P+ G++++D ++ + K+ + +A L QQ PA ++ E + G+
Sbjct: 60 HQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGR 119
Query: 1120 -GASEGE-VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177
GA++ E V EA L L + LSGG++QR IA V ++
Sbjct: 120 FGAADREKVEEAISLVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRC 168
Query: 1178 LLLDEATSALDVESERVVQQALQRLMRKR--TTIIVAHRLS-TIKNADQISVIESGKIIE 1234
LLLDE TSALD+ + V + RL ++R T I V H ++ + D + + G++I
Sbjct: 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228
Query: 1235 QGTHSSLVENE 1245
QGT + L+ E
Sbjct: 229 QGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 14/205 (6%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--PTA-- 1074
E+ GV Y +V D +LK+ A K +A +G SG GKST+L R D P A
Sbjct: 22 EVEGVKVFYGGFLALV---DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKV 78
Query: 1075 -GKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG-KDGASEGEVIEAA 1130
G+++ +I ++N LR+ + +V Q P F SIYENI + + +G + E
Sbjct: 79 EGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDE-- 136
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
L +A+ E K+ E+G LSGGQ+QR+ IARA+ P++LL+DE SALD
Sbjct: 137 -LVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPI 195
Query: 1191 SERVVQQALQRLMRKRTTIIVAHRL 1215
S R V++ L + T I+V H +
Sbjct: 196 STRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-24
Identities = 81/289 (28%), Positives = 133/289 (46%), Gaps = 41/289 (14%)
Query: 339 APDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVA 398
A + + A+ A I+ ER +S H+ K+ S Y +
Sbjct: 7 AKETSKSAPAETATRDIYLPPERKKVSGGGKP----------HVVAKNFSIYYG---EFE 53
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--L 451
K DI + + A++G SG GKST + I R + + +G ++ DG +I G
Sbjct: 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 452 DLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATMEEIT----RAAKLSEAMS 501
D LR++IG+V Q+P F +I +NI YG D +EEI R A L + +S
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS 173
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
+R + + + LSGGQ+QR+ ++R + P ILLLDE TSALD ++ +++
Sbjct: 174 ------DRLD----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED 223
Query: 562 ALDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNP 609
+ + T ++V H + R +D +V+ +L +NP
Sbjct: 224 LIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNP 272
|
Length = 286 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 5e-24
Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 20/237 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ + Y R V +L V+ G+ + L+G +G+GK+T +I+ P +GK+
Sbjct: 1 LRAENLSKRYGKRKVV---NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 1078 MVDGIDIKRLNL-KSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANA 1135
++DG DI +L + K R I + QE ++F ++ ENIL V+E L+
Sbjct: 58 LLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENIL---------AVLEIRGLSKK 108
Query: 1136 --HSFISALPEGYS-TKVGER-GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
+ L E + T + + LSGG+++RV IARA+ NP+ LLLDE + +D +
Sbjct: 109 EREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168
Query: 1192 ERVVQQALQRLMRKRTTI-IVAHRLS-TIKNADQISVIESGKIIEQGTHSSLVENED 1246
+ +Q+ ++ L + + I H + T+ D+ +I GK++ +GT + NE
Sbjct: 169 VQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-24
Identities = 76/235 (32%), Positives = 125/235 (53%), Gaps = 28/235 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ L+ + + S VI + NL ++ G + L+G SG GK+TVL L+ PT G++
Sbjct: 7 VVLKNITKRFGS--NTVI-DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG--KDGASEGE----VIEAA 1130
+DG D+ +++ ++ I +V Q ALF S+ EN+ YG G + E V EA
Sbjct: 64 FIDGEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEAL 121
Query: 1131 KLANAHSFISALPEGYSTKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
+L + F +R V Q+SGGQ+QRVA+ARA++ P++LL DE S LD
Sbjct: 122 ELVDLAGF------------EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
Query: 1190 ESERVVQQALQRLMRKR--TTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSL 1241
R +++ ++ L ++ T++ V H S +D + V+ GKI++ G+ L
Sbjct: 170 NLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-24
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 10/179 (5%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL---DLKWLRQQIG 461
L+I G+IV L G SGSGK+T+++LI G + + G + G +L LR+ IG
Sbjct: 26 LEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIG 85
Query: 462 LVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
+ Q L T R+N+ + A + + AM L + +
Sbjct: 86 YIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH----N 141
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAH 577
LSGGQKQR+AI+RA+V P ++L DE T+ALD++S V E + ++ G T ++V H
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 68/213 (31%), Positives = 113/213 (53%), Gaps = 25/213 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--PTA- 1074
I+++ ++ Y S V +D NL + A +G SG GKSTVL + R ++ P A
Sbjct: 5 IDVKDLNIYYGSFHAV---EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 1075 --GKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFAT-SIYENILYG------KDGASE 1123
G+V++DG D+ ++ ++R+ I +V Q P F T SI +N++ G ++
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 1124 GEVIEAA-KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDE 1182
E++E + + AN L ++ + G LSGGQ+QR+ IARA+ P++LL+DE
Sbjct: 122 DELVEKSLRGAN-------LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174
Query: 1183 ATSALDVESERVVQQALQRLMRKRTTIIVAHRL 1215
SALD S ++ + L + T +IV H +
Sbjct: 175 PCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207
|
Length = 258 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-23
Identities = 59/226 (26%), Positives = 116/226 (51%), Gaps = 22/226 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++++ Y + D L + G + L+G +G+GK+T++ ++ P SG I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRE-----NILYGKDDATMEEITRAAK 495
+DG ++ + LR++IG + QE ++ T+RE L G ++ R +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKA--RVDE 113
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ E + NL +R + ++G LSGG ++R+ I++A+V +PSIL++DE T+ LD E
Sbjct: 114 VLELV----NLGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600
+ L + R ++ H + + + + +AV+ K+V G
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 82/239 (34%), Positives = 120/239 (50%), Gaps = 58/239 (24%)
Query: 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----------KGLD---LKW 455
AG +++++G SGSGKST + I +P +G I ++G I K D L+
Sbjct: 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYG--------KDDATMEEITRAAKLSEAMSFISNL 506
LR ++G+V Q L++ T+ EN++ K +A I RA
Sbjct: 91 LRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEA----IERA------------- 133
Query: 507 PERFETQVG--ERG----IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
E++ +VG E+ LSGGQ+QR+AI+RA+ P ++L DE TSALD E V
Sbjct: 134 -EKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---LVG 189
Query: 561 EALDRVM-----VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHEELISNPNSA 612
E L +VM GRT VVV H + R+ + VI + QG KI + G E++ NP S
Sbjct: 190 EVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG-KIEEEGPPEQVFGNPQSP 246
|
Length = 256 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 22/226 (9%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
+ L++ G+IV L+G +G+GK+T+ +LI FY+P SG ++ G +I GL ++
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARL 79
Query: 461 GLVN--QEPALFAT-TIRENILYGKDDATMEEITRAAKLS---------EAMSFIS--NL 506
G+ Q LF T+ EN+ G + A + L
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
E + G LS GQ++R+ I+RA+ P +LLLDE + L+ E + E + +
Sbjct: 140 GELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 567 --MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
G T +++ H + + AD I V+ +++ G+ EE+ +NP
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
|
Length = 250 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-23
Identities = 61/200 (30%), Positives = 110/200 (55%), Gaps = 15/200 (7%)
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR 1093
V+ +D ++ V GK ++G +GSGKST+L +L ++ + G+V +
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------- 720
Query: 1094 KHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153
+ IA V Q+ + ++ NIL+ D + +A +++ + ++ L G T++GE+
Sbjct: 721 RSIAYVPQQAWIMNATVRGNILF-FDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEK 779
Query: 1154 GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE-SERVVQQALQRLMRKRTTIIVA 1212
GV LSGGQK RV++ARAV N ++ LLD+ SALD ERVV++ + +T ++
Sbjct: 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLAT 839
Query: 1213 HRLSTIKNADQISVIESGKI 1232
H++ + AD + + G++
Sbjct: 840 HQVHVVPRADYVVALGDGRV 859
|
Length = 1560 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Query: 387 VSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN 446
+S Y +P + + L I +G++V ++G SG GK+T+++LI F P G I L+G
Sbjct: 9 LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 447 NIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISN 505
I+G + G+V Q AL + +N+ +G +E+ R + ++ +
Sbjct: 68 RIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVG- 121
Query: 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
E E + QLSGG +QR+ I+RA+ P +LLLDE ALDA + +QE L
Sbjct: 122 -LEGAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
|
Length = 259 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 19/222 (8%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDI--KRLN 1088
K+ ++++ AL+G SG GKST + + R D GKV ++G DI ++
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 1089 LKSLRKHIALVQQEPALFATSIYENILYGK--DGASE---GEVIEAAKLANAHSFISALP 1143
+ LRK++ +V Q+P F SIY+N+ YG GA++ V+E A + +AL
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRS------AALW 141
Query: 1144 EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM 1203
+ S ++ + LSGGQ+QR+ IAR + P+I+L DE TSALD S ++ + L
Sbjct: 142 DETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK 201
Query: 1204 RKRTTIIVAHRL-STIKNADQISVIESGKIIEQGTHSSLVEN 1244
+ T +IV H + + +D G++IE G + N
Sbjct: 202 KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243
|
Length = 258 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-23
Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 30/246 (12%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----- 435
I+ ++++ Y + + IP + AL+G SG GKST I + R +
Sbjct: 12 QIKVENLNLWYGEK---QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 436 PLSGEILLDGNNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYG--------KD-D 484
+ G++ ++G +I +D+ LR+ +G+V Q+P F +I +N+ YG KD D
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD 128
Query: 485 ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544
+E R+A L + S +R ++ + LSGGQ+QR+ I+R + P I+L
Sbjct: 129 GVVENALRSAALWDETS------DRLKSP----ALSLSGGQQQRLCIARTLAVKPKIILF 178
Query: 545 DEATSALDAESENSVQEALDRVMVGRTTVVVAHRL-STIRNADVIAVVQGRKIVKTGSHE 603
DE TSALD S +++ + + T V+V H + R +D ++++ G
Sbjct: 179 DEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238
Query: 604 ELISNP 609
++ NP
Sbjct: 239 QIFHNP 244
|
Length = 258 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 9/230 (3%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +++ F Y DV + I G+ V+++G +GSGKST LI+ +E G++
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEA 499
+DG + ++ LR++IG+V Q P T+ +++ +G ++ + ++ EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+ ++ L F+T+ R LSGGQKQR+A++ I P I++LDE+TS LD +
Sbjct: 125 LLAVNMLD--FKTREPAR---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179
Query: 560 QEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
+ + T + + H L ++D I V++ +I+K + EL +
Sbjct: 180 MRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 2e-23
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 14/228 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I K+ F + S+ L+IP G +VA+VGG+G GK+++IS +
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
++ +R + V Q +F T+RENIL+G D + E RA ++
Sbjct: 675 VV------------IRGSVAYVPQVSWIFNATVRENILFGSDFES-ERYWRAIDVTALQH 721
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-Q 560
+ LP R T++GERG+ +SGGQKQR++++RA+ N I + D+ SALDA + V
Sbjct: 722 DLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
+ + G+T V+V ++L + D I +V I + G+ EL +
Sbjct: 782 SCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829
|
Length = 1495 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 2e-23
Identities = 67/209 (32%), Positives = 109/209 (52%), Gaps = 13/209 (6%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454
+A + IP G++ +VG G GKS+++ I + L G++ N +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 455 WL----RQQIGLVNQEPALFATTIRENILYGK--DDATMEEITRAAKLSEAMSFISNLPE 508
R + Q+P L T+ ENI +G + + +T A L I LP
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPD---IDLLPF 128
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE-SENSVQEALDRVM 567
+T++GERGI LSGGQ+QRI ++RA+ +N +I+ LD+ SALD S++ +QE + + +
Sbjct: 129 GDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188
Query: 568 VG--RTTVVVAHRLSTIRNAD-VIAVVQG 593
RT V+V H+L + +AD +IA+ G
Sbjct: 189 QDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-23
Identities = 77/266 (28%), Positives = 126/266 (47%), Gaps = 36/266 (13%)
Query: 382 IEFKDVSFCYPS-----RPDVAIF---DKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
+E +D+ +P R V D L + G+ + LVG SGSGKST+ + R
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 434 YEPLSGEILLDGNNIKGLD---LKWLRQQIGLVNQEPALFAT-----TIRENI-----LY 480
GEI DG +I GL ++ LR+++ +V Q+P + + T+ + I ++
Sbjct: 337 IPS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVH 393
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
+ E R + E + R+ + SGGQ+QRIAI+RA++ P
Sbjct: 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPHE-------FSGGQRQRIAIARALILKPE 446
Query: 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597
++LLDE TSALD + V + L + G + + ++H L+ +R + V++ KIV
Sbjct: 447 LILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV 506
Query: 598 KTGSHEELISNPNSAYAALVQLQEAA 623
+ G E + +NP Y L AA
Sbjct: 507 EQGPTEAVFANPQHEYTR--ALLAAA 530
|
Length = 534 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 2e-23
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL---D 452
D + L I G+IVA+VG SGSGKST++ L+ P SGE+L +G ++ L +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 453 LKWLR-QQIGLVNQEPALFAT-TIRENI----LYGKDDATMEEITRAAKLSEAMSFISNL 506
LR +++G + Q L T EN+ L GK E RA ++ E + L
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVK-EAKERAYEMLEKV----GL 131
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
R + E LSGG++QR+AI+RA+V PS++L DE T LD + + + + +
Sbjct: 132 EHRINHRPSE----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 567 MVGRTT--VVVAHRLSTIRNADVIAVVQGRKIVK 598
T +VV H L + D + ++ ++
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 22/243 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +D+ F Y L IP G AL+G +G+GKST++ + Y P G +
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGK-----DDATMEEITRAA 494
+ G + + KW+R ++GLV Q+P +F++T+ +++ +G D +E A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+ M + P LS GQK+R+AI+ + +P +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 555 SENSVQEALDRVMVGRTTVVVA-HRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
+ ++ E LDR+ TV+VA H + AD + V++ +++ G + L+++ +
Sbjct: 173 GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD-KSLLTDEDIV 231
Query: 613 YAA 615
A
Sbjct: 232 EQA 234
|
Length = 274 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 26/201 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVI-------SLIERFYEPLSGEILLDGNNI--KGLDLKW 455
LDIP +I A +G SG GKST++ LI F + G++ G N+ +D
Sbjct: 31 LDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR--VEGKVTFHGKNLYAPDVDPVE 88
Query: 456 LRQQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPER 509
+R++IG+V Q+P F +I +NI YG K D M+E+ + L +A L +
Sbjct: 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGD--MDELVERS-LRQAA-----LWDE 140
Query: 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569
+ ++ + G+ LSGGQ+QR+ I+RAI P ++L+DE SALD S ++E + +
Sbjct: 141 VKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ 200
Query: 570 RTTVVVAHRL-STIRNADVIA 589
T ++V H + R +D+ A
Sbjct: 201 YTIIIVTHNMQQAARVSDMTA 221
|
Length = 264 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 78/252 (30%), Positives = 122/252 (48%), Gaps = 42/252 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ D+++ Y P +F L + G+ VA++G SG+GKST+++LI F P SG +
Sbjct: 2 LKLTDITWLYHHLPM-----RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL 56
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI---------LYGKDDATMEEIT 491
L+G + R+ + ++ QE LF+ T+ +NI L + I
Sbjct: 57 TLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIA 114
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
R + + ++ LP QLSGGQ+QR+A++R +V+ ILLLDE SAL
Sbjct: 115 RQMGIED---LLARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 552 DAESENSVQEALDRVMVGR--TTVVVAHRLSTIRNADVIA-----VVQGRKIVKTGSHEE 604
D + + +V R T ++V+H L +A IA V GR I G +E
Sbjct: 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLE---DAARIAPRSLVVADGR-IAWDGPTDE 216
Query: 605 LISNPNSAYAAL 616
L+S SA A L
Sbjct: 217 LLSGKASASALL 228
|
Length = 232 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 11/215 (5%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG-----KVMVDGIDI--KRLNL 1089
+D ++ +R + +G SG GKSTVL + R D G V G D+ K ++
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 1090 KSLRKHIALVQQEPALFATSIYENILYG-KDGASEGEVIEAAKLANAHSFISALPEGYST 1148
+R++I +V Q+P F+ SI++N+ +G + +G++ + K A + AL +
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA---ALWDEVKD 141
Query: 1149 KVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTT 1208
K+ G+ LSGGQ+QR+ IARA+ PE+LLLDE SALD + R V++ + L + T
Sbjct: 142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTI 201
Query: 1209 IIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243
+V H + + S I + LVE
Sbjct: 202 ALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236
|
Length = 261 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 69/240 (28%), Positives = 129/240 (53%), Gaps = 24/240 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I ++VS Y ++ + D LDIP G I +++G +G+GKST++S++ R + SGEI
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG-----KDDATMEEITRAAK 495
+DG + K L +++ ++ QE + + T+R+ + +G + T E+
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKED---RRI 115
Query: 496 LSEAMSF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
++EA+ + + +L +R+ +LSGGQ+QR I+ + ++ +LLDE + LD
Sbjct: 116 INEAIEYLHLEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168
Query: 554 ESENSVQEALDRVM--VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPN 610
+ + + L R+ +G+T VVV H ++ +D I ++ K+VK GS +E+I
Sbjct: 169 KHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228
|
Length = 252 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 16/236 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +D+ CY + P +A++G +G+GKST+ +P SG +
Sbjct: 4 IETRDL--CYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSEA 499
L+ G I +++ +R+ +GLV Q P +F+ T+ ++I +G + ++E T A ++S A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 500 MSF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+ + L +R LSGG+K+R+AI+ I P +L+LDE T+ LD +
Sbjct: 122 LHMLGLEELRDRVPH-------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 558 SVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610
+ + L+ + G T + H+L + AD I V+ +IV G+ EE+ P+
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI-- 448
D + + I I AL+G SG GKST + + R + + G ++ +G NI
Sbjct: 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78
Query: 449 KGLDLKWLRQQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSF 502
D+ LR++IG+V Q P F +I +NI YG KD ++EI + A
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSA--- 135
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
L + ++ + LSGGQ+QR+ I+R + P+++L+DE TSALD S ++E
Sbjct: 136 ---LWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 563 LDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNS 611
+ + T ++V H + R +D A I + S +EL NP +
Sbjct: 193 IINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKN 242
|
Length = 254 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 3e-23
Identities = 65/214 (30%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI--KGLDLKWLR 457
LD+ G + AL+G SG GK+T + I R ++ ++G ILLDG +I +D +R
Sbjct: 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84
Query: 458 QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
+++G+V Q+P F T ++ +N++ G A + + +++E + L + + ++
Sbjct: 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKT 144
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVA 576
LSGGQ+QR+ I+RA+ P ILL+DE TSALD S +++ + + T ++V
Sbjct: 145 PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVT 204
Query: 577 HRL-STIRNADVIAVVQGRKIVKTGSHEELISNP 609
H + R +D + +V+ G ++L +NP
Sbjct: 205 HNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
|
Length = 252 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 68/219 (31%), Positives = 108/219 (49%), Gaps = 20/219 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNI--KGLDLKWLR 457
LDI ++ A++G SG GKST I + R E + +G+IL NI K ++ LR
Sbjct: 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104
Query: 458 QQIGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFE 511
+G+V Q+P F +I +N+ YG KD T++EI K + L +R
Sbjct: 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI--VEKSLRGAAIWDELKDRLH 162
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
LSGGQ+QR+ I+R + P ++L+DE TSALD S V+E + + +
Sbjct: 163 DN----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS 218
Query: 572 TVVVAHRL-STIRNADVIAVVQGRKIVKTGSHEELISNP 609
++V H + R +D A + + +++ SNP
Sbjct: 219 IIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257
|
Length = 271 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 25/234 (10%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PT 1073
E+ ++F Y K+ N+ V + AL+G SG GKST L R +D
Sbjct: 18 EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 1074 AGKVMV--DGIDI--KRLNLKSLRKHIALVQQEPALFATSIYENILYG------KDGASE 1123
G++++ D ++I ++ +R I++V Q+P F SI+EN+ YG K +
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 1124 GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183
E +E A L NA AL + ++G+ LSGGQ+QR+ IARA+ +PEILL DE
Sbjct: 135 EERVENA-LRNA-----ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP 188
Query: 1184 TSALDVESERVVQQALQRLMRKRTTIIVAHRL-STIKNADQISVIESGKIIEQG 1236
TSALD + +++ + L K T +IV H + + +D + + G++IE G
Sbjct: 189 TSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242
|
Length = 265 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 19/229 (8%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078
LR S+ S +I ++ G L+G +GSGKST+L L+ P AG V
Sbjct: 1 GLRLSRVSW-SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD 59
Query: 1079 VDGIDIKRLNLKSLRKHIALVQQE-PALFATSIYENILYGKD------GASEGEVIEAAK 1131
+ G+D+ L+ ++ + +ALV+Q+ ++ + + G+
Sbjct: 60 LAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVD 119
Query: 1132 LANAHSFISALPE-GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
A A + +S L + ST LSGG++QRV +ARA+ + P++LLLDE T+ LDV
Sbjct: 120 RALARTELSHLADRDMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171
Query: 1191 SERVVQQALQRLMRKRTTIIVA-HRLS-TIKNADQISVIESGKIIEQGT 1237
++ ++ L T++ A H L+ D + V++ G+++ G
Sbjct: 172 AQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 26/242 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ + VSF +R IFD L +P GKI A++G SG GK+T++ LI P GEI
Sbjct: 8 VDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 442 LLDGNNIKGLDLKWL---RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLS 497
L DG NI + L R+++ ++ Q ALF + +N+ Y + E T+ L
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY-----PLREHTQ---LP 116
Query: 498 EAMSFISNLPERFETQVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
+ S + + E VG RG +LSGG +R A++RAI P +++ DE
Sbjct: 117 APL-LHSTVMMKLEA-VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 552 DAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608
D + + + + + +G T VVV+H + + + AD +V +KIV GS + L +N
Sbjct: 175 DPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234
Query: 609 PN 610
P+
Sbjct: 235 PD 236
|
Length = 269 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 24/216 (11%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK 1094
I D +L + GK AL+G +G GKST+L R P +G V + I L+ + L +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 1095 HIALV-QQEPALFATSIYENILYGKD------GASEGEVIEAAKLANAHSFISALPEGYS 1147
+AL+ Q ++ E + YG+ G E A + I+ L +
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD--- 133
Query: 1148 TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK-- 1205
R LSGGQ+QR +A + ++ ++LLDE T+ LD+ Q L RLMR+
Sbjct: 134 ----RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH----QVELMRLMRELN 185
Query: 1206 ---RTTIIVAHRLS-TIKNADQISVIESGKIIEQGT 1237
+T + V H L+ + D + V+ +G ++ QGT
Sbjct: 186 TQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 26/237 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+R + S+ + V D +L + G+ AL+G SG GKST+L ++ F PTAG++
Sbjct: 20 LEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG--KDGASEGE----VIEAA 1130
M+DG+D+ + ++ I ++ Q ALF ++ +NI +G +D + E V E
Sbjct: 77 MLDGVDLSHV--PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEML 134
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
L + F P QLSGGQ+QRVA+AR++ K P++LLLDE ALD +
Sbjct: 135 GLVHMQEFAKRKPH-----------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
Query: 1191 -SERVVQQALQRLMR-KRTTIIVAH-RLSTIKNADQISVIESGKIIEQGTHSSLVEN 1244
+R+ + + L R T ++V H + + A +I+++ GK ++ G + E+
Sbjct: 184 LRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240
|
Length = 377 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 4e-23
Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 17/230 (7%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----P 1072
IE+R + S+ V + NL++ AL+G SGSGKST+L + R +
Sbjct: 4 IEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1073 TAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYG----KDGASEGEVI 1127
+G+V +DG DI ++++ LR+ + +V Q P SI+EN+ G + S+ E+
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
E + A + L + ++ +LSGGQ+QR+ IARA+ PE+LL DE T+ L
Sbjct: 121 ERVRWALEKA---QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 1188 DVESERVVQQALQRLMRKRTTIIVAH-RLSTIKNADQISVIESGKIIEQG 1236
D E+ ++ L + T ++V H + +D ++ + G+I+E G
Sbjct: 178 DPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 70/256 (27%), Positives = 128/256 (50%), Gaps = 16/256 (6%)
Query: 376 DKLSGHIEFKDVSFCYPSRPDV---------AIFDKFCLDIPAGKIVALVGGSGSGKSTV 426
++L G DV P+ V + D+ + PA + +L+G +GSGK+T
Sbjct: 4 ERLGGQSGAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTF 63
Query: 427 ISLIERFYEPLSG-----EILLDGNNIKGL-DLKWLRQQIGLVNQEPALFATTIRENILY 480
+ + R + +SG ++LL G +I D+ R+++G++ Q P F +I +N+L
Sbjct: 64 LRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLA 123
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
G + +++A L + + ++ + +LSGGQ+Q + ++R + NP
Sbjct: 124 GVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPE 183
Query: 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKT 599
+LLLDE TSALD + ++E + + T ++V H L+ R +D A+ ++V+
Sbjct: 184 VLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243
Query: 600 GSHEELISNPNSAYAA 615
G E+L S+P A A
Sbjct: 244 GPTEQLFSSPKHAETA 259
|
Length = 276 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 5e-23
Identities = 70/237 (29%), Positives = 118/237 (49%), Gaps = 28/237 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I + +SF YP A+ D + G+ VA+VG +GSGKST+ L+ P +G I
Sbjct: 6 IRVEHISFRYPDAATYALKD-VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKD------DATMEEITRA 493
+ G + + +R+Q+G+V Q P T+++++ +G + + +E + +A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
+ F++ P R LSGGQKQR+AI+ + P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREPHR-----------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 554 ESENSVQEALD--RVMV--GRTTVV-VAHRLSTIRNADVIAVVQGRKIVKTGSHEEL 605
+E L+ R + TV+ + H L AD + V+ +I++ G+ EE+
Sbjct: 174 RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEI 227
|
Length = 279 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 5e-23
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 36/233 (15%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ + F Y +P F L G+I A+VG SGSGKST+++LI F P SG +
Sbjct: 1 VRLDKIRFSYGEQP----MH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENI---------LYGKDDATMEEIT 491
L++G ++ + + ++ QE LFA T+ +N+ L +D +E
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
L+ LP +LSGG++QR+A++R +V++ +LLLDE +AL
Sbjct: 114 ARVGLAG---LEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159
Query: 552 DAESENSVQEALDRV--MVGRTTVVVAHRLSTIRNAD--VIAVVQGRKIVKTG 600
D + + + + T ++V H+ + V+ + GR I G
Sbjct: 160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR-IAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-23
Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 29/222 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
LDIP+G++VAL+G SGSGK+T++ +I SG I G ++ L + +++G V
Sbjct: 23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DRKVGFVF 80
Query: 465 QEPALFA-TTIRENILYG------KDDATMEEI-TRAAKLSEAMSFISNLPERFETQVGE 516
Q ALF T+ +NI +G ++ I + +L E M +++L +R+ Q
Sbjct: 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLE-MVQLAHLADRYPAQ--- 136
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM------VGR 570
LSGGQKQR+A++RA+ P ILLLDE ALDA+ V++ L R + +
Sbjct: 137 ----LSGGQKQRVALARALAVEPQILLLDEPFGALDAQ----VRKELRRWLRQLHEELKF 188
Query: 571 TTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
T+V V H + + AD + V+ I + G+ +++ P +
Sbjct: 189 TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPAT 230
|
Length = 353 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 6e-23
Identities = 77/248 (31%), Positives = 121/248 (48%), Gaps = 32/248 (12%)
Query: 382 IEFKDVSFCY-PSRPDVAI-FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
I+F++V + Y P P D ++ G VALVG +GSGKST++ +P SG
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 440 EILLDGNNIK----GLDLKWLRQQIGLVNQ--EPALFATTIRENILYGKDD--ATMEEIT 491
I + G +I +LK LR+++ LV Q E LF T+ +++ +G + + +E
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 492 RAAK-------LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544
A LSE + IS P FE LSGGQ +R+AI+ + P IL L
Sbjct: 123 EKALKWLKKVGLSEDL--ISKSP--FE---------LSGGQMRRVAIAGVMAYEPEILCL 169
Query: 545 DEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602
DE + LD E + + D G T ++V H + + AD + V++ K++K S
Sbjct: 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229
Query: 603 EELISNPN 610
+E+ S+
Sbjct: 230 KEIFSDKE 237
|
Length = 287 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 7e-23
Identities = 59/178 (33%), Positives = 104/178 (58%), Gaps = 16/178 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +SF Y +R + D + G+ VAL+G +G+GKST+ SL+ R Y G+I
Sbjct: 2 LEVAGLSFRYGARRAL---DDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGKDDATMEEITRA---AKLS 497
+ G++++ L + +G+V Q+P L ++R+N+ Y A + ++RA A+++
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARARIA 114
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
E ++ + L ER + +V E L+GG ++R+ I+RA++ P++LLLDE T LD S
Sbjct: 115 ELLARLG-LAERADDKVRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 7e-23
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++V + I + + AG+ + G SG GKST++ ++ P SG +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG---KDDATMEEITRAAKLSE 498
L +G +I L + RQQ+ Q P LF T+ +N+++ ++ I +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD----D 120
Query: 499 AMSFISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
F LP+ + + I +LSGG+KQRI++ R + P +LLLDE TSALD +++
Sbjct: 121 LERF--ALPD----TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174
Query: 558 SVQEALDRVMVGRTTVV--VAHRLSTIRNAD-VI 588
+V E + R + + V V H I +AD VI
Sbjct: 175 NVNEIIHRYVREQNIAVLWVTHDKDEINHADKVI 208
|
Length = 225 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-23
Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 39/223 (17%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK 1094
+ D +L + +G+ +AL+G SGSGK+T+L +I T+G + G D+ RL+ + +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--R 74
Query: 1095 HIALVQQEPALFA-TSIYENILYGKDGASEGEVIEAAKLANAHSF------------ISA 1141
+ V Q ALF ++++NI +G V+ + NA + ++
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGL------TVLPRRERPNAAAIKAKVTQLLEMVQLAH 128
Query: 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
L + Y QLSGGQKQRVA+ARA+ P+ILLLDE ALD + V++ L+R
Sbjct: 129 LADRYPA-------QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ----VRKELRR 177
Query: 1202 LMR------KRTTIIVAH-RLSTIKNADQISVIESGKIIEQGT 1237
+R K T++ V H + ++ AD++ V+ G I + GT
Sbjct: 178 WLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
Length = 353 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 7e-23
Identities = 71/245 (28%), Positives = 115/245 (46%), Gaps = 46/245 (18%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E R + R + D +L +R G+ +A++G +G+GKST+L + P +G+
Sbjct: 2 MLEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE 58
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPAL-FATSIYENILYG----KDGASEGEVIEAAK 1131
V ++G + + L + A++ Q +L F ++ E + G +E + + AA
Sbjct: 59 VRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAA 118
Query: 1132 LANAHSFISALPEGYSTKVGERGV-QLSGGQKQRVAIARAVL-------KNPEILLLDEA 1183
LA ++ L R QLSGG++QRV +AR VL P LLLDE
Sbjct: 119 LAQVD--LAHL--------AGRDYPQLSGGEQQRVQLAR-VLAQLWEPDGPPRWLLLDEP 167
Query: 1184 TSALDVESERVVQQALQRLMRKRTT------IIVAHRLSTIKN-----ADQISVIESGKI 1232
TSALD+ Q + RL R+ I+V H L N AD+I ++ G++
Sbjct: 168 TSALDLAH----QHHVLRLARQLAHERGLAVIVVLHDL----NLAARYADRIVLLHQGRL 219
Query: 1233 IEQGT 1237
+ GT
Sbjct: 220 VADGT 224
|
Length = 258 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 8e-23
Identities = 63/215 (29%), Positives = 117/215 (54%), Gaps = 9/215 (4%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI--KGLDLKWLR 457
+D P + A++G SG GKSTV+ I R ++ ++G+ILLD +I +G+D +R
Sbjct: 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84
Query: 458 QQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
+++G+V Q+P F A +I +N++ G + A ++ E+ L + + ++
Sbjct: 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKS 144
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVA 576
++LSGGQ+QR+ I+R I P ++L+DE SALD S ++E ++ + T ++V
Sbjct: 145 NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204
Query: 577 HRL-STIRNADVIAVVQGRKIVKTGSHEELISNPN 610
H + R +D A +V+ G +++ + P
Sbjct: 205 HNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
|
Length = 252 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 9e-23
Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 37/236 (15%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E + ++ +P V D L + G+I AL+G +G+GKST++ ++ Y+P SGEI
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 442 LLDGN--NIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEI------TR 492
+DG IK +R IG+V+Q L T T+ ENI+ G + + I R
Sbjct: 62 RVDGKEVRIKS-PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
+LSE + + V + LS G++QR+ I +A+ + +L+LDE T+ L
Sbjct: 121 IKELSERYGLPVDPDAK----VAD----LSVGEQQRVEILKALYRGARLLILDEPTAVL- 171
Query: 553 AESENSVQEALDRVMV--------GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599
+ QEA D + G+T + + H+L + AD + V++ K+V T
Sbjct: 172 -----TPQEA-DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221
|
Length = 501 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 9e-23
Identities = 73/236 (30%), Positives = 110/236 (46%), Gaps = 37/236 (15%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI--KGLDLKWLR 457
L IPA KI+A +G SG GKST++ R + + G +L NI ++ LR
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100
Query: 458 QQIGLVNQEPALFATTIRENILYGK---------DDATMEEITRAAKLSEAMSFISNLPE 508
+Q+G+V Q P F +I ENI + D+ + + RAA E
Sbjct: 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV--------- 151
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV 568
+ ++ E+G LSGGQ+QR+ I+RAI P +LL+DE SALD S V+E +
Sbjct: 152 --KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209
Query: 569 GRTTVVVAHRLSTI-RNADVIAVVQGR---------KIVKTGSHEELISNPNSAYA 614
T ++V H + R AD A K+V+ E++ +P + A
Sbjct: 210 QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEA 265
|
Length = 274 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 9e-23
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 35/237 (14%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL---- 1087
+ + N V AG+ +AL+G SGSGKST+L +++ G++ V+G + +
Sbjct: 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRN 71
Query: 1088 ---------NLKSLRKHIALVQQEPALFA-TSIYENILYG-------KDGASEGEVIEAA 1130
+L+ +R I +V Q LF ++ +N+ +E +E
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELL 131
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
+ G + K QLSGGQ+QRVAIARA+ P+++L DE TSALD E
Sbjct: 132 DMV-----------GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 1191 SERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
V ++RL T ++V H + + AD++ + G+I+EQG +
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 17/209 (8%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI----KRLNLKSLR 1093
D + + A+ G+SGSGK+T++ LI P G+++++G + K + L +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 1094 KHIALVQQEPALFA-TSIYENILYG-KDGASEGEVIEAAKLANAHSFISALPEGYSTKVG 1151
+ I V QE LF S+ N+ YG K I ++ I L G +G
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERV------IELL--GIGHLLG 126
Query: 1152 ERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTI 1209
+LSGG+KQRVAI RA+L +P +LL+DE +ALD + + L+RL +
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 1210 IVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
V+H L + AD++ V+E G++ G
Sbjct: 187 YVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 1e-22
Identities = 79/268 (29%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 382 IEFKDVSFCYPSRPD---VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
I F +VS+ Y AI D + GK A+VG +GSGKST+I I +P +
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHD-VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 439 GEILLDGNNI----KGLDLKWLRQQIGLVNQ--EPALFATTIRENILYGKDDATM--EEI 490
G + +D I K ++ +R++IG+V Q E LF T+ I++G + M +E+
Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEV 121
Query: 491 -TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
A +L + F ++ + Q+SGGQ ++IAI + NP I++LDE T+
Sbjct: 122 KNYAHRLLMDLGFSRDVMS-------QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
Query: 550 ALDAESENSVQEALDRVMV--GRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELI 606
LD +S+ V L + +T ++V+H ++ + R AD + V++ IV S +EL
Sbjct: 175 GLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234
Query: 607 SNPNS------AYAALVQLQEAASQQSN 628
+ +VQLQ Q+
Sbjct: 235 KDKKKLADWHIGLPEIVQLQYDFEQKYQ 262
|
Length = 286 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 1e-22
Identities = 68/228 (29%), Positives = 101/228 (44%), Gaps = 36/228 (15%)
Query: 1020 LRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV 1079
G+ E KD + +V G+ + L+G++G+GKST+L L+ Y P +G V V
Sbjct: 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81
Query: 1080 DGIDIKRLNLKSLRKHIAL-VQQEPALFATSIYENI-----LYGKDGASEGEVIEAAKLA 1133
G + SL + L P L + ENI L G E I+
Sbjct: 82 RG------RVSSL---LGLGGGFNPEL---TGRENIYLNGRLLGLSRKEIDEKID----- 124
Query: 1134 NAHSFI---SALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
I S L + V S G K R+A A A P+ILL+DE + D
Sbjct: 125 ----EIIEFSELGDFIDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176
Query: 1191 SERVVQQALQRLMRK-RTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236
+ Q+ L+ L+++ +T I+V+H S+IK D+ V+E GKI G
Sbjct: 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 10/210 (4%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLV 463
L++ G+IVAL+G +G+GK+T++ I P SG I+ DG +I GL + R I V
Sbjct: 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYV 83
Query: 464 NQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
+ +F T+ EN+L G +E L E L ER + G LS
Sbjct: 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQER-DLEEVYELFPRLKERRNQRAG----TLS 138
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVAHRLS 580
GG++Q +AI+RA++ P +LLLDE + L + + EA+ + G T ++V
Sbjct: 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198
Query: 581 TIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
AD V++ +IV +G+ EL+++P
Sbjct: 199 FALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 18/248 (7%)
Query: 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070
+ I+++ + F Y + + + ++ + K A++G SG GKST + + R
Sbjct: 1 NQQLIPAIKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57
Query: 1071 DPTAGKVMVDG--------IDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGAS 1122
+ G V V+G I R+N+ LR+ I +V Q P F SIYEN+ YG ++
Sbjct: 58 E-LEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISA 116
Query: 1123 EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDE 1182
+ + ++ + +AL + K+ + + LSGGQ+QR+ IARA+ P++LL+DE
Sbjct: 117 KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE 176
Query: 1183 ATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIES------GKIIEQG 1236
SALD + V++ + L + T IV H + + S G+++E G
Sbjct: 177 PCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236
Query: 1237 THSSLVEN 1244
+ + N
Sbjct: 237 VTTQIFSN 244
|
Length = 259 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-22
Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 16/220 (7%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I + V +VG +GSGKST++ R E GEI ++G I L+ LR+Q ++ Q+
Sbjct: 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQD 1392
Query: 467 PALFATTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
P LF T+R+N+ D +A+ E+ A +L +++ E +++V E G S
Sbjct: 1393 PVLFDGTVRQNV----DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSV 1448
Query: 524 GQKQRIAISRAIVKNPS-ILLLDEATS----ALDAESENSVQEALDRVMVGRTTVVVAHR 578
GQ+Q + ++RA++K S +L+DEAT+ ALD + + +V A T + +AHR
Sbjct: 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS----AYTVITIAHR 1504
Query: 579 LSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618
L T+ D I V+ + + GS EL+ N S + ++V+
Sbjct: 1505 LHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVE 1544
|
Length = 1560 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 15/226 (6%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
+ D L I G +V L+G SG GK+TV+ L+ +P G+I +DG ++ ++
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ- 76
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFI--SNLPERFET 512
++ I +V Q ALF ++ EN+ YG + + R ++ EA+ + + +R+
Sbjct: 77 -QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVD 135
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGR 570
Q+ SGGQ+QR+A++RA++ P +LL DE S LDA S++E + +
Sbjct: 136 QI-------SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNI 188
Query: 571 TTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
T++ V H S +D + V+ KI++ GS +EL P S + A
Sbjct: 189 TSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMA 234
|
Length = 351 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 33/219 (15%)
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIAL 1098
F+L V G+ +A++G SG+GKST+L+LI F P +G + ++G D R+ +++
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD--HTTTPPSRRPVSM 75
Query: 1099 VQQEPALFA-TSIYENILYGKD------GASEGEVIEAAKLANAHSFISALPEGYSTKVG 1151
+ QE LF+ ++ +NI G + A ++ A+ ++ LP
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG------- 128
Query: 1152 ERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD----VESERVVQQALQRLMRKRT 1207
QLSGGQ+QRVA+AR +++ ILLLDE SALD E +V Q Q R+ T
Sbjct: 129 ----QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE--RQLT 182
Query: 1208 TIIVAHRLSTIKNADQIS----VIESGKIIEQGTHSSLV 1242
++V+H L +A +I+ V+ G+I G L+
Sbjct: 183 LLMVSHSLE---DAARIAPRSLVVADGRIAWDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 2e-22
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 30/225 (13%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNI--KGLDLKWLRQQ 459
I +I +G SG GKSTV+ + R + G + G ++ KG+D +R+
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 460 IGLVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
IG+V Q+P F+ +I +N+ +G K D ++ A+ + L + + +
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDL-------GDRVKHALQGAA-LWDEVKDK 142
Query: 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTV 573
+ G+ LSGGQ+QR+ I+RAI P +LLLDE SALD + V+E + + T
Sbjct: 143 LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIA 202
Query: 574 VVAHRL-STIRNADVIA-----VVQGRK---IVKTGSHEELISNP 609
+V H + IR AD A + QG + +V+ G ++ NP
Sbjct: 203 LVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247
|
Length = 261 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 20/223 (8%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDI--KRLN 1088
+ N+K+ AL+G SG GKST L + R D G V+ +G +I +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 1089 LKSLRKHIALVQQEPALFATSIYENILYG------KDGASEGEVIEAAKLANAHSFISAL 1142
+ LR+ I +V Q P F SIY+NI YG KD E++E + SAL
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKK------SAL 136
Query: 1143 PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRL 1202
K+ + LSGGQ+QR+ IAR + P ++L+DE TSALD S +++ + L
Sbjct: 137 WNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196
Query: 1203 MRKRTTIIVAHRLSTI-KNADQISVIESGKIIEQGTHSSLVEN 1244
T IIV H + + +D+ + +G I E+ + L N
Sbjct: 197 KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239
|
Length = 254 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 2e-22
Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 37/287 (12%)
Query: 972 AMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRP 1031
A+ E +L + + E + + I+L GV SY +
Sbjct: 5 AVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVA---------IDLAGVSKSYGDKA 55
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS 1091
V + V +G+ L+G +G+GKST+ +IL P AGK+ V G+ + +
Sbjct: 56 VV---NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA-RARL 111
Query: 1092 LRKHIALVQQEPAL-FATSIYENIL-YGKDGASEGEVIEAAKLANAHSFISALPE--GYS 1147
R I +V Q L ++ EN+L +G+ IEA I +L E
Sbjct: 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV--------IPSLLEFARLE 163
Query: 1148 TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRT 1207
+K R LSGG K+R+ +ARA++ +P++L+LDE T+ LD + ++ + L+ L+ +
Sbjct: 164 SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 223
Query: 1208 TIIV-------AHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDG 1247
TI++ A RL D++ V+E+G+ I +G +L++ G
Sbjct: 224 TILLTTHFMEEAERL-----CDRLCVLEAGRKIAEGRPHALIDEHIG 265
|
Length = 340 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 68/251 (27%), Positives = 130/251 (51%), Gaps = 20/251 (7%)
Query: 375 LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434
+ KL I+ ++SF Y ++ I + ++I K+ A++G SG GKST + + R
Sbjct: 1 MSKLIPAIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57
Query: 435 EPLSGEILLDG------NNI--KGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDAT 486
E L E+ ++G NI + ++L LR+Q+ +V+ +P LF ++ +N+ YG
Sbjct: 58 E-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVG 116
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
+ E+ ++L + + ++ + + LSGGQ+QR+ I+RA+ P +LL+DE
Sbjct: 117 WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 547 ATSALDAESENSVQEALD--RVMVGRTTVVVAHRLSTI-RNADVIAVVQGR-----KIVK 598
LD + V+ + R+ T V+V+H L + R +D A +G ++V+
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236
Query: 599 TGSHEELISNP 609
G +++ ++P
Sbjct: 237 FGLTKKIFNSP 247
|
Length = 261 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 2e-22
Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 19/240 (7%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--PTA- 1074
IE + Y V+ K +LK+ AL+G SG GKST+L R + A
Sbjct: 5 IETVNLRVYY-GSNHVI--KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 1075 --GKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFA-TSIYENILYG----KDGASEGE 1125
G+V + G +I ++ +R+ + +V Q P F +IY+N+ G S+ E
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 1126 VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATS 1185
+ E + A + AL + ++ + LSGGQ+QR+ IARA+ P+ILL+DE T+
Sbjct: 122 LDERVEWALKKA---ALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178
Query: 1186 ALDVESERVVQQALQRLMRKRTTIIVAHR-LSTIKNADQISVIESGKIIEQGTHSSLVEN 1244
+D +++ L L ++ T ++V H + +D ++ + GK+IE G + EN
Sbjct: 179 NIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238
|
Length = 253 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 2e-22
Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 32/238 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ ++ Y + A+FD LD P G+ + L+G SG+GKS+++ ++ P SG +
Sbjct: 3 IQLNGINCFYGAHQ--ALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 442 LLDGN---------NIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEIT 491
+ GN + DL R+ +G+V Q+ L+ T++EN++ E
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDL---RRNVGMVFQQYNLWPHLTVQENLI--------EAPC 108
Query: 492 RAAKLS--EAMSFISNLPERFE-TQVGER-GIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
R LS +A++ L +R +R + LSGGQ+QR+AI+RA++ P +LL DE
Sbjct: 109 RVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
Query: 548 TSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSH 602
T+ALD E + + + G T V+V H + R + V+ + G IV+ G
Sbjct: 169 TAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGH-IVEQGDA 225
|
Length = 242 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 22/234 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ ++ Y + A+FD LD P G+ + L+G SG+GKS+++ ++ P SG +
Sbjct: 3 IQLNGINCFYGA--HQALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 442 LLDGN------NIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATME--EITR 492
+ GN ++ LR+ +G+V Q+ L+ T+++N++ +A +++
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI----EAPCRVLGLSK 115
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
L+ A + L R + + LSGGQ+QR+AI+RA++ P +LL DE T+ALD
Sbjct: 116 DQALARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
Query: 553 AESENSVQEALDRVM-VGRTTVVVAHRLSTIRNA--DVIAVVQGRKIVKTGSHE 603
E + + + G T V+V H + R V+ + G IV+ G
Sbjct: 174 PEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGH-IVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 32/226 (14%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
I + L +P GKI AL+G +G GKST++ R P SG + L I L + L +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 459 QIGLVNQE-PALFATTIRENILYGKD----------DATMEEITRAAKLSEAMSFISNLP 507
++ L+ Q T+RE + YG+ + +A + + I++L
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR----INHLA 132
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
+R R LSGGQ+QR ++ + ++ ++LLDE T+ LD + Q L R+M
Sbjct: 133 DR-------RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI----NHQVELMRLM 181
Query: 568 -----VGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
G+T V V H L+ R D + V+ ++ G+ EE+++
Sbjct: 182 RELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227
|
Length = 255 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 29/220 (13%)
Query: 1020 LRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV 1079
L V Y R + +L + AG+ +A+VG+SG GKST+L L+ P+AG+++
Sbjct: 15 LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71
Query: 1080 DGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENI---LYGKDGASEGEVIEAAKLANA 1135
L R+ L+ Q+ L + +N+ L G+ + + + A LA+
Sbjct: 72 G-----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD- 125
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVV 1195
+ E LSGGQKQRVA+ARA++ P +LLLDE ALD + +
Sbjct: 126 -------------RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172
Query: 1196 QQALQRLMRKR--TTIIVAHRLS-TIKNADQISVIESGKI 1232
Q ++ L ++ T ++V H +S + AD++ +IE GKI
Sbjct: 173 QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 3e-22
Identities = 79/267 (29%), Positives = 136/267 (50%), Gaps = 38/267 (14%)
Query: 382 IEFKDVSFCYPSRPD--VAIFDK-------------------FCLDIPAGKIVALVGGSG 420
I FK+V + +PD +A+ D+ LDI G+I L+G SG
Sbjct: 1 IRFKNVDIVFGDQPDEALALLDQGKTREEILDRTGLVLGVHNASLDIEEGEICVLMGLSG 60
Query: 421 SGKSTVISLIERFYEPLSGEILL-DGN---NIKGLD---LKWLRQ-QIGLVNQEPALFA- 471
SGKST++ + G +L+ DG+ ++ D L+ LR ++ +V Q+ AL
Sbjct: 61 SGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPW 120
Query: 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531
T+ EN+ +G + M + R ++ E + + L + + + GE LSGG +QR+ +
Sbjct: 121 RTVEENVAFGLEMQGMPKAERRKRVDEQLELV-GLAQWADRKPGE----LSGGMQQRVGL 175
Query: 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRL-STIRNADVI 588
+RA ILL+DE SALD +Q+ L + + +T V V+H L ++ + I
Sbjct: 176 ARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALKIGNRI 235
Query: 589 AVVQGRKIVKTGSHEELISNPNSAYAA 615
A+++G +I++ G+ EE++ NP + Y A
Sbjct: 236 AIMEGGRIIQHGTPEEIVLNPANDYVA 262
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 4e-22
Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 23/219 (10%)
Query: 403 FCLDI----PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----KGLDLK 454
F LD PA I AL G SGSGK+++I++I P G I L+G + KG+ L
Sbjct: 13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLP 72
Query: 455 WLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
+++IG V Q+ LF T+R N+ YG + + + A+ I +L +R
Sbjct: 73 PEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLV----ALLGIEHLLDR---- 124
Query: 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRT 571
LSGG+KQR+AI RA++ P +LL+DE ++LD + + L+R+ +
Sbjct: 125 ---YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP 181
Query: 572 TVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNP 609
+ V+H L + R AD + V++ K+ +G EE+ +P
Sbjct: 182 ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220
|
Length = 352 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-22
Identities = 78/253 (30%), Positives = 119/253 (47%), Gaps = 71/253 (28%)
Query: 403 FCLDIPAGKIVALVGGSGSGKSTV---ISLIERFYEPLSGEILLDGNNIKGLD---LKWL 456
F L+ GK +A+VG SG GKST+ +++IE P GE+ G ++ D K L
Sbjct: 36 FTLE--RGKTLAVVGESGCGKSTLARLLTMIE---TPTGGELYYQGQDLLKADPEAQKLL 90
Query: 457 RQQIGLVNQEPALFATTIRENILYG------KDDATMEE----------ITRAAKLSEAM 500
RQ+I +V Q P YG K +EE R K M
Sbjct: 91 RQKIQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMM 138
Query: 501 SFISNLPERFETQVGERGIQ-------LSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
+ +VG R SGGQ+QRIAI+RA++ +P +++ DE SALD
Sbjct: 139 A-----------KVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
Query: 554 ESENSVQ-EALDRVM-----VGRTTVVVAHRLSTIRNA--DVIAVVQGRKIVKTGSHEEL 605
SVQ + L+ +M +G + V ++H LS + + +V+ + GR V+ G+ E++
Sbjct: 188 ----SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR-CVEKGTKEQI 242
Query: 606 ISNPNSAYA-ALV 617
+NP Y AL+
Sbjct: 243 FNNPRHPYTQALL 255
|
Length = 327 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 6e-22
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 22/220 (10%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
S I D + P G + L+G +GSGKST++ L+ P +G + L G ++ GL
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 453 LKWLRQQIGLVNQE-PALFATTIRENILYGK---------DDATMEEITRAAKLSEAMSF 502
+ +++ LV Q+ T+R+ + G+ D + A A +
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRAL---ARTE 126
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
+S+L +R + LSGG++QR+ ++RA+ + P +LLLDE T+ LD ++
Sbjct: 127 LSHLADRDMST-------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179
Query: 563 LDRVMVGRTTVVVA-HRLS-TIRNADVIAVVQGRKIVKTG 600
+ + TVV A H L+ D + V+ G ++V G
Sbjct: 180 VRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 6e-22
Identities = 67/243 (27%), Positives = 118/243 (48%), Gaps = 30/243 (12%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+I+L G++ Y + +F D L G+++ L+G SG+GKS++L ++ P +G
Sbjct: 2 SIQLNGINCFYGAHQ--ALF-DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 1077 VMVDG--IDIKRL----NLKSLRKHIALVQQEPALFA-TSIYENILYG-------KDGAS 1122
+ + G D + ++ LR+++ +V Q+ L+ ++ EN++ +
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQA 118
Query: 1123 EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDE 1182
+ K + P + LSGGQ+QRVAIARA++ P++LL DE
Sbjct: 119 LARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 1183 ATSALDVESERVVQQALQRLMRKR-TTIIVAHRLSTI-KNADQISVIESGKIIEQGTHSS 1240
T+ALD E + ++ L T +IV H + K A ++ +E+G I+EQG S
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
Query: 1241 LVE 1243
E
Sbjct: 228 FTE 230
|
Length = 242 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 6e-22
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 21/215 (9%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS 1091
+ N KVR G+ +G +G+GK+T + ++ PT+G V G D+ R +
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRK 63
Query: 1092 LRKHIALVQQEPALF-ATSIYENI-----LYG-KDGASEGEVIEAAKLANAHSFISALPE 1144
+R+ I +V Q ++ + EN+ LYG +E E +L L E
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELF-------ELGE 116
Query: 1145 GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR 1204
VG SGG ++R+ IA +++ P++L LDE T+ LD + R + ++ L
Sbjct: 117 AADRPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE 172
Query: 1205 KRTTIIV-AHRLSTI-KNADQISVIESGKIIEQGT 1237
+ TI++ H + K D+I++I+ G+II +GT
Sbjct: 173 EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGT 207
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (241), Expect = 7e-22
Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 26/245 (10%)
Query: 1018 IELRGVHFSY-PSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
I+ V+++Y P+ P +F D +L+V+ G AL+G +GSGKST+L + PT
Sbjct: 2 IKFEKVNYTYQPNSPFASRALF-DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 1075 GKVMVDGIDI----KRLNLKSLRKHIALVQQEP--ALFATSIYENILYGKD----GASEG 1124
GKV V I + K+ +K +RK + +V Q P LF ++ +++ +G +
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 1125 EVIEAAKLANAHSFISALPEGYSTKVGERG-VQLSGGQKQRVAIARAVLKNPEILLLDEA 1183
E I A KL G + + E+ +LSGGQ +RVAIA + PE+L+LDE
Sbjct: 121 EKIAAEKLEMV---------GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEP 171
Query: 1184 TSALDVESERVVQQALQRLMRK-RTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241
T+ LD ++ + Q + + + +T ++V H + + + AD + ++E G II GT S +
Sbjct: 172 TAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
Query: 1242 VENED 1246
+ D
Sbjct: 232 FQEVD 236
|
Length = 288 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 9e-22
Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 24/240 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE R + +SY E + + N +A++G +G+GKST+ PT+G V
Sbjct: 4 IETRDLCYSYSGSKEAL--NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYGKD--GASEGEVIEAAKLA 1133
++ G I + N++ +RK + LV Q P +F+ ++ ++I +G G E V
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETV------- 114
Query: 1134 NAHSFISALP----EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
AH SAL E +V LSGG+K+RVAIA + P++L+LDE T+ LD
Sbjct: 115 -AHRVSSALHMLGLEELRDRVPH---HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 1190 ESERVVQQALQRLMRK--RTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246
+ + + L L T I H+L + AD I V++ G+I+ GT + D
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 9e-22
Identities = 54/210 (25%), Positives = 103/210 (49%), Gaps = 16/210 (7%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG--IDIKRLNL 1089
V D + V G+ L+G +G+GK+T + +IL P +G+V+ DG +DI
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----- 66
Query: 1090 KSLRKHIALVQQEPALF-ATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYST 1148
+ R I + +E L+ + + ++Y +G E A+ ++ L S
Sbjct: 67 -AARNRIGYLPEERGLYPKMKVIDQLVYL--AQLKGLKKEEAR-RRIDEWLERL--ELSE 120
Query: 1149 KVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTT 1208
+R +LS G +Q+V AV+ +PE+L+LDE S LD + +++ ++ L R T
Sbjct: 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 1209 II-VAHRLSTIKN-ADQISVIESGKIIEQG 1236
+I H++ ++ D++ ++ G+ + G
Sbjct: 181 VILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 1e-21
Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE- 440
+EFK VSF YP + IP G AL+G +GSGKST+ LI P
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 441 --ILLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKL 496
I +DG + + +R+++G+V Q P T+ +++ +G ++ RA
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-------RAVPR 117
Query: 497 SEAMSFISNLPERFETQVGERGIQ------LSGGQKQRIAISRAIVKNPSILLLDEATSA 550
E + + ++ VG LSGGQKQR+AI+ + P I++LDE+TS
Sbjct: 118 PEMIKIVRDVLA----DVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 551 LDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
LD + + + + ++ T + + H + AD + V+ K++ GS E+ S
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 609 P 609
Sbjct: 234 V 234
|
Length = 282 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (238), Expect = 1e-21
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 21/234 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+ + F Y +V + + G+ ++++GQ+GSGKST LI ++ GKV
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYGKD--GASEGEVI----EA 1129
+DG + N+ +LR+ I +V Q P ++ +++ +G + G E+I EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
N F + P +LSGGQKQRVA+A + PEI++LDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 1190 ESERVVQQALQRLMRKR--TTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSL 1241
+ + + + + K T + + H L ++D+I V+++G+II++ S L
Sbjct: 174 TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227
|
Length = 277 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 34/242 (14%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+I+L G++ Y + +F D L G+++ L+G SG+GKS++L ++ P +G
Sbjct: 2 SIQLNGINCFYGAHQ--ALF-DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 1077 VMVDG--------IDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYGK---DGASEG 1124
+ + G K + + LR+++ +V Q+ L+ ++ +N++ G S+
Sbjct: 59 LNIAGNHFDFSKTPSDKAI--RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKD 116
Query: 1125 EVIEAAK--LANAH--SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLL 1180
+ + A+ L + P + LSGGQ+QRVAIARA++ P++LL
Sbjct: 117 QALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQRVAIARALMMEPQVLLF 165
Query: 1181 DEATSALDVESERVVQQALQRLMRKR-TTIIVAHRLSTI-KNADQISVIESGKIIEQGTH 1238
DE T+ALD E + ++ L T +IV H + K A ++ +E+G I+EQG
Sbjct: 166 DEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
Query: 1239 SS 1240
S
Sbjct: 226 SC 227
|
Length = 242 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 1e-21
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 43/232 (18%)
Query: 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-------------DLKW 455
AG +++++G SGSGKST + I +P G I+++G I + L+
Sbjct: 30 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL 89
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV 514
LR ++ +V Q L++ T+ EN+ ME + LS+ + ++ +V
Sbjct: 90 LRTRLTMVFQHFNLWSHMTVLENV--------MEAPIQVLGLSKQEA--RERAVKYLAKV 139
Query: 515 G--ERG-----IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
G ER + LSGGQ+QR++I+RA+ P +LL DE TSALD E V E L R+M
Sbjct: 140 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVGEVL-RIM 195
Query: 568 V-----GRTTVVVAHRLSTIRNAD--VIAVVQGRKIVKTGSHEELISNPNSA 612
G+T VVV H + R+ VI + QG KI + G+ E+L NP S
Sbjct: 196 QQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG-KIEEEGAPEQLFGNPQSP 246
|
Length = 257 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-21
Identities = 67/229 (29%), Positives = 102/229 (44%), Gaps = 32/229 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWLRQQI 460
L + G+++ALVG SGSGKS I P SGEILLDG + L ++ + I
Sbjct: 7 LSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR--GRHI 64
Query: 461 GLVNQEP-----ALF--ATTIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPE 508
+ Q P LF E + L + A + E A L + + P
Sbjct: 65 ATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP- 123
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV 568
QLSGG QR+ I+ A++ P L+ DE T+ LD ++ V + L +
Sbjct: 124 ----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 569 GRTT--VVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
T +++ H L + R AD +AV+ +IV+ G+ +E+ NP
Sbjct: 174 LFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 26/230 (11%)
Query: 364 MSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGK 423
K ++ IE K+VS + I + G+ A+VG +G+GK
Sbjct: 14 PEPKEPKKRHPIEINEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGK 70
Query: 424 STVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQIGLVN---QEPALFATTIRENIL 479
+T++SL+ + P SG++ L G + + LR++IGLV+ E T+R+ +L
Sbjct: 71 TTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVL 130
Query: 480 YGK--------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531
G +D T E++ A L E + F + LS G+++R+ I
Sbjct: 131 SGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS--------LSQGEQRRVLI 182
Query: 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV---GRTTVVVAHR 578
+RA+VK+P +L+LDE LD + + L+ + + V H
Sbjct: 183 ARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
|
Length = 257 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 2e-21
Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 39/236 (16%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIK--------- 1085
+ K +L+ AG ++++G SGSGKST L I P+ G ++V+G I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1086 ----RLNLKSLRKHIALVQQEPALFA-TSIYENILYGKD---GASEGEVIEAAKLANAHS 1137
+ L+ LR + +V Q L++ ++ EN++ G S+ E E A
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVK----- 134
Query: 1138 FISALPEGYSTKVG--ERG-----VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
Y KVG ER V LSGGQ+QRV+IARA+ PE+LL DE TSALD E
Sbjct: 135 --------YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186
Query: 1191 SERVVQQALQRLMRK-RTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
V + +Q+L + +T ++V H + ++ + + + GKI E+G L N
Sbjct: 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 60/214 (28%), Positives = 114/214 (53%), Gaps = 15/214 (7%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS 1091
E +L++ G + ++G +G+GKST+L+ I PT+G++++DG+D+ + ++
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 1092 LRKHIALVQQEPAL---FATSIYENILYGKDGASEGEVIEAAKLANAH---SF---ISAL 1142
+A V Q+P +I EN+ S G+ + N SF ++ L
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALA---ESRGKKRGLSSALNERRRSSFRERLARL 134
Query: 1143 PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRL 1202
G ++ +R LSGGQ+Q +++ A L P+ILLLDE T+ALD ++ V + ++
Sbjct: 135 GLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKI 194
Query: 1203 MRKR--TTIIVAHRL-STIKNADQISVIESGKII 1233
+ + TT++V H + + +++ ++ SGKI+
Sbjct: 195 VEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (239), Expect = 3e-21
Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 8/205 (3%)
Query: 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG--- 439
E ++ +F Y +R + D LDI K+ A +G SG GKST + + + + + G
Sbjct: 82 EIRNFNFWYMNRTKHVLHD-LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 440 --EILLDGNNIKGLDLKWL--RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAK 495
EI G N + + L R +IG+V Q+P F +I +N+ YG + + + K
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ E + L + + + + G LSGGQ+QR+ I+RAI P +LL+DE TSALD +
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 556 ENSVQEALDRVMVGRTTVVVAHRLS 580
++E + + + ++V H ++
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMA 285
|
Length = 329 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (235), Expect = 3e-21
Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 28/280 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I ++VS+ YP + L I G+ + ++G +GSGKST+ + P G++
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 442 LLDGNNIKGLD------LKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRA 493
L + G+D L+ +R+ +G+V Q P T+ E++ +G ++ + I
Sbjct: 60 L-----VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIR 114
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
++ A++ I R + LSGGQ Q +A++ + P L+ DE TS LD
Sbjct: 115 KRVDRALAEIGLEKYRHRSPK-----TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169
Query: 554 ESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
+S +V E + ++ G+T V + H L + +AD I V+ KIV G E ++S+ +
Sbjct: 170 DSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQ 229
Query: 613 Y-----AALVQLQEAASQQSNSSQCPNMGRPLSIKFSREL 647
+L++L E N P S F+ E+
Sbjct: 230 TLGLTPPSLIELAENLKMHGVVIPWENTSSPSS--FAEEI 267
|
Length = 274 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (235), Expect = 3e-21
Identities = 67/243 (27%), Positives = 121/243 (49%), Gaps = 20/243 (8%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I++ + F Y ++ I + ++++ K A++G SG GKST L + R + +V
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEV 63
Query: 1078 MVDG--------IDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEA 1129
V+G I +R+NL LR+ +++V +P LF S+Y+N+ YG +E
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
+ + + L + K+ + + LSGGQ+QR+ IARA+ P++LL+DE LD
Sbjct: 124 DDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 1190 ESERVVQQALQ--RLMRKRTTIIVAHRLSTIKNADQISVI----ES--GKIIEQGTHSSL 1241
+ V+ +Q RL + T +IV+H L + + E+ G+++E G +
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKI 243
Query: 1242 VEN 1244
+
Sbjct: 244 FNS 246
|
Length = 261 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 3e-21
Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 29/235 (12%)
Query: 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV-DG---IDIKRLN 1088
V+ + +L + G+ L+G SGSGKST+L + + G V+V DG +D+ +
Sbjct: 37 VLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCD 96
Query: 1089 LKSLR----KHIALVQQEPALFA-TSIYENILYGKD--GASEGE----VIEAAKLANAHS 1137
+LR +++V Q+ AL ++ EN+ +G + G + E V E +L
Sbjct: 97 AATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVG--- 153
Query: 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
L + K GE LSGG +QRV +ARA ILL+DE SALD +Q
Sbjct: 154 ----LAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQD 205
Query: 1198 ALQRLMR--KRTTIIVAHRL-STIKNADQISVIESGKIIEQGTHSSLVENEDGAY 1249
L L K+T + V+H L +K ++I+++E G+II+ GT +V N Y
Sbjct: 206 ELLELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-21
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 49/226 (21%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I L + +Y RP + ++ +L + G+ + LVG++G+GKST+L ++ +P +G+
Sbjct: 3 MITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYG----------KDGASEGE 1125
V K LR + + QEP L ++ + ++ G + A
Sbjct: 60 VTRP---------KGLR--VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL 108
Query: 1126 VIEAAKLANAHSFISALPEGYS------------------TKVGERGVQLSGGQKQRVAI 1167
+L + +G++ V LSGG ++RVA+
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSS----LSGGWRRRVAL 164
Query: 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
ARA+L+ P++LLLDE T+ LD+ES ++ L+R T I+V+H
Sbjct: 165 ARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSH 208
|
Length = 530 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 4e-21
Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 44/236 (18%)
Query: 1020 LRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV 1079
LR V +Y +VVI KD NL + G+ + VG SG GKST+L +I D T+G + +
Sbjct: 6 LRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62
Query: 1080 DGIDIKRLN-LKSLRKHIALVQQEPALFA-TSIYENILYGKD--GASEGE----VIEAAK 1131
KR+N + + + +V Q AL+ S+ EN+ +G GA + E V + A+
Sbjct: 63 GE---KRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE 119
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
+ + P+ LSGGQ+QRVAI R ++ P + LLDE S LD
Sbjct: 120 VLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-- 166
Query: 1192 ERVVQQALQRLMR----------KRTTIIVAH-RLSTIKNADQISVIESGKIIEQG 1236
AL+ MR RT I V H ++ + AD+I V+++G++ + G
Sbjct: 167 ------ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 5e-21
Identities = 60/199 (30%), Positives = 109/199 (54%), Gaps = 4/199 (2%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK 1094
+ ++ + + G+ + L+G++GSGKST+LS LR + T G + +DG+ + L+ RK
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77
Query: 1095 HIALVQQEPALFATSIYENI-LYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153
++ Q+ +F+ + +N+ YGK S+ E+ + A+ S I P + +
Sbjct: 78 AFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG 135
Query: 1154 GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
G LS G KQ + +AR+VL +ILLLDE ++ LD + +V+++ L++ T I+ H
Sbjct: 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEH 195
Query: 1214 RLSTIKNADQISVIESGKI 1232
R+ + + VIE K+
Sbjct: 196 RIEAMLECQRFLVIEENKV 214
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 5e-21
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 43/212 (20%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF--YDPTAGKVMVDGIDIKRL-- 1087
I K NL ++ G+ AL+G +GSGKST+ I+ Y+ T G+++ G DI L
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 1088 NLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYS 1147
++ R I L Q P I K A+ F+ + EG
Sbjct: 72 EERA-RLGIFLAFQYPP---------------------EIPGVKNAD---FLRYVNEG-- 104
Query: 1148 TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-KR 1206
SGG+K+R I + +L P++ +LDE S LD+++ R+V + + +L +
Sbjct: 105 ---------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1207 TTIIVAH--RLSTIKNADQISVIESGKIIEQG 1236
+ +I+ H RL D++ V+ G+I++ G
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 6e-21
Identities = 58/234 (24%), Positives = 130/234 (55%), Gaps = 14/234 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I + V SY ++ + D +L + G +++G +G+GKST+LS++ R +G++
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAH 1136
+DG+++ K L K +++++QE + + ++ + + +G+ S+G + +
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTK-----EDR 113
Query: 1137 SFIS-ALPEGYSTKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
I+ A+ + + +R + +LSGGQ+QR IA + ++ + +LLDE + LD++
Sbjct: 114 RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ 173
Query: 1195 VQQALQRLMR--KRTTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSLVENE 1245
+ + L+RL +T ++V H ++ +D I +++GK+++QG+ +++ E
Sbjct: 174 IMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227
|
Length = 252 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 6e-21
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 72/215 (33%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IEL + +Y + + KD +L + G + LVG++G+GKST+L
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLL-------------- 43
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHS 1137
++ G+ EG V + + +
Sbjct: 44 -----------------------------------KLIAGELEPDEGIVTWGSTVKIGY- 67
Query: 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
QLSGG+K R+A+A+ +L+NP +LLLDE T+ LD+ES +++
Sbjct: 68 ----FE------------QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE 111
Query: 1198 ALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGK 1231
AL+ T I+V+H + A +I +E GK
Sbjct: 112 ALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 6e-21
Identities = 59/211 (27%), Positives = 112/211 (53%), Gaps = 14/211 (6%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN---LKS 1091
+ + +L + G+++ L+G+SG GKST+ L+L P G V G D+ +L+ ++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1092 LRKHIALVQQEP--ALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISA--LPEGYS 1147
R+ + LV Q+ A+ I+ G+ + E+ + A + L +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQII-GEPLRHLTSLDESEQKARIAELLDMVGLRSEDA 144
Query: 1148 TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRT 1207
K QLSGGQ QR+ IARA+ P++++LDEA S LD+ + V+ + L++L +
Sbjct: 145 DK---LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG 201
Query: 1208 T--IIVAHRLSTIKN-ADQISVIESGKIIEQ 1235
T + + H L +++ +++V++ G+I+E+
Sbjct: 202 TAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 7e-21
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 22/217 (10%)
Query: 411 KIVALVGGSGSGKSTVISLIERFYE-----PLSGEILL--DGNNI--KGLDLKWLRQQIG 461
++ AL+G SG GKST + R ++ GEI+L D NI +D +R +I
Sbjct: 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRIS 102
Query: 462 LVNQEPALFATTIRENILYG------KDDATMEEITRAAKLSEAMSFISNLPERFETQVG 515
+V Q+P F +I EN+ YG K + +EE A + A L + + ++G
Sbjct: 103 MVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA------LWDEVKDRLG 156
Query: 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVV 575
+ LSGGQ+QR+ I+RA+ +P ILL DE TSALD + S++E + + T ++V
Sbjct: 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIV 216
Query: 576 AHRL-STIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
H + R +D A + ++++ G+ + + P +
Sbjct: 217 THNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKN 253
|
Length = 265 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 7e-21
Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078
E+ ++ Y + I + +L+V G+ ++G++G GK+T+L ++ +G +
Sbjct: 2 EVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIR 58
Query: 1079 VDGIDIKRLN-LKSLRKHIALVQQEPALFAT-SIYENILYGKD--GASEGEVIEAAKLAN 1134
+DG DI +L + R IA V Q +F ++ EN+L G ++ +
Sbjct: 59 LDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPD------ 112
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
I L +G RG LSGGQ+Q++AIARA++ P++LLLDE T + +
Sbjct: 113 ---EIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD 169
Query: 1195 VQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245
+ + ++RL + ++V L + AD+ V+E G+++ G L E++
Sbjct: 170 IGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDEDK 223
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 8e-21
Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 30/249 (12%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
+V +++RGV F+ +R IF + +L V GK A++G SG GK+T+L LI P
Sbjct: 3 SVANLVDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP 59
Query: 1073 TAGKVMVDGIDI---KRLNLKSLRKHIALVQQEPALFA-TSIYENILYGKDGASEGEVIE 1128
G+++ DG +I R L ++RK ++++ Q ALF ++++N+ Y + E
Sbjct: 60 DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY--------PLRE 111
Query: 1129 AAKLANA--HSFISALPEGYSTKVGERGV------QLSGGQKQRVAIARAVLKNPEILLL 1180
+L HS + E VG RG +LSGG +R A+ARA+ P++++
Sbjct: 112 HTQLPAPLLHSTVMMKLEA----VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167
Query: 1181 DEATSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
DE D + V+ + + L T ++V+H + + + AD ++ KI+ G+
Sbjct: 168 DEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227
Query: 1238 HSSLVENED 1246
+L N D
Sbjct: 228 AQALQANPD 236
|
Length = 269 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 8e-21
Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 36/238 (15%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP---- 1072
IELR + ++P V +L ++ G+ +ALVG SGSGKS + L
Sbjct: 4 QIELRNIAL-QAAQPLV---HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQ 59
Query: 1073 TAGKVMVDGIDIKRLNLKSLR-KHIALVQQEP-ALF------ATSIYENIL-YGK--DGA 1121
TAG+V++DG K + +LR + IA + Q P + F T E L GK D A
Sbjct: 60 TAGRVLLDG---KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDA 116
Query: 1122 SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
+ +EA L NA + P ++SGG QR+ IA A+L ++ D
Sbjct: 117 TLTAALEAVGLENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIAD 165
Query: 1182 EATSALDVESERVVQQALQRLMRKRT--TIIVAHRLSTI-KNADQISVIESGKIIEQG 1236
E T+ LDV ++ + L+ +++KR ++V H + + + AD ++V+ G+I+EQG
Sbjct: 166 EPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
Length = 254 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 8e-21
Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 33/241 (13%)
Query: 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF--YDP 1072
+E++ +H + E I K NL V+ G+ A++G +GSGKST+ I+ Y+
Sbjct: 1 MMMLEIKDLHVEVEGKKE--ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV 58
Query: 1073 TAGKVMVDGIDIKRLNL-KSLRKHIALVQQEPA--------LFATSIYENILYGKDGASE 1123
T G+++ DG DI L+ + R I L Q P F + + E
Sbjct: 59 TEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPE 118
Query: 1124 --GEVIEAAKLANAHSFISALPEGYSTKVGERGVQ--LSGGQKQRVAIARAVLKNPEILL 1179
E+ E A+L L E + ER V SGG+K+R I + +L P++ +
Sbjct: 119 FIKELKEKAELLG-------LDEEFL----ERYVNEGFSGGEKKRNEILQLLLLEPKLAI 167
Query: 1180 LDEATSALDVESERVVQQALQRLMRK-RTTIIVAHR---LSTIKNADQISVIESGKIIEQ 1235
LDE S LD+++ ++V + + L + R +I+ H L IK D++ V+ G+I++
Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKS 226
Query: 1236 G 1236
G
Sbjct: 227 G 227
|
Length = 251 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 9e-21
Identities = 64/223 (28%), Positives = 118/223 (52%), Gaps = 24/223 (10%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN- 1088
+ + +L +++G+++AL+G+SG GKST+ L++ P+ G V G + +LN
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 1089 --LKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVI-------EAAKLANAHSFI 1139
K+ R+ I +V Q+ ++ A + + + E + +A +LA A +
Sbjct: 82 AQRKAFRRDIQMVFQD-SISAVNPRKTV-----REIIREPLRHLLSLDKAERLARASEML 135
Query: 1140 SA--LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
A L + K R QLSGGQ QRV +ARA+ P++L+LDEA S LD+ + V +
Sbjct: 136 RAVDLDDSVLDK---RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR 192
Query: 1198 ALQRLMRKRTT--IIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
L++L ++ T + + H L ++ ++ V+++G+I+E
Sbjct: 193 LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235
|
Length = 268 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 9e-21
Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 28/211 (13%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK 1094
+ +L V L+G +G+GKST+L +I PT+G+++ DG R +L
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHK--- 71
Query: 1095 HIALVQQEPALFAT-SIYENI-----LYGKDGASEGEVIEAAKLANAHSFISALPEGYST 1148
I + + P L+ + EN+ L G + EV+ L N
Sbjct: 72 -IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN-------------- 116
Query: 1149 KVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRT 1207
G++ Q S G KQR+ IA A+L +P++L+LDE T+ LD + +++ ++ +
Sbjct: 117 -TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI 175
Query: 1208 TIIV-AHRLSTIKN-ADQISVIESGKIIEQG 1236
T+I+ +H LS ++ AD I +I G + QG
Sbjct: 176 TVILSSHILSEVQQLADHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 9e-21
Identities = 70/236 (29%), Positives = 123/236 (52%), Gaps = 18/236 (7%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I+L GV SY + V+ D + + G+ L+G +G+GKST+ ++L P GK+
Sbjct: 5 IDLVGVSKSYGDK---VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPAL-FATSIYENIL-YGKDGASEGEVIEAAKLANA 1135
V G + + R I +V Q L ++ EN+L +G+ IEA
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV----- 115
Query: 1136 HSFISALPE--GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER 1193
I +L E +K R LSGG K+R+ +ARA++ +P++L+LDE T+ LD +
Sbjct: 116 ---IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARH 172
Query: 1194 VVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDG 1247
++ + L+ L+ R +T ++ H + + D++ V+ESG+ I +G +L++ + G
Sbjct: 173 LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIG 228
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 1e-20
Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 19/204 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L I G+++A+ G +GSGK++++ LI EP G+I G +I +
Sbjct: 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSS 104
Query: 465 QEPALFATTIRENILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
Q + TI+ENI++G D+ + + +A +L E I+ PE+ T +GE GI LS
Sbjct: 105 QFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED---ITKFPEKDNTVLGEGGITLS 161
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLST 581
GGQ+ RI+++RA+ K+ + LLD LD +E + E+ + ++M +T ++V ++
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 582 IRNADVIAVVQGRKIVKTGSHEEL 605
++ AD I ++ G+ EL
Sbjct: 222 LKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-20
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 22/221 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGLDLKWL--R 457
L IP + AL+G SG GKST++ R E + GE+ L G NI D+ + R
Sbjct: 25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84
Query: 458 QQIGLVNQEPALFA-TTIRENILYG-------KDDATMEEITRAAKLSEAMSFISNLPER 509
+++G+V Q P F TI +N+ G K ++E A L +A L +
Sbjct: 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWA-LKKAA-----LWDE 138
Query: 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569
+ ++ + LSGGQ+QR+ I+RA+ P ILL+DE T+ +D ++E L +
Sbjct: 139 VKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE 198
Query: 570 RTTVVVAHR-LSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
T V+V H R +D +A + K+++ G ++ NP
Sbjct: 199 YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENP 239
|
Length = 253 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-20
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 30/234 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E V Y ++ KD + ++ G +A+VG +G+GKST+L L+ P +G V
Sbjct: 322 LEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQE-PALFA-TSIYENILYGKDGASEGEVIEAAKLANA 1135
+K I Q L ++ E + G E EV A
Sbjct: 380 ------KVGETVK-----IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV-----RAYL 423
Query: 1136 HSFISALPEGYSTKVGERGVQ-LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
F G++ + E+ V LSGG+K R+ +A+ +L+ P +LLLDE T+ LD+ES
Sbjct: 424 GRF------GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477
Query: 1195 VQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDG 1247
+++AL + T ++V+H + A +I ++E +G + +E +
Sbjct: 478 LEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKE 529
|
Length = 530 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 25/234 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I + +S R + +L +R G+ +A++G +G+GKST+L + P +G+V
Sbjct: 2 IRAENLSYSLAGRR---LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 1078 MVDGIDIKRLNLKSLRKHIA-LVQQEPALFATSIYENILYGK----DGASEGEVIEAAKL 1132
++G+ + + L +H A L Q F ++ E + G+ G E A
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 1133 ANAHSFISALPEGYSTKVGERGVQ-LSGGQKQRVAIAR------AVLKNPEILLLDEATS 1185
A A + +S L R + LSGG++QRV +AR + + L LDE TS
Sbjct: 119 ALAATDLSGL--------AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170
Query: 1186 ALDVESERVVQQALQRLMRKRTTII-VAHRLS-TIKNADQISVIESGKIIEQGT 1237
ALD+ + + ++L R+ ++ V H L+ + AD+I ++ G++I G+
Sbjct: 171 ALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 63/239 (26%), Positives = 118/239 (49%), Gaps = 23/239 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I +++S+ S + D LD+ G+++A++G +G+GKST++ + P SGE+
Sbjct: 2 IRAENLSY---SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGK----DDATMEEITRAAKL 496
L+G + + L + ++ Q +L F T++E + G+ EE R A
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR------AIVKNPSILLLDEATSA 550
+ A + +S L R LSGG++QR+ ++R V + L LDE TSA
Sbjct: 119 ALAATDLSGLAGRDYR-------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
Query: 551 LD-AESENSVQEALDRVMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
LD A ++++ A G + V H L+ + AD I ++ +++ +GS +++++
Sbjct: 172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230
|
Length = 259 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 3e-20
Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 16/243 (6%)
Query: 378 LSGHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL-----I 430
S I +VS+ Y + + + L K+ ++G +GSGKST+I L I
Sbjct: 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 431 ERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATME 488
+ + G+ + N K ++K LR++IGLV Q P LF TI ++I +G +
Sbjct: 63 SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN 122
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
+ K+ E + + LPE + V +LSGGQK+R+A++ I + + L+LDE T
Sbjct: 123 KQEAYKKVPELLKLVQ-LPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 549 SALDAESENSVQEALDRV--MVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEEL 605
LD + E +R+ + ++V H + + R AD + V+ K++ GS E+
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 606 ISN 608
SN
Sbjct: 239 FSN 241
|
Length = 289 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 3e-20
Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 46/250 (18%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I+ R V Y + ++ + V+ G+ L+G +G+GK+T L ++L P AG +
Sbjct: 8 IDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQ----EPALFATSIYENIL-----YGKDGASEGEVI- 1127
+ G + + R+ + +V Q +P ++ EN+L +G A+ ++
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVP 120
Query: 1128 ---EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEAT 1184
E AKL N KVGE LSGG K+R+ +ARA++ +P++L+LDE T
Sbjct: 121 PLLEFAKLENKAD----------AKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPT 166
Query: 1185 SALDVESERVVQQALQRLMRKRTTIIV-------AHRLSTIKNADQISVIESGKIIEQGT 1237
+ LD ++ ++ + L+ L+ + TI++ A RL D++ VIE G+ I +G
Sbjct: 167 TGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAEGA 221
Query: 1238 HSSLVENEDG 1247
+L+E+E G
Sbjct: 222 PHALIESEIG 231
|
Length = 306 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 4e-20
Identities = 58/198 (29%), Positives = 109/198 (55%), Gaps = 2/198 (1%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK 1094
+ +D + V G+ + L+G++GSGKST+LS +LR T G++ +DG+ + L++ RK
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292
Query: 1095 HIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERG 1154
++ Q+ +F+ + +N L + S+ E+ + A+ S I P+ + + G
Sbjct: 1293 AFGVIPQKVFIFSGTFRKN-LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
Query: 1155 VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHR 1214
LS G KQ + +AR++L +ILLLDE ++ LD + +++++ L++ T I+ HR
Sbjct: 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411
Query: 1215 LSTIKNADQISVIESGKI 1232
+ + Q VIE +
Sbjct: 1412 VEALLECQQFLVIEGSSV 1429
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 4e-20
Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 56/229 (24%)
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIK---RLNLKSLRKH 1095
F L+ GK++A+VG+SG GKST+ L+ PT G++ G D+ K LR+
Sbjct: 36 FTLE--RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQK 93
Query: 1096 IALVQQEPALFATSIYENILYG------KDGASEGEVIE-------AAKLANAHSFISAL 1142
I +V Q P YG K G E + A + A + ++
Sbjct: 94 IQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMA-- 139
Query: 1143 PEGYSTKVGERGVQ-------LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVV 1195
KVG R SGGQ+QR+AIARA++ +P++++ DE SALDV V
Sbjct: 140 ------KVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS----V 189
Query: 1196 Q-QALQRLMR-----KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
Q Q L +M + + ++H LS +++ AD++ V+ G+ +E+GT
Sbjct: 190 QAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238
|
Length = 327 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 4e-20
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 8/190 (4%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457
+ L+I G V ++G +G+GKST+++ I +P SG+IL+DG ++ +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 458 QQIGLVNQEPAL---FATTIRENILYGKDDATMEEITRAAKLSEAMSF---ISNLPERFE 511
+ V Q+P TI EN+ + ++ A SF ++ L E
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR- 570
++ +R LSGGQ+Q +++ A + P ILLLDE T+ALD ++ V E +++
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199
Query: 571 -TTVVVAHRL 579
TT++V H +
Sbjct: 200 LTTLMVTHNM 209
|
Length = 263 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 4e-20
Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 19/184 (10%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096
K NL ++ G+ ++L+G SG GKST+L+LI PT+G V+++G I +
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---- 57
Query: 1097 ALVQQEPALFA-TSIYENILYGKDGA----SEGEVIEAAKLANAHSFISALPEGYSTKVG 1151
+V Q +L ++ ENI D S+ E + H + L E + G
Sbjct: 58 -VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSE---RRAIVEEHIALVGLTEAADKRPG 113
Query: 1152 ERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTI 1209
QLSGG KQRVAIARA+ P++LLLDE ALD + +Q+ L ++ + T +
Sbjct: 114 ----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL 169
Query: 1210 IVAH 1213
+V H
Sbjct: 170 MVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 5e-20
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 24/204 (11%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L + G+I +G +G+GK+T + +I +P SGEI DG + + ++IG +
Sbjct: 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ--KNIEALRRIGALI 78
Query: 465 QEPALFAT-TIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
+ P + T REN+ L G ++E+ + L + + +V
Sbjct: 79 EAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD----------VVGLKDSAKKKVK--- 125
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577
S G KQR+ I+ A++ NP +L+LDE T+ LD + ++E + + G T ++ +H
Sbjct: 126 -GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSH 184
Query: 578 RLSTIRN-ADVIAVVQGRKIVKTG 600
LS I+ AD I ++ K+++ G
Sbjct: 185 LLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 5e-20
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 16/178 (8%)
Query: 391 YPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450
Y +P + L + +G+++ ++G SG GK+T+++LI F G I LDG ++G
Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67
Query: 451 LDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER 509
+ G+V Q L +++N+ +G A +E++ R + + + L
Sbjct: 68 PG-----AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKV-GLEG- 120
Query: 510 FETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
+R I QLSGGQ+QR+ I+RA+ NP +LLLDE ALDA + +Q L ++
Sbjct: 121 ----AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174
|
Length = 255 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 5e-20
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 26/236 (11%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI------- 1084
E+V + + K ++G SGSGKST+++ G + V I I
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 1085 ---------KRLNLKSLRKHIALVQQEP--ALFATSIYENILYGKDGASEGEVIEAAKLA 1133
K N K LR+ +++V Q P LF +I ++I++G + EA KLA
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKK-SEAKKLA 156
Query: 1134 NAHSFISALPEGYSTKVGERG-VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE 1192
+ L + Y ER LSGGQK+RVAIA + PEIL+ DE T+ LD + E
Sbjct: 157 KFYLNKMGLDDSYL----ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
Query: 1193 R-VVQQALQRLMRKRTTIIVAHRLSTI-KNADQISVIESGKIIEQGTHSSLVENED 1246
++Q L +T ++ H + + + AD++ V++ GKI++ GT + ++
Sbjct: 213 HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQH 268
|
Length = 320 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 6e-20
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 34/250 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI---ERFYEPLS 438
+ F DV+ + + + D + AG+ VAL+G SGSGKST++ ++ E E
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE--- 54
Query: 439 GEILLDGNNIKGLD-------------LKWLRQQIGLVNQEPALFA-TTIRENILYGKDD 484
G+I ++G + + L+ +R +IG+V Q LF T+ +N+ +
Sbjct: 55 GQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVT----E 110
Query: 485 ATMEE--ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSIL 542
A + + RA AM + + + QLSGGQ+QR+AI+RA+ P ++
Sbjct: 111 APVLVLGMARAEAEKRAMELLDMVG--LADKADHMPAQLSGGQQQRVAIARALAMRPKVM 168
Query: 543 LLDEATSALDAESENSVQEALDRVMVGR--TTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599
L DE TSALD E V + R+ T ++V H + R AD + +IV+
Sbjct: 169 LFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228
Query: 600 GSHEELISNP 609
G +E+ P
Sbjct: 229 GKPDEIFRQP 238
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 6e-20
Identities = 59/211 (27%), Positives = 109/211 (51%), Gaps = 22/211 (10%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096
+ + +VR G+ L+G +G+GK+T + ++ PT+G+ V G D+ R + +R+ I
Sbjct: 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRI 75
Query: 1097 ALVQQEPAL-FATSIYENI-----LYGKDGASEGEVI-EAAKLANAHSFISALPEGYSTK 1149
+V Q+ ++ + +EN+ LYG GA E I E L + YS
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYS-- 133
Query: 1150 VGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--T 1207
GG ++R+ IAR+++ PE+L LDE T LD ++ V + +++L + T
Sbjct: 134 ---------GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 1208 TIIVAHRLSTI-KNADQISVIESGKIIEQGT 1237
++ H + + D++++I+ G+II +GT
Sbjct: 185 ILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 7e-20
Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 21/238 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ D+S D + D L + G +V LVG +G+GK+T++ I P +G +
Sbjct: 4 IDVSDLSV---EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGKDD-----ATMEEITRAAK 495
L+ G++++ L + +++ V Q+ +L F +R+ + G+ T E RAA
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA- 119
Query: 496 LSEAMSFISNLPERFET-QVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
+ AM ER Q +R + LSGG++QR+ ++RA+ + +LLLDE T++LD
Sbjct: 120 VERAM-------ERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172
Query: 554 ESENSVQEALDR-VMVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNP 609
+ E + R V G+T V H L R D + ++ ++ G ++++
Sbjct: 173 NHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
Length = 402 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 8e-20
Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 43/253 (16%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKS-TVLSLILRFYDPT------AGKVMVDGIDIKRLNLK 1090
D +L++ AG+++ALVG+SGSGKS T LS ILR P+ +G + G + + +
Sbjct: 27 DVSLQIEAGETLALVGESGSGKSVTALS-ILRLL-PSPPVVYPSGDIRFHGESLLHASEQ 84
Query: 1091 SLRK----HIALVQQEP--ALFATSIYENILY---------GKDGASEGEVI---EAAKL 1132
+LR IA++ QEP +L E LY ++ A+ GE++ + +
Sbjct: 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRRE-AARGEILNCLDRVGI 143
Query: 1133 ANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE 1192
A ++ P QLSGG++QRV IA A+L PE+L+ DE T+ALDV +
Sbjct: 144 RQAAKRLTDYPH-----------QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQ 192
Query: 1193 RVVQQALQRLMRK--RTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAY 1249
+ Q L+ L ++ + + H LS ++ AD+++V+++G+ +EQ ++L Y
Sbjct: 193 AQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPY 252
Query: 1250 F-KLINLQQRQDP 1261
KL+N + DP
Sbjct: 253 TQKLLNSEPSGDP 265
|
Length = 529 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 9e-20
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD----LKWLRQQI 460
L + G+ VA+VG SGSGKST+++++ +P SGE+ L G + LD + +
Sbjct: 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHV 90
Query: 461 GLVNQEPALFAT-TIRENI---LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
G V Q L T EN+ L + +++ + A L EA+ L +R
Sbjct: 91 GFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVG----LGKRLTHYPA- 145
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE---ALDRVMVGRTTV 573
QLSGG++QR+A++RA P +L DE T LD + + + + AL+R G T V
Sbjct: 146 ---QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR-ERGTTLV 201
Query: 574 VVAH 577
+V H
Sbjct: 202 LVTH 205
|
Length = 228 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-19
Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 23/257 (8%)
Query: 382 IEFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E KD+ YPS V + LDI AG++VA+VG SGSGKST+++++ +P SG
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 441 ILLDGNNIKGLDLKWL----RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAK 495
+ G ++ LD L R+ G + Q L + T +N+ + A + R +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV---EVPAVYAGLERKQR 121
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
L A + L E +V + QLSGGQ+QR++I+RA++ ++L DE T ALD+ S
Sbjct: 122 LLRAQELLQRLG--LEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 556 ENSVQEALDRVM-VGRTTVVVAHRLSTIRNAD-VIAVVQGRKIVKTGSHEELISNPNSAY 613
V L ++ G T ++V H A+ VI + G E++ NP +
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDG----------EIVRNPPAQE 229
Query: 614 AALVQLQEAASQQSNSS 630
V + S
Sbjct: 230 KVNVAGGTEPVVNTASG 246
|
Length = 648 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 1e-19
Identities = 61/204 (29%), Positives = 108/204 (52%), Gaps = 19/204 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ G+++A+ G +GSGKS+++ +I EP G+I G +I
Sbjct: 447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSP 493
Query: 465 QEPALFATTIRENILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
Q + TI++NI++G D+ + +A +L E I+ PE+ +T +GE GI LS
Sbjct: 494 QTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEED---IALFPEKDKTVLGEGGITLS 550
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLST 581
GGQ+ RI+++RA+ K+ + LLD + LD +E + E+ L ++M +T ++V +L
Sbjct: 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEH 610
Query: 582 IRNADVIAVVQGRKIVKTGSHEEL 605
++ AD I ++ G+ EL
Sbjct: 611 LKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 1e-19
Identities = 78/235 (33%), Positives = 123/235 (52%), Gaps = 33/235 (14%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
++L+ V SY + +V+ K +L V G+ + LVG SG GKST+L ++ T+G+
Sbjct: 3 GLKLQAVRKSYDGKTQVI--KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60
Query: 1077 VMVDGIDIKRLN-LKSLRKHIALVQQEPALFA-TSIYENILYG-KD-GASEGE----VIE 1128
+ + G + +N L+ + IA+V Q AL+ S+ EN+ YG K G + E V E
Sbjct: 61 IWIGG---RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAE 117
Query: 1129 AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
AA++ + P +LSGGQ+QRVA+ RA+++ P + L DE S LD
Sbjct: 118 AARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Query: 1189 VE---SERVVQQALQRLMRKRTT-IIVAH-RLSTIKNADQISVIESGKIIEQ-GT 1237
+ R+ Q L R R +TT + V H ++ + AD++ V+ G EQ GT
Sbjct: 167 AKLRVQMRLEIQRLHR--RLKTTSLYVTHDQVEAMTLADRVVVMNGGV-AEQIGT 218
|
Length = 356 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-19
Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 44/241 (18%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
L+G+ E KD + ++ G+ + ++G +G+GKST+L LI Y PT+GKV
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 1078 MVDGIDIKRLNLKSLRKHIAL-VQQEPALFATSIYENI-----LYGKDGA----SEGEVI 1127
V G + L I L +P L + ENI + G E+I
Sbjct: 85 KVTG-KVAPL--------IELGAGFDPEL---TGRENIYLRGLILGLTRKEIDEKVDEII 132
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
E A+L FI + YS+ G R+A + A P+ILLLDE +
Sbjct: 133 EFAEL---GDFIDQPVKTYSS-----------GMYARLAFSVATHVEPDILLLDEVLAVG 178
Query: 1188 DVESERVVQQALQRLM----RKRTTIIVAHRLSTIKNA-DQISVIESGKIIEQGTHSSLV 1242
D ++ L+RL + +T ++V+H L IK D+ +E G+I +G+ ++
Sbjct: 179 D---AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235
Query: 1243 E 1243
Sbjct: 236 P 236
|
Length = 249 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 29/220 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLV 463
L++ +G+IV L+G +G+GK+T +I P SG+ILLD +I L + K R IG +
Sbjct: 25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYL 84
Query: 464 NQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE-TQV-GERGIQ 520
QE ++F T+ +NI+ A +E + K +E + L E F T + +
Sbjct: 85 PQEASIFRKLTVEDNIM-----AVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYS 139
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALD----AESENSVQEALDR---VMVG---- 569
LSGG+++R+ I+RA+ NP +LLDE + +D + + ++ DR V++
Sbjct: 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV 199
Query: 570 RTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
R T+ + R I + V+A GS EE+++N
Sbjct: 200 RETLDICDRAYIISDGKVLA---------EGSPEEIVNNE 230
|
Length = 243 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (221), Expect = 2e-19
Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 7/199 (3%)
Query: 1050 ALVGQSGSGKSTVLSLILRFYDPTAG-----KVMVDGIDI-KRLNLKSLRKHIALVQQEP 1103
+L+G +GSGK+T L + R D +G V++ G I ++ R+ + ++ Q P
Sbjct: 51 SLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110
Query: 1104 ALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163
F SI +N+L G E +A A L + ++ + +LSGGQ+Q
Sbjct: 111 NPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQ 170
Query: 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLS-TIKNAD 1222
+ +AR + NPE+LLLDE TSALD + +++ ++ L + T IIV H L+ + +D
Sbjct: 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISD 230
Query: 1223 QISVIESGKIIEQGTHSSL 1241
+ ++ G+++E+G L
Sbjct: 231 RAALFFDGRLVEEGPTEQL 249
|
Length = 276 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 23/209 (11%)
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA- 1097
+ +VRAG+ + LVG +G+GKST+L+ + +G + G ++ + L +H A
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLAR-MAGMTSGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 1098 LVQQEPALFATSIYENI-LYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQ 1156
L QQ+ FA ++ + L+ D + + A K+G Q
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALA-----------LDDKLGRSTNQ 125
Query: 1157 LSGGQKQRVAIARAVLK-----NP--EILLLDEATSALDVESERVVQQALQRLMRK-RTT 1208
LSGG+ QRV +A VL+ NP ++LLLDE ++LDV + + + L L ++
Sbjct: 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAI 185
Query: 1209 IIVAHRLS-TIKNADQISVIESGKIIEQG 1236
++ +H L+ T+++A + +++ GK++ G
Sbjct: 186 VMSSHDLNHTLRHAHRAWLLKRGKLLASG 214
|
Length = 248 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 19/195 (9%)
Query: 1050 ALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG---IDI-KRLNLKSLRKHIALVQQEPAL 1105
A+ G+SG+GK+++++ I P G+++++G D K + L ++ I V Q+ L
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87
Query: 1106 FA-TSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164
F + N+ YG + + + L + P LSGG+KQR
Sbjct: 88 FPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQR 136
Query: 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK-RTTII-VAHRLSTI-KNA 1221
VAI RA+L PE+LL+DE ++LD+ +R + L+RL R+ I+ V+H L I + A
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLA 196
Query: 1222 DQISVIESGKIIEQG 1236
D++ V+E GK+ G
Sbjct: 197 DRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-19
Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 18/233 (7%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ R + Y V + K + + AG+ AL+G +G+GKST++ +I P +G +
Sbjct: 12 LCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1078 MVDGIDIKRLN-LKSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANA 1135
+ G RL K+ + I LV QEP LF S+ ENIL+G LA
Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD-VESERV 1194
+ S +V +R Q V I R ++++ IL+LDE T++L E+ER+
Sbjct: 129 GCQLDLDSSAGSLEVADR---------QIVEILRGLMRDSRILILDEPTASLTPAETERL 179
Query: 1195 VQQALQRLMRKRTTII-VAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245
+ ++ L+ + I+ ++H+L I+ AD+ISV+ G I G + L ++
Sbjct: 180 FSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231
|
Length = 510 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 17/208 (8%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
V D + G+I L+G +G+GK+T I +I P SGE+L DG +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA--- 68
Query: 456 LRQQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE-TQ 513
R +IG + +E L+ + + ++Y + K EA I ER E ++
Sbjct: 69 -RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGL-------KKEEARRRIDEWLERLELSE 120
Query: 514 VGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRT 571
+ + +LS G +Q++ A++ +P +L+LDE S LD + +++ + + G+T
Sbjct: 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 572 TVVVAHRLSTIRNA--DVIAVVQGRKIV 597
++ H++ + V+ + +GR ++
Sbjct: 181 VILSTHQMELVEELCDRVLLLNKGRAVL 208
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 3e-19
Identities = 65/179 (36%), Positives = 98/179 (54%), Gaps = 17/179 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQQIGL 462
L I G+ ++L+G SG GKST+++LI +P SG ++L+G I G D + Q L
Sbjct: 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSL 65
Query: 463 VNQEPALFATTIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
+ P L T+RENI D + + R A + E ++ + L E + + G Q
Sbjct: 66 L---PWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALV-GLTEAADKRPG----Q 114
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAH 577
LSGG KQR+AI+RA+ P +LLLDE ALDA + ++QE L ++ T ++V H
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI---LRFYDPTAGKVMVDGIDIKR 1086
I D +L V +G+ MA++G SGSGK+T+L I + T+G+++ +G K
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 1087 LNLKSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEG 1145
+K +A V+Q+ L ++ E + Y A L +
Sbjct: 77 ---DQFQKCVAYVRQDDILLPGLTVRETLTY------------TAILRLPRKS----SDA 117
Query: 1146 YSTKV---------------GERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
K G +SGG+++RV+IA +L +P++L+LDE TS LD
Sbjct: 118 IRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177
Query: 1191 SERVVQQALQRLMRK-RTTIIVAH--RLSTIKNADQISVIESGKIIEQG 1236
+ + L +L R+ R I+ H R + D+I ++ SG+I+ G
Sbjct: 178 TALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 3e-19
Identities = 66/199 (33%), Positives = 110/199 (55%), Gaps = 26/199 (13%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI---KGLDLKWLRQQIGLVNQE 466
G++ L G SG+GKST++ LI P +G+I G++I K ++ +LR+QIG++ Q+
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 467 PALFAT-TIREN-----ILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
L T+ +N I+ G A+ ++I R ++S A+ + L + IQ
Sbjct: 88 HHLLMDRTVYDNVAIPLIIAG---ASGDDIRR--RVSAALDKVGLL-----DKAKNFPIQ 137
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALD-AESENSVQ--EALDRVMVGRTTVVVAH 577
LSGG++QR+ I+RA+V P++LL DE T LD A SE ++ E +R VG T ++ H
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATH 195
Query: 578 RLSTI--RNADVIAVVQGR 594
+ I R+ ++ + G
Sbjct: 196 DIGLISRRSYRMLTLSDGH 214
|
Length = 222 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 3e-19
Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 36/222 (16%)
Query: 1044 RAGKSMALVGQSGSGKSTVLSLILRFYDPT----AGKVMVDGIDIKRLNLKSLRKHIALV 1099
+ G+ +A++G SG+GK+T+++ L F P +G V+++G ++ K +R A V
Sbjct: 49 KPGELLAVMGSSGAGKTTLMN-ALAFRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYV 104
Query: 1100 QQEPALFAT-SIYENILY------GKDGASEG------EVIEAAKLANAHSFISALPEGY 1146
QQ+ T ++ E++++ + + EV++A L +
Sbjct: 105 QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN--------- 155
Query: 1147 STKVGERGVQ--LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR 1204
T++G G LSGG+++R+A A +L +P +L DE TS LD V Q L+ L +
Sbjct: 156 -TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ 214
Query: 1205 KRTTIIVA-HRLST--IKNADQISVIESGKIIEQGTHSSLVE 1243
K TII H+ S+ + D+I ++ G++ G+ V
Sbjct: 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 4e-19
Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 20/268 (7%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G + KD++ Y + A+ + I G+ V L+G +GSGKST++S R G
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI-LYGKDDATMEEITRAAKLSE 498
+I +DG + + L+ R+ G++ Q+ +F+ T R+N+ YGK + EEI + A+
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVG 116
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
S I P + + + + G LS G KQ + ++R+++ ILLLDE ++ LD +
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 559 VQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618
+++ L + T ++ HR+ + V++ K+ + S ++L++ +
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSH------- 229
Query: 619 LQEAAS--------QQSNSSQCPNMGRP 638
++A S + NSS+ RP
Sbjct: 230 FKQAISPSDRLKLFPRRNSSKSKRKPRP 257
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-19
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 36/244 (14%)
Query: 1018 IELRGVHFSYPSRP--------EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
+++ + ++P R V+ K+ + +R G+++ LVG+SGSGKST +LR
Sbjct: 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335
Query: 1070 YDPTAGKVMVDGIDIKRLNLKSL---RKHIALVQQEP--ALFATSIYENILYGKDGASEG 1124
+ G++ DG + LN + L R I +V Q+P +L I+ EG
Sbjct: 336 I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII------EEG 388
Query: 1125 EVIEAAKLANAH---SFISALPE-GYSTKVGER-GVQLSGGQKQRVAIARAVLKNPEILL 1179
+ L+ A I+ + E G + R + SGGQ+QR+AIARA++ P +++
Sbjct: 389 LRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLII 448
Query: 1180 LDEATSALDVESERVVQQA----LQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKI 1232
LDE TS+LD + VQ L+ L +K + ++H L ++ Q+ V+ G++
Sbjct: 449 LDEPTSSLD----KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV 504
Query: 1233 IEQG 1236
+EQG
Sbjct: 505 VEQG 508
|
Length = 529 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 5e-19
Identities = 62/238 (26%), Positives = 117/238 (49%), Gaps = 19/238 (7%)
Query: 382 IEFKDVSFCYPSRPD----VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
I+ K+VS+ Y S + +A+ D L++ G+ + ++G +GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLAL-DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 438 SGEILLDGNNIKGLDLKW-LRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAA 494
G++ +DG + + W +R + G+V Q P + AT + E++ +G ++ +
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123
Query: 495 KLSEAMSFISNLPE--RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
++ E++ + + E R + LSGGQKQR+AI+ + P ++ DE T+ LD
Sbjct: 124 RVDESLKKV-GMYEYRRHAPHL------LSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Query: 553 AESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608
V + + G T +++ H + AD I V+ K+V G+ +E+
Sbjct: 177 PSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234
|
Length = 280 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 5e-19
Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 18/234 (7%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444
++VSF P R + L PAGK+ L+G +GSGKST++ ++ R P GEILLD
Sbjct: 15 RNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 445 GNNIKGLDLKWLRQQIG-LVNQEPALFATTIRENILYGKD--DATMEEITRA--AKLSEA 499
++ K +++ L Q PA T+RE + G+ + A K+ EA
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131
Query: 500 MSFISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
+S + P + R + LSGG++QR I+ + ++ LLLDE TSALD +
Sbjct: 132 ISLVGLKP------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185
Query: 559 VQEALDRV--MVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNP 609
V + R+ G T + V H ++ R D + ++G +++ G+ EL+
Sbjct: 186 VLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 6e-19
Identities = 62/238 (26%), Positives = 120/238 (50%), Gaps = 31/238 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ +++++ Y ++I G++ A++GG+G+GKST+ + +P SG I
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 442 LLDGNNI----KGLDLKWLRQQIGLVNQEP--ALFATTIRENILYG------KDDATMEE 489
L DG I KGL +K LR+ +G+V Q+P LF+ ++ +++ +G +D +
Sbjct: 64 LFDGKPIDYSRKGL-MK-LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR 121
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
+ A K + + + + P LS GQK+R+AI+ +V P +L+LDE T+
Sbjct: 122 VDNALKRT-GIEHLKDKPTHC----------LSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170
Query: 550 ALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI--RNADVIAVVQGRKIVKTGSHE 603
LD + + + L + +G T ++ H + + +V + +GR I++ E
Sbjct: 171 GLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228
|
Length = 283 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 6e-19
Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 6/257 (2%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G ++ + ++ Y A+ + G+ V L+G +GSGKST++S + R G
Sbjct: 1216 GQMDVQGLTAKYTEAGR-AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST-EG 1273
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
EI +DG + + L+ R+ G++ Q+ +F+ T R+N L + + EEI + A+
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN-LDPYEQWSDEEIWKVAEEVGL 1332
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
S I P++ + + + G LS G KQ + ++R+I+ ILLLDE ++ LD + +
Sbjct: 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI---SNPNSAYAAL 616
++ L + T ++ HR+ + V++G + + S ++L+ S A +A
Sbjct: 1393 RKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAA 1452
Query: 617 VQLQEAASQQSNSSQCP 633
+L+ + NSS+
Sbjct: 1453 DRLKLFPLHRRNSSKRK 1469
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 6e-19
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 42/243 (17%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-------------- 441
++ + KI ++G SGSGKST+++ + G I
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 442 --LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYG-------KDDATMEEI 490
+ + + K + K LR+++ +V Q P LF TI ++I++G K +A
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---- 153
Query: 491 TRAAKLSEAMSFISNLPER--FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
A M + ER F LSGGQK+R+AI+ + P IL+ DE T
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPFG---------LSGGQKRRVAIAGILAIQPEILIFDEPT 204
Query: 549 SALDAESENS-VQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606
+ LD + E+ +Q LD +T V+ H + + AD + V+ KI+KTG+ E+
Sbjct: 205 AGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF 264
Query: 607 SNP 609
++
Sbjct: 265 TDQ 267
|
Length = 320 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 7e-19
Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ G++ +G +G+GK+T I ++ P SG + G ++ + + +R+ IG+V
Sbjct: 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVP 72
Query: 465 QEPALF-ATTIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
Q ++ T REN+ LYG EE RA +L E L E + VG
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEE--RAEELLELFE----LGEAADRPVG--- 123
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAH 577
SGG ++R+ I+ +++ P +L LDE T+ LD + ++ G T ++ H
Sbjct: 124 -TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
Query: 578 RLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
+ D IA++ +I+ G+ EEL
Sbjct: 183 YMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 8e-19
Identities = 70/252 (27%), Positives = 125/252 (49%), Gaps = 19/252 (7%)
Query: 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGG 418
IER + +K + I+ VS Y + + + + +G+ L+G
Sbjct: 19 IERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGP 75
Query: 419 SGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIREN 477
+G+GKST+ +I P +G+I + G + + R +IG+V Q L T+REN
Sbjct: 76 NGAGKSTIARMILGMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVREN 134
Query: 478 IL-YGKDDATMEEITRAAKLSEAMSFISNLPE--RFETQVGERGIQLSGGQKQRIAISRA 534
+L +G+ + + EA+ I +L E R E++ R LSGG K+R+ ++RA
Sbjct: 135 LLVFGR------YFGMSTREIEAV--IPSLLEFARLESKADARVSDLSGGMKRRLTLARA 186
Query: 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTI-RNADVIAVVQ 592
++ +P +L+LDE T+ LD + + + E L ++ G+T ++ H + R D + V++
Sbjct: 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLE 246
Query: 593 -GRKIVKTGSHE 603
GRKI + H
Sbjct: 247 AGRKIAEGRPHA 258
|
Length = 340 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 8e-19
Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 24/194 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+++ ++ Y +P +D NL + +G+ + ++G SG GK+T+L+LI F G +
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHS 1137
+DG K + + + Q E L ++ +N+ +G A V + +L AH
Sbjct: 59 TLDG---KPVEGPGAERGVVF-QNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQ 111
Query: 1138 FISALPEGYSTKVGERGV------QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
+ KVG G QLSGGQ+QRV IARA+ NP++LLLDE ALD +
Sbjct: 112 MLK--------KVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163
Query: 1192 ERVVQQALQRLMRK 1205
+Q L +L ++
Sbjct: 164 REQMQTLLLKLWQE 177
|
Length = 255 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 8e-19
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 15/181 (8%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS---LRK 1094
F++ R G+ L G SG+GKST+L LI P+AGK+ G DI RL + LR+
Sbjct: 22 TFHM--RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79
Query: 1095 HIALV-QQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPE--GYSTKVG 1151
I ++ Q L ++Y+N+ + +I A + +SA + G K
Sbjct: 80 QIGMIFQDHHLLMDRTVYDNV-------AIPLIIAGASGDDIRRRVSAALDKVGLLDKAK 132
Query: 1152 ERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIV 1211
+QLSGG++QRV IARAV+ P +LL DE T LD + + + R T+++
Sbjct: 133 NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLM 192
Query: 1212 A 1212
A
Sbjct: 193 A 193
|
Length = 222 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 9e-19
Identities = 113/516 (21%), Positives = 214/516 (41%), Gaps = 66/516 (12%)
Query: 744 FCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRL 803
F ++ ++ I L +G+ ++R + IL + + + S+ +LA L
Sbjct: 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLA-GL 111
Query: 804 ESDATLLRTIVVDRSTI--LIQNFGLVTASFVIAFILNWRITLV-VVATYPLIISGHISE 860
SD +R I S + L+Q L S L+ ++ L+ VV I G +
Sbjct: 112 TSD---VRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLM 168
Query: 861 KLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKV----LELYSRELVEPSKRS 916
++ A + ++ +T+ E + E L P +
Sbjct: 169 ARVYKHMA--------AARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQE 220
Query: 917 FIRGQIAG-IFYGISQFFI----FSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTAL 971
+ I F+ ++ + GL W + + AS +VL+
Sbjct: 221 YRHHIIRANTFHLLAVNWSNIMLLGLIGLVFW---LALSLGWASTNVAATIVLVLLFLRT 277
Query: 972 AMGETLALVPDLL-------KGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVH 1024
+ + ++P LL K ++ + ++ + Q D T+ELR V
Sbjct: 278 PLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWK--------TLELRNVR 329
Query: 1025 FSYPSRPEVVIFK--DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI 1082
F+Y F NL ++ G+ + L+G +GSGKST+ L+ Y P +G++++DG
Sbjct: 330 FAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385
Query: 1083 DIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEA--AKLANAHSFIS 1140
+ L+ RK + V + LF L G +G + ++IE +L AH +
Sbjct: 386 PVSAEQLEDYRKLFSAVFSDYHLFDQ------LLGPEGKASPQLIEKWLQRLELAHK--T 437
Query: 1141 ALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQ 1200
+L +G + ++LS GQK+R+A+ A+L+ +IL+LDE + D R Q L
Sbjct: 438 SLNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLL 492
Query: 1201 RLMRK--RTTIIVAHRLSTIKNADQISVIESGKIIE 1234
L+++ +T ++H +AD++ + +G++ E
Sbjct: 493 PLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 31/220 (14%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLV 463
L + G+IV L+G +G+GK+T +I +P SG+ILLDG +I L + K R IG +
Sbjct: 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
Query: 464 NQEPALFAT-TIRENILYGKDDATMEEI--TRAAKLSEAMSFISNLPERFETQVGERGIQ 520
QE ++F T+ ENIL A +E ++ + + + +
Sbjct: 81 PQEASIFRKLTVEENIL-----AVLEIRGLSKKEREEKLEELLEEF--HITHLRKSKASS 133
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALD----AESENSVQEALDR---VMVG---- 569
LSGG+++R+ I+RA+ NP LLLDE + +D + + ++ DR V++
Sbjct: 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193
Query: 570 RTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNP 609
R T+ + R I V+A G+ EE+ +N
Sbjct: 194 RETLSITDRAYIIYEGKVLA---------EGTPEEIAANE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 1e-18
Identities = 72/245 (29%), Positives = 118/245 (48%), Gaps = 20/245 (8%)
Query: 1016 GTIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073
I L V ++Y + E + +L + K ++G +GSGKST++ L
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 1074 AGKVMVDGIDI-----KRLNLKSLRKHIALVQQEP--ALFATSIYENILYG--KDGASEG 1124
G+ +V I K +K LRK I LV Q P LF +I ++I +G G ++
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 1125 EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEAT 1184
E + K+ + LPE Y + +LSGGQK+RVA+A + + L+LDE T
Sbjct: 125 EAYK--KVPELLKLVQ-LPEDYVKR---SPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 1185 SALDVESERVVQQALQRLMR--KRTTIIVAHRLSTI-KNADQISVIESGKIIEQGTHSSL 1241
LD + E +RL + K+ I+V H + + + AD++ V+ GK+I G+ +
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 1242 VENED 1246
N++
Sbjct: 239 FSNQE 243
|
Length = 289 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 1e-18
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 29/193 (15%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV----DGIDIKRL--- 1087
+ K+ +L V AG+ +AL G SG+GKST+L + Y P +G+++V +D+ +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1088 NLKSLRKH-IALVQQ----EPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISAL 1142
+ +R+ I V Q P + A + L + G A+ A I
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLL-ERGVPREAARARARELLARLNIP-- 139
Query: 1143 PEGYSTKVGERGVQL-----SGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
ER L SGG++QRV IAR + + ILLLDE T++LD + +VV +
Sbjct: 140 ---------ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE 190
Query: 1198 ALQRLMRKRTTII 1210
+ + +I
Sbjct: 191 LIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 46/228 (20%)
Query: 382 IEFKDVSFCYPS-------------------RPDVAIFDKFCLDIPAGKIVALVGGSGSG 422
IE ++VS YP+ + ++P G+ + L+G +G+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 423 KSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI---- 478
KST++ L+ Y P SG + + G L L G P L T RENI
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL-----GGGF---NPEL---TGRENIYLNG 109
Query: 479 -LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537
L G ++E K+ E + F S L + + V S G K R+A + A
Sbjct: 110 RLLGLSRKEIDE-----KIDEIIEF-SELGDFIDLPVKT----YSSGMKARLAFAIATAL 159
Query: 538 NPSILLLDEATSALDAESENSVQEAL-DRVMVGRTTVVVAHRLSTIRN 584
P ILL+DE + DA + Q L + + G+T ++V+H S+I+
Sbjct: 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-18
Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 39/199 (19%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I +++S Y RP + + L + G+ + LVG +G+GKST++ ++ EP SGE+
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENIL--YGKDDATMEEITRAA---- 494
++G ++QEP L T+ + ++ +G+ + E+ A
Sbjct: 61 TRPKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 495 -KLSEAMSFISNLPERFETQVGERGI-----------------QLSGGQKQRIAISRAIV 536
E ++ + L E + E LSGG ++R+A++RA++
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 537 KNPSILLLDEATSALDAES 555
+ P +LLLDE T+ LD ES
Sbjct: 170 EEPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 33/217 (15%)
Query: 1039 FNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA- 1097
+ +VRAG+ + LVG +G+GKST+L+ + P +G + G ++ + L +H A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1098 LVQQEPALFATSIYENI-LYGKDGASEG-------EVIEAAKLANAHSFISALPEGYSTK 1149
L QQ+ FA +++ + L+ D EV EA L + K
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD--------------K 119
Query: 1150 VGERGVQLSGGQKQRVAIARAVLK-----NPE--ILLLDEATSALDVESERVVQQALQRL 1202
+G QLSGG+ QRV +A VL+ NP +LLLDE ++LDV + + + L L
Sbjct: 120 LGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL 179
Query: 1203 MRKRTTIIVA-HRLS-TIKNADQISVIESGKIIEQGT 1237
++ ++++ H L+ T+++AD++ +++ GK++ G
Sbjct: 180 CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
Length = 248 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 2e-18
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 50/207 (24%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095
+D + +VRAG+ + + G G+G++ + + P +G++ +DG + R + + +
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 1096 -IALV----QQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKV 1150
IA V ++E + S+ ENI AL
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENI--------------------------ALS------- 102
Query: 1151 GERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTII 1210
LSGG +Q+V +AR + ++P +L+LDE T +DV ++ + + ++ L ++
Sbjct: 103 ----SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 1211 VAHRLST-----IKNADQISVIESGKI 1232
+ +S+ + D+I V+ G+I
Sbjct: 159 L---ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 58/219 (26%), Positives = 115/219 (52%), Gaps = 23/219 (10%)
Query: 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462
F L G+ +A++G +GSGKST+ ++ EP SGEIL++ + + D + ++I +
Sbjct: 34 FTLR--EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 463 VNQEPALFATTIREN---ILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGER 517
+ Q+P + R IL + + +E R ++ E + + LP+
Sbjct: 92 IFQDPNT-SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH-- 148
Query: 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV------GRT 571
L+ GQKQR+A++RA++ P I++ DEA ++LD S++ L +M+ G +
Sbjct: 149 --MLAPGQKQRVALARALILRPKIIIADEALASLDM----SMRSQLINLMLELQEKQGIS 202
Query: 572 TVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
+ V + I++ +D + V+ ++V+ GS +++++P
Sbjct: 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 3e-18
Identities = 53/212 (25%), Positives = 110/212 (51%), Gaps = 11/212 (5%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096
K + +R G+++A++G++GSGKST+ ++ +PT+G+++++ + + K I
Sbjct: 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRI 89
Query: 1097 ALVQQEP--ALFATSIYENILYG--KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGE 1152
++ Q+P +L IL + ++ + LP+ +
Sbjct: 90 RMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH- 148
Query: 1153 RGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTII 1210
L+ GQKQRVA+ARA++ P+I++ DEA ++LD+ + + L K+ + I
Sbjct: 149 ---MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205
Query: 1211 VAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241
V + IK+ +DQ+ V+ G+++E+G+ + +
Sbjct: 206 VTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 3e-18
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 14/226 (6%)
Query: 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI 1082
H S V +D + ++ G+ + +G +G+GKST L ++ PT+GKV V+G
Sbjct: 30 FHRKERSIEAV---QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK 86
Query: 1083 DIKRLNLKSLRKHIALV--QQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFIS 1140
D + + I LV Q+ + +++ K + A +L
Sbjct: 87 D-PFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLD---FLTE 142
Query: 1141 ALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQ 1200
L + +LS GQ+ R +A A+L P++L LDE T LDV ++ +++ L+
Sbjct: 143 IL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLK 200
Query: 1201 RLMRKRTTIIV--AHRLSTI-KNADQISVIESGKIIEQGTHSSLVE 1243
+R ++ H I D++ +I+ G+++ GT + L E
Sbjct: 201 EYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246
|
Length = 325 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-18
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 36/234 (15%)
Query: 405 LDIPAGKIVALVGGSGSGKS----TVISLI-ERFYEPLSGEILLDGNNIKGLDLKWLR-- 457
DI AG+ +ALVG SGSGKS +++ L+ SG IL DG ++ + LR
Sbjct: 31 FDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGV 90
Query: 458 --QQIGLVNQEP--AL---------FATTIRENILYGKDDAT--MEEITRAAKLSEAMSF 502
+IG++ QEP +L A +R + + A E+ + E
Sbjct: 91 RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR 150
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
+ P +LSGGQ+QR+ I+ A+ P +L+ DE T+ALD + + +
Sbjct: 151 LDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL 199
Query: 563 LDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
L + +G + + H L +R AD + V+Q +IV+TG+ E L + P Y
Sbjct: 200 LKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPY 253
|
Length = 534 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 4e-18
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 65/199 (32%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L + G++ AL+G +G+GKST++ ++ Y+P SGEIL V+
Sbjct: 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL--------------------VD 60
Query: 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI----Q 520
+ FA+ R A+ GI Q
Sbjct: 61 GKEVSFASP------------------RDAR--------------------RAGIAMVYQ 82
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRL 579
LS G++Q + I+RA+ +N +L+LDE T+AL + + + R+ G + ++HRL
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 580 STIRN-ADVIAVV-QGRKI 596
+ AD + V+ GR +
Sbjct: 143 DEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 4e-18
Identities = 60/219 (27%), Positives = 110/219 (50%), Gaps = 20/219 (9%)
Query: 1029 SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN 1088
+ + +L VR G + LVG +G+GK+T+L I PTAG V+V G D++ L+
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 1089 LKSLRKHIALVQQEPAL-FATSIYENILYGK-------DGASEGEVIEAAKLANAHSFIS 1140
++ + +A V Q+ +L F + + + G+ D +E + +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTE---------TDRAAVER 122
Query: 1141 ALPEGYSTKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL 1199
A+ + +R V LSGG++QRV +ARA+ + +LLLDE T++LD+ + + +
Sbjct: 123 AMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELV 182
Query: 1200 QRLMRKRTTIIVA-HRLS-TIKNADQISVIESGKIIEQG 1236
+RL+ T + A H L + D++ ++ G++ G
Sbjct: 183 RRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 6e-18
Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 25/239 (10%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LK 454
+ L I G+ V L+G SG GKST+ L+ +P G + G ++ LD +
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 455 WLRQQIGLVNQE-PALF--ATTIRENIL-----YGKDDATMEEITRAAKLSEAMSFISNL 506
R+ + LV Q+ P+ T+R+ I D + E+ R A+L + + S
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDES-EQKARIAELLDMVGLRSED 143
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD-- 564
++ Q LSGGQ QRI I+RA+ P +++LDEA S LD + + E L
Sbjct: 144 ADKLPRQ-------LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
Query: 565 RVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622
+ G + + H L + +AV+ +IV+ +L+S + A LQ A
Sbjct: 197 QQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS---FKHPAGRNLQSA 252
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 7e-18
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 20/193 (10%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS--- 1091
+ + + + G+ MA+VG SGSGKST+L L+ PT+G V+ +G + +L+ +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1092 LRKH-IALVQQEPALFAT-SIYENI----LYGKDGASEGEVIEAAKLANAHSFISALPEG 1145
LR + + Q L + EN+ L GK +E + A ++A+ G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-------SRALEMLAAV--G 134
Query: 1146 YSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK 1205
+ R +LSGG++QRVAIARA++ NP ++L DE T LD + + Q L L R
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 1206 RTT--IIVAHRLS 1216
+ T ++V H L
Sbjct: 195 QGTAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 8e-18
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 24/184 (13%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL------DLKWLRQQIGLV 463
G+++A+VG SGSGKST++ L+ P SG+++ +G + L +L+ Q++G +
Sbjct: 35 GEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR--NQKLGFI 92
Query: 464 NQEPALFAT-TIRENI----LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
Q L T EN+ L GK E +RA ++ A+ E + R
Sbjct: 93 YQFHHLLPDFTALENVAMPLLIGKK-KPAEINSRALEMLAAVGL--------EHRANHRP 143
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT--VVVA 576
+LSGG++QR+AI+RA+V NP ++L DE T LDA + +S+ + L + + T +VV
Sbjct: 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203
Query: 577 HRLS 580
H L
Sbjct: 204 HDLQ 207
|
Length = 233 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (208), Expect = 1e-17
Identities = 61/231 (26%), Positives = 125/231 (54%), Gaps = 16/231 (6%)
Query: 382 IEFKDVSFCY-PSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
I+F+ V++ Y P+ P A+FD L++ G AL+G +GSGKST++ + +P
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 439 GEI----LLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITR 492
G++ ++ + K ++K +R+++G+V Q P LF T+ +++ +G + + +
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
+E + + E +E + +LSGGQ +R+AI+ + P +L+LDE T+ LD
Sbjct: 121 EKIAAEKLEMVGLADEFWE----KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 553 AESENSVQEALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601
++ + + + + G+T V+V H + + + AD + +++ I+ G+
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
Length = 288 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 1e-17
Identities = 69/206 (33%), Positives = 113/206 (54%), Gaps = 20/206 (9%)
Query: 1040 NLKVRAGKSMALVGQSGSGKST---VLSLILRF--YDPTAGKVMVDGIDIKRLNLK-SLR 1093
+LKVRAG+ ++L G++G+GKST VLS + Y+ G+++ +G +++ N++ + R
Sbjct: 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE---GEIIFEGEELQASNIRDTER 81
Query: 1094 KHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYS--TKV 1150
IA++ QE AL S+ ENI G + G + A A ++ L + T V
Sbjct: 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV 141
Query: 1151 GERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TT 1208
G L GQ+Q V IA+A+ K +L+LDE T++L ESE V + R ++
Sbjct: 142 GN----LGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIAC 196
Query: 1209 IIVAHRLSTIKN-ADQISVIESGKII 1233
I ++H+L+ +K +D I VI G+ I
Sbjct: 197 IYISHKLNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 22/222 (9%)
Query: 388 SFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN 447
F + A+ D + G++ L+G +G+GK+T + ++ EP +G +DG +
Sbjct: 10 RFRDVKKTVQAV-DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD 68
Query: 448 IKGLDLKWLRQQIGLVNQEPALFA-TTIRENI-----LYG-KDDATMEEITRAAKLSEAM 500
+ + R+++G V+ L+ T REN+ LYG K D + A
Sbjct: 69 VVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG-- 125
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ L +R R S G +Q++AI+RA+V +P +LLLDE T+ LD + +++
Sbjct: 126 --MEELLDR-------RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 561 EALDRVMVGRTTVVVA-HRLSTI-RNADVIAVVQGRKIVKTG 600
E + ++ ++ + H + + R D + V+ ++V G
Sbjct: 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-17
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 30/227 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+EF++VS Y + I G +A+VG +G+GKST++ L+ PLSG +
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
+ G +K IG +Q R+ + D T+ E
Sbjct: 380 KV-GETVK----------IGYFDQH--------RDELD---PDKTVLEELSEGFPDGDEQ 417
Query: 502 FISNLPERF---ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
+ RF + LSGG+K R+ +++ +++ P++LLLDE T+ LD ES +
Sbjct: 418 EVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477
Query: 559 VQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604
++EAL G T ++V+H + A I +V+ + G +E+
Sbjct: 478 LEEALLDFE-G-TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYED 522
|
Length = 530 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 18/210 (8%)
Query: 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQIGL 462
L++P G++ ++G +G GK+T++ + SG I LDG +I L R I
Sbjct: 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79
Query: 463 VNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF---ETQVGERG 518
V Q +F T+ EN+L G + + I E F + +G RG
Sbjct: 80 VPQGREIFPRLTVEENLLTGLA-------ALPRRSRKIPDEI---YELFPVLKEMLGRRG 129
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVVVA 576
LSGGQ+Q++AI+RA+V P +LLLDE T + + + R+ G ++V
Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE 189
Query: 577 HRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
L R AD V++ ++V +G+ +EL
Sbjct: 190 QYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 2e-17
Identities = 69/237 (29%), Positives = 120/237 (50%), Gaps = 30/237 (12%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+F++V Y D + D + G+ L+G +G+GK+T + ++ P +G I
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 442 LLDGNNIKGLDLKWLRQQIGLV----NQEPALFATTIRENIL-----YGKDDATMEEITR 492
L G + + RQ++G+V N +P T+REN+L +G A
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARA--L 118
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
L E + L + + +VGE LSGG K+R+ ++RA+V +P +L+LDE T+ LD
Sbjct: 119 VPPLLE----FAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
Query: 553 AESENSVQEALDRVMV-GRTTVVVAHRLSTI-RNADVIAVVQ-GRKIVKTGSHEELI 606
++ + + E L ++ G+T ++ H + R D + V++ GRKI + G+ LI
Sbjct: 171 PQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE-GAPHALI 226
|
Length = 306 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-17
Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 25/216 (11%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI----KGLDLKWLRQQI 460
L +PA I A+ G SG+GK+++I+ I P G I+L+G + KG+ L +++I
Sbjct: 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78
Query: 461 GLVNQEPALFA-TTIRENILYG---KDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
G V Q+ LF +R N+ YG A ++I + I L +R+
Sbjct: 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVA-------LLGIEPLLDRYP----- 126
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVV 574
LSGG+KQR+AI RA++ P +LL+DE ++LD + + L+R+ + +
Sbjct: 127 --GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILY 184
Query: 575 VAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNP 609
V+H L I R AD + V++ K+ G EE+ ++
Sbjct: 185 VSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
Length = 352 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 2e-17
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 1031 PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT---AGKVMVDGIDIKRL 1087
P + + N + G+ + L+G SG GKST+LS ++ G++ ++ +RL
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE---QRL 69
Query: 1088 N-LKSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEG 1145
+ L + ++ I ++ Q+ LF S+ +N+L+ +G ANA AL
Sbjct: 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGN--ARRNAANA-----AL--- 119
Query: 1146 YSTKVGERGV------QLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
+ G G LSGGQ+ RVA+ RA+L P+ LLLDE S LDV
Sbjct: 120 --ERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG-- 450
R + +F + AG+ + + G +G+GK+T++ ++ P +GE+ G I+
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 451 ----LDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNL 506
L +L Q G+ + L T EN+ + + AA + EA+
Sbjct: 71 ESYHQALLYLGHQPGI---KTEL---TALENLHFWQR---FHGSGNAATIWEAL------ 115
Query: 507 PERFETQVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
QVG G+ QLS GQ++R+A++R + + +LDE +ALD E
Sbjct: 116 -----AQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV---- 166
Query: 561 EALDRVMVGRTT 572
L +M
Sbjct: 167 ALLTALMAAHAA 178
|
Length = 209 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 3e-17
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
LD+ G+ + LVG SG GKST++ ++ SGEI + G + L+ + I +V
Sbjct: 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVF 82
Query: 465 QEPALFA-TTIRENILYGKDDATM--EEITR----AAKLSEAMSFISNLPERFETQVGER 517
Q AL+ ++REN+ YG M EI AA++ E + L +R +
Sbjct: 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE----LEPLLDR-------K 131
Query: 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
+LSGGQ+QR+A+ RAIV+ P++ L DE S LDA
Sbjct: 132 PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 3e-17
Identities = 80/288 (27%), Positives = 142/288 (49%), Gaps = 38/288 (13%)
Query: 998 DRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGS 1057
++ T V G+ ++ N+ LR + +R EV + + + G++++LVG+SGS
Sbjct: 303 EQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTR-EVHAVEKVSFDLWPGETLSLVGESGS 361
Query: 1058 GKSTVLSLILRFYDPTAGKVMVDGIDIKRLN---LKSLRKHIALVQQEPALFAT------ 1108
GKST +LR + G+++ +G I L+ L++LR+ I + Q+P +A+
Sbjct: 362 GKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP--YASLDPRQT 419
Query: 1109 ---SIYE-----NILYGKDGASE-GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSG 1159
SI E +L GK A+ ++E L H++ P + SG
Sbjct: 420 VGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW--RYPH-----------EFSG 466
Query: 1160 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTIIVAHRLST 1217
GQ+QR+ IARA+ NP++++ DEA SALDV + L L R + ++H ++
Sbjct: 467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV 526
Query: 1218 IKN-ADQISVIESGKIIEQGTHSSLVENEDGAYF-KLINLQQRQDPQH 1263
++ + +++V+ G+I+E G ++ EN Y KL+ DP
Sbjct: 527 VERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAAVPVADPSR 574
|
Length = 623 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 4e-17
Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 23/217 (10%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKST---VISLIERFYEPLSGEILLDGNNIKGLDL-K 454
I L + G++ A++G +GSGKST I + YE GEIL DG +I L +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPDE 77
Query: 455 WLRQQIGLVNQEPALFA-TTIRE------NILYGKDDATMEEITRAAKLSEAMSFISNLP 507
R I L Q P T + N G E I + +E +
Sbjct: 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL 137
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
ER+ V E SGG+K+R I + ++ P + +LDE S LD ++ V E ++ +
Sbjct: 138 ERY---VNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 568 -VGRTTVVVAHR---LSTIRNADVIAVVQGRKIVKTG 600
GR +++ H L I+ D + V+ +IVK+G
Sbjct: 192 EEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 31/193 (16%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL 1089
R V+F + + AG+++ L G +GSGK+T+L LI P AG + +DG DI ++
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 1090 KSLRKHI----ALVQQEPALFATSIYENI-----LYGKDGASEGEVIEAAKLAN-AHSFI 1139
++ A+ +PAL ++ EN+ G + +EA LA AH
Sbjct: 72 AEACHYLGHRNAM---KPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH--- 122
Query: 1140 SALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL 1199
LP GY LS GQK+RVA+AR ++ N I +LDE T+ALD + + + +
Sbjct: 123 --LPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
Query: 1200 QRLMRKRTTIIVA 1212
+ + + +I A
Sbjct: 171 RAHLAQGGIVIAA 183
|
Length = 207 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 6e-17
Identities = 67/214 (31%), Positives = 113/214 (52%), Gaps = 30/214 (14%)
Query: 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG--LVNQE 466
AG++ AL+GG+G+GKST++ +I P SG + + GN L Q+G LV QE
Sbjct: 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKAHQLGIYLVPQE 94
Query: 467 PALFAT-TIRENILYG--KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
P LF +++ENIL+G K A+M+++ L+ + ++ G L
Sbjct: 95 PLLFPNLSVKENILFGLPKRQASMQKMK--QLLAALGCQLD-----LDSSAG----SLEV 143
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALD-AESEN---SVQEALDRVMVGRTTVVVAHRL 579
+Q + I R ++++ IL+LDE T++L AE+E ++E L + G V ++H+L
Sbjct: 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ---GVGIVFISHKL 200
Query: 580 STIRN-ADVIAVVQGRKIVKTG-----SHEELIS 607
IR AD I+V++ I +G S +++I
Sbjct: 201 PEIRQLADRISVMRDGTIALSGKTADLSTDDIIQ 234
|
Length = 510 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 7e-17
Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 22/241 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +++S R + D L + G++VA++G +G+GKST++ + P SGE+
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGKDDATMEEITRAAKLSEAM 500
L+G + L ++ ++ Q +L F T+ E + G+ + A ++ A+
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 501 SF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIV------KNPSILLLDEATSALD 552
+ +++L R QLSGG++QR+ ++R + P LLLDE TSALD
Sbjct: 120 AQVDLAHLAGRDYP-------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172
Query: 553 -AESENSVQEALDRVMVGRTTV-VVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNP 609
A + ++ A V VV H L+ R AD I ++ ++V G+ E+++
Sbjct: 173 LAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE 232
Query: 610 N 610
Sbjct: 233 T 233
|
Length = 258 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 7e-17
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 15/226 (6%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
DV I LDI G+ V VG SG GKST++ +I + SG++ + + D+
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMN--DVPP 72
Query: 456 LRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFI--SNLPERFET 512
+ +G+V Q AL+ ++ EN+ +G A ++ ++++ + ++L +R
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR--- 129
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGR 570
+ LSGGQ+QR+AI R +V PS+ LLDE S LDA ++ + R+ +GR
Sbjct: 130 ----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 571 TTVVVAH-RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
T + V H ++ + AD I V+ ++ + G EL P + + A
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVA 231
|
Length = 369 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 7e-17
Identities = 66/249 (26%), Positives = 125/249 (50%), Gaps = 34/249 (13%)
Query: 382 IEFKDVSFCYPS--RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
I+ ++VS Y S R V D L++ G+I +VG SG+GK+T+ +I EP SG
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 440 EI-LLDGNNI-----KGLDLKW-LRQQIGLVNQEPALFA-TTIRENIL------YGKDDA 485
E+ + G+ G D + ++ IG+++QE L+ T+ +N+ + A
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA 399
Query: 486 TMEEI--TRAAKLSE--AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541
M+ + + E A + P+ +LS G++ R+A+++ ++K P I
Sbjct: 400 RMKAVITLKMVGFDEEKAEEILDKYPD-----------ELSEGERHRVALAQVLIKEPRI 448
Query: 542 LLLDEATSALDAESENSVQEAL--DRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598
++LDE T +D ++ V ++ R + +T ++V+H + + + D A+++ KIVK
Sbjct: 449 VILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508
Query: 599 TGSHEELIS 607
G EE++
Sbjct: 509 IGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 9e-17
Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 27/198 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L IPAG+ VA+VG SG GKST++ L+ P +GE LL G L R+ L+
Sbjct: 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAGTA----PLAEAREDTRLMF 87
Query: 465 QEPALFA-TTIRENI---LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
Q+ L + +N+ L G+ + A L++ + E
Sbjct: 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD--------------RANEWPAA 133
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHR 578
LSGGQKQR+A++RA++ P +LLLDE ALDA + +Q+ ++ + G T ++V H
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 579 LS-TIRNAD-VIAVVQGR 594
+S + AD V+ + +G+
Sbjct: 194 VSEAVAMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 9e-17
Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 27/232 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ VS Y D + + I G+ L+G +G+GKST+ ++ P G+I
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENIL-----YGKDDATMEEITRAAK 495
+ G + + R IG+V Q L T+REN+L +G +E +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV----- 115
Query: 496 LSEAMSFISNLPE--RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
I +L E R E++ R LSGG K+R+ ++RA++ +P +L+LDE T+ LD
Sbjct: 116 -------IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 168
Query: 554 ESENSVQEALDRVMV-GRTTVVVAHRLSTI-RNADVIAVVQ-GRKIVKTGSH 602
+ + + E L ++ G+T ++ H + R D + V++ GRKI + H
Sbjct: 169 HARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 9e-17
Identities = 67/265 (25%), Positives = 109/265 (41%), Gaps = 53/265 (20%)
Query: 353 YPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKI 412
+ I+ + K++ KD+SF +I G+
Sbjct: 13 FRIYHEKSYSLKKRLKGLAKGGR-KVAEFWALKDISF----------------EIYKGER 55
Query: 413 VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT 472
V ++G +G+GKST++ LI Y+P SG++ + G ++L G +
Sbjct: 56 VGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDPE------L 104
Query: 473 TIRENI-LYG--------KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
T RENI L G + D ++EI A+L + + + P + S
Sbjct: 105 TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI----DQPVK----------TYSS 150
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAE-SENSVQEALDRVMVGRTTVVVAHRLSTI 582
G R+A S A P ILLLDE + DA E ++ + V +T V+V+H L I
Sbjct: 151 GMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAI 210
Query: 583 RNA-DVIAVVQGRKIVKTGSHEELI 606
+ D ++ +I GS EE+I
Sbjct: 211 KQYCDRAIWLEHGQIRMEGSPEEVI 235
|
Length = 249 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-16
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 26/207 (12%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457
+ L +P + L+G +G+GKST++ +I P SGEI+ DG+ DL
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH--- 70
Query: 458 QQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511
+IG + + P L+ T REN+ L G D+ ++E+ I +L +
Sbjct: 71 -KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLN----------IVDLTNTGK 119
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
+ Q S G KQR+ I+ A++ +P +L+LDE T+ LD ++E +
Sbjct: 120 KKAK----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI 175
Query: 572 TVVV-AHRLSTIRN-ADVIAVVQGRKI 596
TV++ +H LS ++ AD I ++ +
Sbjct: 176 TVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-16
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 29/236 (12%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078
G+ ++P V D + RAG+ AL+G++G+GKST+L ++ Y P AG ++
Sbjct: 6 SFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
Query: 1079 VDGIDIKRLNLK-SLRKHIALVQQE----PALFATSIYENILYGKDGASEGEVIEAAKLA 1133
+DG +++ + +L +A++ QE P + ++ EN+ G+ G V
Sbjct: 63 IDGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNY 119
Query: 1134 NAHSFISALPEGY--STKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
A + L T + LS GQ+Q V IA+A+ +N ++ DE TS+L S
Sbjct: 120 EAREQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSL---S 172
Query: 1192 ERVVQQALQRLMRK-----RTTIIVAHRLSTI-KNADQISVIESGKIIEQGTHSSL 1241
R ++Q L R++R+ R + V+HR+ I D I+V + G+ + T +
Sbjct: 173 AREIEQ-LFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDM 225
|
Length = 501 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 58/210 (27%), Positives = 107/210 (50%), Gaps = 20/210 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ G+I L+G +G+GK+T I ++ +P SG + G+++ + + +R++IG+V
Sbjct: 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVF 79
Query: 465 QEPAL-FATTIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
Q+ ++ T EN+ LYG A E R +L + + L E + V
Sbjct: 80 QDLSVDDELTGWENLYIHARLYGVPGAERRE--RIDELLDFV----GLLEAADRLVK--- 130
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVA 576
SGG ++R+ I+R++V P +L LDE T LD ++ V E ++++ G T ++
Sbjct: 131 -TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT 189
Query: 577 HRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
H + D +A++ +I+ G+ EEL
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-16
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDGNNIKGL 451
P + I G+IV L+G SG GKST++S + +GE+ L+ + L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 452 DLKWLRQQIGLVNQEPALFAT-TIRENILYG-----KDDATMEEITRAAKLSEAMSFISN 505
++QIG++ Q+ LF ++ +N+L+ K +A A + S
Sbjct: 73 PAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ 130
Query: 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
P LSGGQ+ R+A+ RA++ P LLLDE S LD
Sbjct: 131 DPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-16
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 12/206 (5%)
Query: 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQ 1100
L G+ + L+G +G+GK+T+L IL P G V V G + +HI V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 1101 QEPAL---FATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGV-Q 1156
Q F S+ ++ G+ G + +A+ + AL T++ +R V +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIG--WLRRPCVADFAAVRDALRRVGLTELADRPVGE 113
Query: 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTII-VAHRL 1215
LSGGQ+QRV +ARA+ P +LLLDE + LD+ ++ ++ + L T I+ H L
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 1216 STIKNADQISVIESGKIIEQGTHSSL 1241
+ V+ +G++I GT L
Sbjct: 174 AQAMATCDRVVLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-16
Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 24/225 (10%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
T+ELR V F+Y V NL ++ G+ + L+G +GSGKST+ L+ Y P +G+
Sbjct: 322 TLELRNVTFAYQDNGFSV--GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAH 1136
+++DG + + RK + V + LF L G +G + A A
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ------LLGPEG-------KPANPALVE 426
Query: 1137 SFISALPEGYSTKVGERG-----VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
++ L + K+ ++LS GQK+R+A+ A+ + +ILLLDE + D
Sbjct: 427 KWLERL--KMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHF 484
Query: 1192 ERVVQQALQRLMRK--RTTIIVAHRLSTIKNADQISVIESGKIIE 1234
R Q L L+++ +T ++H +AD++ + +G++ E
Sbjct: 485 RREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 3e-16
Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 43/239 (17%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKS-TVLSLILRFYDPTAGKVMVDGIDIKRLN 1088
+ ++ ++ + ++ G+++A+VG+SGSGKS T L+L +R + G V D + ++R +
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALAL-MRLLEQAGGLVQCDKMLLRRRS 84
Query: 1089 -------------LKSLR-KHIALVQQEP-----ALFAT--SIYENILYGKDGASEGEVI 1127
++ +R +A++ QEP +F I E+I + + E ++
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144
Query: 1128 EAAKLAN------AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
EA ++ + A + +S P QLSGG +QRV IA A+ P +L+ D
Sbjct: 145 EAKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 1182 EATSALDVESERVVQQALQRLMRKRT--TIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
E T+ALDV + + Q ++ L ++ + I + H + + AD++ V+ G+ +E G+
Sbjct: 194 EPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 47/201 (23%), Positives = 99/201 (49%), Gaps = 11/201 (5%)
Query: 381 HIEFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--- 436
+ + DV + I + L + +G+++A++G SGSGK+T++ I E
Sbjct: 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62
Query: 437 LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAK 495
SG+IL +G + ++ + V Q+ L T+RE + Y + + A +
Sbjct: 63 TSGQILFNG---QPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR 119
Query: 496 LSEAMSFISNLPERFETQVGERGIQ-LSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+ L + T++G ++ +SGG+++R++I+ ++ +P +L+LDE TS LD+
Sbjct: 120 --KKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177
Query: 555 SENSVQEALDRVMVGRTTVVV 575
+ ++ L ++ V++
Sbjct: 178 TALNLVSTLSQLARRNRIVIL 198
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 4e-16
Identities = 93/441 (21%), Positives = 177/441 (40%), Gaps = 61/441 (13%)
Query: 127 YTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHY 186
G+ K+R +++ +L+ + + + +++ +TSD+ + A S
Sbjct: 74 TLGQHFIYKLRSEFIKKILDTPLERIE-RLGSARLLAGLTSDVRNISFAFS--------R 124
Query: 187 ISRFLGGFIIGF---ARVWQIS----LVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVK 239
+ + I+ A + +S L+T+ + + G + L+ARV K
Sbjct: 125 LPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFV-------LMARVYKHMAA 177
Query: 240 AGEIAEEVIGNVRTVQAFAGE-----DKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHC 294
A E +++ + +T+ E ++A V+ + R + +
Sbjct: 178 ARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH-----IIRANTFH 232
Query: 295 VLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGL------SLGQAAPDITAFIRA 348
+L ++WS ++ + + ++ +T + I + L A + + A
Sbjct: 233 LLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTA 292
Query: 349 KAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAI-FDKFCLDI 407
+ A I ++ KA + +E ++V F Y D A L I
Sbjct: 293 QVAFNKIAKLELAP--YKADFPRPQAFPDWKT-LELRNVRFAYQ---DNAFHVGPINLTI 346
Query: 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
G++V L+GG+GSGKST+ L+ Y+P SGEILLDG + L+ R+ V +
Sbjct: 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDY 406
Query: 468 ALFATTI--RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525
LF + + ++ + A K S SNL +LS GQ
Sbjct: 407 HLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNL-------------KLSTGQ 453
Query: 526 KQRIAISRAIVKNPSILLLDE 546
K+R+A+ A+++ IL+LDE
Sbjct: 454 KKRLALLLALLEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 4e-16
Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 33/203 (16%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF--------YDPTAGKVMVDG 1081
E + ++ NL+++ G +A+VGQSG+GK+T+L +IL Y P +GKV V
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452
Query: 1082 IDIKRLNLKSLRKHIALVQQEPALFATSIYENI--LYGKDGASEGEVIEAAKLANAHSFI 1139
+ L EP +I E++ G A+ E++ A L++A +
Sbjct: 453 NTVSALIPGEY---------EPEFGEVTILEHLRSKTGDLNAAV-EILNRAGLSDAVLYR 502
Query: 1140 SALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL 1199
E LS GQK+R +A+ + + P +LL+DE + LD + V + +
Sbjct: 503 RKFSE------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKI 550
Query: 1200 QRLMRKRT-TIIVAHRLSTIKNA 1221
L R+ T+IV + NA
Sbjct: 551 SELAREAGITLIVVTHRPEVGNA 573
|
Length = 593 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 4e-16
Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 41/233 (17%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI---G 461
L++ +IV+L+G +G+GK+TV + + FY+P G ILL G +I+GL QI G
Sbjct: 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP----GHQIARMG 81
Query: 462 LVN--QEPALFAT-TIRENILYGKD------------------DATMEEITRAAKLSEAM 500
+V Q LF T+ EN+L + A E + RAA E +
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
L E Q G L+ GQ++R+ I+R +V P IL+LDE + L+ + +
Sbjct: 142 ----GLLEHANRQAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD 193
Query: 561 EALD--RVMVGRTTVVVAHRLSTIRN-ADVIAVV-QGRKIVKTGSHEELISNP 609
E + R T +++ H + + +D I VV QG + G+ EE+ +NP
Sbjct: 194 ELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA-NGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-16
Identities = 65/248 (26%), Positives = 124/248 (50%), Gaps = 43/248 (17%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVL----SLILRFYDPTAGKV---------- 1077
E+ + ++++ G+ +A++GQ+GSGK+T + +L+L P G +
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL----PDTGTIEWIFKDEKNK 74
Query: 1078 --------MVDGIDIKRL------NLKSLRKHIALVQQ--EPALFATSIYENILYGKDGA 1121
+++ + I++ +K +R+ + +V Q E LF +I ++I++G
Sbjct: 75 KKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP--V 132
Query: 1122 SEG-EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLL 1180
S G EA K A + + L E Y + +LSGGQK+RVA+A + P+ L+
Sbjct: 133 SMGVSKEEAKKRAAKYIELVGLDESYLQR---SPFELSGGQKRRVALAGILAMEPDFLVF 189
Query: 1181 DEATSALDVESERVVQQALQRLMRK-RTTIIVAHRL-STIKNADQISVIESGKIIEQG-T 1237
DE T+ LD + + + + L ++ +T I+V H L + ++ + + GKII+ G T
Sbjct: 190 DEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDT 249
Query: 1238 HSSLVENE 1245
+ L +N+
Sbjct: 250 YDILSDNK 257
|
Length = 305 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 5e-16
Identities = 63/268 (23%), Positives = 119/268 (44%), Gaps = 79/268 (29%)
Query: 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI--LRFYDPTAGKVM------------ 1078
+ K+ + + G+ + ++G+SG+GKS ++ ++ + Y+PT+G+++
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72
Query: 1079 ---------------------VDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYG 1117
VD ++ + +RK IA++ Q FA LYG
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT--FA-------LYG 123
Query: 1118 KDGASEGEVIEAAKLANAHSFISALPE-GYS--------------TKVGER----GVQLS 1158
D V++ + + AL E GY ++ R LS
Sbjct: 124 DD-----TVLD--------NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLS 170
Query: 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTIIVAHRLS 1216
GG+KQRV +AR + K P + L DE T LD ++ ++V AL+ ++ + ++ +H
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230
Query: 1217 TIKN-ADQISVIESGKIIEQGTHSSLVE 1243
I++ +D+ +E+G+I E+GT +V
Sbjct: 231 VIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 5e-16
Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 43/240 (17%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN---LKSLR 1093
L++ G+++ +VG+SG GKST I+ T G+V G D+ + +++R
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 1094 KHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153
I ++ Q+P L + + I GE+I A L H P+ +V +R
Sbjct: 98 SDIQMIFQDP-LASLNPRMTI---------GEII-AEPLRTYH------PKLSRQEVKDR 140
Query: 1154 --------GV----------QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE-RV 1194
G+ + SGGQ QR+ IARA++ P++++ DE SALDV + +V
Sbjct: 141 VKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQV 200
Query: 1195 VQ--QALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAYFK 1251
V Q LQR M + I +AH L+ +K+ +D++ V+ G +E GT+ + N Y K
Sbjct: 201 VNLLQQLQREMG-LSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259
|
Length = 331 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 67/242 (27%), Positives = 111/242 (45%), Gaps = 31/242 (12%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKS----TVISLIERFYEPLSGEILLDGNNIKG 450
+ L + G+++ALVGGSGSGKS + ++ +G +LLDG +
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 451 LDLKWLRQQIGLVNQEP-ALF------ATTIRENIL-YGK--DDATMEEITRAAKLSEAM 500
L+ ++I + Q P + F T RE L GK DDAT+ A L A
Sbjct: 74 CALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ P ++SGG QR+ I+ A++ ++ DE T+ LD ++ +
Sbjct: 132 RVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180
Query: 561 EALDRVMVGRT--TVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAYA-AL 616
+ L+ ++ R ++V H + + R AD +AV+ +IV+ G E L + P A +L
Sbjct: 181 DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSL 240
Query: 617 VQ 618
V
Sbjct: 241 VS 242
|
Length = 254 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 6e-16
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 24/195 (12%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK- 1090
E+ I L V+ G+++AL+G+SGSGKST+L+++ D ++G+V + G + +++ +
Sbjct: 22 ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81
Query: 1091 --SLR-KHIALVQQEPALFAT-SIYENI-----LYGK-DGASEGEVIEAAKLANAHSFIS 1140
LR KH+ V Q L T + EN+ L G+ S + +
Sbjct: 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD 141
Query: 1141 ALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQ 1200
LP QLSGG++QRVA+ARA P++L DE T LD ++ + L
Sbjct: 142 HLP-----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLF 190
Query: 1201 RLMRKRTT--IIVAH 1213
L R+ T I+V H
Sbjct: 191 SLNREHGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 6e-16
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 21/218 (9%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL--RFYDPTAGKVMVDGIDIKRLNLKS- 1091
I K NL V+ G+ A++G +GSGKST+ I Y+ T+G ++ G D+ L
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 1092 LRKHIALVQQEP--------ALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALP 1143
R + L Q P F S N G ++++ KL A + +
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSAL-NARRSARGEEPLDLLDFLKLLKAKLALLGMD 133
Query: 1144 EGYSTKVGERGVQ--LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
E + R V SGG+K+R I + L P++ +LDE S LD+++ ++V + + R
Sbjct: 134 EEFL----NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINR 189
Query: 1202 LM-RKRTTIIVAH--RLSTIKNADQISVIESGKIIEQG 1236
L R+ +I+ H RL D + V+ G+I++ G
Sbjct: 190 LREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 7e-16
Identities = 59/219 (26%), Positives = 114/219 (52%), Gaps = 16/219 (7%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS-LR 1093
+ +D +L V +G+ + L+G +G+GK+T +++ AG +++D DI L L + R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 1094 KHIALVQQEPALFAT-SIYENIL----YGKDGASEGEVIEAAKLANAHSFISALPEGYST 1148
+ I + QE ++F S+Y+N++ D ++E A +L I L +
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH-IEHLRDSM-- 134
Query: 1149 KVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRT 1207
G LSGG+++RV IARA+ NP+ +LLDE + +D S +++ ++ L
Sbjct: 135 -----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG 189
Query: 1208 TIIVAHRL-STIKNADQISVIESGKIIEQGTHSSLVENE 1245
+I H + T+ ++ ++ G +I GT + ++++E
Sbjct: 190 VLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 8e-16
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 26/222 (11%)
Query: 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD- 452
+ + L + +G+ VAL+G SG GKST+ L+ P G + G + L+
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 453 --LKWLRQQIGLVNQEPALFAT----TIRENI------LYGKDDATMEEITRAAKLSEAM 500
K R+ I +V Q+ ++ A T+RE I L D A E + RA+++ A+
Sbjct: 82 AQRKAFRRDIQMVFQD-SISAVNPRKTVREIIREPLRHLLSLDKA--ERLARASEMLRAV 138
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
++ ++ R QLSGGQ QR+ ++RA+ P +L+LDEA S LD + V
Sbjct: 139 DLDDSVLDK-------RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191
Query: 561 EALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKT 599
L ++ G + + H L + R + V+ +IV+T
Sbjct: 192 RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233
|
Length = 268 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 62/238 (26%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL--- 1092
+D + + G+ + +VG+SGSGK+T+L+ + P AG+V D + +L +L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 1093 -RKHIA-----LVQQEPA----------------LFATSI--YENILYGKDGASE--GEV 1126
R+ + V Q P L A Y +I + A + V
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI---RATAGDWLERV 138
Query: 1127 -IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATS 1185
I+AA+ I LP +S GG +QR+ IAR ++ +P ++ +DE T
Sbjct: 139 EIDAAR-------IDDLPTTFS-----------GGMQQRLQIARNLVTHPRLVFMDEPTG 180
Query: 1186 ALDVESERVVQQALQRLMRKRTT------IIVAHRLSTIKN-ADQISVIESGKIIEQG 1236
LDV VQ L L+R +IV H L+ + A ++ V++ G+++E G
Sbjct: 181 GLDVS----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 1e-15
Identities = 55/212 (25%), Positives = 105/212 (49%), Gaps = 20/212 (9%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEP----LSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
G+++A++G SG+GK+T+++ + F P SG +LL+G +D K +R V Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYVQQ 106
Query: 466 EPALFAT-TIRENILY------GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
+ T T+RE++++ + E+ R ++ +A+ R V R
Sbjct: 107 DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTR--IGVPGRV 164
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAH 577
LSGG+++R+A + ++ +P +L DE TS LD+ SV + L + G+T + H
Sbjct: 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
Query: 578 RLST--IRNADVIAVVQGRKIVKTGSHEELIS 607
+ S+ D I ++ ++ GS ++ +
Sbjct: 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (204), Expect = 1e-15
Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 15/217 (6%)
Query: 1025 FSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI 1084
F RP V N+ + A +G +G+GK+T LS++ PT+G V+V G DI
Sbjct: 938 FEPSGRPAV---DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 1085 KRLNLKSLRKHIALVQQEPALFA-TSIYENILYGKDGASEGEVIEAAKLANAHSFISALP 1143
+ NL ++R+ + + Q LF ++ E+IL+ +G E A+L + A+
Sbjct: 995 ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFY--AQLKGRSWEEAQLE-----MEAML 1046
Query: 1144 E--GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
E G K E LSGG ++++++A A + + ++++LDE TS +D S R + L +
Sbjct: 1047 EDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106
Query: 1202 LMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
RT I+ H + D+I++I G++ GT
Sbjct: 1107 YRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-15
Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 42/245 (17%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKS-TVLSL--ILRFYDPTAG 1075
+LR V FS P +V D N +RAG+++ +VG+SGSGKS T +L +L G
Sbjct: 17 DLR-VTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG 74
Query: 1076 KVMVDGIDIKRLNLKSLRK----HIALVQQEPALFATS------IYENIL--------YG 1117
+G +I L K L K I+++ Q+P TS + E ++
Sbjct: 75 SATFNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMS 131
Query: 1118 KDGASEGEV--IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNP 1175
K A E V ++A K+ A + P + SGG +QRV IA A+L P
Sbjct: 132 KAEAFEESVRMLDAVKMPEARKRMKMYPH-----------EFSGGMRQRVMIAMALLCRP 180
Query: 1176 EILLLDEATSALDVESERVVQQALQRLMRKRTT--IIVAHRLSTIKN-ADQISVIESGKI 1232
++L+ DE T+ALDV + + L L R+ T I++ H L + D++ V+ +G+
Sbjct: 181 KLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT 240
Query: 1233 IEQGT 1237
+E G
Sbjct: 241 MEYGN 245
|
Length = 330 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 1e-15
Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 22/232 (9%)
Query: 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445
D+ F Y P + LD + LVG +G GKST+ + P G +L G
Sbjct: 6 DLWFRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 446 NNIKGLD-----LKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATMEEITRAAKLSE 498
K LD L LRQQ+ V Q+P +F T I +I + + + E ++ E
Sbjct: 63 ---KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDE 119
Query: 499 AMSFISNLPERFETQVGERGIQ-LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
A++ + + F Q IQ LS GQK+R+AI+ A+V LLLDE T+ LD
Sbjct: 120 ALTLVD--AQHFRHQ----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173
Query: 558 SVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607
+ + R++ G ++ +H + I +D + V++ +I+ G+ E+ +
Sbjct: 174 QMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 26/182 (14%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E +D++ C R +F + AG+ + L G +GSGK+T++ LI P +G
Sbjct: 2 MLEGEDLA-CV--RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT 58
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQ-EPALFATTIRENI-----LYGKDDATMEEITRAA 494
I LDG +I D+ +G N +PAL T+ EN+ G ++ + A
Sbjct: 59 IKLDGGDIDDPDVAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAV 115
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
L+ +++LP + LS GQK+R+A++R +V N I +LDE T+ALDA
Sbjct: 116 GLAP----LAHLPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
Query: 555 SE 556
+
Sbjct: 162 AV 163
|
Length = 207 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 42/261 (16%)
Query: 382 IEFKDVSFCYPSRPDVAI--FDKFCLDIPAGKIVALVGGSGSGKSTVIS----------- 428
I+ K++ + + + D ++I G+ +A++G +GSGK+T I
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 429 LIERFYE-------PLSGEILLDGNNIKGL------DLKWLRQQIGLVNQ--EPALFATT 473
IE ++ E +L+ I+ +K +R+++G+V Q E LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 474 IRENILYGKDDATM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530
I ++I++G + E RAAK E + L E + + +LSGGQK+R+A
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIE----LVGLDESY---LQRSPFELSGGQKRRVA 175
Query: 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTI--RNADV 587
++ + P L+ DE T+ LD + + E D + G+T ++V H L +
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235
Query: 588 IAVVQGRKIVKTGSHEELISN 608
I G KI+K G +++S+
Sbjct: 236 IFFKDG-KIIKDGDTYDILSD 255
|
Length = 305 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 22/213 (10%)
Query: 1005 GDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLS 1064
G + N + I L + P + + N +VR G+ + + G+SG+GK+++L
Sbjct: 380 GRRIDFDDNADHGITLENLSLRTPDGQ--TLLSELNFEVRPGERLLITGESGAGKTSLLR 437
Query: 1065 LILRFYDPTAGKV-MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILY--GKDGA 1121
+ + +G++ M + + Q P L ++ E + Y
Sbjct: 438 ALAGLWPWGSGRISMPADSAL------------LFLPQRPYLPQGTLREALCYPNAAPDF 485
Query: 1122 SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
S+ E++ L E LSGG++QR+A AR +L P+ + LD
Sbjct: 486 SDAELVAVLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLD 540
Query: 1182 EATSALDVESERVVQQALQRLMRKRTTIIVAHR 1214
EATSALD E+E + Q L+ + T I V HR
Sbjct: 541 EATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIF-DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I +++S PD + ++ G+ + + G SG+GK++++ + + SG
Sbjct: 393 ITLENLSLR---TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY-----GKDDATMEEITRAAK 495
I + ++ + + Q P L T+RE + Y DA + +
Sbjct: 450 ISMPADS-----------ALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVG 498
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
L + L ER + + LSGG++QR+A +R ++ P + LDEATSALD E+
Sbjct: 499 LGD-------LAERLD-EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
Query: 556 ENSVQEALDRVMVGRTTVVVAHR 578
E+ + + L + T + V HR
Sbjct: 551 EDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-15
Identities = 54/228 (23%), Positives = 112/228 (49%), Gaps = 23/228 (10%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+E+ GV S+ + V + + +V G+ L+G +G+GK+T +IL +PT G+
Sbjct: 2 ALEIEGVTKSFGDKKAV---DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE 58
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILY--GKDGASEGEVIEAAKLA 1133
+ +G + + ++ I + +E L+ ++ + + Y G + E+ +
Sbjct: 59 ITWNGGPLSQ----EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK---- 110
Query: 1134 NAHSFISALPE--GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
+ A E K ++ +LS G +Q++ AV+ PE+L+LDE S LD +
Sbjct: 111 -----LQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVN 165
Query: 1192 ERVVQQALQRLMRKRTTIIVA-HRLSTIKN-ADQISVIESGKIIEQGT 1237
+++ A+ L + TII + HR+ ++ D++ +++ G+ + GT
Sbjct: 166 VELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 6e-15
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 48/238 (20%)
Query: 1029 SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN 1088
R E +F D + + AG+++ + G +G+GK+T+L ++ P AG+V G I+ +
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 1089 LKSLRKHIALVQQEPAL-FATSIYENILY------GKDGASEGEVIEAAKLANAHSFISA 1141
+S + + + +P + + EN+ + + A+ E + LA +
Sbjct: 71 -ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG----LED 125
Query: 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
LP G QLS GQ++RVA+AR L + +LDE +ALD E ++
Sbjct: 126 LPVG----------QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL------ 169
Query: 1202 LMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQ 1259
T ++ AH G I+ TH L A + ++L +
Sbjct: 170 -----TALMAAH-------------AAQGGIVLLTTHQPL--PIASAQIRRLDLTATK 207
|
Length = 209 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 41/214 (19%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDL 453
I L I G++ AL+G +GSGKST+ I YE GEIL G +I L
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 454 -KWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
+ R I L Q P EI K ++ F+ + E F
Sbjct: 72 EERARLGIFLAFQYPP--------------------EIP-GVKNAD---FLRYVNEGF-- 105
Query: 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRT 571
SGG+K+R I + ++ P + +LDE S LD ++ V E ++++ G++
Sbjct: 106 ---------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 572 TVVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
+++ H RL D + V+ +IVK+G E
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-14
Identities = 73/246 (29%), Positives = 115/246 (46%), Gaps = 52/246 (21%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKS-TVISLIERFYEP----LSGEILLDGNNIKGLDLKW 455
+ L I AG+ +ALVG SGSGKS T +S++ P SG+I G ++ +
Sbjct: 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQT 85
Query: 456 LRQ----QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSF---ISNLPE 508
LR +I ++ QEP + N L+ T+E+ +L E +S +
Sbjct: 86 LRGVRGNKIAMIFQEP-----MVSLNPLH-----TLEK-----QLYEVLSLHRGMRREAA 130
Query: 509 RFET-----QVGERGI---------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
R E +VG R QLSGG++QR+ I+ A++ P +L+ DE T+ALD
Sbjct: 131 RGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDV- 189
Query: 555 SENSVQEALDRVM------VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607
SVQ + +++ + + + H LS +R AD +AV+Q + V+ L S
Sbjct: 190 ---SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246
Query: 608 NPNSAY 613
P Y
Sbjct: 247 APTHPY 252
|
Length = 529 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 64/248 (25%), Positives = 110/248 (44%), Gaps = 41/248 (16%)
Query: 1018 IELRGVHFSY------------------PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGK 1059
IE+ + SY EV K + + G+ + +G +G+GK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 1060 STVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALV--QQE------PALFATSIY 1111
+T L ++ PT+G+V V G+ + K + I +V Q+ P + + +
Sbjct: 61 TTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLL 119
Query: 1112 ENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV 1171
I Y A + ++ +L+ L R QLS GQ+ R IA A+
Sbjct: 120 AAI-YDLPPARFKKRLD--ELSEL------LDLEELLDTPVR--QLSLGQRMRAEIAAAL 168
Query: 1172 LKNPEILLLDEATSALDVESERVVQQALQRLMRKR-TTIIV-AHRLSTI-KNADQISVIE 1228
L PEIL LDE T LDV ++ ++ L+ R+R TT+++ +H + I A ++ VI+
Sbjct: 169 LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228
Query: 1229 SGKIIEQG 1236
G+++ G
Sbjct: 229 KGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-14
Identities = 63/246 (25%), Positives = 121/246 (49%), Gaps = 22/246 (8%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
I + G+ S+ V K NL V G+ AL+G++G+GKST++ ++ ++P
Sbjct: 1 MATPYISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP 57
Query: 1073 TAGKVMVDGIDIKRLNLK-SLRKHIALVQQEPALF-ATSIYENILYGKD------GASEG 1124
T G + ++ I+ +L+ K + + I ++ QE ++ ++ EN+ G+ G +
Sbjct: 58 TKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNII 117
Query: 1125 EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEAT 1184
+ E A L KV LS KQ + IA+ ++ + +++++DE T
Sbjct: 118 DWREMRVRAAMMLLRVGLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPT 173
Query: 1185 SAL-DVESERVVQQALQRLMRKRTTIIV--AHRLSTIKN-ADQISVIESGKIIEQGTHSS 1240
S+L + E + + + +RK T IV +H+L+ I+ D+ +V++ G + G S
Sbjct: 174 SSLTNKEVDYLF--LIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231
Query: 1241 LVENED 1246
V N+D
Sbjct: 232 -VSNDD 236
|
Length = 510 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 28/238 (11%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL--- 1092
+D + + G+ + +VG+SGSGKST+L + P G L L L
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 1093 ------RKHIALVQQEPALFATSIYENILYG-KDGASEGEVIEAAKL-------ANAHSF 1138
R V Q P + + GA+ GE + A A A +
Sbjct: 79 ERRRLMRTEWGFVHQNPR-------DGLRMRVSAGANIGERLMAIGARHYGNIRATAQDW 131
Query: 1139 ISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQA 1198
+ + E T++ + SGG +QR+ IAR ++ P ++ +DE T LDV + +
Sbjct: 132 LEEV-EIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 190
Query: 1199 LQRLMRKR--TTIIVAHRLSTIK-NADQISVIESGKIIEQGTHSSLVENEDGAYFKLI 1253
L+ L+R IIV H L + A ++ V++ G+++E G ++++ Y +L+
Sbjct: 191 LRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 52/198 (26%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S P V + D +I G + + G SG+GKS++ + + SG I
Sbjct: 1 IELENLSLATPDG-RVLLKDLS-FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
+ + + Q P L T+RE ++Y DD
Sbjct: 59 GMPEGE-----------DLLFLPQRPYLPLGTLREQLIYPWDDV---------------- 91
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
LSGG++QR+A +R ++ P + LDEATSALD ESE+ + +
Sbjct: 92 -------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 562 ALDRVMVGRTTVV-VAHR 578
L + TV+ V HR
Sbjct: 133 LLKELG---ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 1e-14
Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 20/228 (8%)
Query: 1016 GTIELRGVHFSYPS--RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073
+IEL+ VH + + E +L++ G + +VG++G GKST+ L Y P
Sbjct: 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395
Query: 1074 AGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLA 1133
G++++DG + + R + + + LF + L G D E A L
Sbjct: 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLF------DDLIGPDEG------EHASLD 443
Query: 1134 NAHSFISALPEGYSTKVGERG----VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
NA ++ L K+ + G LS GQ++R+A+ A L++ ILL DE + D
Sbjct: 444 NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDP 503
Query: 1190 ESERVVQQALQRLMRKR--TTIIVAHRLSTIKNADQISVIESGKIIEQ 1235
+R + L ++++ T II++H + ADQI + +G I++
Sbjct: 504 AFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 31/227 (13%)
Query: 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQIG 461
++ AG+I+ LVG +G+GKST+++ + SG I G ++ L R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 462 LVNQEPALFATTIRENI-LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
L Q+ FA + + L+ D E + + ++ + ++G Q
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELL----------NDVAGA-LALDDKLGRSTNQ 125
Query: 521 LSGGQKQRIAISRAIVK-----NPS--ILLLDEATSALDAESENSVQEALDRVMV----- 568
LSGG+ QR+ ++ +++ NP+ +LLLDE ++LD ++ ALDR++
Sbjct: 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS----ALDRLLSALCQQ 181
Query: 569 GRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
G V+ +H L+ T+R+A +++ K++ +G EE+++ P A A
Sbjct: 182 GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQA 228
|
Length = 248 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-14
Identities = 55/219 (25%), Positives = 114/219 (52%), Gaps = 22/219 (10%)
Query: 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV----DGIDIKR---LNLKSLR 1093
L+V+ G+ +VG SG+GK+T+ +I +PT+G+V V + +D+ + +
Sbjct: 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAK 364
Query: 1094 KHIALVQQEPALFA-TSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGE 1152
++I ++ QE L+ ++ +N+ + E A++ + G+ + E
Sbjct: 365 RYIGILHQEYDLYPHRTVLDNL---TEAIGLELPDELARMKAVITLKMV---GFDEEKAE 418
Query: 1153 RGV-----QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL--QRLMRK 1205
+ +LS G++ RVA+A+ ++K P I++LDE T +D ++ V ++ R +
Sbjct: 419 EILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478
Query: 1206 RTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243
+T IIV+H + + + D+ +++ GKI++ G +VE
Sbjct: 479 QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTII-VAHRL 1215
LSGG++QR+A AR +L P+ + LDEATSALD ESE + Q L+ L T+I V HR
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG---ITVISVGHRP 148
Query: 1216 STIKNADQI 1224
S K D++
Sbjct: 149 SLWKFHDRV 157
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-14
Identities = 58/213 (27%), Positives = 114/213 (53%), Gaps = 16/213 (7%)
Query: 1040 NLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL-KSLRKHIAL 1098
+L + G+ + L+G +G+GK+T+L + T+G+++ DG DI K +R+ +A+
Sbjct: 25 SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84
Query: 1099 VQQEPALFA-TSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQL 1157
V + +F+ ++ EN+ G A + E ++ + L E + G +
Sbjct: 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWVYELFPRLHERRIQRAG----TM 138
Query: 1158 SGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ---ALQRLMRKRTTIIVAHR 1214
SGG++Q +AI RA++ P +LLLDE + L + ++QQ +++L + TI + +
Sbjct: 139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQGMTIFLVEQ 195
Query: 1215 LS--TIKNADQISVIESGKIIEQGTHSSLVENE 1245
+ +K AD+ V+E+G ++ + T +L+ NE
Sbjct: 196 NANQALKLADRGYVLENGHVVLEDTGDALLANE 228
|
Length = 237 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 49/248 (19%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ + G+ Y +D + + G+ + +VG+SGSGK+T+L I P AG V
Sbjct: 7 LSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63
Query: 1078 ---MVDGIDIKRLNLKS------LRKHIALVQQEPA---LFATSIYENI----------L 1115
M DG + LR V Q P S NI
Sbjct: 64 TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH 123
Query: 1116 YGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNP 1175
YG A + +E ++ ++ + SGG +QR+ IAR ++ P
Sbjct: 124 YGNIRAEAQDWLEEVEID-------------LDRIDDLPRTFSGGMQQRLQIARNLVTRP 170
Query: 1176 EILLLDEATSALDVESERVVQQALQRLMRKRTT------IIVAHRLSTIK-NADQISVIE 1228
++ +DE T LDV VQ L L+R +IV H L+ + AD++ V++
Sbjct: 171 RLVFMDEPTGGLDVS----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMK 226
Query: 1229 SGKIIEQG 1236
G+++E G
Sbjct: 227 QGQVVESG 234
|
Length = 258 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 2e-14
Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 27/218 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
++IP G A++G +G GKST++ + R P G + LDG +I+ K + ++IGL+
Sbjct: 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87
Query: 465 QEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE--------TQVGE 516
Q ATT D T++E+ + F E E T +
Sbjct: 88 QN----ATT--------PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH 135
Query: 517 RGIQ----LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGR 570
Q LSGGQ+QR I+ + + +I+LLDE T+ LD + + E L + G
Sbjct: 136 LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGY 195
Query: 571 TTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
T V H L+ R A + ++ KIV G+ +E+++
Sbjct: 196 TLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
|
Length = 265 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-14
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 44/230 (19%)
Query: 409 AGKIVALVGGSGSGKST----VISLIERFYEPLSGEILLDGNNIKGLDLKWL---RQQIG 461
G+ + LVG SGSGKST ++ LI GEI DG + L+ + L R +I
Sbjct: 311 PGETLGLVGESGSGKSTTGLALLRLI-----NSQGEIWFDGQPLHNLNRRQLLPVRHRIQ 365
Query: 462 LVNQEP--AL-----FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPE---RFE 511
+V Q+P +L I E + + + + R ++ M + PE R+
Sbjct: 366 VVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ--REQQVIAVMEEVGLDPETRHRYP 423
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE---ALDRVMV 568
+ SGGQ+QRIAI+RA++ PS+++LDE TS+LD +VQ AL + +
Sbjct: 424 AE-------FSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQILALLKSLQ 472
Query: 569 GR---TTVVVAHRLSTIRNA--DVIAVVQGRKIVKTGSHEELISNPNSAY 613
+ + ++H L +R VI + QG ++V+ G E + + P Y
Sbjct: 473 QKHQLAYLFISHDLHVVRALCHQVIVLRQG-EVVEQGDCERVFAAPQQEY 521
|
Length = 529 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 27/226 (11%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG-IDIKRLNLKSL-RKH 1095
D + V G+ L+G +G+GK+T++ +I P G+V+ DG D+ +L + R
Sbjct: 23 DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82
Query: 1096 IALVQQEPALF-ATSIYEN-------------ILYGKDGASEGEVIEAAKLANAHSFISA 1141
I Q+P +F ++ EN L+ + A E I+ LA I
Sbjct: 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDEL-LA----TI-- 135
Query: 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
G + LS GQKQ + I + ++P++LLLDE + + + L+
Sbjct: 136 ---GLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
Query: 1202 LMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246
L K + ++V H + ++ AD+++V+ G ++ +G+ + +
Sbjct: 193 LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPK 238
|
Length = 249 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 77/281 (27%), Positives = 122/281 (43%), Gaps = 77/281 (27%)
Query: 373 RKLDKLSGH-IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431
R L KL G +DVSF D+ G+++ +VG SGSGK+T+++ +
Sbjct: 10 RGLTKLYGPRKGCRDVSF----------------DLYPGEVLGIVGESGSGKTTLLNALS 53
Query: 432 RFYEPLSGEILLDGNNIKGLDL---------KWLRQQIGLVNQEPA-------------- 468
P +GE+ + + DL + LR + G V+Q P
Sbjct: 54 ARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIG 113
Query: 469 --LFATTIRENILYGKDDAT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522
L A R YG AT +E + A + I +LP F S
Sbjct: 114 ERLMAVGARH---YGDIRATAGDWLERVEIDA------ARIDDLPTTF-----------S 153
Query: 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ-EALD--RVMV---GRTTVVVA 576
GG +QR+ I+R +V +P ++ +DE T LD SVQ LD R +V G V+V
Sbjct: 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDV----SVQARLLDLLRGLVRELGLAVVIVT 209
Query: 577 HRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616
H L+ R A + V++ ++V++G ++++ +P Y L
Sbjct: 210 HDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPYTQL 250
|
Length = 258 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 4e-14
Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 26/211 (12%)
Query: 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453
RP V D+ + +I A +G +G+GK+T +S++ P SG +L+ G +I+ +L
Sbjct: 943 RPAV---DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE-TNL 998
Query: 454 KWLRQQIGLVNQEPALFA-TTIRENILY-----GK--DDATMEEITRAAKLSEAMSFISN 505
+RQ +G+ Q LF T+ E+IL+ G+ ++A +E EAM +
Sbjct: 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLE--------MEAMLEDTG 1050
Query: 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDR 565
L + E LSGG +++++++ A V + +++LDE TS +D S S+ + L +
Sbjct: 1051 LHHK----RNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106
Query: 566 VMVGRTTVVVAHRLSTIRN-ADVIAVV-QGR 594
GRT ++ H + D IA++ QGR
Sbjct: 1107 YRSGRTIIMSTHHMDEADLLGDRIAIISQGR 1137
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 4e-14
Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 18/206 (8%)
Query: 1040 NLKVRAGKSMALVGQSGSGKSTVLSLILRFY--DPTAGKVMVDGIDIKRLNLKSL-RKHI 1096
+L+VR G+ + L G++G+GKST++ ++ Y G++ G +K N++ R I
Sbjct: 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80
Query: 1097 ALVQQEPALFAT-SIYENILYGKDGASEGEVIE-AAKLANAHSF-----ISALPEGYSTK 1149
++ QE L S+ ENI G + G + A A + + A +
Sbjct: 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV--TRP 138
Query: 1150 VGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTI 1209
VG+ G GGQ+Q V IA+A+ K +L+LDE +S+L + ++ ++ L
Sbjct: 139 VGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVAC 194
Query: 1210 I-VAHRLSTIKN-ADQISVIESGKII 1233
+ ++H+L+ +K D I VI G+ +
Sbjct: 195 VYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 5e-14
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 39/192 (20%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-------- 456
L + AG+ VAL G SG+GKST++ + Y P SG IL+ +DL
Sbjct: 29 LTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEG-AWVDLAQASPREVLEV 87
Query: 457 -RQQIGLVNQEPALFATTI-RENILYGKDDATMEE-----ITRAAKLSEAMSFIS--NLP 507
R+ IG V+Q F I R + L + E + R A + A ++ N+P
Sbjct: 88 RRKTIGYVSQ----FLRVIPRVSAL----EVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 508 ERF-----ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
ER T SGG++QR+ I+R + + ILLLDE T++LDA + V E
Sbjct: 140 ERLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 563 LDRVMVGRTTVV 574
+ ++
Sbjct: 192 IAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 62/241 (25%), Positives = 118/241 (48%), Gaps = 29/241 (12%)
Query: 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQIG 461
++ AG+I+ LVG +G+GKST+++ + P SG I G ++ L R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 462 LVNQEPALFATTIRENI-LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520
L Q+ FA + + + L+ D E + A L+E + L ++ V Q
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA--LNEVAEAL-GLDDKLGRSVN----Q 126
Query: 521 LSGGQKQRIAISRAIVK-----NPS--ILLLDEATSALDAESENSVQEALDRVMV----- 568
LSGG+ QR+ ++ +++ NP+ +LLLDE ++LD + ALDR++
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA----ALDRLLSELCQQ 182
Query: 569 GRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPN--SAYAALVQLQEAASQ 625
G V+ +H L+ T+R+AD + +++ K++ +G +E+++ N + + +
Sbjct: 183 GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVNFRRLDVEGH 242
Query: 626 Q 626
Sbjct: 243 P 243
|
Length = 248 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 5e-14
Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 34/238 (14%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--- 452
+V +K D+ G+ ++LVG SGSGKST + R E GEI+ +G I L
Sbjct: 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGK 395
Query: 453 LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEI---------TRAAKLSEAMSF 502
L+ LR+ I + Q+P +A+ R+ + + ME + AA+++ +
Sbjct: 396 LQALRRDIQFIFQDP--YASLDPRQTVGD----SIMEPLRVHGLLPGKAAAARVAWLLER 449
Query: 503 ISNLPE---RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+ LPE R+ + SGGQ+QRI I+RA+ NP +++ DEA SALD +
Sbjct: 450 VGLLPEHAWRYPHE-------FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQI 502
Query: 560 QEA---LDRVMVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
L R G + ++H ++ + R + +AV+ +IV+ G + NP Y
Sbjct: 503 INLLLDLQRDF-GIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPY 559
|
Length = 623 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-14
Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 31/230 (13%)
Query: 1040 NLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL-NLKSLRKHIAL 1098
NL+VR + ++L+G +G+GK+TV + + FY PT G +++ G I+ L + R +
Sbjct: 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84
Query: 1099 VQQEPALFAT-SIYENILYGKDGASEGEVI------------EAAKLANAHSFISALPEG 1145
Q LF ++ EN+L + + + E+ L A +++
Sbjct: 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE----- 139
Query: 1146 YSTKVGERGV------QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL 1199
+VG L+ GQ++R+ IAR ++ PEIL+LDE + L+ + + + + +
Sbjct: 140 ---RVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELI 196
Query: 1200 QRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246
L + T +++ H + + +D+I V+ G + GT + N D
Sbjct: 197 AELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPD 246
|
Length = 255 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 5e-14
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
SR + +F+ + AG+ + + G +G GK+T++ ++ P SGE+ +G +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 453 LKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNL 506
+ + I + P L + EN+ ++G T+E+ A L+ +L
Sbjct: 69 DEP-HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG----FEDL 123
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
P QLS GQ++R+A++R + + +LDE T+ALD
Sbjct: 124 PAA----------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 55/213 (25%), Positives = 113/213 (53%), Gaps = 21/213 (9%)
Query: 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA 468
G+ +A++G +GSGKST+ ++ EP SGE+L+D + + D + Q+I ++ Q+P+
Sbjct: 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPS 97
Query: 469 LFATTIRENILYGKD-----DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
+ R+ I D + +E R ++ E + + LP+ L+
Sbjct: 98 T-SLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPD----HASYYPHMLAP 152
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV------GRTTVVVAH 577
GQKQR+ ++RA++ P +++ DEA ++LD S++ L +M+ G + + V
Sbjct: 153 GQKQRLGLARALILRPKVIIADEALASLDM----SMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 578 RLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
L +++ +D + V+ ++V+ GS +++++P
Sbjct: 209 HLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 6e-14
Identities = 72/231 (31%), Positives = 108/231 (46%), Gaps = 34/231 (14%)
Query: 1022 GVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTV---LSLILRFYDPTAGKVM 1078
+ F Y P + K NL LVG +G GKST+ LS +LR P G V+
Sbjct: 6 DLWFRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVL 59
Query: 1079 VDG--IDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYG--KDGASEGEVI----E 1128
G +D + L +LR+ +A V Q+P +F T I +I + G E E+ E
Sbjct: 60 WQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDE 119
Query: 1129 AAKLANAHSFISALPEGYSTKVGERGVQ-LSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
A L +A F + +Q LS GQK+RVAIA A++ LLLDE T+ L
Sbjct: 120 ALTLVDAQHF------------RHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGL 167
Query: 1188 DVESERVVQQALQRLMRK-RTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236
D + ++R++ + II +H + I +D + V+ G+I+ G
Sbjct: 168 DPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 6e-14
Identities = 70/270 (25%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
+DVSF D+ G+++ +VG SGSGK+T++ I P +G
Sbjct: 18 PGKGCRDVSF----------------DLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 440 EILLDGNNIKGLDL---------KWLRQQIGLVNQEPA----------------LFATTI 474
+ + + DL + LR + G V+Q P L A
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121
Query: 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534
R YG A ++ ++ I +LP F SGG +QR+ I+R
Sbjct: 122 RH---YGNIRAEAQDWLEEVEIDL--DRIDDLPRTF-----------SGGMQQRLQIARN 165
Query: 535 IVKNPSILLLDEATSALDAESENSVQ-EALD--RVMV---GRTTVVVAHRLSTIR-NADV 587
+V P ++ +DE T LD SVQ LD R +V G V+V H L+ R AD
Sbjct: 166 LVTRPRLVFMDEPTGGLDV----SVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADR 221
Query: 588 IAVVQGRKIVKTGSHEELISNPNSAYAALV 617
+ V++ ++V++G + ++ +P+ Y L+
Sbjct: 222 LMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 6e-14
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 5/216 (2%)
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR 1093
+ ++ +++ G A++G +G GKST+L + R P G V +DG I+ K +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80
Query: 1094 KHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153
+ I L+ Q A I L + + + + + A+ T + ++
Sbjct: 81 RRIGLLAQN-ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ 139
Query: 1154 GVQ-LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTII 1210
V LSGGQ+QR IA + + I+LLDE T+ LD+ + + + L L R++ T
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAA 199
Query: 1211 VAHRLS-TIKNADQISVIESGKIIEQGTHSSLVENE 1245
V H L+ + A + + GKI+ QG +V E
Sbjct: 200 VLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 7e-14
Identities = 50/212 (23%), Positives = 105/212 (49%), Gaps = 22/212 (10%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN-LKSLRK 1094
+D + VRAG+ + + G G+G++ + + ++G++++DG ++ + +++
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 1095 HIALV---QQEPALFAT-SIYENILYG--KDGASEGEVIEAAKLANAHSFISAL---PEG 1145
IA V ++ L SI ENI + + G + + A A +I L
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 1146 YSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK 1205
+G LSGG +Q+V +AR + +P++L+LDE T +DV ++ + + ++ L +
Sbjct: 395 PEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE 450
Query: 1206 RTTIIVAHRLST-----IKNADQISVIESGKI 1232
I++ +S+ + +D+I V+ G+I
Sbjct: 451 GKAILM---ISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 7e-14
Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 35/249 (14%)
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
S ++ F + +P V D D AG++ AL+G +G+GKST++ ++ Y+P +
Sbjct: 2 SPYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA 58
Query: 439 GEILLDGNNIKGLDLK-WLRQQIGLVNQE----PALFATTIRENILYGKDDATMEEITRA 493
G IL+DG ++ L + ++ QE P + T+ EN+ G+ + R
Sbjct: 59 GSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRR 115
Query: 494 AKLSEAMSFISNLPERF--ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
EA + +L +T + LS GQ+Q + I++A+ +N ++ DE TS+L
Sbjct: 116 LLNYEAREQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSL 171
Query: 552 DA-ESENSVQEALDRVMV-----GRTTVVVAHRLSTI-RNADVIAVVQ-GRKI-----VK 598
A E E L RV+ GR + V+HR+ I D I V + GR + +
Sbjct: 172 SAREIEQ-----LFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA 226
Query: 599 TGSHEELIS 607
++L+
Sbjct: 227 QVDRDQLVQ 235
|
Length = 501 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 7e-14
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 26/193 (13%)
Query: 1029 SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN 1088
R +F + + AG+++ + G +GSGK+T+L ++ P AG+V+++G +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 1089 LKSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYS 1147
S+ + + + P + T S+ EN+ + S+ +V EA LA
Sbjct: 69 -DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEA--LA-------------- 111
Query: 1148 TKVGERGV------QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES-ERVVQQALQ 1200
+VG G QLS GQ++RVA+AR +L + +LDE T+ALD R +
Sbjct: 112 -RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAG 170
Query: 1201 RLMRKRTTIIVAH 1213
R ++ H
Sbjct: 171 HCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 8e-14
Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 65/244 (26%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF--YDPTAGKVMVDGIDIK---- 1085
E I K NL + G+ A++G +GSGKST+ +I Y G ++ G I
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 1086 ---------------------------RLNLKSLRKHIALVQQEPALFATSIYENILYGK 1118
RL S RK L + +P F I E +
Sbjct: 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKL---- 134
Query: 1119 DGASEGEVIEAAKLAN-AHSFISA-LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPE 1176
KL SF+S + EG+S GG+K+R I + L + E
Sbjct: 135 ------------KLVGMDPSFLSRNVNEGFS-----------GGEKKRNEILQMALLDSE 171
Query: 1177 ILLLDEATSALDVESERVVQQALQRLMRKRTTII-VAH--RLSTIKNADQISVIESGKII 1233
+ +LDE S LD+++ +++ + + +LM +II + H RL D + V+++GKII
Sbjct: 172 LAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII 231
Query: 1234 EQGT 1237
+ G
Sbjct: 232 KTGD 235
|
Length = 252 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 9e-14
Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 44/240 (18%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---------KWL 456
D+ G+++ +VG SGSGKST++ + P G + L+L + +
Sbjct: 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLM 84
Query: 457 RQQIGLVNQEPA----------------LFATTIRENILYGKDDATMEEITRAAKLSEAM 500
R + G V+Q P L A R YG AT ++ ++
Sbjct: 85 RTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---YGNIRATAQDWLEEVEIDPTR 141
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
I +LP F SGG +QR+ I+R +V P ++ +DE T LD + +
Sbjct: 142 --IDDLPRAF-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 188
Query: 561 EALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617
+ L ++ G ++V H L R A + V+Q ++V++G ++++ +P Y L+
Sbjct: 189 DLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 9e-14
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 26/194 (13%)
Query: 1029 SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN 1088
SR E ++F+ + + AG+++ + G +G GK+T+L ++ P +G+V +G +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 1089 LKSLRKHIALVQQEPALFAT-SIYENI-LYGKDGASEGEVIEAAKLANAHSFISALPEGY 1146
++I + P L S EN+ + IE A
Sbjct: 69 -DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDA---------------- 111
Query: 1147 STKVGERGV------QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL- 1199
VG G QLS GQ++R+A+AR L + +LDE T+ALD ++ L
Sbjct: 112 LAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR 171
Query: 1200 QRLMRKRTTIIVAH 1213
L R ++ H
Sbjct: 172 AHLARGGIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-13
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
R A+F + AG+ + + G +GSGK+T++ ++ PL+G +LL+G +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
R + L + ++ EN+ + D + E++ A
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEAL-----------------A 111
Query: 513 QVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
+VG G QLS GQ++R+A++R ++ + +LDE T+ALD EA+
Sbjct: 112 RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 27/174 (15%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ L V S+ R + D +L+++ GK + L+G +G+GKST++ ++L P G +
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATS--IYENILYGKDGASEGEVIEAAKLANA 1135
+G LR I V Q+ L T L + G + +++ A K A
Sbjct: 62 KRNG---------KLR--IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
I A + +LSGG+ QRV +ARA+L P++L+LDE T +DV
Sbjct: 111 GHLIDAPMQ-----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153
|
Length = 251 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 25/240 (10%)
Query: 369 SKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS 428
SK+ R K G I S +V I G+IV +G +G+GK+T +
Sbjct: 7 SKSYRVYSKEPGLIGSLK-SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLK 65
Query: 429 LIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLV----NQE----PALFATTIRENILY 480
++ +P SGE+ + G + K ++IG+V Q P + + + I Y
Sbjct: 66 ILSGLLQPTSGEVRVAGL-VPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAI-Y 123
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
A ++ R +LSE + +L E +T V R QLS GQ+ R I+ A++ P
Sbjct: 124 DLPPARFKK--RLDELSELL----DLEELLDTPV--R--QLSLGQRMRAEIAAALLHEPE 173
Query: 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVV--AHRLSTI-RNAD-VIAVVQGRKI 596
IL LDE T LD ++ +++ L R T V+ +H + I A V+ + +GR +
Sbjct: 174 ILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 4e-13
Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVI----SLIERFYEPLSGEILLDGNNIK-----GLDLKW 455
L+I G++VAL+G SGSGKST++ LI S I L G ++ D++
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS-HIELLGRTVQREGRLARDIRK 83
Query: 456 LRQQIGLVNQEPALF-ATTIRENILYGKDDAT------MEEITRAAKLSEAMSFISNLPE 508
R G + Q+ L ++ EN+L G +T TR K A+ +
Sbjct: 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQK-QRALQAL----- 137
Query: 509 RFETQVG------ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
T+VG +R LSGGQ+QR+AI+RA+++ ++L DE ++LD ES V +
Sbjct: 138 ---TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 563 LDRVMV--GRTTVVVAHRLS-TIRNAD-VIAVVQGRKIVKTGSHE 603
L + G T VV H++ +R + ++A+ QG S +
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239
|
Length = 262 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 4e-13
Identities = 58/181 (32%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 410 GKIVALVGGSGSGKSTVISLIE-RFY-EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
G+I+A++G SGSGKST+++ + R +G IL + K + ++ G V Q+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDD 149
Query: 468 ALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNL--PERFETQVGE---RGIQL 521
L+ T+RE +++ + +T+ K+ A S IS L + T +G RGI
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI-- 207
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESE-NSVQEALDRVMVGRTTVVVAHRLS 580
SGG+++R++I+ ++ NPS+L+LDE TS LDA + V G+T V H+ S
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267
Query: 581 T 581
+
Sbjct: 268 S 268
|
Length = 659 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 29/227 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-DLKWL--RQQIG 461
L + G+ + +VG SG GKST I + GE+ G ++ G+ D +W R I
Sbjct: 42 LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQ 101
Query: 462 LVNQEPALFAT-----TIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511
++ Q+P A+ TI E I Y + E R + + + NL R+
Sbjct: 102 MIFQDP--LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD----AESENSVQEALDRVM 567
+ SGGQ QRI I+RA++ P +++ DE SALD A+ N +Q+ L R M
Sbjct: 160 HE-------FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ-LQREM 211
Query: 568 VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
G + + +AH L+ +++ +D + V+ V+ G+++E+ NP Y
Sbjct: 212 -GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPY 257
|
Length = 331 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 54/208 (25%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA-LVQ 1100
+ + G+ + +G +G+GKST + +I + P +G V V G D+ + N K ++++I L +
Sbjct: 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPE 82
Query: 1101 QEPALFATSIYENI-----LYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGV 1155
P + E + +YG G + +E + PE + K+G
Sbjct: 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMI-----ELVGLRPEQHK-KIG---- 132
Query: 1156 QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRL 1215
QLS G +QRV +A+A++ +P++L+LDE T+ LD ++ ++ + + +T I+ H +
Sbjct: 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIM 192
Query: 1216 STIKN-ADQISVIESGKIIEQGTHSSLV 1242
++ D++ +I GKI+ L
Sbjct: 193 QEVEAICDRVIIINKGKIVADKKLDELS 220
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 71/253 (28%), Positives = 120/253 (47%), Gaps = 52/253 (20%)
Query: 1017 TIELRGVHFSYPSRPEVVIFK---DFNLKVRAGKSMALVGQSGSGKSTVLSL-ILRFYDP 1072
++ VHF S P F+ + V+ G+ + +VG+SGSGKS V SL I+ D
Sbjct: 5 NVDKLSVHFGDESAP----FRAVDRISYSVKQGEVVGIVGESGSGKS-VSSLAIMGLID- 58
Query: 1073 TAGKVMVD-----GIDIKRLNLKSLRK----HIALVQQEPALFATS----------IYEN 1113
G+VM + G D++R++ K R +A++ Q+P TS I E
Sbjct: 59 YPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM---TSLNPCYTVGFQIMEA 115
Query: 1114 ILYGKDGASEG------EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167
I + G + +++ + + S + P QLSGG QRV I
Sbjct: 116 IKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPH-----------QLSGGMSQRVMI 164
Query: 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTT--IIVAHRLSTI-KNADQI 1224
A A+ P++L+ DE T+ALDV + + + L L +K +++ H L+ + + A +I
Sbjct: 165 AMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI 224
Query: 1225 SVIESGKIIEQGT 1237
V+ +G+++E G
Sbjct: 225 IVMYAGQVVETGK 237
|
Length = 326 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 6e-13
Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 22/261 (8%)
Query: 358 MIERD---TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVA 414
M+ R+ + K S G + +E +D+S R A+ D ++ AG+IV
Sbjct: 237 MVGREVVLRVVKPPSTPGEVV------LEVEDLS-VKDRRGVTAVKD-VSFEVRAGEIVG 288
Query: 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLRQQIGLV----NQEPA 468
+ G +G+G+S ++ I +P SG ILL+G ++ G + R + V +
Sbjct: 289 IAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348
Query: 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI---QLSGGQ 525
+ ++ EN++ G+ D F L E F+ + LSGG
Sbjct: 349 VLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL-DRVMVGRTTVVVAHRLSTIRN 584
+Q++ ++R + + P +L+ + T LD + + E L + G+ ++++ L I
Sbjct: 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILE 468
Query: 585 -ADVIAVVQGRKIVKTGSHEE 604
+D IAV+ +IV EE
Sbjct: 469 LSDRIAVIYEGRIVGIVPPEE 489
|
Length = 501 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 6e-13
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 36/214 (16%)
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
+GH +D SF +P G I ALVG +GSGKST+ + F S
Sbjct: 18 NGHTALRDASF----------------TVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS 61
Query: 439 GEILLDGNNIKGLDLKWLRQQ-IGLVNQEPAL---FATTIRENILYGKDDATMEEITRAA 494
G+I + G + + L++ + V Q + F + + ++ G+ M + RA
Sbjct: 62 GKISILGQPTR----QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRY-GHMGWLRRAK 116
Query: 495 K-----LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
K ++ A++ + + R Q+GE LSGGQK+R+ ++RAI + ++LLDE +
Sbjct: 117 KRDRQIVTAALARVDMVEFRHR-QIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFT 171
Query: 550 ALDAESENSVQEALDRVM-VGRTTVVVAHRLSTI 582
+D ++E + L + G+T +V H L ++
Sbjct: 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 6e-13
Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 32/217 (14%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095
+D + V G ALVG +GSGKST+ ++ F +GK+ + G + ++L+K+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78
Query: 1096 -IALVQQEPAL---FATSIYENILYGKDG---------ASEGEVIEAAKLANAHSFISAL 1142
+A V Q + F + + ++ G+ G + +++ AA LA +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAA-LARVD-----M 132
Query: 1143 PEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE-RVVQQALQR 1201
E ++GE LSGGQK+RV +ARA+ + +++LLDE + +DV++E R++ +L R
Sbjct: 133 VEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARII--SLLR 186
Query: 1202 LMRK--RTTIIVAHRLSTIKNADQISVIESGKIIEQG 1236
+R +T ++ H L ++ +V+ G ++ G
Sbjct: 187 ELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 6e-13
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445
++ F Y +P + + +PAG ++ L G +G+GK+T++ LI P GEIL +
Sbjct: 6 ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 446 NNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILY----GKDDATMEEITRAAKLSEAM 500
+IK DL ++Q+ V + T+REN LY + E+ R L +
Sbjct: 63 QSIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI 121
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ L LS GQK+++A+ R + + LLDE ALD S
Sbjct: 122 DYPCGL--------------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS 162
|
Length = 200 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 7e-13
Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEIL----------------LDGN 446
I G+++ ++G SG+GKS ++ ++ YEP SG I+ G
Sbjct: 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80
Query: 447 NIKGLDLKWLRQQIGLVNQEPALFATTIREN--------ILYGKDDA------TMEEITR 492
+++ N L + LYG D +EEI
Sbjct: 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGY 140
Query: 493 AAKLSEAMSFISNLPERFETQVGER----GIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
K EA+ +L E Q+ R LSGG+KQR+ ++R + K P + L DE T
Sbjct: 141 EGK--EAVGRAVDLIE--MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPT 196
Query: 549 SALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605
LD ++ V AL+ + G + V+ +H I + +D ++ +I + G+ +E+
Sbjct: 197 GTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256
Query: 606 IS 607
++
Sbjct: 257 VA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 7e-13
Identities = 66/231 (28%), Positives = 96/231 (41%), Gaps = 20/231 (8%)
Query: 376 DKLSGHIEFKDVSFCYPSRPDVAIF--DKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
DK IE KDV + F L I G IV +VG +G GKST+ L
Sbjct: 332 DKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391
Query: 434 YEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRA 493
Y P GEILLDG + R LF+ + L+ DD +
Sbjct: 392 YIPQEGEILLDGAAVSADSRDDYRD----------LFSAIFADFHLF--DDLIGPDEGEH 439
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQ----LSGGQKQRIAISRAIVKNPSILLLDEATS 549
A L A ++ L + ++ + G LS GQ++R+A+ A +++ ILL DE +
Sbjct: 440 ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAA 499
Query: 550 ALDAESENSVQEAL--DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598
D + E L D G+T ++++H AD I + IVK
Sbjct: 500 DQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 8e-13
Identities = 61/221 (27%), Positives = 112/221 (50%), Gaps = 16/221 (7%)
Query: 1040 NLKVRAGKSMALVGQSGSGKSTVLSLI--LRFYDPTAG-KVMVDGIDIKRL-----NLKS 1091
+L + G+ +AL+G SGSGKST+L + L D +AG + + G ++R +++
Sbjct: 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83
Query: 1092 LRKHIALVQQEPALF-ATSIYENILYGKDGAS---EGEVIEAAKLANAHSFISALPEGYS 1147
R + + Q+ L S+ EN+L G G++ + + + G
Sbjct: 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV 143
Query: 1148 TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR- 1206
+R LSGGQ+QRVAIARA+++ +++L DE ++LD ES R+V L+ + +
Sbjct: 144 HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDG 203
Query: 1207 -TTIIVAHRLS-TIKNADQISVIESGKIIEQGTHSSLVENE 1245
T ++ H++ ++ ++I + G + G+ S +NE
Sbjct: 204 ITVVVTLHQVDYALRYCERIVALRQGHVFYDGS-SQQFDNE 243
|
Length = 262 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 9e-13
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Query: 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
+E ++V+F Y V + L I G+++ L+GG+GSGKST+ L+ Y+P SGE
Sbjct: 323 LELRNVTFAYQDNGFSVGPIN---LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTI------RENILYGKDDATMEEITRAA 494
ILLDG + + R+ V + LF + L + +E + A
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALV---EKWLERLKMAH 436
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
KL ISN ++LS GQK+R+A+ A+ + ILLLDE
Sbjct: 437 KLELEDGRISN-------------LKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 9e-13
Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 45/221 (20%)
Query: 1028 PSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST---VLSLILRFYDPTAGKVMVDGIDI 1084
R ++ I KDF+ V+ G+ + ++G+ GSG ST L+ G + +GI
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74
Query: 1085 KRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPE 1144
K + I V +E F T E ++ A + F+
Sbjct: 75 KE-FAEKYPGEIIYVSEEDVHFPTLTVR------------ETLDFALRCKGNEFV----- 116
Query: 1145 GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD-------VESERVVQQ 1197
RG+ SGG+++RV+IA A++ +L D +T LD ++ R +
Sbjct: 117 --------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD 166
Query: 1198 ALQRLMRKRTTIIVAHRLS--TIKNADQISVIESGKIIEQG 1236
L K TT + ++ S D++ V+ G+ I G
Sbjct: 167 VL-----KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-12
Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 29/255 (11%)
Query: 995 EVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQ 1054
EV+ R + GE + VE S R V KD + +VRAG+ + + G
Sbjct: 241 EVVLRVVKPPSTPGEVVLEVE--------DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGV 292
Query: 1055 SGSGKSTVLSLILRFYDPTAGKVMVDGIDIK-RLNLKSLRKH-IALV----QQEPALFAT 1108
+G+G+S ++ I P +G+++++G D+ RL+ + R+ +A V +
Sbjct: 293 AGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDL 352
Query: 1109 SIYENIL---YGKDGASEGEVIEAAKL-ANAHSFISAL---PEGYSTKVGERGVQLSGGQ 1161
S+ EN++ + K S G ++ + A I LSGG
Sbjct: 353 SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR----SLSGGN 408
Query: 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTT--IIVAHRLSTIK 1219
+Q++ +AR + + P++L+ + T LDV + + + L +R ++++ L I
Sbjct: 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL-LELRDAGKAVLLISEDLDEIL 467
Query: 1220 N-ADQISVIESGKII 1233
+D+I+VI G+I+
Sbjct: 468 ELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-12
Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDG-----N 446
V D L + AG+IV+L G +G+GKST++ ++ Y P GEI+ +G +
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQAS 74
Query: 447 NIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGK--------DDATMEEITRAAKLS 497
NI+ + R I +++QE AL ++ ENI G D M RA KL
Sbjct: 75 NIRDTE----RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM--YLRAQKLL 128
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+ N T VG L GQ+Q + I++A+ K +L+LDE T++L ESE
Sbjct: 129 AQLKLDINP----ATPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASL-TESET 179
Query: 558 SVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQ-GRKI 596
+V + R + G + ++H+L+ ++ +D I V++ GR I
Sbjct: 180 AVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-12
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 51/223 (22%)
Query: 1025 FSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM------ 1078
F YP P ++FK+ N + +A+VG +G GKST+L LI P++G V
Sbjct: 516 FGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVR 573
Query: 1079 --------VDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAA 1130
VDG+D+ P L+ + + K A G
Sbjct: 574 MAVFSQHHVDGLDL---------------SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG 618
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
LA L Y+ LSGGQK RVA A+ K P ILLLDE ++ LD++
Sbjct: 619 NLA--------LQPMYT---------LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD 661
Query: 1191 SERVVQQALQRLMRKRTTIIVAHRLSTIKNA-DQISVIESGKI 1232
+ + Q L ++ + ++V+H I + D++ V+ GK+
Sbjct: 662 AVEALIQGL--VLFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 54/244 (22%), Positives = 106/244 (43%), Gaps = 47/244 (19%)
Query: 1019 ELRGVHFSYPSRPEVVIFK---DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
L G+ S+ FK D +L V G+ ++G +G+GK+T++ +I P G
Sbjct: 4 YLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG 57
Query: 1076 KVMVDGIDIKRL------NLKSLRKHIALVQQEPALF-ATSIYEN--------------I 1114
V+ G D+ L RK Q+P +F +++EN +
Sbjct: 58 SVLFGGTDLTGLPEHQIARAGIGRKF-----QKPTVFENLTVFENLELALPRDKSVFASL 112
Query: 1115 LYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174
+ + + E + G + + LS GQKQ + I ++++
Sbjct: 113 FFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHGQKQWLEIGMLLMQD 161
Query: 1175 PEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKII 1233
P++LLLDE + + E + L+ L K + ++V H + +++ AD+++V+ G ++
Sbjct: 162 PKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221
Query: 1234 EQGT 1237
+G+
Sbjct: 222 AEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 3e-12
Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 67/232 (28%)
Query: 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
++ LS +DVSF ++ AG+IV + G G+G++ + +
Sbjct: 6 EVRGLSVKGAVRDVSF----------------EVRAGEIVGIAGLVGNGQTELAEALFGL 49
Query: 434 YEPLSGEILLDGNNIKGLD-LKWLRQQIGLVNQEP---ALFAT-TIRENILYGKDDATME 488
P SGEI LDG + +R I V ++ L ++ ENI
Sbjct: 50 RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL-------- 101
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
LSGG +Q++ ++R + ++P +L+LDE T
Sbjct: 102 -----------------------------SSLLSGGNQQKVVLARWLARDPRVLILDEPT 132
Query: 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLST-----IRNADVIAVV-QGR 594
+D ++ + + + V++ +S+ + D I V+ +GR
Sbjct: 133 RGVDVGAKAEIYRLIRELADAGKAVLL---ISSELDELLGLCDRILVMYEGR 181
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 9/213 (4%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN-NIKGLD-LKWLRQQIGL 462
+ G++ L+G +G+GK+T++ +I P GE+L DG+ ++ L + R IG
Sbjct: 26 FSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGR 85
Query: 463 VNQEPALF-ATTIRENI-LYGKDDATMEEITRAAKLSEAMSFISNLPE--RFETQVGERG 518
Q+P +F T+REN+ L D ++ A +E I L +
Sbjct: 86 KFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA 145
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESENSVQEALDRVMVGRTTVVVAH 577
LS GQKQ + I + ++P +LLLDE + + DAE+E E L + + +VV H
Sbjct: 146 ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK-TAELLKSLAGKHSILVVEH 204
Query: 578 RLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
+ +R AD + V+ ++ GS +E+ ++P
Sbjct: 205 DMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 42/235 (17%)
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVL-SLILRFYDPTA-------GKVMVDGIDIK 1085
I +D +L++ G+ AL+G++G+GKST+L +L A G V ++G +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 1086 RLNLKSL-RKHIALVQQEPALFATSIYENILYG------KDGAS---EGEVIEAAKLANA 1135
++ L R L Q FA S E +L G + GA +GE+ A LA A
Sbjct: 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA-LALA 133
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLK---------NPEILLLDEATSA 1186
G + VG LSGG+ RV AR + + P LLLDE T+A
Sbjct: 134 ---------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAA 184
Query: 1187 LDVESERVVQQALQRLMRK----RTTIIVAHRLSTIKNADQISVIESGKIIEQGT 1237
LD+ + + ++RL R I+ L+ ++AD+I+++ G I+ G
Sbjct: 185 LDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 4e-12
Identities = 49/207 (23%), Positives = 98/207 (47%), Gaps = 14/207 (6%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
L G+++ L+G +G+GK+T++ I P G + + G + + IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 465 QEPAL---FATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI-Q 520
Q F ++ ++ G+ R +++ + L T++ +R + +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGR--TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE 113
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL 579
LSGGQ+QR+ ++RA+ PS+LLLDE + LD ++ + E + G ++ H L
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 580 -STIRNADVIAVVQGRKIVKTGSHEEL 605
+ D + ++ GR ++ G+ ++L
Sbjct: 174 AQAMATCDRVVLLNGR-VIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 4e-12
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 25/217 (11%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--PLSGEILLDGNNIKGLDL 453
V D L++ G+ V L G +G+GKST++ ++ Y GEI G+ +K ++
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72
Query: 454 KWL-RQQIGLVNQEPALFAT-TIRENILYGK---------DDATMEEITRAAKLSEAMSF 502
+ R I +++QE L ++ ENI G M RA L +
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM--YLRAKNLLRELQ- 129
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESENSVQE 561
+ VG+ G GGQ+Q + I++A+ K +L+LDE +S+L + E+E +
Sbjct: 130 LDADNV--TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI 183
Query: 562 ALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ-GRKI 596
D G V ++H+L+ ++ D I V++ G+ +
Sbjct: 184 IRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 42/179 (23%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ G + AL+G SG+GK+T++ ++ ++GEIL++G + K ++ G V
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVE 85
Query: 465 QEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
Q+ T+RE + + +A L RG LS
Sbjct: 86 QQDVHSPNLTVREALRF------------SALL--------------------RG--LSV 111
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLST 581
Q++R+ I + PSIL LDE TS LD+++ ++ L ++ G+ + H+ S
Sbjct: 112 EQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-12
Identities = 69/242 (28%), Positives = 123/242 (50%), Gaps = 30/242 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
++L+G+ ++P V L V G+ MALVG++G+GKST++ ++ Y AG +
Sbjct: 5 LQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI 61
Query: 1078 MVDGIDIKRLNLKSLRKH----IALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKL 1132
+ G K + + I ++ QE L +I ENI G++ + I+ K+
Sbjct: 62 LYLG---KEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKM 118
Query: 1133 -ANAHSFISALPEGYSTK--VGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL-D 1188
A A ++ L +S+ VGE LS G++Q V IA+ + +++++DE T AL D
Sbjct: 119 YAEADKLLARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174
Query: 1189 VESERVVQQALQRLMRK-----RTTIIVAHRLSTI-KNADQISVIESGKIIEQGTHSSLV 1242
E+E +L R++R+ R + ++HRL I + D ++V G+ I + + L
Sbjct: 175 TETE-----SLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229
Query: 1243 EN 1244
E+
Sbjct: 230 ED 231
|
Length = 501 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 6e-12
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 30/184 (16%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR-QQIGLVNQ 465
G+ +AL+G SGSGKST+++++ + SGE+ L G + +D + LR + +G V Q
Sbjct: 36 GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQ 95
Query: 466 EPALFAT-TIRENI-----LYGKDDATMEEITRAAKLSEAMSF---ISNLPERFETQVGE 516
L T EN+ L G+ A L E + + +LP
Sbjct: 96 SFMLIPTLNALENVELPALLRGESSRQSRN--GAKALLEQLGLGKRLDHLPA-------- 145
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE---ALDRVMVGRTTV 573
QLSGG++QR+A++RA P +L DE T LD ++ + + + +L+R G T +
Sbjct: 146 ---QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-GTTLI 201
Query: 574 VVAH 577
+V H
Sbjct: 202 LVTH 205
|
Length = 228 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 14/154 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGLV 463
L + +G+IV L+G +G+GK+T ++ +G I++D +I L L R+ IG +
Sbjct: 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
Query: 464 NQEPALFAT-TIREN---ILYGKDDATMEE-ITRAAKLSEAMSFISNLPERFETQVGERG 518
QE ++F ++ +N +L +DD + E+ RA +L E I +L + G
Sbjct: 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH-IEHLRDSM-------G 135
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
LSGG+++R+ I+RA+ NP +LLDE + +D
Sbjct: 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 6e-12
Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 28/226 (12%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQQ 459
+ L + G++ ++G +G+GK+T++ +I P G +L G ++ GL + R
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78
Query: 460 IGLVNQEPALF-ATTIREN-------------ILYGKDDATMEEITRAAKLSEAMSFISN 505
IG Q+P +F T+ EN L+ + A ++ ++ E + I
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKD-----RIEEVLETI-G 132
Query: 506 LPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESENSVQEALD 564
L + + G LS GQKQ + I ++++P +LLLDE + + D E+E + E L
Sbjct: 133 LADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA-ELLK 187
Query: 565 RVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
+ + VVV H + +R+ AD + V+ ++ GS +++ ++P
Sbjct: 188 SLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 29/178 (16%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV----DGIDI----KR 1086
+ ++ +L V AG+ + L G SGSGKST+L + Y P G+++V + +D+ R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1087 LNLKSLRKHIALVQQ----EPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISAL 1142
L+ R I V Q P + A + L + G E A+ A A ++ L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR-----GVPREVAR-AKAADLLTRL 139
Query: 1143 PEGYSTKVGERGVQL-----SGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVV 1195
+ ER L SGG++QRV IAR + + ILLLDE T++LD + VV
Sbjct: 140 ------NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
|
Length = 235 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL---RFYDPTAGKVMVDGIDIKRLNLKS 1091
I + NL+VR G+ A++G +GSGKST LS L Y+ T G V G D+ L+ +
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKST-LSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 1092 LR-KHIALVQQEPA---------LFATSIYENILYGKDGASEGEVIEAAKLANAHSFISA 1141
+ I + Q P T++ N + G + + L +
Sbjct: 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTAL--NAVRSYRGQEPLDRFDFQDLMEEKIALLK 132
Query: 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR 1201
+PE T+ V SGG+K+R I + + PE+ +LDE+ S LD+++ ++V +
Sbjct: 133 MPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNS 190
Query: 1202 LMR-KRTTIIVAHR---LSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
L KR+ IIV H L IK D + V+ G+I++ G + + + E+ Y L Q
Sbjct: 191 LRDGKRSFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 248
|
Length = 248 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 8e-12
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
++P G+I L+G +G+GK+T +I EP GEI +G + + ++ +IG +
Sbjct: 23 FEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRIGYLP 78
Query: 465 QEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET--QVGERGIQL 521
+E L+ T+ + + Y + M +E + ER E + ++ +L
Sbjct: 79 EERGLYPKMTVEDQLKYLAELKGM-------PKAEIQKKLQAWLERLEIVGKKTKKIKEL 131
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-----GRTTVVVA 576
S G +Q+I A++ P +L+LDE S LD + E L + G T + +
Sbjct: 132 SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVN----VELLKDAIFELKEEGATIIFSS 187
Query: 577 HRLSTI 582
HR+ +
Sbjct: 188 HRMEHV 193
|
Length = 300 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-11
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 19/176 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ F VS Y + + L I G+IV L+G +G+GK+T++ + SG I
Sbjct: 6 LSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 442 LLDGNNIKGLDL-KWLRQQIGLVNQEPALFA-TTIRENILYG----KDDATMEEITRAAK 495
+ DG +I K +R+ + +V + +F+ T+ EN+ G + D E I +
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYE 122
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
L P E ++ +R +SGG++Q +AI RA++ P +LLLDE + L
Sbjct: 123 L---------FPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 57/243 (23%), Positives = 120/243 (49%), Gaps = 30/243 (12%)
Query: 1010 ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
E+ N+ T R F R V K + +R G+++A++G++GSGKST+ ++
Sbjct: 6 EVRNLSKTFRYRTGWFR---RQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62
Query: 1070 YDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSI--YENILYGKDGASEGEVI 1127
+PT+G++++D + + + I ++ Q+P+ TS+ + I +++
Sbjct: 63 IEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPS---TSLNPRQRI---------SQIL 110
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGV----------QLSGGQKQRVAIARAVLKNPEI 1177
+ N + + + G+ L+ GQKQR+ +ARA++ P++
Sbjct: 111 DFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKV 170
Query: 1178 LLLDEATSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIE 1234
++ DEA ++LD+ + + L K+ + I V L +K+ +DQ+ V+ G+++E
Sbjct: 171 IIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230
Query: 1235 QGT 1237
+G+
Sbjct: 231 RGS 233
|
Length = 267 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-11
Identities = 53/224 (23%), Positives = 104/224 (46%), Gaps = 31/224 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ-IGLV 463
L + G+I AL+G +G+GKST++ ++ +EP G I ++ N LD K Q IG++
Sbjct: 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85
Query: 464 NQEPALF-ATTIRENILYGK------------DDATMEEITRAAKLSEAMSFISNLPERF 510
QE ++ T+ EN+ G+ D M M L
Sbjct: 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRA------AMMLLRVGLKVDL 139
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-G 569
+ +V LS KQ + I++ ++ + ++++DE TS+L + + + ++++ G
Sbjct: 140 DEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG 195
Query: 570 RTTVVVAHRLSTIRN-ADVIAVVQ-----GRKIVKTGSHEELIS 607
V ++H+L+ IR D V++ +V S+++++
Sbjct: 196 TAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVR 239
|
Length = 510 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 62/233 (26%)
Query: 1020 LRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV 1079
+ V P P+ I KD +L G + ++G +G+GKST+L ++M
Sbjct: 7 MNRVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMA 52
Query: 1080 DGIDIKRLNLKSLRK---HIALVQQEPALFAT-SIYENILYG------------------ 1117
G+D K N ++ + + QEP L T ++ EN+ G
Sbjct: 53 -GVD-KEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKF 110
Query: 1118 --------KDGASEGEVIEAAKLANAHSFISAL---------PEGYSTKVGERGVQLSGG 1160
A + E+ E A+A L P V + LSGG
Sbjct: 111 AEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADVTK----LSGG 165
Query: 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
+++RVA+ R +L P++LLLDE T+ LD ES ++Q LQ T + V H
Sbjct: 166 ERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 11/229 (4%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
D+ + G+IV +G +G+GKST + +I + P SG + + G ++ + K +++ I
Sbjct: 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNI 77
Query: 461 G-LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
G L P +RE + + M+ ++ E + + PE+ + ++G
Sbjct: 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KIG---- 132
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
QLS G +QR+ +++A++ +P +L+LDE T+ LD ++ + + +T ++ H +
Sbjct: 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIM 192
Query: 580 STIRNA--DVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQ 626
+ VI + +G KIV +EL S N V+ +E Q
Sbjct: 193 QEVEAICDRVIIINKG-KIVADKKLDEL-SAANKKQVIEVEFEEQIDLQ 239
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-11
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 55/185 (29%)
Query: 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
P KI ++G +G+GKST++ ++ + +GE IK +G + QEP
Sbjct: 30 PGAKI-GVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-IK----------VGYLPQEP 77
Query: 468 ALFAT-TIRENI-------------------LYGKDDATMEE-ITRAAKLSE-------- 498
L T T+REN+ + + DA M+ + A+L E
Sbjct: 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAW 137
Query: 499 --------AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
AM + P ++ V + LSGG+++R+A+ R ++ P +LLLDE T+
Sbjct: 138 DLDRKLEIAMDAL-RCPP-WDADVTK----LSGGERRRVALCRLLLSKPDMLLLDEPTNH 191
Query: 551 LDAES 555
LDAES
Sbjct: 192 LDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 4e-11
Identities = 37/194 (19%), Positives = 60/194 (30%), Gaps = 58/194 (29%)
Query: 1046 GKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPAL 1105
G+ + +VG GSGK+T+ + R P G V+ + + I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 1106 FATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165
VG + SG + R+
Sbjct: 54 --------------------------------------------VGGKKASGSGELRLRL 69
Query: 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQA------LQRLMRKRTTIIVAHRLSTIK 1219
A+A A P++L+LDE TS LD E E ++ L K T+I+
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 1220 NADQISVIESGKII 1233
+ +I+
Sbjct: 130 GPALLRRRFDRRIV 143
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 62/252 (24%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG--- 461
+DIP G + + G SGSGKS++I + Y L+ + L D + I
Sbjct: 16 VDIPLGVLTCVTGVSGSGKSSLI--NDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVI 73
Query: 462 LVNQEP-------------ALFATTIRE----------------NILY-GKDDATMEEIT 491
+++Q P +F IRE + Y GK A + ++T
Sbjct: 74 VIDQSPIGRTPRSNPATYTGVF-DEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMT 132
Query: 492 RAAKLSEAMSFISNLP---ERFET---------QVGERGIQLSGGQKQRIAISRAIVK-- 537
+ EA+ F N+P + +T ++G+ LSGG+ QRI +++ + K
Sbjct: 133 ----VEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 188
Query: 538 -NPSILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNADVI------A 589
++ +LDE T+ L + E L R V G T VV+ H L I+ AD I
Sbjct: 189 TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEG 248
Query: 590 VVQGRKIVKTGS 601
G ++V +G+
Sbjct: 249 GDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 5e-11
Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 1046 GKSMALVGQSGSGKSTVLSLIL-RFYDPT-AGKVMVDGIDIKRLNLKSLRKHIALVQQEP 1103
G+ +A++G SGSGKST+L+ + R G ++ + R K + K V Q+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN----RKPTKQILKRTGFVTQDD 149
Query: 1104 ALFA-TSIYENILYGKDGASEGEVIEAAKLANAHSFIS--ALPEGYSTKVGE---RGVQL 1157
L+ ++ E +++ + + K+ A S IS L + +T +G RG+
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI-- 207
Query: 1158 SGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVA-HRLS 1216
SGG+++RV+IA +L NP +L+LDE TS LD + + L L +K TI+ + H+ S
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267
Query: 1217 T--IKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
+ + D + V+ G+ + G S + AYF+ +
Sbjct: 268 SRVYQMFDSVLVLSEGRCLFFGKGSDAM-----AYFESVGFS 304
|
Length = 659 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 6e-11
Identities = 59/217 (27%), Positives = 110/217 (50%), Gaps = 22/217 (10%)
Query: 1029 SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN 1088
S P V + NLKVR AL+G++G+GKST+L + Y +G ++ G K ++
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG---KEID 63
Query: 1089 LKS----LRKHIALVQQEPALF-ATSIYENILYGKDGASEGEVIEAAKLANAHSFISALP 1143
KS L I++V QE L S+ +N+ G+ ++G ++ K+ A+
Sbjct: 64 FKSSKEALENGISMVHQELNLVLQRSVMDNMWLGR-YPTKGMFVDQDKMYRD---TKAIF 119
Query: 1144 EGYSTKVG--ERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQ---QA 1198
+ + + LS Q Q + IA+A N +I+++DE TS+L +E+ V
Sbjct: 120 DELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL---TEKEVNHLFTI 176
Query: 1199 LQRLMRKRTTII-VAHRLSTI-KNADQISVIESGKII 1233
+++L + I+ ++H++ I + D+I+++ G+ I
Sbjct: 177 IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-11
Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 55/291 (18%)
Query: 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKS----TVISL 429
+DKLS H + F D+ + G++V +VG SGSGKS ++ L
Sbjct: 5 NVDKLSVHFGDESAPF--------RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56
Query: 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIG----LVNQEPALFATTIRENILYGKDDA 485
I+ ++ ++ +G +++ + K R +G ++ Q+P T++ N Y
Sbjct: 57 IDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM---TSL--NPCYTVGFQ 111
Query: 486 TMEEI------TRAAKLSEAMSFISNLPERFETQVGERGI------------QLSGGQKQ 527
ME I + + A+ + QVG I QLSGG Q
Sbjct: 112 IMEAIKVHQGGNKKTRRQRAIDLL--------NQVG---IPDPASRLDVYPHQLSGGMSQ 160
Query: 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTT--VVVAHRLSTI-RN 584
R+ I+ AI P +L+ DE T+ALD + + E L + V++ H L+ +
Sbjct: 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEA 220
Query: 585 ADVIAVVQGRKIVKTGSHEELISNPNSAY--AALVQLQEAASQQSNSSQCP 633
A I V+ ++V+TG ++ P Y A L L E A ++ + P
Sbjct: 221 AHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLRALPEFAQDKARLASLP 271
|
Length = 326 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 8e-11
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 30/184 (16%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERF--------YEPLSGEILLDGNNIKGLDLKWL 456
L+I G +VA+VG SG+GK+T++ +I Y P SG++ + N + L
Sbjct: 404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEY 463
Query: 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGE 516
+ G V L + T D EI A LS+A+ + E
Sbjct: 464 EPEFGEVTILEHLRSKT--------GDLNAAVEILNRAGLSDAVLYRRKFSE-------- 507
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTVV 574
LS GQK+R +++ + + P++LL+DE + LD + V + + G T +V
Sbjct: 508 ----LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563
Query: 575 VAHR 578
V HR
Sbjct: 564 VTHR 567
|
Length = 593 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 9e-11
Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 21/211 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR------- 457
+IP G+IV +G +G+GKST + ++ P SG++ ++G + ++LR
Sbjct: 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMG 104
Query: 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGER 517
Q++ L PAL + + + ++Y D E R L+E + E +
Sbjct: 105 QKLQLWWDLPALDSLEVLK-LIYEIPDDEFAE--RLDFLTEILD--------LEGFLKWP 153
Query: 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR-TTVVVA 576
+LS GQ+ R ++ A++ P +L LDE T LD ++ +++E L R TV++
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT 213
Query: 577 -HRLSTI-RNADVIAVVQGRKIVKTGSHEEL 605
H I D + ++ ++V G+ +L
Sbjct: 214 THIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
|
Length = 325 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-10
Identities = 65/263 (24%), Positives = 118/263 (44%), Gaps = 50/263 (19%)
Query: 394 RPDVAIFDKFCLDIPAGKIVALVGGSGSGKS-TVISLIERFYEPLSGEI-----LLDGNN 447
+ +A + G+ +A+VG SGSGKS T ++L+ R E G + LL +
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRS 84
Query: 448 IKGLDLKWLRQQ---------IGLVNQEPAL-----------FATTIRENILYGKDDATM 487
+ ++L + ++ QEP A +IR + +++A +
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144
Query: 488 E--EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545
E + ++ EA + +S P QLSGG +QR+ I+ A+ P++L+ D
Sbjct: 145 EAKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 546 EATSALDAESENSVQEALDRVM---VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601
E T+ALD + + + L +V+ + + + H + + AD + V+ + V+TGS
Sbjct: 194 EPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
Query: 602 HEELISNPNSAY-----AALVQL 619
E++ P Y AA+ QL
Sbjct: 253 VEQIFHAPQHPYTRALLAAVPQL 275
|
Length = 623 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL--DGNNIKGLD---- 452
+ L + AG+ V L G SGSGKST++ + Y P G+IL+ +G + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 453 --LKWLRQQIGLVNQEPALFATTI-RENILYGKDDATMEE-----ITRAAKLSEAMSFIS 504
L+ R IG V+Q F I R + L D E + R ++A ++
Sbjct: 86 EVLEVRRTTIGYVSQ----FLRVIPRVSAL----DVVAEPLLARGVPREVARAKAADLLT 137
Query: 505 --NLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
NLPER + SGG++QR+ I+R + + ILLLDE T++LDA + V E
Sbjct: 138 RLNLPERLWSLAPA---TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVEL 194
Query: 563 LD 564
+
Sbjct: 195 IR 196
|
Length = 235 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 45/241 (18%)
Query: 1038 DFNLKVRAG-----KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL 1092
+F L+V G + + ++G +G GK+T + ++ P G + ++ + S
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV------SY 65
Query: 1093 RKHIALVQQEPALFATSIYENILYGKDGAS------EGEVIEAAKLANAHSFISALPEGY 1146
+ Q A + ++ + +L + E+ + ++
Sbjct: 66 KP-----QYIKADYEGTVRD-LLSSITKDFYTHPYFKTEIAKPLQI-------------- 105
Query: 1147 STKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-- 1203
++ +R V +LSGG+ QRVAIA + K+ +I LLDE ++ LDVE + + ++R
Sbjct: 106 -EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164
Query: 1204 RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGA--YFKLINLQQRQD 1260
++T +V H + I AD++ V E G+ G + G + K +++ R+D
Sbjct: 165 NEKTAFVVEHDIIMIDYLADRLIVFE-GEPSVNGVANPPQSLRSGMNRFLKNLDITFRRD 223
Query: 1261 P 1261
P
Sbjct: 224 P 224
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-10
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 49/219 (22%)
Query: 1036 FKDFNLKV-RAGKSMALVGQSGSGKSTVLSL--------------------ILRFYDPTA 1074
FK + L + + GK ++G +G GK+T + + +L+ +
Sbjct: 88 FKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRF---R 144
Query: 1075 GKVMVDGI-DIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKD--GASEGEVIEAAK 1131
G + + + +K + K V P +F + E +L D G + EV+E
Sbjct: 145 GTELQNYFKKLYNGEIKVVHK-PQYVDLIPKVFKGKVRE-LLKKVDERGKLD-EVVERLG 201
Query: 1132 LANAHSFISALPEGYSTKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
L N + +R + +LSGG+ QRVAIA A+L++ + DE TS LD+
Sbjct: 202 LEN---------------ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR 246
Query: 1191 SERV-VQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVI 1227
+R+ V + ++ L + ++V H L+ + AD + +
Sbjct: 247 -QRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 34/186 (18%)
Query: 1029 SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN 1088
R E ++F + + AG+ + + G +G+GK+++L ++ P AG+V+ G I+R
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 1089 LKSLRK-----HIALVQQEPALFATSIYEN--ILYGKDGASEGEVIEAAKLANAHSFISA 1141
+ + H ++ L A EN G + E + A LA
Sbjct: 70 DEYHQDLLYLGHQPGIK--TELTA---LENLRFYQRLHGPGDDEALWEA-LA-------- 115
Query: 1142 LPEGYSTKVGERGV------QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVV 1195
+VG G QLS GQ++RVA+AR L + +LDE +A+D + +
Sbjct: 116 -------QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL 168
Query: 1196 QQALQR 1201
+ L +
Sbjct: 169 EALLAQ 174
|
Length = 204 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 2e-10
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 55/185 (29%)
Query: 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467
P KI ++G +G+GKST++ ++ + GE G+ ++G + QEP
Sbjct: 32 PGAKI-GVLGLNGAGKSTLLRIMAGVDKEFEGEARPA----PGI-------KVGYLPQEP 79
Query: 468 ALFAT-TIRENI-------------------LYGKDDATMEE-ITRAAKLSE-------- 498
L T+REN+ Y + DA + +L E
Sbjct: 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAW 139
Query: 499 --------AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
AM + P + +V +LSGG+++R+A+ R +++ P +LLLDE T+
Sbjct: 140 DLDSQLEIAMDAL-RCPPW-DAKVT----KLSGGERRRVALCRLLLEKPDMLLLDEPTNH 193
Query: 551 LDAES 555
LDAES
Sbjct: 194 LDAES 198
|
Length = 556 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI--ERFYEPLSGEILLDGNNIKGLDL 453
D I L + G+I A++G +GSGKST+ I YE SG IL G ++ L+L
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL--LEL 69
Query: 454 K---WLRQQIGLVNQEP--------ALF---ATTIRENILYGKDDATMEEITRAAKLSEA 499
+ R + L Q P F A R + + ++ +
Sbjct: 70 EPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+ R G SGG+K+R I + + P + +LDE S LD ++ V
Sbjct: 130 LGMDEEFLNRS-VNEG-----FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIV 183
Query: 560 QEALDRVMV-GRTTVVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
E ++R+ R+ +++ H RL D + V+ +IVK+G E
Sbjct: 184 AEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 39/170 (22%)
Query: 1043 VRAGKSMALVGQSGSGKSTVLS-LILRFYDPT-AGKVMVDGIDIKRLNLKSLRKHIALVQ 1100
V+ G AL+G+SG+GK+T+L L R G+++++G + K+ ++ V+
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVE 85
Query: 1101 QEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160
Q+ V EA + SAL G LS
Sbjct: 86 QQDVHSPNL---------------TVREALRF-------SALLRG-----------LSVE 112
Query: 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTII 1210
Q++R+ I + P IL LDE TS LD ++ + + L++L I+
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAIL 162
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-10
Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 20/201 (9%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
+ P V L++ G+++ALVG +G+GKST++ ++ Y +G IL G +
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72
Query: 453 LKWLRQQ-IGLVNQEPALFAT-TIRENILYGKDDAT-MEEITRAAKLSEAMSFIS--NLP 507
K ++ IG+++QE L TI ENI G++ I +EA ++ NL
Sbjct: 73 PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR 132
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-DAESENSVQEALDRV 566
+ VGE LS G++Q + I++ + ++++DE T AL D E+ E+L RV
Sbjct: 133 FSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET-----ESLFRV 183
Query: 567 M-----VGRTTVVVAHRLSTI 582
+ GR V ++HRL I
Sbjct: 184 IRELKSQGRGIVYISHRLKEI 204
|
Length = 501 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 40/233 (17%)
Query: 1040 NLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP----TAGKVMVDGIDIKRLNLKSLRK- 1094
++ + G+ LVG+SGSGKS + I TA ++ D ID+ RL+ + RK
Sbjct: 27 SMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKL 86
Query: 1095 ---HIALVQQEPAL-------FATSIYENI-----------LYGKDGASEGEVIEAAKLA 1133
+++++ QEP + +NI +G E++ +
Sbjct: 87 VGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIK 146
Query: 1134 NAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER 1193
+ + + P +L+ G+ Q+V IA A+ P +L+ DE T++++ ++
Sbjct: 147 DHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQA 195
Query: 1194 VVQQALQRLMRKRTTII--VAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243
+ + L RL + T I ++H L I AD+I+V+ G+ +E LV
Sbjct: 196 QIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248
|
Length = 330 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 6e-10
Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 61/199 (30%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGE-ILLDGNNIKGLDLKWLRQQIGLVNQEPA 468
G+++ +VG GSGK+T+ + R P G I +DG +I L L I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528
VG + SG + R
Sbjct: 54 ---------------------------------------------VGGKKASGSGELRLR 68
Query: 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALD-------RVMVGRTTVVVAHRLST 581
+A++ A P +L+LDE TS LDAE E + + + T ++ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 582 IRNADVIAVVQGRKIVKTG 600
+ A + R ++
Sbjct: 129 LGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 7e-10
Identities = 60/231 (25%), Positives = 93/231 (40%), Gaps = 78/231 (33%)
Query: 1031 PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID------- 1083
P+ I KD +L G + ++G +G+GKST+L ++M G+D
Sbjct: 18 PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMA-GVDKEFEGEA 64
Query: 1084 -----IKRLNLKSLRKHIALVQQEPALFAT-SIYENI-------------------LYGK 1118
IK + + QEP L ++ EN+ Y +
Sbjct: 65 RPAPGIK----------VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAE 114
Query: 1119 DGASEGEVI-EAAKL------ANAHSFISAL---------PEGYSTKVGERGVQLSGGQK 1162
A + E +L A+A S L P KV +LSGG++
Sbjct: 115 PDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKVT----KLSGGER 169
Query: 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
+RVA+ R +L+ P++LLLDE T+ LD ES ++Q L T + V H
Sbjct: 170 RRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTH 218
|
Length = 556 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 9e-10
Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 46/251 (18%)
Query: 374 KLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433
++ LSG + +DVSF + AG+I+ + G G+G++ + +
Sbjct: 265 EVRNLSGGGKVRDVSF----------------TVRAGEILGIAGLVGAGRTELARALFGA 308
Query: 434 YEPLSGEILLDGNNIKGLD-LKWLRQQIGLV---NQEPALFAT-TIRENILYGKDDATME 488
SGEILLDG ++ ++ I V + L +I ENI
Sbjct: 309 RPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSR 368
Query: 489 E--ITRAAKLSEAMSFISNLPERF---ETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543
I R + + A +I L + E +G LSGG +Q++ ++R + +P +L+
Sbjct: 369 RGLIDRRKERALAERYIRRLRIKTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLI 424
Query: 544 LDEATSALD--AESE--NSVQEALDRVMVGRTTVVVAHRLST-----IRNADVIAVVQGR 594
LDE T +D A++E ++E G+ +++ S+ + +D I V++
Sbjct: 425 LDEPTRGIDVGAKAEIYRLIRELAAE---GKAILMI----SSELPELLGLSDRILVMREG 477
Query: 595 KIVKTGSHEEL 605
+IV EE
Sbjct: 478 RIVGELDREEA 488
|
Length = 500 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 9e-10
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 23/216 (10%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERF--YEPLSGEILLDGNNIKGLDLKWLRQQIGL 462
L I G+I A++G +GSGKST+ +I Y+ L G+IL G +I L+ + R +G+
Sbjct: 28 LSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-ERAHLGI 86
Query: 463 ------------VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510
V+ L + G + ++ + ++E + + + F
Sbjct: 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPE--LDPLEFLEIINEKLKLV-GMDPSF 143
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VG 569
++ G SGG+K+R I + + + + +LDE S LD ++ + E ++++M
Sbjct: 144 LSRNVNEG--FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSE 201
Query: 570 RTTVVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
+ +++ H RL D + V+Q KI+KTG E
Sbjct: 202 NSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237
|
Length = 252 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 33/241 (13%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI---------KGLDLKW 455
L + AG A VG +GSGKS + + LSGE ++I K + +W
Sbjct: 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83
Query: 456 LRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSF-ISNLPERFETQV 514
R +++ T E I D R +L A F I+ L +R
Sbjct: 84 QRNNTDMLSPGEDDTGRTTAEIIQDEVKDPA-----RCEQL--AQQFGITALLDR----- 131
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTV 573
R LS G+ ++ + +A++ P +L+LDE LD S + E L + G T V
Sbjct: 132 --RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189
Query: 574 VVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQC 632
+V +R I + V+ + +TG EE++ ALV Q A S+Q Q
Sbjct: 190 LVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ------ALVA-QLAHSEQLEGVQL 242
Query: 633 P 633
P
Sbjct: 243 P 243
|
Length = 490 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 2e-09
Identities = 23/44 (52%), Positives = 37/44 (84%)
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL 563
QLSGG+K R+A+++ +++NP++LLLDE T+ LD ES +++EAL
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL 113
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 42/180 (23%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL- 451
R + +F + AG++V + G +G+GK++++ ++ P +GE+L G I+
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 452 -----DLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNL 506
DL +L Q G+ K + T E L +
Sbjct: 70 DEYHQDLLYLGHQPGI-------------------KTELTALE-----NLRFYQR-LHGP 104
Query: 507 PERFET-----QVGERGI------QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+ QVG G QLS GQ++R+A++R + + +LDE +A+D +
Sbjct: 105 GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164
|
Length = 204 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-09
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 1155 VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVA 1212
+ LSGG+ QRVAIA A+L+N L DE ++ LD+E +A++RL K+T ++V
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 1213 HRLSTIKN-ADQISVIE 1228
H L+ + +D+I V E
Sbjct: 130 HDLAVLDYLSDRIHVFE 146
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-09
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 43/207 (20%)
Query: 1036 FKDFNLKV-RAGKSMALVGQSGSGKSTVLSLIL---------RFYDPT---------AGK 1076
FK + L R GK + ++G +G GKST L IL R+ DP G
Sbjct: 89 FKLYRLPTPRPGKVVGILGPNGIGKSTALK-ILAGELKPNLGRYEDPPSWDEVIKRFRGT 147
Query: 1077 VMVDGI-DIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANA 1135
+ + + L+++ K V P + +G+V E K +
Sbjct: 148 ELQNYFKKLYEGELRAVHK-PQYVDLIPKVV----------------KGKVGELLKKVDE 190
Query: 1136 HSFISALPEGYS-TKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER 1193
+ E V +R V +LSGG+ QRVAIA A+L++ ++ DE +S LD+ +R
Sbjct: 191 RGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIR-QR 249
Query: 1194 V-VQQALQRLMR-KRTTIIVAHRLSTI 1218
+ + ++ L + I+V H L+ +
Sbjct: 250 LNAARVIRELAEDGKYVIVVEHDLAVL 276
|
Length = 591 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-09
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 1152 ERGVQ-LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTT 1208
ER V LSGG+ QRVAIA A+ + ++ LLDE ++ LDVE +V + ++R + ++T
Sbjct: 450 ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509
Query: 1209 IIVAHRLSTIKN-ADQISVIE 1228
++V H + I +D++ V E
Sbjct: 510 LVVDHDIYMIDYVSDRLIVFE 530
|
Length = 591 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 6e-09
Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 38/221 (17%)
Query: 988 QMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGK 1047
++ + F+ + ++ G L + IE + + + ++ D + K+ G
Sbjct: 295 ELLSQEFQKRNETAEIYIPPGPRLGDK--VIEAENLSKGFGDK---LLIDDLSFKLPPGG 349
Query: 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALV-QQEPALF 1106
+ ++G +G+GKST+ +I P +G + + G +K +A V Q AL
Sbjct: 350 IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVK----------LAYVDQSRDALD 398
Query: 1107 AT-SIYENILYGKDGASEG-EVIEAAKLA-NAHSFISALPEGYS-----TKVGERGVQLS 1158
+++E I S G ++I+ K + +++ + KVG QLS
Sbjct: 399 PNKTVWEEI-------SGGLDIIQLGKREVPSRAYVGRF--NFKGSDQQKKVG----QLS 445
Query: 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL 1199
GG++ RV +A+ + +LLLDE T+ LDVE+ R +++AL
Sbjct: 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL 486
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-09
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 39/190 (20%)
Query: 401 DKFCLDIPAG-----KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
+F L++ G +++ ++G +G GK+T I ++ +P G+I ++ + + +
Sbjct: 11 GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-----Y 65
Query: 456 LRQQIGLVNQEPALFATTIRENILYGKDDATME------EITRAAKLSEAMSFISNLPER 509
Q I A + T+R+ +L EI + ++ + + +PE
Sbjct: 66 KPQYI------KADYEGTVRD-LLSSITKDFYTHPYFKTEIAKPLQIEQILD--REVPE- 115
Query: 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569
LSGG+ QR+AI+ + K+ I LLDE ++ LD E + + R
Sbjct: 116 -----------LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164
Query: 570 --RTTVVVAH 577
+T VV H
Sbjct: 165 NEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 46/237 (19%)
Query: 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVI-SLIERFYEP-------LSGEILLDGNNIK 449
AI L I G++ AL+G +G+GKST++ +L ++G++ L+G +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 450 GLDLKWLRQQIGLVNQ--EPALFATTIRENILYGK----------DDATMEEITRAAKLS 497
+D L + ++ Q +PA FA + RE +L G+ E +A L+
Sbjct: 75 AIDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK---------NPSILLLDEAT 548
A VG LSGG+ R+ +R + + P LLLDE T
Sbjct: 134 GA-----------TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 549 SALDAESENSVQEALDRVM----VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601
+ALD ++ + + + R+ +G +V L+ R+AD IA++ IV G+
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 9e-09
Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 33/204 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ ++VS + R + L++ GKI+ L+G +G+GKST++ ++ P G I
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG--KDDATMEEITR--AAKLS 497
+G L + ++ Q++ L + L T R L K + + + R A L
Sbjct: 62 KRNG----KLRIGYVPQKLYL---DTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLI 114
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+A P + +LSGG+ QR+ ++RA++ P +L+LDE T +D +
Sbjct: 115 DA-------PMQ----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 558 SVQEALD--RVMVGRTTVVVAHRL 579
++ + +D R + ++V+H L
Sbjct: 158 ALYDLIDQLRRELDCAVLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 9e-09
Identities = 53/184 (28%), Positives = 77/184 (41%), Gaps = 46/184 (25%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I F D SF YP P +F I +A+VG +G GKST++ LI +P SG +
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 442 ---------LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITR 492
+ +++ GLDL + P L+ + E+ R
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDL----------SSNPLLYMMRCFPGVP--------EQKLR 608
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQ----LSGGQKQRIAISRAIVKNPSILLLDEAT 548
A S ++ G +Q LSGGQK R+A ++ K P ILLLDE +
Sbjct: 609 AHLGSFGVT-------------GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPS 655
Query: 549 SALD 552
+ LD
Sbjct: 656 NHLD 659
|
Length = 718 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 41/204 (20%)
Query: 1036 FKDFNLKV-RAGKSMALVGQSGSGKSTVLSL--------------------ILRFYDPTA 1074
FK L V R G+ + LVG +G GKST L + IL + +
Sbjct: 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE 74
Query: 1075 GKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLAN 1134
+ + ++K + K V P + E + + E+++ +L
Sbjct: 75 LQNYFT--KLLEGDVKVIVK-PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL-- 129
Query: 1135 AHSFISALPEGYSTKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER 1193
V +R + QLSGG+ QRVAIA A+ ++ + DE +S LD++
Sbjct: 130 -------------RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176
Query: 1194 VVQQALQRLMR-KRTTIIVAHRLS 1216
+ ++ L ++V H L+
Sbjct: 177 NAARLIRELAEDDNYVLVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-08
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 48/202 (23%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455
D I D L++ G + L+G +G+GKST+I L+ P+SGEI L KG+ L +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA----KGIKLGY 379
Query: 456 LRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ-- 513
Q +Q L A D++ ++ + R A P+ E +
Sbjct: 380 FAQ-----HQLEFLRA-----------DESPLQHLARLA------------PQELEQKLR 411
Query: 514 ------------VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
V E + SGG+K R+ ++ + + P++LLLDE T+ LD + ++ E
Sbjct: 412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471
Query: 562 ALDRVMVGRTTVVVAHRLSTIR 583
AL + VVV+H +R
Sbjct: 472 AL--IDFEGALVVVSHDRHLLR 491
|
Length = 638 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-08
Identities = 63/253 (24%), Positives = 119/253 (47%), Gaps = 49/253 (19%)
Query: 1006 DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSL 1065
+IG+ + +E R + P D + +R G+ + + G G+G++ ++
Sbjct: 252 EIGDVI------LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQA 305
Query: 1066 ILRFYDPT-AGKVMVDG--IDIKRLNLKSLRKHIALVQQE-------PALFATSIYENIL 1115
+ Y G V ++G +DI R +++R IA+V ++ P L + +NI
Sbjct: 306 LFGAYPGKFEGNVFINGKPVDI-RNPAQAIRAGIAMVPEDRKRHGIVPIL---GVGKNIT 361
Query: 1116 YGK----------DGASEGEVIEAA----KLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161
D A+E ++I +A K+ A F LP G +LSGG
Sbjct: 362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPF---LPIG----------RLSGGN 408
Query: 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIV-AHRLSTIKN 1220
+Q+ +A+ +L NP +L+LDE T +DV ++ + + + +L ++ IIV + L+ +
Sbjct: 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLG 468
Query: 1221 -ADQISVIESGKI 1232
+D++ VI GK+
Sbjct: 469 LSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 48/217 (22%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S + + + D +P G IV ++G +G+GKST+ +I +P SG I
Sbjct: 323 IEAENLSKGFGDKL---LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQE-PALFAT-TIRENILYGKDDATM--EEITRAAKLS 497
+ G +K + V+Q AL T+ E I G D + E+ A +
Sbjct: 380 KI-GETVK----------LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVG 428
Query: 498 EAMSFISNLPERF-------ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
RF + +VG QLSGG++ R+ +++ + ++LLLDE T+
Sbjct: 429 -----------RFNFKGSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473
Query: 551 LDAESENSVQEALDRVMVGRTTVVVAH------RLST 581
LD E+ +++EAL VV++H R++T
Sbjct: 474 LDVETLRALEEALLE--FAGCAVVISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 40/224 (17%)
Query: 1010 ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
+ N G + L + + +P + +D + + G+ + + G G+ ++ ++ +
Sbjct: 241 DKENKPGEVILEVRNLTSLRQPSI---RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI 297
Query: 1070 YDPTAGKVMVDGIDIK-RLNLKSLRKHIALVQQEPALFATSIYENI-------------- 1114
+ +AG + + G I +++ ALV +E +T IY +
Sbjct: 298 REKSAGTITLHGKKINNHNANEAINHGFALVTEERR--STGIYAYLDIGFNSLISNIRNY 355
Query: 1115 ------LYGKDGASEGE-VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167
L S+ + VI++ ++ G+ T++G LSGG +Q+V I
Sbjct: 356 KNKVGLLDNSRMKSDTQWVIDSMRVKTP---------GHRTQIG----SLSGGNQQKVII 402
Query: 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIV 1211
R +L PEIL+LDE T +DV ++ + Q + L +K II+
Sbjct: 403 GRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIII 446
|
Length = 491 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-08
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTIIVAHR 1214
LSGG+ QRVAIA + ++ ++ LLDE ++ LDVE V +A++R+ +R T ++V H
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513
Query: 1215 LSTIKNADQIS 1225
+ I D IS
Sbjct: 514 IYMI---DYIS 521
|
Length = 590 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 40/217 (18%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+F+++ P+ DV I + ++P+G + + G +G GKS++ ++ + P+ G
Sbjct: 452 IKFENIPLVTPNG-DVLI-ESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYG-- 506
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY----------GKDDATMEEIT 491
G K + ++ V Q P + T+R+ I+Y G D +E+I
Sbjct: 507 --------GRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQIL 558
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQ-----LSGGQKQRIAISRAIVKNPSILLLDE 546
+L+ ++ ER + G +Q LSGG+KQRIA++R P +LDE
Sbjct: 559 DNVQLT-------HILER---EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608
Query: 547 ATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR 583
TSA+ + E + G T V+HR S +
Sbjct: 609 CTSAVSVDVEGYMYRLCRE--FGITLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 38/190 (20%)
Query: 1029 SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN 1088
SR E +F + V AG+++ + G +G+GK+T+L ++ +G++ +DG R +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 1089 LKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISAL------ 1142
+ +A + P L A + + L N H F+ L
Sbjct: 80 RS---RFMAYLGHLPGLKA--------------------DLSTLENLH-FLCGLHGRRAK 115
Query: 1143 --PEGYSTKVGERGV------QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
P VG G QLS GQK+R+A+AR L + LLDE + LD+E +
Sbjct: 116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175
Query: 1195 VQQALQRLMR 1204
V + + +R
Sbjct: 176 VNRMISAHLR 185
|
Length = 214 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 41/199 (20%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
+I G+++ ++G +G GK+T + L L+G I D + + L + + Q I
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKL-------LAGVIKPDEGSEEDLKVSYKPQYI----- 410
Query: 466 EPALFATTIRENILYGKDDATMEEITRAAKLSEAMS--FIS------NLPERFETQVGER 517
P D T+E++ R+A S S F + NL + E V E
Sbjct: 411 SP--------------DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDE- 455
Query: 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR--TTVVV 575
LSGG+ QR+AI+ A+ + + LLDE ++ LD E V + + R + T +VV
Sbjct: 456 ---LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVV 512
Query: 576 AHRLSTIRN-ADVIAVVQG 593
H + I +D + V +G
Sbjct: 513 DHDIYMIDYVSDRLIVFEG 531
|
Length = 591 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-08
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 28/194 (14%)
Query: 1023 VHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI 1082
+ F Y +P + + + + AG + L G +G+GK+T+L LI +P G+++ +
Sbjct: 7 LDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ 63
Query: 1083 DIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYGKDGASEG-EVIEAAKLANAHSFIS 1140
IK+ +L + +K + V + ++ EN LY + + E +L + I
Sbjct: 64 SIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID 122
Query: 1141 ALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQ 1200
P G LS GQK++VA+ R + ++ LLDE ALD + +L
Sbjct: 123 -YPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD-------ELSLL 164
Query: 1201 RLMRKRTTIIVAHR 1214
++ K I HR
Sbjct: 165 TIITK----IQEHR 174
|
Length = 200 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-08
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 33/201 (16%)
Query: 1006 DIGEELTNVEGTIELRGVHFS--YPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVL 1063
IGE + V + + P P + D + +R G+ + + G G+G++ ++
Sbjct: 254 TIGEVILEVR--------NLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELV 305
Query: 1064 SLILRFYDPTA--GKVMVDGIDIK-RLNLKSLRKHIALVQQE-------PALFATSIYEN 1113
+ Y P G++ +DG +K R +++ + IA+V ++ P + + +N
Sbjct: 306 QCLFGAY-PGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKN 361
Query: 1114 I-LYGKDGASEGEVI-EAAKLANAHSFISALPEGYST---KVGERGVQLSGGQKQRVAIA 1168
I L D + G I +AA+L I L ++ + +LSGG +Q+ +A
Sbjct: 362 ITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA----RLSGGNQQKAVLA 417
Query: 1169 RAVLKNPEILLLDEATSALDV 1189
+ +L NP+IL+LDE T +DV
Sbjct: 418 KCLLLNPKILILDEPTRGIDV 438
|
Length = 506 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 25/228 (10%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI--ERFYEPLSGEILLDGNNIKG 450
S D AI L++ G++ A++G +GSGKST+ + + YE G + G ++
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 451 LD------------LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSE 498
L ++ + G+ NQ F T + + ++ + E
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQ---FFLQTALNAVRSYRGQEPLDRFDFQDLMEE 126
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
++ + +PE T+ G SGG+K+R I + V P + +LDE+ S LD ++
Sbjct: 127 KIALL-KMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKI 183
Query: 559 VQEALDRVMVG-RTTVVVAHR---LSTIRNADVIAVVQGRKIVKTGSH 602
V + ++ + G R+ ++V H L I+ V + QGR IVK+G
Sbjct: 184 VADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGR-IVKSGDF 230
|
Length = 248 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-08
Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 16/209 (7%)
Query: 1040 NLKVRAGKSMALVGQSGSGKST---VLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096
+L + AG S A VG +GSGKS L+ L +G+ I RL+ + L+K
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQK-- 77
Query: 1097 ALVQQEPALFATSIYENILYGKD--GASEGEVIEAAKLANAHSFISALPEGYSTKVGERG 1154
LV E + + + + G+D G + E+I+ A A G + + R
Sbjct: 78 -LVSDE---WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRF 133
Query: 1155 VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTII-VAH 1213
LS G+ ++ + +A++ P++L+LDE LDV S + + + L L + T++ V +
Sbjct: 134 KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLN 193
Query: 1214 RLSTIKN-ADQISVIESGKIIEQGTHSSL 1241
R I + V+ + E G +
Sbjct: 194 RFDEIPDFVQFAGVLADCTLAETGEREEI 222
|
Length = 490 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-08
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 26/195 (13%)
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR 1093
V+ + + +V +G ++ + G +G GKS++ ++ + P G + K +
Sbjct: 466 VLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYGGRLT----------KPAK 514
Query: 1094 KHIALVQQEPALFATSIYENILY-------GKDGASEGEVIEAAKLANAHSFISALPEGY 1146
+ V Q P + ++ + I+Y + G S+ ++ + + EG
Sbjct: 515 GKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER--EGG 572
Query: 1147 STKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR 1206
+ V + LSGG+KQR+A+AR P+ +LDE TSA+ V+ V+ + RL R+
Sbjct: 573 WSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD----VEGYMYRLCREF 628
Query: 1207 --TTIIVAHRLSTIK 1219
T V+HR S K
Sbjct: 629 GITLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 9e-08
Identities = 52/231 (22%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIK-RLNLKSLRKH 1095
+D + V G+ + G GSG++ +++ + G++ ++G DI R L +++K
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 1096 IALV---QQEPALFAT-SIYENILYG---KDGASEGEV-----IEAAKLANAHSFISALP 1143
+A + +++ F SI +N+ KDG +G + ++ + A + AL
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 1144 EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM 1203
V + +LSGG +Q+V I++ + PE+++ DE T +DV + + + ++M
Sbjct: 400 ---CHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA----KAEIYKVM 452
Query: 1204 RK-----RTTIIVAHRLSTIKNA-DQISVIESGKIIEQGTHSSLVENEDGA 1248
R+ + ++V+ L I D+I+V G++ + ++ N D
Sbjct: 453 RQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL------TQILTNRDDM 497
|
Length = 510 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
Query: 386 DVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKS-TVISLIERFYEP--LSGEIL 442
V+F P DV + + AG+ + +VG SGSGKS T +L+ + G
Sbjct: 19 RVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77
Query: 443 LDGNNIKGL---DLKWLR-QQIGLVNQEPALFATT------IRENIL--------YGKDD 484
+G I L +L LR +QI ++ Q+P T+ + E ++ K +
Sbjct: 78 FNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAE 134
Query: 485 ATMEEITR---AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541
A EE R A K+ EA + P F SGG +QR+ I+ A++ P +
Sbjct: 135 A-FEESVRMLDAVKMPEARKRMKMYPHEF-----------SGGMRQRVMIAMALLCRPKL 182
Query: 542 LLLDEATSALD 552
L+ DE T+ALD
Sbjct: 183 LIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 409 AGKIVALVGGSGSGKST---VISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
G++V ++G GSG ST ++ + G+I +G K K+ + I V++
Sbjct: 32 PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEII-YVSE 90
Query: 466 EPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524
E F T T+RE T++ A + + F+ RGI SGG
Sbjct: 91 EDVHFPTLTVRE---------TLD---FALRC-KGNEFV-------------RGI--SGG 122
Query: 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTV 573
+++R++I+ A+V S+L D +T LD+ + AL+ + RT
Sbjct: 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSST------ALEILKCIRTMA 165
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 1145 GYSTKVGERGVQLSGGQKQRVAIARAVLK---NPEILLLDEATSALDVESERVVQQALQR 1201
GY K+G+ LSGG+ QR+ +A+ + K + +LDE T+ L + + + LQR
Sbjct: 159 GY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR 217
Query: 1202 LMRKRTTIIVA-HRLSTIKNADQISVIE--------SGKIIEQGT 1237
L+ K T++V H L IK AD I I+ G+++ GT
Sbjct: 218 LVDKGNTVVVIEHNLDVIKCADWI--IDLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 1031 PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVL----SLILRFYDPTAGKVMVDGI---D 1083
I K + ++ G+ ++G+ GSG ST+L S F+ G + DGI +
Sbjct: 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131
Query: 1084 IKRLNLKSLRKHIALVQQEPALFAT-SIYENILYGK---------DGASEGEVIEAAKLA 1133
IK K R + + F ++ E + + DG S E A +A
Sbjct: 132 IK----KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEY--AKHIA 185
Query: 1134 NAHSFISALPEGYSTKVGE---RGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
+ + L +TKVG RGV SGG+++RV+IA A L +I D AT LD
Sbjct: 186 DVYMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSA 243
Query: 1191 SERVVQQALQRLMR--KRTTIIVAHRLS--TIKNADQISVIESGKIIEQG 1236
+ +AL+ T ++ ++ S + D++ V+ G I G
Sbjct: 244 TALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 52/186 (27%), Positives = 96/186 (51%), Gaps = 22/186 (11%)
Query: 410 GKIVALVGGSGSGKSTVIS-LIERFYEPLSGEILLDGN---NIKGLDLKWLRQQIGLVNQ 465
G + AL+G SG+GK+T+++ L ER ++ ++ G+ N + LD + R IG V Q
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAER----VTTGVITGGDRLVNGRPLDSSFQR-SIGYVQQ 843
Query: 466 EPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ------VGERG 518
+ T T+RE++ + + +++ SE M ++ + + E + VG G
Sbjct: 844 QDLHLPTSTVRESLRFSAYLRQPKSVSK----SEKMEYVEEVIKLLEMESYADAVVGVPG 899
Query: 519 IQLSGGQKQRIAISRAIVKNPSILL-LDEATSALDAESENSVQEALDR-VMVGRTTVVVA 576
L+ Q++R+ I +V P +LL LDE TS LD+++ S+ + + + G+ +
Sbjct: 900 EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTI 959
Query: 577 HRLSTI 582
H+ S I
Sbjct: 960 HQPSAI 965
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 2e-07
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S Y + + L I G + LVG +G+GKST++ LI EP G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 442 LLDGN 446
Sbjct: 58 TWGST 62
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 51/215 (23%), Positives = 102/215 (47%), Gaps = 30/215 (13%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095
F++ +L+VRAG+ + L G G+G++ + + G++M++G +I L+ R
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ-RLA 337
Query: 1096 IALV-----QQEPALFA-TSIYENI---LYGKDGASEGEVIEAAKLANAHSFISALPEGY 1146
LV +Q L+ + N+ + + G E A L E Y
Sbjct: 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVL-----------ERY 386
Query: 1147 STKVG------ERGVQ-LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL 1199
+ E+ + LSGG +Q+V IA+ + +P++L++DE T +DV + + Q +
Sbjct: 387 RRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLI 446
Query: 1200 QRLMRKRTTII-VAHRLSTI-KNADQISVIESGKI 1232
+ + + ++ ++ L I + AD++ V+ G+I
Sbjct: 447 RSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 59/226 (26%)
Query: 364 MSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGK 423
+A+ ++ L+G F+++S ++ AG+I+ L G G+G+
Sbjct: 260 RQQAAGAPVLTVEDLTGE-GFRNISL----------------EVRAGEILGLAGVVGAGR 302
Query: 424 STVISLIERFY---EPLSGEILLDGNNIKGLDLKWLRQQIGLV-----NQEPALF----- 470
+ L E Y G I+L+G I L R GLV Q L+
Sbjct: 303 T---ELAETLYGLRPARGGRIMLNGKEINALSTA-QRLARGLVYLPEDRQSSGLYLDAPL 358
Query: 471 -----ATTIRENILY---GKDDATMEEITRA--AKLSEAMSFISNLPERFETQVGERGIQ 520
A T + +++A +E RA K + A R
Sbjct: 359 AWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA-----EQAAR----------T 403
Query: 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566
LSGG +Q++ I++ + +P +L++DE T +D + N + + + +
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
|
Length = 510 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVA 576
I LSGG+ QR+AI+ A+++N + L DE ++ LD E + A+ R+ +T +VV
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 577 HRLSTIRN-ADVIAVVQG 593
H L+ + +D I V +G
Sbjct: 130 HDLAVLDYLSDRIHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 4e-07
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ------VGERGIQ-LSGGQ 525
T+RE+++Y +E+++ E M F+ + E E VG G+ LS Q
Sbjct: 969 TVRESLIYSAFLRLPKEVSK----EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEAL-DRVMVGRTTVVVAHRLS 580
++R+ I+ +V NPSI+ +DE TS LDA + V + + V GRT V H+ S
Sbjct: 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 5e-07
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 54/213 (25%)
Query: 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK- 1094
F++ ++K G L+G +G GKST + ++ +P+AG V +D L LR+
Sbjct: 17 FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD----PNERLGKLRQD 72
Query: 1095 ----------------HIAL--VQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAH 1136
H L V+QE + +Y SE + ++ A L
Sbjct: 73 QFAFEEFTVLDTVIMGHTELWEVKQE---------RDRIYALPEMSEEDGMKVADLEVKF 123
Query: 1137 SFISALPEGYS--TKVGE--RGV------------QLSGGQKQRVAIARAVLKNPEILLL 1180
A +GY+ + GE GV +++ G K RV +A+A+ NP+ILLL
Sbjct: 124 ----AEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLL 179
Query: 1181 DEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
DE T+ LD+ + R ++ L R T II++H
Sbjct: 180 DEPTNNLDINTIRWLEDVLNE--RNSTMIIISH 210
|
Length = 530 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 6e-07
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 28/128 (21%)
Query: 1135 AHSFISALPE-------------GYSTKVGERGVQLSGGQKQRVAIARAVLK---NPEIL 1178
A+ F A+P GY ++G+ LSGG+ QR+ +A+ + K +
Sbjct: 796 AYEFFEAVPSISRKLQTLCDVGLGY-IRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLY 854
Query: 1179 LLDEATSALDVESERVVQQALQRLMRKRTTIIV-AHRLSTIKNADQISVIE--------S 1229
+LDE T+ L + + + + LQRL+ K T++V H L IK AD I I+
Sbjct: 855 ILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTADYI--IDLGPEGGDGG 912
Query: 1230 GKIIEQGT 1237
G ++ GT
Sbjct: 913 GTVVASGT 920
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 40/217 (18%)
Query: 400 FDKFCLDIPA-GKIVALVGGSGSGKSTVISLIE--------RFYEPLSGEILLD---GN- 446
F L +P G+++ LVG +G GKST + ++ +F +P + +LD G+
Sbjct: 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE 74
Query: 447 ------NIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAM 500
+ D+K + + V+ P + E +L KD+ +
Sbjct: 75 LQNYFTKLLEGDVKVI-VKPQYVDLIPKAVKGKVGE-LLKKKDERGKLDE---------- 122
Query: 501 SFISNLPERFE-TQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
L ++ E V +R I QLSGG+ QR+AI+ A+ ++ DE +S LD + +
Sbjct: 123 -----LVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLN 177
Query: 559 VQEAL-DRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG 593
+ + +VV H L+ + +D I + G
Sbjct: 178 AARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 8e-07
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 521 LSGGQKQRIAISRAIVK---NPSILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVA 576
LSGG+ QR+ +++ + K ++ +LDE T+ L + + E L R V G T +V+
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 577 HRLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
H L I+ AD I G +IV +G+ EE+ S
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKAS 923
|
Length = 935 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 58/226 (25%)
Query: 400 FDKFCLDIP-AGKIVALVGGSGSGKSTVISLIERFYEPLSGEI---LLDGNNIKGLD--L 453
F + L P GK+V ++G +G GKST + + L+GE+ L + D +
Sbjct: 89 FKLYRLPTPRPGKVVGILGPNGIGKSTALKI-------LAGELKPNLGRYEDPPSWDEVI 141
Query: 454 KWLR-------------------QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494
K R + V+ P + + E +L D+
Sbjct: 142 KRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGE-LLKKVDER--------G 192
Query: 495 KLSEAMSFISNLPERFE-TQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
K E + ER V +R + +LSGG+ QR+AI+ A++++ + DE +S LD
Sbjct: 193 KFDEVV-------ERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
Query: 553 AESE----NSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG 593
++E + G+ +VV H L+ + +D + ++ G
Sbjct: 246 IRQRLNAARVIRELAED---GKYVIVVEHDLAVLDYLSDFVHILYG 288
|
Length = 591 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 24/171 (14%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
S P V D L + I AL+G +G+GKST++ + Y+ SG IL G I
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 453 LK-WLRQQIGLVNQEPALF-ATTIRENILYGK--------DDATMEEITRA--AKLSEAM 500
K L I +V+QE L ++ +N+ G+ D M T+A +L
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELD--- 123
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
I P + LS Q Q I I++A N I+++DE TS+L
Sbjct: 124 --IDIDPR-------AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
|
Length = 491 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 62/186 (33%), Positives = 87/186 (46%), Gaps = 35/186 (18%)
Query: 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD-GNNIKGLDLK 454
D + D L I + V LVG +G+GKST++ + L+GE+LLD G I DL
Sbjct: 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKI-------LNGEVLLDDGRIIYEQDLI 67
Query: 455 WLR-QQIGLVNQEPALF---ATTIRENILYGKD----------DATMEEITRAAKLSEAM 500
R QQ N E ++ A I E Y K D + + + AKL E +
Sbjct: 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127
Query: 501 SFISNLPERFETQVGERGIQ-----------LSGGQKQRIAISRAIVKNPSILLLDEATS 549
NL + E ++ E Q LSGG ++ A+ RA+V NP +LLLDE T+
Sbjct: 128 D-HHNL-WQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTN 185
Query: 550 ALDAES 555
LD E+
Sbjct: 186 HLDIET 191
|
Length = 635 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-06
Identities = 58/239 (24%), Positives = 113/239 (47%), Gaps = 22/239 (9%)
Query: 348 AKAAAYPIFEMIERDTMSKASSKT---GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFC 404
A+ A PIF+ E D +++ + G K D L + +++ Y A+ D+ C
Sbjct: 1907 AEPAKEPIFD--EDDDVAEERQRIISGGNKTDILRLN----ELTKVYSGTSSPAV-DRLC 1959
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ + G+ L+G +G+GK+T ++ SG+ + G +I ++ + Q +G
Sbjct: 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL-TNISDVHQNMGYCP 2018
Query: 465 QEPAL-FATTIRENI-LYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521
Q A+ T RE++ LY + EEI + A S +S +R
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGT-------Y 2071
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL 579
SGG K++++ + A++ P ++LLDE T+ +D ++ + + ++ GR V+ +H +
Sbjct: 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 2e-06
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 10/176 (5%)
Query: 1043 VRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQE 1102
VR G+ L+G +G+GK+T ++ T+G V G I N+ + +++ Q
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI-LTNISDVHQNMGYCPQF 2020
Query: 1103 PAL--FATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160
A+ T LY + E IE K+AN I +L G S SGG
Sbjct: 2021 DAIDDLLTGREHLYLYARLRGVPAEEIE--KVANWS--IQSL--GLSLYADRLAGTYSGG 2074
Query: 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK-RTTIIVAHRL 1215
K++++ A A++ P ++LLDE T+ +D ++ R++ + ++R+ R ++ +H +
Sbjct: 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 63/280 (22%), Positives = 115/280 (41%), Gaps = 61/280 (21%)
Query: 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456
V D+ + + G+I LVG SGSGKS + I + + + D +DL L
Sbjct: 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRL 78
Query: 457 --RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER-FETQ 513
R++ LV ++ I + D + E + R I N+P ++ +
Sbjct: 79 SPRERRKLVGHNVSM----IFQEPQSCLDPS--ERVGR--------QLIQNIPAWTYKGR 124
Query: 514 VGER---------------GI------------QLSGGQKQRIAISRAIVKNPSILLLDE 546
+R GI +L+ G+ Q++ I+ A+ P +L+ DE
Sbjct: 125 WWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADE 184
Query: 547 ATSALDAESENSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603
T++++ ++ + L R+ T ++++H L I AD I V+ + V++ E
Sbjct: 185 PTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSE 244
Query: 604 ELISNPNSAY-AALVQLQEAASQQSNSSQCPNMGRPLSIK 642
EL++ P+ Y AL++ P+ G L K
Sbjct: 245 ELVTMPHHPYTQALIR------------AIPDFGSALPHK 272
|
Length = 330 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-06
Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 58/221 (26%)
Query: 366 KASSK--------TGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVG 417
K SS+ +KL + + +E ++++ + + P +F L + AG+ +A++G
Sbjct: 298 KPSSRQNPFIRFEQDKKLHRNA--LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIG 352
Query: 418 GSGSGKSTVISLIERFYEPLSGEILLDGN-NI------------KGLDL-KWLRQQIGLV 463
+G GK+T++ + EP SG + N NI L L W+ Q
Sbjct: 353 ENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEG 412
Query: 464 NQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523
+ E A+ T R +L+ +DD I ++ K+ LSG
Sbjct: 413 DDEQAVRGTLGR--LLFSQDD-----IKKSVKV------------------------LSG 441
Query: 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD 564
G+K R+ + +++ P++L++DE T+ +D ES S+ AL+
Sbjct: 442 GEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALE 482
|
Length = 530 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN-NIKGLDLKWLRQQIGLVNQE-P 467
G ++ LVG +GSGKST+ ++I P G++ +G ++ + Q G+ N E
Sbjct: 50 GDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFK 109
Query: 468 ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527
L R+ I A +I ++L E FI +++ S G +
Sbjct: 110 MLCMGFKRKEI-----KAMTPKIIEFSELGE---FIYQPVKKY-----------SSGMRA 150
Query: 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM----VGRTTVVVAHRLSTIR 583
++ S I NP IL++DEA S D + Q+ LD++ +T V+H L +R
Sbjct: 151 KLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR 207
Query: 584 N-ADVIAVVQGRKIVKTGSHEELI 606
IA ++G K+ G ++++
Sbjct: 208 QFCTKIAWIEGGKLKDYGELDDVL 231
|
Length = 264 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-06
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 1157 LSGGQKQRVAIARAVLK---NPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIV-A 1212
LSGG+ QRV +A+ + K + +LDE T+ L + + + + L RL+ K T+IV
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 1213 HRLSTIKNADQISVIE--------SGKIIEQGTHSSLVENED---GAYFKLI 1253
H L IK AD I I+ G+I+ GT + + + G Y K
Sbjct: 883 HNLDVIKTADWI--IDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKKY 932
|
Length = 935 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-06
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 43/204 (21%)
Query: 1046 GKSMALVGQSGSGKSTVLSL--------------ILRFY------DPTAGKVMVDGIDIK 1085
G+ LVG++G+GK+T L IL D TA + +++ DI+
Sbjct: 203 GRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNT-DIE 261
Query: 1086 RLNLKSLRKHIALVQQ------EPALFATSIYENILYGKDGASEG--------EVIEA-A 1130
R L L + LV Q E KD S+ E+I+A
Sbjct: 262 RTQL--LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYT 319
Query: 1131 KLANAHSFISALPEGYSTKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
A A S ++ L ++ ++ + SGG + R+A+ARA+ P++LLLDE T+ LD+
Sbjct: 320 AEARAASILAGL--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377
Query: 1190 ESERVVQQALQRLMRKRTTIIVAH 1213
+ ++ L L +T I+V+H
Sbjct: 378 HAVLWLETYL--LKWPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-06
Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 51/222 (22%)
Query: 400 FDKFCLDIP-AGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL---------------L 443
F + L IP GK+ ++G +G GK+T + + LSGE++ L
Sbjct: 88 FKLYGLPIPKEGKVTGILGPNGIGKTTAVKI-------LSGELIPNLGDYEEEPSWDEVL 140
Query: 444 D-------GNNIKGLDLKWLR--QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494
N K L ++ + V+ P +F +RE +L D+
Sbjct: 141 KRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE-LLKKVDER--------G 191
Query: 495 KLSEAMSFISNLPERFE-TQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
KL E + ER + +R I +LSGG+ QR+AI+ A++++ DE TS LD
Sbjct: 192 KLDE-------VVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
Query: 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG 593
+V + + G+ +VV H L+ + AD + + G
Sbjct: 245 IRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYG 286
|
Length = 590 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 8e-06
Identities = 73/291 (25%), Positives = 124/291 (42%), Gaps = 25/291 (8%)
Query: 924 GIFYGISQFFIFSSYGLALWYGSVLMGK-ELASFKSVMKSFMVLIVTALAMGETLALVPD 982
GI G + FF F Y L + K E+ F+ GET A +
Sbjct: 673 GIIIGFTVFFFFV-YILLTEFNKGAKQKGEILVFRRGSLKRAK------KAGETSASNKN 725
Query: 983 LLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEV-VIFKDFNL 1041
++ ++ D V + E + E R + + + E VI + +
Sbjct: 726 DIE-AGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDG 784
Query: 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDP---TAGKVMVDGIDIKRLNLKSLRKHIAL 1098
V+ G AL+G SG+GK+T+L+++ T G +V+G + S ++ I
Sbjct: 785 WVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGY 840
Query: 1099 VQQEPALFATS-IYENILYGKDGASEGEVIEAAKLANAHSFISALP-EGYSTK-VGERGV 1155
VQQ+ TS + E++ + V ++ K+ I L E Y+ VG G
Sbjct: 841 VQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE 900
Query: 1156 QLSGGQKQRVAIARAVLKNPEILL-LDEATSALDVESERVVQQALQRLMRK 1205
L+ Q++R+ I ++ P++LL LDE TS LD ++ ++ +LMRK
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT----AWSICKLMRK 947
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-06
Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 20/188 (10%)
Query: 379 SGHI--EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP 436
SG I E ++V++ + F + G +AL+G +G GK+T++ L+ +
Sbjct: 315 SGKIVFEMENVNY---QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA 371
Query: 437 LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKL 496
SG I G L++ + Q ++ E T+ +N+ GK + + R L
Sbjct: 372 DSGRIHC-GTK---LEVAYFDQHRAELDPE-----KTVMDNLAEGKQEVMVNGRPRHV-L 421
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
F+ + P+R T V LSGG++ R+ ++R +K ++L+LDE T+ LD E+
Sbjct: 422 GYLQDFLFH-PKRAMTPVK----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476
Query: 557 NSVQEALD 564
++E LD
Sbjct: 477 ELLEELLD 484
|
Length = 635 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-06
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 40/226 (17%)
Query: 1046 GKSMALVGQSGSGKSTVLSLILRF----YDPTAGKVMVDGIDIKRLNLKSLRK----HIA 1097
G+ LVG+SGSGKS + I + TA ++ D ID+ RL+ + RK +++
Sbjct: 33 GEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVS 92
Query: 1098 LVQQEPALF---ATSIYENILYGKDGAS-EG--------------EVIEAAKLANAHSFI 1139
++ QEP + + ++ G + +G E++ + + +
Sbjct: 93 MIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM 152
Query: 1140 SALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL 1199
+ P Y GE QK +AIA A P +L+ DE T+A++ ++ + + L
Sbjct: 153 RSFP--YELTEGE-------CQKVMIAIALA--NQPRLLIADEPTNAMEPTTQAQIFRLL 201
Query: 1200 QRLMRKRTTII--VAHRLSTI-KNADQISVIESGKIIEQGTHSSLV 1242
RL + T I ++H L + + AD+I+V+ G+ +E LV
Sbjct: 202 TRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247
|
Length = 330 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 58/250 (23%), Positives = 111/250 (44%), Gaps = 49/250 (19%)
Query: 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVL 1063
+G++ L ++G G+ + + VRAG+ + L G G+G+S ++
Sbjct: 253 LGEVRLRLDGLKG----PGLR------------EPISFSVRAGEIVGLFGLVGAGRSELM 296
Query: 1064 SLILRFYDPTAGKVMVDGIDIKRLNLKS----LRKHIALV----QQEPALFATSIYENIL 1115
L+ TAG+V +DG K ++++S +R I L + E + S+ +NI
Sbjct: 297 KLLYGATRRTAGQVYLDG---KPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNIN 353
Query: 1116 YG--KDGASEGEVIEAAKLA-NAHSFISALPEGYSTKVGERG-----VQLSGGQKQRVAI 1167
+ G +I A NA FI +L + + LSGG +Q+ +
Sbjct: 354 ISARRHHLRAGCLINNRWEAENADRFIRSL------NIKTPSREQLIMNLSGGNQQKAIL 407
Query: 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLST-----IKNAD 1222
R + ++ +++LLDE T +DV ++ + + L + ++ S+ + AD
Sbjct: 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFV---SSDLPEVLGVAD 464
Query: 1223 QISVIESGKI 1232
+I V+ G+I
Sbjct: 465 RIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 56/178 (31%), Positives = 80/178 (44%), Gaps = 52/178 (29%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
I G+ V LVG +G GKST+++L L EI DG + W Q+ VNQE
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLAL-------LKNEISADGGSYT-FPGNW---QLAWVNQE 72
Query: 467 -PALFATTI-------RE--------------------NILYGKDDA----TMEEITRAA 494
PAL + RE ++GK DA T+ +RAA
Sbjct: 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIR--SRAA 130
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
L + F SN E+ E V + SGG + R+ +++A++ +LLLDE T+ LD
Sbjct: 131 SLLHGLGF-SN--EQLERPVSD----FSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLS 1216
LSGG ++ A+ RA++ NP++LLLDE T+ LD+E+ ++ L + + I ++H S
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL--KTFQGSIIFISHDRS 214
Query: 1217 TIKN-ADQISVIESGKII 1233
I+N A +I ++ GK++
Sbjct: 215 FIRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 400 FDKFCLDIPAGKI-----VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454
F L++ G+I + +VG +G GK+T L+ +P GE+ + L +
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKIS 403
Query: 455 WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFIS-------NLP 507
+ Q I D T+E++ R+ S+ L
Sbjct: 404 YKPQYIK-------------------PDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444
Query: 508 ERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM 567
+ V + LSGG+ QR+AI+ + ++ + LLDE ++ LD E +V +A+ R+
Sbjct: 445 RLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500
Query: 568 VGR--TTVVVAHRLSTI 582
R T +VV H + I
Sbjct: 501 EEREATALVVDHDIYMI 517
|
Length = 590 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-05
Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 38/222 (17%)
Query: 987 NQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAG 1046
++ + ++ + ++ G L + IE + S+ R ++ D + + G
Sbjct: 296 EELLSEEYQKRNETNEIFIPPGPRLGDK--VIEAENLSKSFGDR---LLIDDLSFSLPPG 350
Query: 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALV-QQEPAL 1105
+ ++G +G+GKST+ +I P +G + + G +K +A V Q AL
Sbjct: 351 GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVK----------LAYVDQSRDAL 399
Query: 1106 FAT-SIYENILYGKDGASEG-EVIEAAKLA-NAHSFISALPEGYS-----TKVGERGVQL 1157
+++E I S G ++I+ + +++ + KVG L
Sbjct: 400 DPNKTVWEEI-------SGGLDIIKVGNREIPSRAYVGRF--NFKGGDQQKKVG----VL 446
Query: 1158 SGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQAL 1199
SGG++ R+ +A+ + + +LLLDE T+ LDVE+ R +++AL
Sbjct: 447 SGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL 488
|
Length = 556 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 22/168 (13%)
Query: 393 SRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD 452
SR + +F + AG+ + + G +G+GK+T++ ++ SG+I +DG D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 453 LKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAKLSEAMSFISNL 506
+ + + P L A + EN+ L+G+ RA ++ + I L
Sbjct: 80 RS---RFMAYLGHLPGLKADLSTLENLHFLCGLHGR---------RAKQMPGSALAIVGL 127
Query: 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+T V QLS GQK+R+A++R + + LLDE + LD E
Sbjct: 128 AGYEDTLVR----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-05
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 498 EAMSFISNLP---ERFET---------QVGERGIQLSGGQKQRIAISRAIVK---NPSIL 542
EA F +P + +T ++G+ LSGG+ QRI +++ + K ++
Sbjct: 795 EAYEFFEAVPSISRKLQTLCDVGLGYIRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLY 854
Query: 543 LLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNADVI------AVVQGRK 595
+LDE T+ L + + E L R V G T VV+ H L I+ AD I G
Sbjct: 855 ILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGT 914
Query: 596 IVKTGSHEELI 606
+V +G+ EE+
Sbjct: 915 VVASGTPEEVA 925
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPE--ILLLDEATSALDVESERV 1194
F+ + GY T +G++ LSGG+ QRV +A + P + +LDE ++ L +
Sbjct: 69 QFLIDVGLGYLT-LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQ 127
Query: 1195 VQQALQRLMRKRTTIIVA-HRLSTIKNADQI------SVIESGKIIEQG 1236
+ + ++ L+ T+I+ H L + +AD I S GK++ G
Sbjct: 128 LLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 3e-05
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 62/205 (30%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE +++S + R + D +P G IV ++G +G+GKST+ +I +P SG I
Sbjct: 325 IEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM-EEITRAAKLSEAM 500
+ G +K + V+Q R+ + + T+ EEI S +
Sbjct: 382 KI-GETVK----------LAYVDQS--------RDAL---DPNKTVWEEI------SGGL 413
Query: 501 SFISNLPERFETQVGERGI---------------------QLSGGQKQRIAISRAIVKNP 539
I +VG R I LSGG++ R+ +++ + +
Sbjct: 414 DII---------KVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGG 464
Query: 540 SILLLDEATSALDAESENSVQEALD 564
++LLLDE T+ LD E+ +++EAL
Sbjct: 465 NVLLLDEPTNDLDVETLRALEEALL 489
|
Length = 556 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 15/129 (11%)
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVV--VAH 577
+L+ G+ Q++ I+ A+ P +L+ DE T+A++ ++ + L R+ T + ++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 578 RLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMG 636
L + AD I V+ + V+T +EL++ P+ Y Q+ P+ G
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYT-----------QALIRAIPDFG 266
Query: 637 RPLSIKFSR 645
+ K SR
Sbjct: 267 SAMPHK-SR 274
|
Length = 330 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTII-VAHRL 1215
LSGG +Q+VAIAR ++ P++L+LDE T +DV +++ + Q + + + +II V+ +
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM 455
Query: 1216 STIKN-ADQISVIESGKI-----IEQGTHSSL 1241
+ +D+I V+ G+I EQ T L
Sbjct: 456 PEVLGMSDRILVMHEGRISGEFTREQATQEKL 487
|
Length = 501 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+ + + + P +FK+ NL + AG+ +A++G++G GK+T+L ++ +P +G V
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-05
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 521 LSGGQKQRIAISRAIVKNPSILL--LDEATSAL---DAESENSVQEALDRVMVGRTTVVV 575
LSGG+ QRI ++ I + +L LDE + L D E + L + G T +VV
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDL--GNTVIVV 539
Query: 576 AHRLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
H TIR AD I A G +IV G+ EEL++NP S
Sbjct: 540 EHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPES 581
|
Length = 935 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 41/210 (19%)
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI-----ERFYE 435
I + Y RP I + G+ +VG +G+GKST++SLI + +
Sbjct: 260 RIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN 316
Query: 436 PL--------SGEILLDGNNIKGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDD 484
L SGE + D IK + IG V+ L +T++R IL G D
Sbjct: 317 DLTLFGRRRGSGETIWD---IK--------KHIGYVSSSLHLDYRVSTSVRNVILSGFFD 365
Query: 485 ATMEEITRA---AKLSEAMSFISNLPERFETQVGERGIQ-LSGGQKQRIA-ISRAIVKNP 539
+ I +A + A ++ L + + + LS GQ QR+A I RA+VK+P
Sbjct: 366 SI--GIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHP 420
Query: 540 SILLLDEATSALDAESENSVQEALDRVMVG 569
++L+LDE LD + V+ +D V++
Sbjct: 421 TLLILDEPLQGLDPLNRQLVRRFVD-VLIS 449
|
Length = 490 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-05
Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 58/233 (24%)
Query: 1043 VRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQE 1102
+ G+ + LVG++G GKST+L+L+ ++ DG L A V QE
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALL-------KNEISADGGSYTFPGNWQL----AWVNQE 72
Query: 1103 -PALFATSIYENILYGKDGASEGEVIEAA------------------KL---------AN 1134
PAL ++ Y DG E +EA KL +
Sbjct: 73 TPALPQPALE----YVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSR 128
Query: 1135 AHSFISALPEGYSTKVGERGVQ-LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER 1193
A S + L G+S + ER V SGG + R+ +A+A++ ++LLLDE T+ LD+++
Sbjct: 129 AASLLHGL--GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA-- 184
Query: 1194 VVQQALQRLMRKR--TTIIVAHR---LSTIKNADQISVIESGKIIE-QGTHSS 1240
V+ L++ ++ T I+++H L I D+I IE + E G +SS
Sbjct: 185 VIW--LEKWLKSYQGTLILISHDRDFLDPI--VDKIIHIEQQSLFEYTGNYSS 233
|
Length = 638 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 47/185 (25%)
Query: 407 IPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQE 466
IP +V + G SGSGKST+++ E Y SG+ L I L K+ R ++ ++Q
Sbjct: 18 IPLNVLVVVTGVSGSGKSTLVN--EGLYA--SGKARL----ISFLP-KFSRNKLIFIDQL 68
Query: 467 PALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526
L I + Y L + +S LSGG+
Sbjct: 69 QFL----IDVGLGY-------------LTLGQKLS------------------TLSGGEL 93
Query: 527 QRIAISRAIVKNP--SILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIR 583
QR+ ++ + P ++ +LDE ++ L + N + E + + +G T +++ H L +
Sbjct: 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153
Query: 584 NADVI 588
+AD I
Sbjct: 154 SADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 65/224 (29%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG---------------- 1081
D +LK G + LVG +GSGKST+ ++I PT GKV +G
Sbjct: 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLT 101
Query: 1082 ----IDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHS 1137
I+ K L + RK I P ++IE ++L
Sbjct: 102 GIENIEFKMLCMGFKRKEIK--AMTP---------------------KIIEFSELGE--- 135
Query: 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
FI + YS+ G + ++ + + NP+IL++DE AL V + Q+
Sbjct: 136 FIYQPVKKYSS-----------GMRAKLGFSINITVNPDILVIDE---ALSVGDQTFAQK 181
Query: 1198 ALQRLM----RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236
L ++ + +T V+H L ++ +I+ IE GK+ + G
Sbjct: 182 CLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225
|
Length = 264 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 484 DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILL 543
DA E RAA + +SF + + T+ SGG + RIA++RA+ P +LL
Sbjct: 316 DAYTAE-ARAASILAGLSFTPEMQVK-ATK------TFSGGWRMRIALARALFIEPDLLL 367
Query: 544 LDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADV--IAVVQGRKIV 597
LDE T+ LD + ++ L + +T +VV+H + N V I + G+K+V
Sbjct: 368 LDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSHAREFL-NTVVTDILHLHGQKLV 420
|
Length = 718 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 23/195 (11%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
+FD + I + G +G GKS+++ +I +P SG I NI
Sbjct: 16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI---------- 64
Query: 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQ--VGE 516
N + T I N+ + E + +++ + + F+ + E
Sbjct: 65 -----NNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE 119
Query: 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM---VGRTTV 573
+ LS G ++ +AI+R I + LLDE + L E+ + + + VM G +
Sbjct: 120 KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLI--VMKANSGGIVL 177
Query: 574 VVAHRLSTIRNADVI 588
+ +H S+I++A ++
Sbjct: 178 LSSHLESSIKSAQIL 192
|
Length = 195 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 30/178 (16%)
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK-HIALVQQEPAL-FATSI 1110
G +G GKS++L +I P++G + K N+ ++ K + + L ++
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIY-----YKNCNINNIAKPYCTYIGHNLGLKLEMTV 87
Query: 1111 YENILYGKDGASEGEVIEAA----KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166
+EN+ + + + E + AA KL H + E+ LS G ++ VA
Sbjct: 88 FENLKFWSEIYNSAETLYAAIHYFKL---HDLLD-----------EKCYSLSSGMQKIVA 133
Query: 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIV---AHRLSTIKNA 1221
IAR + ++ LLDE + L E+ ++ + +M+ + IV +H S+IK+A
Sbjct: 134 IARLIACQSDLWLLDEVETNLSKENRDLLNNLI--VMKANSGGIVLLSSHLESSIKSA 189
|
Length = 195 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 30/186 (16%)
Query: 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQ 465
++P G+IV ++G +GSGKST+ +LI P G + +IKG + GL Q
Sbjct: 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKG-SAALIAISSGLNGQ 99
Query: 466 EPALFATTIRENI-----LYGKDDATMEEIT-RAAKLSEAMSFISNLPERFETQVGERGI 519
+ ENI + G ++EI + ++ FI P +
Sbjct: 100 LTGI------ENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFI-YQPVK---------- 142
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHR 578
S G K R+ + ++ NP IL++DEA S D + ++ G+T ++H
Sbjct: 143 TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS 202
Query: 579 LSTIRN 584
LS +++
Sbjct: 203 LSQVKS 208
|
Length = 549 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 48/245 (19%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS 1091
+ +I L + G + L+G++G+GKST++ L+ P +G++
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-------------G 370
Query: 1092 LRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLA------NAHSFISALPEG 1145
L K I L FA E + A E + A+LA ++ G
Sbjct: 371 LAKGIKL-----GYFAQHQLEFLR-----ADESPLQHLARLAPQELEQKLRDYLGGF--G 418
Query: 1146 YS-TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR 1204
+ KV E + SGG+K R+ +A V + P +LLLDE T+ LD++ + + +AL
Sbjct: 419 FQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-- 476
Query: 1205 KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDG---AYFKLINLQQRQD 1260
+ ++V+H +++ D + ++ GK VE DG Y + ++ Q+Q+
Sbjct: 477 EGALVVVSHDRHLLRSTTDDLYLVHDGK----------VEPFDGDLEDYQQWLSDVQKQE 526
Query: 1261 PQHSQ 1265
Q +
Sbjct: 527 NQTDE 531
|
Length = 638 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGE---RGIQLSGGQKQRIAISRAIVKNPSILLLD 545
A +++ L T+VG RG+ SGG+++R++I+ A + I D
Sbjct: 177 REEYAKHIADVYMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWD 234
Query: 546 EATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582
AT LD+ + AL+ + +T+ + +
Sbjct: 235 NATRGLDSAT------ALEFIRALKTSANILDTTPLV 265
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
E+ V++ + + KDF+ +V+ G +AL+G +G GK+T+L L+L +G++
Sbjct: 321 EMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
|
Length = 635 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 37/189 (19%), Positives = 79/189 (41%), Gaps = 29/189 (15%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-PLSGE 440
+E ++++ P D + G+I+ + G G+G++ ++ + Y G
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 441 ILLDGN--NIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSE 498
+ ++G +I+ + +R I +V ++ R I+ + IT + +
Sbjct: 318 VFINGKPVDIRNP-AQAIRAGIAMVPEDRK------RHGIV--PILGVGKNITLSV--LK 366
Query: 499 AMSFISNLPERFETQVGERGIQ---------------LSGGQKQRIAISRAIVKNPSILL 543
+ F + E Q+ IQ LSGG +Q+ +++ ++ NP +L+
Sbjct: 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLI 426
Query: 544 LDEATSALD 552
LDE T +D
Sbjct: 427 LDEPTRGVD 435
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 60/190 (31%)
Query: 1050 ALVGQSGSGKSTVL-------------SLILRFYDPT-AGKVMVDGIDIKRLNLKSLRKH 1095
+VGQ+G+GK+T++ + +DP + V +K L ++
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRA-QVK-LAFENANGK 83
Query: 1096 IALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGV 1155
+ + A I EN+++ G E+ L + RG
Sbjct: 84 KYTITRSLA-----ILENVIFCHQG-------ESNWP---------LLD-------MRG- 114
Query: 1156 QLSGGQKQ------RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTT- 1208
+ SGG+K R+A+A N IL LDE T+ LD E+ ++++L ++ +R +
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIEERKSQ 171
Query: 1209 -----IIVAH 1213
I++ H
Sbjct: 172 KNFQLIVITH 181
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 5e-04
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 22/137 (16%)
Query: 497 SEAMSFISNLP---ERFET---------QVGERGIQLSGGQKQRIAISRAIVKNP---SI 541
EA+ F +P + +T ++G+ LSGG+ QR+ +++ + K ++
Sbjct: 795 EEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTL 854
Query: 542 LLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNAD-VIAV-----VQGR 594
+LDE T+ L E + E L R V G T VV+ H L I+ AD +I + G
Sbjct: 855 YILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGG 914
Query: 595 KIVKTGSHEELISNPNS 611
+IV TG+ EE+ S
Sbjct: 915 EIVATGTPEEVAKVEAS 931
|
Length = 943 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 6e-04
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 1145 GYSTKVGERGVQLSGGQKQRVAIARAVLKNP---EILLLDEATSALDVESERVVQQALQR 1201
GY K+G+ LSGG+ QRV +A+ + K + +LDE T+ L E R + + L R
Sbjct: 820 GY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHR 878
Query: 1202 LMRKRTTIIV-AHRLSTIKNADQISVI--------ESGKIIEQGTHSSLVENED---GAY 1249
L+ K T++V H L IK AD I I G+I+ GT + + E G Y
Sbjct: 879 LVDKGNTVVVIEHNLDVIKTADWI--IDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRY 936
Query: 1250 FKLI 1253
K +
Sbjct: 937 LKPV 940
|
Length = 943 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 27/175 (15%)
Query: 392 PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL 451
PS DV+ D+ G+I+ + G G+ ++ ++ + E +G I L G I
Sbjct: 262 PSIRDVS------FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH 315
Query: 452 D-LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE-ITRAAKLSEAMSFISNLPER 509
+ + + LV +E R +Y D I+ + + N +
Sbjct: 316 NANEAINHGFALVTEER-------RSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK 368
Query: 510 FETQ-------VGERGIQ-----LSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
+TQ V G + LSGG +Q++ I R ++ P IL+LDE T +D
Sbjct: 369 SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
|
Length = 491 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
LSGG+K R+ + +++ P +L++DE T+ +D+ES + AL+ + T I V+H
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALE--KYEGTLIFVSH 493
|
Length = 530 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 1155 VQLSGGQKQRVAIARAV---LKNPEIL-LLDEATSALDVESERVVQQALQR-LMRKRTTI 1209
+QLSGG+K+ A+A + P L +LDE LD + + +A+ L++ I
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 1210 IVAHRLSTIKNADQISVIESGKIIEQGTH 1238
++ H + AD++ I K+I
Sbjct: 136 VITHLPELAELADKL--IHIKKVITGVYK 162
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLI 1066
I L SY RP I + + +V G+ +VG +G+GKST+LSLI
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLI 306
|
Length = 490 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 1125 EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEAT 1184
EV+E +L N I LP G G LS Q++R+ IA ++ NP I+ +DE T
Sbjct: 997 EVMELVELDNLKDAIVGLP-------GVTG--LSTEQRKRLTIAVELVANPSIIFMDEPT 1047
Query: 1185 SALDVESERVVQQALQRLMRK-RTTIIVAHRLS 1216
S LD + +V + ++ + RT + H+ S
Sbjct: 1048 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 64/179 (35%)
Query: 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ-QIGL----------- 462
L+G +G GKST + ++ EP +G + LD L LRQ Q
Sbjct: 32 LIGANGCGKSTFMKILGGDLEPSAGNVSLD----PNERLGKLRQDQFAFEEFTVLDTVIM 87
Query: 463 -------VNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF----- 510
V QE R+ I Y + + E+ + A L E +F
Sbjct: 88 GHTELWEVKQE--------RDRI-YALPEMSEEDGMKVADL-EV---------KFAEMDG 128
Query: 511 ---ETQVGE----RGI----------QLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
E + GE GI +++ G K R+ +++A+ NP ILLLDE T+ LD
Sbjct: 129 YTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187
|
Length = 530 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 521 LSGGQKQRIAISRAIVKNPS--ILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAH 577
LSGG+ QRI ++ I + + +LDE + L + L R+ +G T +VV H
Sbjct: 489 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEH 548
Query: 578 RLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
TIR AD + A G ++V +G+ EE+++NP+S
Sbjct: 549 DEDTIRAADYVIDIGPGAGEHGGEVVASGTPEEILANPDS 588
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 519 IQLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVV 574
+QLSGG+K+ A++ + +K + +LDE LD ++ EA+ +V V+
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 575 VA-HRLSTIRNADVIA 589
V H AD +
Sbjct: 136 VITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 36/224 (16%)
Query: 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK-GLDLKWLRQQIGLVNQ--- 465
G+I+ G GSG++ +++ + + GEI L+G +I L +++ + + +
Sbjct: 289 GEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRR 348
Query: 466 EPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG------ 518
+ F +I +N+ I+R+ K + E E + E
Sbjct: 349 DNGFFPNFSIAQNM----------AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL 398
Query: 519 ---------IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V 568
+LSGG +Q++ IS+ + P +++ DE T +D ++ + + + ++
Sbjct: 399 KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD 458
Query: 569 GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
G+ ++V+ L I I V + G ++++N +
Sbjct: 459 GKVILMVSSELPEI-----ITVCDRIAVFCEGRLTQILTNRDDM 497
|
Length = 510 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
LSGG++ R+ +AR LK +L+LDE T+ LDVE
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVE 474
|
Length = 635 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 1156 QLSGGQKQRVAIAR--AVLK-NPE-ILLLDEATSALD-VESERVVQQALQRLMRKRTT-I 1209
LSGG+K A+A A+ K P +LDE + LD ER L + K T I
Sbjct: 1089 LLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN--LLKEFSKNTQFI 1146
Query: 1210 IVAHRLSTIKNADQI 1224
++ H T++ ADQ+
Sbjct: 1147 VITHNKGTMEVADQL 1161
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 63/235 (26%), Positives = 93/235 (39%), Gaps = 63/235 (26%)
Query: 405 LDIPAGKIVALVGGSGSGK-STVISLI-----ERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
+DIP K+V + G SGSGK S I R+ E LS + RQ
Sbjct: 16 VDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSA---------------YARQ 60
Query: 459 QIGLVNQ---------EPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER 509
+G +++ PA+ I + +T+ +T E ++ L R
Sbjct: 61 FLGQMDKPDVDSIEGLSPAI---AIDQKTTSRNPRSTVGTVT------EIYDYLRLLFAR 111
Query: 510 --------FETQVG------ERGIQ-LSGGQKQRIAISRAIVKNPS--ILLLDEATSALD 552
F VG R LSGG+ QRI ++ I + + +LDE + L
Sbjct: 112 VGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 171
Query: 553 AESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVI------AVVQGRKIVKTG 600
+ + E L R+ +G T +VV H TIR AD + A V G +IV G
Sbjct: 172 PRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1265 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-219 Score=1993.75 Aligned_cols=1209 Identities=53% Similarity=0.860 Sum_probs=1113.1
Q ss_pred hHhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 000830 40 SVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSW 119 (1265)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1265)
..++.++|+|..+.++.+++++.+++++.++..|++.++++.+++.+..... . ...+....+++.+++++++.++..|
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~-~-~~~~~~~~~~l~~~~lg~~~~~~~~ 89 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN-K-IASSEVSKVALYFVYLGVGVFISGF 89 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc-h-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999998865331 1 2224567788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 120 IEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFA 199 (1265)
Q Consensus 120 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 199 (1265)
++..||.+.++|...++|.++++.+++++++|||.+ .+|++.+++++|++.|++++++.+..+++.+.+++.++++.|+
T Consensus 90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999984 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 000830 200 RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGR 279 (1265)
Q Consensus 200 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 279 (1265)
..|+|+++++.+.|++++...++.+.+.+...+.+++++++.++++|+++++|||.+|+.|+.+.++|.+..+...+...
T Consensus 169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi 248 (1228)
T KOG0055|consen 169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI 248 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 000830 280 KAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMI 359 (1265)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l 359 (1265)
+...+.++..++..++.+..+++.+|||+.++..+..++|.+++.++++++....+++..+.+..+..+++|+.+|++.+
T Consensus 249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i 328 (1228)
T KOG0055|consen 249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI 328 (1228)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence 99999999999999999999999999999999999999999999888899989999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 000830 360 ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1265)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 439 (1265)
+..|+++.....+.......|.|+|+||+|+||.+++.++|+|+||+|++|+++||||||||||||++++|.|||+|++|
T Consensus 329 ~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G 408 (1228)
T KOG0055|consen 329 DRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG 408 (1228)
T ss_pred cCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc
Confidence 99888766443333455678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCC
Q 000830 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (1265)
Q Consensus 440 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 519 (1265)
+|++||.|+++++.+|+|++||.|+|+|.||++||+|||+||+|+++.+++.+|||++++++||..||+||||.+||+|.
T Consensus 409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred eEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEe
Q 000830 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1265)
Q Consensus 520 ~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 599 (1265)
+|||||||||||||||++||+||||||||||||+++|+.++++|++.++|||+|+|||||+++++||+|+||++|+|+|.
T Consensus 489 qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCccc-ccCcccchhhhcccCCCCCCC--c
Q 000830 600 GSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSF-GASFRSEKESVLSHGAADATE--P 676 (1265)
Q Consensus 600 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~ 676 (1265)
|+|+||++.+ |.|.+|++.|+...+.+..+..++.. .....+...+....+. +......... .....++.++ .
T Consensus 569 G~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~~~~~~~~~--~~~~~s~~~s~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~ 644 (1228)
T KOG0055|consen 569 GTHDELIALG-GIYSSLVRLQELEKAAEDEEEEESLK--EERSRSLKSSSSSPSLSRGSNRSNLLS-VKPEGEDPEEPVS 644 (1228)
T ss_pred cCHHHHHhcc-chHHHHHHHHhhhhhhhccccccchh--hhhhhccccccccccccCCcccccccc-ccccccccccccc
Confidence 9999999984 99999999997665433211000000 0000000000000000 0000000000 0000000000 1
Q ss_pred cchhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhhhhHHHHHHHHHHHHHHHHHHH
Q 000830 677 ATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTTQREVKKITILFCCAAVITVIVH 755 (1265)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~ 755 (1265)
......++++++++.+|+|+++++|.+++++.|..+|++++.+++.+..+.. +++........|.++|++++++..+..
T Consensus 645 ~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~ 724 (1228)
T KOG0055|consen 645 EEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITN 724 (1228)
T ss_pred cccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1114567889999999999999999999999999999999999999999885 444455545559999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 756 AIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIA 835 (1265)
Q Consensus 756 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 835 (1265)
+++++++.+.++++..|+|.++|+++++++++|||.++|. |.|.+|+.+|+..++..+.+.+..+++++..++++++++
T Consensus 725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiia 803 (1228)
T KOG0055|consen 725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIA 803 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHH
Q 000830 836 FILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKR 915 (1265)
Q Consensus 836 ~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~ 915 (1265)
|+++|+++++++++.|++++..+.+.+++.+...+.++.+.++...+.|+++|++||++|+.|+++.+.|.+.++...+.
T Consensus 804 f~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~ 883 (1228)
T KOG0055|consen 804 FIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKS 883 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 916 SFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFE 995 (1265)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 995 (1265)
..+++.+.++.+++++++.++.+++++|+|.+++..+.+++..++.+++++.+.+..++++.++.|++.++..++.++++
T Consensus 884 ~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~ 963 (1228)
T KOG0055|consen 884 SFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFE 963 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccCC--CCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC
Q 000830 996 VLDRKTQVIGD--IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073 (1265)
Q Consensus 996 ~~~~~~~~~~~--~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~ 1073 (1265)
+++++|..+.. .+...++.+|+|+|+||+|+||+||+.+||+|+||+|++||++||||||||||||++.||.|||||+
T Consensus 964 i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~ 1043 (1228)
T KOG0055|consen 964 ILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD 1043 (1228)
T ss_pred HhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 99999866543 2333556789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCC
Q 000830 1074 AGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153 (1265)
Q Consensus 1074 ~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~ 1153 (1265)
+|.|.|||+||+++++++||++|++|+|||.||++||||||.||.++++++|+.+||+.|++|+||.+||+||||.|||+
T Consensus 1044 ~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGer 1123 (1228)
T KOG0055|consen 1044 AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGER 1123 (1228)
T ss_pred CCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcc
Confidence 99999999999999999999999999999999999999999999666999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEE
Q 000830 1154 GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKII 1233 (1265)
Q Consensus 1154 G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Iv 1233 (1265)
|.+||||||||||||||++||||||||||||||||.++|+.||++|+++..+||+|+|||||+||++||.|+|+++|+|+
T Consensus 1124 G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1124 GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVV 1203 (1228)
T ss_pred cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhhhhhcCCcHHHHHHHHhh
Q 000830 1234 EQGTHSSLVENEDGAYFKLINLQQ 1257 (1265)
Q Consensus 1234 e~Gt~~eLl~~~~g~f~~l~~~~~ 1257 (1265)
|+|||+||++ ++|.|++|++.|.
T Consensus 1204 E~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1204 EQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred ecccHHHHHh-CCCchHHHhhhcc
Confidence 9999999999 8999999999875
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-174 Score=1723.93 Aligned_cols=1206 Identities=30% Similarity=0.493 Sum_probs=1018.2
Q ss_pred hhHhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 000830 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (1265)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1265)
++.++..+|+|..+.++.+++++++++++.+++.|++|++++.++|.+... ..+..+.+.+++++++.+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~--------~~~~~~~~~~~~~~i~~~~~~ 114 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG--------ENVNDIIFSLVLIGIFQFILS 114 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHHHH
Confidence 445789999999988888889999999999999999999999999976321 112233455666677788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (1265)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 198 (1265)
|++.+++.+.++++..++|.++|++++++|++|||+ .++|++++++++|++.+++.++..+..++..++.++++++++|
T Consensus 115 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~ 193 (1466)
T PTZ00265 115 FISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN-NPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL 193 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 5889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 000830 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (1265)
Q Consensus 199 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (1265)
+++|+|++++++++|+++++..++.++.++..++.++..++.++.++|+++|+++||+|+.|+.+.++|++..+...+..
T Consensus 194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~ 273 (1466)
T PTZ00265 194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI 273 (1466)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000830 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKH--------ISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (1265)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 350 (1265)
.+...+.++..++..++.++.+++++|+|++++..| .+++|.+++++++.+.....+..+.+.+..++.+.+
T Consensus 274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~ 353 (1466)
T PTZ00265 274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888888889999999999999875 477888888777766666666777888999999999
Q ss_pred HHHHHHHHhccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHH
Q 000830 351 AAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI 430 (1265)
Q Consensus 351 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll 430 (1265)
|++|++++++.+++.+. ...+...+. .+.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|
T Consensus 354 a~~ri~~ii~~~~~~~~-~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL 431 (1466)
T PTZ00265 354 ATNSLYEIINRKPLVEN-NDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431 (1466)
T ss_pred HHHHHHHHHcCCCCCCC-CCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999987765432 111111222 2479999999999865555799999999999999999999999999999999
Q ss_pred HhccCCCcceEEE-CCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCC--------------------------
Q 000830 431 ERFYEPLSGEILL-DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-------------------------- 483 (1265)
Q Consensus 431 ~~~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~-------------------------- 483 (1265)
+|+|+|++|+|.+ ||+++++++.+++|++||||+|+|.||++||+|||.+|.+
T Consensus 432 ~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1466)
T PTZ00265 432 ERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKR 511 (1466)
T ss_pred HHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccc
Confidence 9999999999999 5799999999999999999999999999999999999742
Q ss_pred -------------------------------CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 484 -------------------------------DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 484 -------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
..++++++++|+.+++++|+..||+||||.+|++|.+|||||||||+||
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIA 591 (1466)
T PTZ00265 512 NSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591 (1466)
T ss_pred ccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHH
Confidence 2456889999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCC----------------
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGR---------------- 594 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G---------------- 594 (1265)
|||+++|+|||||||||+||++++..|++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 592 RAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~ 671 (1466)
T PTZ00265 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT 671 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence 99999999999999999999999999999999986 489999999999999999999999986
Q ss_pred -------------------------------EEEEeeCcchhccCCchHHHHHHHHHHHhhhccCCC-CCCCCCC-CCcc
Q 000830 595 -------------------------------KIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSS-QCPNMGR-PLSI 641 (1265)
Q Consensus 595 -------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~ 641 (1265)
+|+|+|+|+||++..++.|+.|+..|.......... ....... ....
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~ 751 (1466)
T PTZ00265 672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAY 751 (1466)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccc
Confidence 599999999999855899999998875432111000 0000000 0000
Q ss_pred cccc-cc---cCCCc--ccccCcc-cchhhhcccCCCCC-CC-c----------cchhhhHHHHHHHhhchhhHHHHHHH
Q 000830 642 KFSR-EL---SGTRT--SFGASFR-SEKESVLSHGAADA-TE-P----------ATAKHVSAIKLYSMVRPDWTYGVCGT 702 (1265)
Q Consensus 642 ~~~~-~~---~~~~~--~~~~~~~-~~~~~~~~~~~~~~-~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1265)
.... .. ..... ....... ............+. .+ + .........++++..+++++.+.+++
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1466)
T PTZ00265 752 KDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIA 831 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 00000 0000000 00000000000000 00 0 00111134455666777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 703 ICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAIL 782 (1265)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 782 (1265)
+++++.+...|+++++++.++..++.. .........|.+++++++++..++.+++.++..+.++++..++|..+|++++
T Consensus 832 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll 910 (1466)
T PTZ00265 832 LSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENIL 910 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988866531 1122234567777888888889999999999999999999999999999999
Q ss_pred hCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 783 SNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKL 862 (1265)
Q Consensus 783 ~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~ 862 (1265)
++|++|||+..+++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++........+
T Consensus 911 ~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 990 (1466)
T PTZ00265 911 YQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRAR 990 (1466)
T ss_pred cCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877899999999999999999999999999999999999999999999999988876655544333222111
Q ss_pred HHHh--hhhH-------------HHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000830 863 FFQG--YGGN-------------LSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFY 927 (1265)
Q Consensus 863 ~~~~--~~~~-------------~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1265)
.... .... ..+........+.|++.|++|||+|+.|+++.++|.+..+...+...+...+.++++
T Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1466)
T PTZ00265 991 LTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLW 1070 (1466)
T ss_pred HHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0000 122345667899999999999999999999999999999999888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC-
Q 000830 928 GISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD- 1006 (1265)
Q Consensus 928 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~- 1006 (1265)
++.+++.++..++++|+|++++..+.++++.++.++.++.+...++..+..+++++..+..+++|++++++.+++.+..
T Consensus 1071 ~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~ 1150 (1466)
T PTZ00265 1071 GFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRD 1150 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCC
Confidence 9999999999999999999999999999999988877766666667888899999999999999999999876543211
Q ss_pred -CCcc---cCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC----------
Q 000830 1007 -IGEE---LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP---------- 1072 (1265)
Q Consensus 1007 -~~~~---~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p---------- 1072 (1265)
.+.. .+...|.|+|+||+|+||++|+.+||+|+||+|+|||++|||||||||||||+++|+|||+|
T Consensus 1151 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~ 1230 (1466)
T PTZ00265 1151 NGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKN 1230 (1466)
T ss_pred CcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccc
Confidence 1111 12345789999999999977666899999999999999999999999999999999999999
Q ss_pred --------------------------------------------CCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcc
Q 000830 1073 --------------------------------------------TAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFAT 1108 (1265)
Q Consensus 1073 --------------------------------------------~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~g 1108 (1265)
++|+|+|||+|++++++++||++|+||||||+||+|
T Consensus 1231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g 1310 (1466)
T PTZ00265 1231 EHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM 1310 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc
Confidence 699999999999999999999999999999999999
Q ss_pred cHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCC
Q 000830 1109 SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188 (1265)
Q Consensus 1109 TIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD 1188 (1265)
||||||.+|.++++++|+++||+.|++++||.+||+||||.|||+|.+|||||||||||||||+|+|+||||||||||||
T Consensus 1311 TIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265 1311 SIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc--CCceEEEEecCchhhhccCEEEEEeC----CEEE-EecChhhhhhcCCcHHHHHHHHh
Q 000830 1189 VESERVVQQALQRLM--RKRTTIIVAHRLSTIKNADQISVIES----GKII-EQGTHSSLVENEDGAYFKLINLQ 1256 (1265)
Q Consensus 1189 ~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~DrI~vl~~----G~Iv-e~Gt~~eLl~~~~g~f~~l~~~~ 1256 (1265)
++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |+++ |.|+|+||+++.+|.|++||+.|
T Consensus 1391 ~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1391 SNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 999999999999984 68999999999999999999999999 9954 89999999974589999999876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-169 Score=1597.81 Aligned_cols=1087 Identities=22% Similarity=0.327 Sum_probs=848.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC----CchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 125 WMYTGERQAAKMRMAYLRSMLNQ----DISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1265)
Q Consensus 125 ~~~~~~~~~~~lR~~~~~~l~~~----~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 200 (1265)
+.+...+++.++|..+...++++ +-..-.. .++|+++|.+++|++++.++. .+++.+|....-+++..++
T Consensus 262 ~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~-~t~G~ivNlms~D~~ri~~~~-----~~~h~~w~~Plqi~~~l~l 335 (1381)
T KOG0054|consen 262 YFFVSFRVGMRLRSALISAIYRKALRLSNSARGE-TTVGEIVNLMSVDAQRLSDAA-----CFLHLLWSAPLQIILALYL 335 (1381)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccC-CCcchhhhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 44567788888887765555544 4433323 578999999999999999975 3566666666666666665
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHH
Q 000830 201 VWQI----SLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYK 276 (1265)
Q Consensus 201 ~~~l----~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~ 276 (1265)
.|.+ +++.++++.+++++..+++++.++...+..+..+++.+.++|.++|||+||+|+||+.+.++.++.++++.+
T Consensus 336 Ly~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~ 415 (1381)
T KOG0054|consen 336 LYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELK 415 (1381)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 5553 556666677777788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000830 277 YGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVV-VHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPI 355 (1265)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri 355 (1265)
..+|.....++...+..+...++.++ .++.+. ..++.+++..+|+.+..+-.+..|+..++..+..+.++.+|.+|+
T Consensus 416 ~lrk~~~~~~~~~~~~~~~p~lv~~~--tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri 493 (1381)
T KOG0054|consen 416 LLRKSAYLSALNSFLNFFSPVLVSVV--TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRL 493 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888776665555544333 344444 557788888889887766677778888899999999999999999
Q ss_pred HHHhccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 000830 356 FEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 356 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 435 (1265)
.+++..++.... .....+..+.+..|+++|.+|+|++..+.+.|+||||+|++|+.+||||+.|||||+|+++|+|+++
T Consensus 494 ~~fl~~~e~~~~-~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~ 572 (1381)
T KOG0054|consen 494 KEFLLSEELDPD-SVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP 572 (1381)
T ss_pred HHHhcCcccCcc-ccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc
Confidence 999976433221 1111122334457999999999986445569999999999999999999999999999999999999
Q ss_pred CCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCccccccccc
Q 000830 436 PLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVG 515 (1265)
Q Consensus 436 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 515 (1265)
..+|++.++| .++||||+||+|+|||||||+||.|.. .+...++.+.|.+..+++.||.|+.|+||
T Consensus 573 ~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~d-~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG 638 (1381)
T KOG0054|consen 573 KLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSPYD-EERYDKVIKACALKKDLEILPFGDLTEIG 638 (1381)
T ss_pred cccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCcccc-HHHHHHHHHHccCHhHHhhcCCCCcceec
Confidence 9999999998 499999999999999999999998753 34444455555666889999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCC
Q 000830 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGR 594 (1265)
Q Consensus 516 ~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G 594 (1265)
|+|.||||||||||+||||+|+|+||++||||+||+|+|+.++| .++|+.+.++||+|+|||+++++++||+|++|+||
T Consensus 639 ErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G 718 (1381)
T KOG0054|consen 639 ERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDG 718 (1381)
T ss_pred CCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCC
Confidence 99999999999999999999999999999999999999987655 56888888899999999999999999999999999
Q ss_pred EEEEeeCcchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcc--cCCCC
Q 000830 595 KIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLS--HGAAD 672 (1265)
Q Consensus 595 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 672 (1265)
+|++.|+|+|+++. +..+.++......+...+ ...... .....+.+... +.........+...... .....
T Consensus 719 ~I~~~Gty~el~~~-~~~~~~l~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1381)
T KOG0054|consen 719 KIVESGTYEELLKS-GGDFAELAHEEESEQEEE--ASEKDL---ESGESSRESES-RSLESLSSEEEKSKDEKEEEDKLV 791 (1381)
T ss_pred eEecccCHHHHHhc-chhHHHHhhccchhhccc--cccccc---cccccccchhh-hhhhhhcccccccccccchhhHHH
Confidence 99999999999976 777777733222111111 000000 00000000000 00000000000000000 00000
Q ss_pred CCCccchhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----Ccchh-h---hhHHHHHHHH
Q 000830 673 ATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYM----DWDTT-Q---REVKKITILF 744 (1265)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~---~~~~~~~~~~ 744 (1265)
..++++.+.+.+.. |+.|+..+.....+...+.......+.....++|+ ++... . .+...+.++|
T Consensus 792 ~~ee~~~G~v~~~v-------Y~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY 864 (1381)
T KOG0054|consen 792 QEEERETGKVSWSV-------YKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVY 864 (1381)
T ss_pred HHHHHhcCEeeHHH-------HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHH
Confidence 11112333344333 33333331111111000111111222333334443 22211 1 2456788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000830 745 CCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQN 824 (1265)
Q Consensus 745 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~ 824 (1265)
.+++++..++..++.+.+...+.++++++|++|+++++++||+|||+ +|+|||+|||++|++.+|..++..+..+++.
T Consensus 865 ~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~ 942 (1381)
T KOG0054|consen 865 ALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTVDVLLPFTLEFFLQS 942 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHhhhHHHHHhccHHH
Q 000830 825 FGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKA----NMLAAEAVSNIRTVAAFCSEDK 900 (1265)
Q Consensus 825 ~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~l~gi~tIra~~~e~~ 900 (1265)
++.+++.++++.+..|++ +++++|+.+++.+++.+| ...+|+++|..+.. .+|++|++.|+.|||||+.+++
T Consensus 943 ~~~~l~~~~vi~~~~P~f---li~~~pl~v~~~~~~~~Y-~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~r 1018 (1381)
T KOG0054|consen 943 LLNVLGILVVISYVTPWF---LIAIIPLGVIYYFVQRYY-LATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEER 1018 (1381)
T ss_pred HHHHHHHHHHhhHHhHHH---HHHHHHHHHHHHHHHHHH-HHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHH
Confidence 999999988888887754 556667766666655544 44567887764433 3899999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 901 VLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALV 980 (1265)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1265)
|.+++...++.+.+..+......-++..-..++..+..+.+..+....-.. ..+.+.+-.++.+.+.....++..+...
T Consensus 1019 f~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~-~~~~g~vGLslsyal~lt~~l~~~vR~~ 1097 (1381)
T KOG0054|consen 1019 FIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSG-LISPGLVGLSLSYALQLTGLLQWLVRQS 1097 (1381)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887665433333322222333222222222221111111 1334544445555666666677777888
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCC----CCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 000830 981 PDLLKGNQMAASVFEVLDRKTQVIGD----IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSG 1056 (1265)
Q Consensus 981 ~~~~~~~~~~~ri~~~~~~~~~~~~~----~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SG 1056 (1265)
.+++..++++||+.++.+.++|.+.. .+++.||.+|.|+|+|++.+|.++ .++|||||||+|+||||||||||||
T Consensus 1098 ~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTG 1176 (1381)
T KOG0054|consen 1098 SELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTG 1176 (1381)
T ss_pred HHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCC
Confidence 89999999999999999977662211 135568999999999999999754 3679999999999999999999999
Q ss_pred CChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchH
Q 000830 1057 SGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAH 1136 (1265)
Q Consensus 1057 SGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~ 1136 (1265)
||||||+++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+||+| ..+++|++||+|+++++++
T Consensus 1177 aGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP-f~e~sD~~IW~ALe~~~Lk 1255 (1381)
T KOG0054|consen 1177 AGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP-FDEYSDDEIWEALERCQLK 1255 (1381)
T ss_pred CCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc-ccccCHHHHHHHHHHhChH
Confidence 999999999999999999999999999999999999999999999999999999999998 6789999999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCch
Q 000830 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLS 1216 (1265)
Q Consensus 1137 ~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ 1216 (1265)
++|+++|+|||++|.|+|.|||.||||++||||||||++|||+||||||++|++||..||++||+.|++||||+||||++
T Consensus 1256 ~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~ 1335 (1381)
T KOG0054|consen 1256 DVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLN 1335 (1381)
T ss_pred HHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHHHhh
Q 000830 1217 TIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQ 1257 (1265)
Q Consensus 1217 ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~~~~ 1257 (1265)
||+|||||+|||+|+|+|+|+|++|++++++.|++++.+..
T Consensus 1336 TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1336 TVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAA 1376 (1381)
T ss_pred hhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHH
Confidence 99999999999999999999999999988999987776543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-159 Score=1591.59 Aligned_cols=1151 Identities=20% Similarity=0.250 Sum_probs=840.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 000830 60 LGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSC--WMYTGERQAAKMR 137 (1265)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lR 137 (1265)
++.++.++..++....|++++.+++.+.... . . .... .+...+++..++..++ ...+. ...++.++...++
T Consensus 305 ~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~--~-~-~~~~-~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~ir~~L~ 377 (1622)
T PLN03130 305 LGGFFKIGNDLSQFVGPLLLNLLLESMQNGE--P-A-WIGY-IYAFSIFVGVVLGVLC--EAQYFQNVMRVGFRLRSTLV 377 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c-c-hHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555556668889998764321 1 0 0111 1111111111111111 11121 2356677777788
Q ss_pred HHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 138 MAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIAL 217 (1265)
Q Consensus 138 ~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~ 217 (1265)
..+|+|+++++..++++ .++|+++|++++|++.+++++. .+..++..++.+++++++++......+++.++++.++++
T Consensus 378 ~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~ 455 (1622)
T PLN03130 378 AAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFP 455 (1622)
T ss_pred HHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999987 5899999999999999999874 455555555555555444443222222222233334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 218 AGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLF 297 (1265)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1265)
+..++.++.++..++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+..++.....++...+......
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 535 (1622)
T PLN03130 456 IQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPV 535 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888999999999999999999999999999999999999999999888877776666554433222221
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCC
Q 000830 298 LSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDK 377 (1265)
Q Consensus 298 ~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 377 (1265)
.+.++++|++.+.+|.+++|.+++++..+.....|+..++..+..+.+++++++|+.++++.++..... . .....
T Consensus 536 --~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~--~-~~~~~ 610 (1622)
T PLN03130 536 --LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP--N-PPLEP 610 (1622)
T ss_pred --HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--C-CcccC
Confidence 234556788888899999999998877777777888888889999999999999999999754332110 0 01111
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCc-ceEEECCeeCCCCChHHH
Q 000830 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-GEILLDGNNIKGLDLKWL 456 (1265)
Q Consensus 378 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~~g~~~~~~~~~~~ 456 (1265)
..+.|+++|++|+|+++++.++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+.
T Consensus 611 ~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~------------ 678 (1622)
T PLN03130 611 GLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR------------ 678 (1622)
T ss_pred CCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc------------
Confidence 2347999999999985445679999999999999999999999999999999999999999 999864
Q ss_pred hhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
++|+||+|+||||++||||||+||.|. +++++.++++.+++++++..||+|++|.|||+|.+|||||||||+||||+|
T Consensus 679 -~~Iayv~Q~p~LfngTIreNI~fg~~~-d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly 756 (1622)
T PLN03130 679 -GTVAYVPQVSWIFNATVRDNILFGSPF-DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVY 756 (1622)
T ss_pred -CeEEEEcCccccCCCCHHHHHhCCCcc-cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999999999874 688999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHH
Q 000830 537 KNPSILLLDEATSALDAESENSVQ-EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1265)
++|+||||||||||||+++++++. ++++...+++|+|+||||++.++.||+|++|++|+|+++|+|+|++++ ++.|++
T Consensus 757 ~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~~ 835 (1622)
T PLN03130 757 SNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQK 835 (1622)
T ss_pred CCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHHH
Confidence 999999999999999999998774 567777789999999999999999999999999999999999999976 788888
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHHHHhhchhh
Q 000830 616 LVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDW 695 (1265)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1265)
+...+...++........... ............ ......................++++..+.+.+..+..|.+...
T Consensus 836 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g 912 (1622)
T PLN03130 836 LMENAGKMEEYVEENGEEEDD-QTSSKPVANGNA--NNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALG 912 (1622)
T ss_pred HHHhccccccccccccccccc-cccccccccccc--ccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhc
Confidence 876543211110000000000 000000000000 00000000000000000000011111222233333333332211
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 696 TY-GVCGTICAIIAGAQMPLFALGVSQALVAYYMDWD-TTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRV 773 (1265)
Q Consensus 696 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 773 (1265)
.. ....+++..+ ....+. .....+..+|.+.. ........+.++|++++++..++.+++.+++.+.+.+++.++
T Consensus 913 ~~~~~~~~~~~~~---~~~~~~-~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L 988 (1622)
T PLN03130 913 GAWVVMILFLCYV---LTEVFR-VSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRL 988 (1622)
T ss_pred cHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111100 001111 11112222232211 111223456777888888888899999999999999999999
Q ss_pred HHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 774 REKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI 853 (1265)
Q Consensus 774 r~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~ 853 (1265)
|.+++++++++|++|||+ +|+|+++|||++|++.++..++..+..++..++.+++.++++++++|... ++++|+.
T Consensus 989 ~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~---~~~~pl~ 1063 (1622)
T PLN03130 989 HDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISL---WAIMPLL 1063 (1622)
T ss_pred HHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 999999999999999996 89999999999999999999999999999998888888888887776432 2334443
Q ss_pred HHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000830 854 ISGHISEKLFFQGYGGNLSK----AYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGI 929 (1265)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1265)
+++...... ..+..++.++ ..+...+++.|+++|++|||+|+.++++.+.+.+..+...+..+.......+....
T Consensus 1064 ~~~~~~~~~-~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 1142 (1622)
T PLN03130 1064 VLFYGAYLY-YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIR 1142 (1622)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 2223333333 23445689999999999999999999998888877777655444332222222111
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhc-cc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000830 930 SQFFIFSSYGLALWYG-SVLMGKEL-AS-----FKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1265)
Q Consensus 930 ~~~~~~~~~~~~~~~g-~~l~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 1002 (1265)
..++. ++.++++ ...+..+. .. .+.+-..+.+.......+..+......++..+.+++|+.++.+.++|
T Consensus 1143 l~~~~----~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E 1218 (1622)
T PLN03130 1143 LETLG----GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSE 1218 (1622)
T ss_pred HHHHH----HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 11111 1222222 22222211 10 11111112222333344555556667788899999999999987765
Q ss_pred ccCC----CCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEE
Q 000830 1003 VIGD----IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078 (1265)
Q Consensus 1003 ~~~~----~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1078 (1265)
.... ...+.||.+|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+
T Consensus 1219 ~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~ 1297 (1622)
T PLN03130 1219 APLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRIL 1297 (1622)
T ss_pred ccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEE
Confidence 4321 112234667899999999999743 24699999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCC
Q 000830 1079 VDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLS 1158 (1265)
Q Consensus 1079 idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1158 (1265)
|||+||+++++++||++|++|||||+||+|||||||+++. +++|+|+|+|++.++++++|.++|+||||+|||+|.+||
T Consensus 1298 IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLS 1376 (1622)
T PLN03130 1298 IDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFS 1376 (1622)
T ss_pred ECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCC
Confidence 9999999999999999999999999999999999999975 689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 000830 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1159 gGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~ 1238 (1265)
|||||||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++||||+||++|+|+|+|+|
T Consensus 1377 gGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~ 1456 (1622)
T PLN03130 1377 VGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTP 1456 (1622)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCcHHHHHHHHhhc
Q 000830 1239 SSLVENEDGAYFKLINLQQR 1258 (1265)
Q Consensus 1239 ~eLl~~~~g~f~~l~~~~~~ 1258 (1265)
+||+++++|.|++|++.+..
T Consensus 1457 ~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1457 ENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred HHHHhCCCCHHHHHHHHcCh
Confidence 99998668999999987653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-157 Score=1584.43 Aligned_cols=1145 Identities=20% Similarity=0.259 Sum_probs=841.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 60 LGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMA 139 (1265)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~ 139 (1265)
++.++.++..++....|++++.+++.+.... . . .....+...+++..++..++.....+.....+.++...++..
T Consensus 305 ~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~--~-~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~ 379 (1495)
T PLN03232 305 LGGIFKIGHDLSQFVGPVILSHLLQSMQEGD--P-A--WVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAA 379 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556556668899998764321 1 0 000111111111111111111111122245667777778889
Q ss_pred HHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 000830 140 YLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIV---PLIA 216 (1265)
Q Consensus 140 ~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~---p~~~ 216 (1265)
+|+|+++++..++++ .++|+++|++++|++.+++++ ..+..++..++.+++++++++ +.+++..++.+ .+++
T Consensus 380 i~~k~l~l~~~~~~~-~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v~~l~~ 454 (1495)
T PLN03232 380 IFHKSLRLTHEARKN-FASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLILFLLI 454 (1495)
T ss_pred HHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHH
Confidence 999999999999987 589999999999999999986 344444444444443333322 23333333222 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 217 LAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296 (1265)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1265)
++..++.++.++..++.++..+++.+.++|.++||++||+|+||+.+.+++++.++++.+..++.....++...+.....
T Consensus 455 pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 534 (1495)
T PLN03232 455 PLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP 534 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888999999999999999999999999999999999999999999999998888887766655433222221
Q ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCC
Q 000830 297 FLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLD 376 (1265)
Q Consensus 297 ~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 376 (1265)
..+.++++|++++.++.+++|.+++++..+.....|+..++..+..+.++++|.+|+.++++.+++.... . ....
T Consensus 535 --~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~--~-~~~~ 609 (1495)
T PLN03232 535 --VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ--N-PPLQ 609 (1495)
T ss_pred --HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--c-CCcC
Confidence 1233467788888899999999999877777777888888889999999999999999999765432111 1 1111
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH
Q 000830 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1265)
Q Consensus 377 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1265)
...+.|+++|++|+|+++++.++|+|+||+|++||+++||||||||||||+++|+|+|+|++|.+. .+
T Consensus 610 ~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~ 677 (1495)
T PLN03232 610 PGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VI 677 (1495)
T ss_pred CCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------Ee
Confidence 123479999999999864456799999999999999999999999999999999999999998763 25
Q ss_pred hhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
|++|+||+|+||||++||||||+||.+ .+++++.++++.+++++++..||+|++|.|||+|.+||||||||||||||+|
T Consensus 678 ~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 756 (1495)
T PLN03232 678 RGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY 756 (1495)
T ss_pred cCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence 678999999999999999999999986 5788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHH-HHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHH
Q 000830 537 KNPSILLLDEATSALDAESENSVQE-ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1265)
++|+||||||||||||+++++++.+ ++....+++|+|+||||++.++.||+|++|++|+|++.|+|+|++++ ++.|.+
T Consensus 757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~ 835 (1495)
T PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKK 835 (1495)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHH
Confidence 9999999999999999999987754 56666789999999999999999999999999999999999999986 788888
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHHHHhhchhh
Q 000830 616 LVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDW 695 (1265)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1265)
++..+...++.....+..+...+. .+.. .............+..........+++...+.+.+..+..|.+..+
T Consensus 836 l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~ 909 (1495)
T PLN03232 836 LMENAGKMDATQEVNTNDENILKL-----GPTV-TIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVG 909 (1495)
T ss_pred HHHhcccccccccccccccccccc-----cccc-cccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcC
Confidence 876543211110000000000000 0000 0000000000000000000000011112223333333344443322
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc-Ccchh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 696 TYGVCG-TICAIIAGAQMPLFALGVSQALVAYYM-DWDTT----QREVKKITILFCCAAVITVIVHAIEHLSFGIMGERL 769 (1265)
Q Consensus 696 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 769 (1265)
...... +++..+ ...+......+|+ .|... ......|..+|++++++..++.+++.+++.+.+.++
T Consensus 910 ~~~~~~~~~~~~~--------~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~ 981 (1495)
T PLN03232 910 GLWVVMILLVCYL--------TTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHA 981 (1495)
T ss_pred cHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 111111 0011112222333 12111 122456778888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 770 TLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVAT 849 (1265)
Q Consensus 770 ~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~ 849 (1265)
+.++|++++++++++|++|||+ +++|+++||+++|++.++..++..+..++..++.+++++++++++++... ++.
T Consensus 982 ~~~lr~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~---~~~ 1056 (1495)
T PLN03232 982 AKRLHDAMLNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISL---WAI 1056 (1495)
T ss_pred HHHHHHHHHHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 9999999999999999999996 89999999999999999999999998888888888777777776665332 223
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000830 850 YPLIISGHISEKLFFQGYGGNL----SKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1265)
Q Consensus 850 ~pl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1265)
+|+.+.+......+ .+..++. ....+...+++.|+++|++|||+|+.++++.+++.+..+...+..+.......+
T Consensus 1057 ~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1135 (1495)
T PLN03232 1057 MPLLILFYAAYLYY-QSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRW 1135 (1495)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433333222222 2222223 333445568999999999999999999999888887777666554432222221
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHh-hhcc----cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000830 926 FYGISQFFIFSSYGLALWY-GSVLMG-KELA----SFKSVMK-SFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLD 998 (1265)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~-g~~l~~-~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~ 998 (1265)
....... .. .+.+++ +...+. .+.. .+...+. .+.+......++..+...+.+++..+.+++|+.++++
T Consensus 1136 l~~~~~~---~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~ 1211 (1495)
T PLN03232 1136 LTIRLET---LG-GVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYID 1211 (1495)
T ss_pred HHHHHHH---HH-HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111111 11 122222 222222 1211 1111111 2222333444566677778888999999999999998
Q ss_pred ccccccCC--C--CcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC
Q 000830 999 RKTQVIGD--I--GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074 (1265)
Q Consensus 999 ~~~~~~~~--~--~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~ 1074 (1265)
.+++.... . ..+.||..|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++
T Consensus 1212 ~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~ 1290 (1495)
T PLN03232 1212 LPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290 (1495)
T ss_pred CCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 77664321 1 11224567899999999999643 3469999999999999999999999999999999999999999
Q ss_pred cEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCC
Q 000830 1075 GKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERG 1154 (1265)
Q Consensus 1075 G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G 1154 (1265)
|+|+|||+|++++++++||++|++|||||+||+|||||||+++. +++|+|+|+|++.++++++|+++|+||||+|||+|
T Consensus 1291 G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1369 (1495)
T PLN03232 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 (1495)
T ss_pred ceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCC
Confidence 99999999999999999999999999999999999999999975 78999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEE
Q 000830 1155 VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIE 1234 (1265)
Q Consensus 1155 ~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive 1234 (1265)
.+|||||||||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++||||+||++|+|+|
T Consensus 1370 ~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhhhhhcCCcHHHHHHHHhhcc
Q 000830 1235 QGTHSSLVENEDGAYFKLINLQQRQ 1259 (1265)
Q Consensus 1235 ~Gt~~eLl~~~~g~f~~l~~~~~~~ 1259 (1265)
+|+|+||+++++|.|++|++.+...
T Consensus 1450 ~Gt~~eLl~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1450 YDSPQELLSRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred ECCHHHHHhCCCCHHHHHHHHhChh
Confidence 9999999996667999999887543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-152 Score=1532.94 Aligned_cols=1155 Identities=19% Similarity=0.250 Sum_probs=853.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 62 SIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYL 141 (1265)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~ 141 (1265)
++..++..++....|++++.+++.+.... .+ ......++..++++.++..++.....+.....+.++...++..+|
T Consensus 323 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~-~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy 398 (1522)
T TIGR00957 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPM-AP---DWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVY 398 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445557899998764321 01 110111112222222223333322333345677888888999999
Q ss_pred HHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 142 RSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGM 221 (1265)
Q Consensus 142 ~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~ 221 (1265)
+|+++++..++++ .++|+++|++++|++.+.++. ..+..++..++.+++++++++......+++.++++++++++..+
T Consensus 399 ~K~L~l~~~~~~~-~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~ 476 (1522)
T TIGR00957 399 RKALVITNSARKS-STVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAV 476 (1522)
T ss_pred HHHHhCChhhcCC-CCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 589999999999999998855 34444444444444444443332222345555666677777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 222 YAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWS 301 (1265)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1265)
+.++.++..++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+..++......+.......... .+
T Consensus 477 ~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~~ 554 (1522)
T TIGR00957 477 MAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPF--LV 554 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 8899999999999999999999999999999999999999999999999999888877766665443322211111 11
Q ss_pred HHHHHHHHHHH--hcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCC-C
Q 000830 302 LLVWYVSVVVH--KHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDK-L 378 (1265)
Q Consensus 302 ~~~~~g~~~~~--~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~-~ 378 (1265)
.++.++.+.+. ++.++.+.+|+.+..+.....|+..++..+..+.+++++.+|+.++++.+++... ......... .
T Consensus 555 ~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~~~~~~~~~~~ 633 (1522)
T TIGR00957 555 ALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD-SIERRTIKPGE 633 (1522)
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-cccccccCCCC
Confidence 22234455554 3567888888877655566678888999999999999999999999976543211 000011111 1
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhh
Q 000830 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1265)
Q Consensus 379 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1265)
.+.|+++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 634 ~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 699 (1522)
T TIGR00957 634 GNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------- 699 (1522)
T ss_pred CCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------
Confidence 2379999999999743 34699999999999999999999999999999999999999999999997
Q ss_pred heeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
+|+||+|+||+|++||+|||.+|.+. ++++..++++.+++.+++..+|+|++|.+|++|.+|||||||||+||||+|++
T Consensus 700 ~i~yv~Q~~~l~~~Ti~eNI~~g~~~-~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~ 778 (1522)
T TIGR00957 700 SVAYVPQQAWIQNDSLRENILFGKAL-NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778 (1522)
T ss_pred EEEEEcCCccccCCcHHHHhhcCCcc-CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 59999999999999999999999763 45666777777888899999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHH---HcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHH
Q 000830 539 PSILLLDEATSALDAESENSVQEALDR---VMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1265)
|+|+|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|+|++.|+|+++.++ ++.|.+
T Consensus 779 ~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~~~~ 857 (1522)
T TIGR00957 779 ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAE 857 (1522)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-chhHHH
Confidence 999999999999999999999998853 4568999999999999999999999999999999999999876 677887
Q ss_pred HHHHHHHhhhccCCCCC---C-CCCCCCc--------ccccccccCCC----cccc-cC--ccc-chhhhcccCCC-C--
Q 000830 616 LVQLQEAASQQSNSSQC---P-NMGRPLS--------IKFSRELSGTR----TSFG-AS--FRS-EKESVLSHGAA-D-- 672 (1265)
Q Consensus 616 ~~~~~~~~~~~~~~~~~---~-~~~~~~~--------~~~~~~~~~~~----~~~~-~~--~~~-~~~~~~~~~~~-~-- 672 (1265)
+...+...++.+..... . ....... .....+..... .+.. .. ... ........... .
T Consensus 858 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1522)
T TIGR00957 858 FLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETW 937 (1522)
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchh
Confidence 77544321111000000 0 0000000 00000000000 0000 00 000 00000000000 0
Q ss_pred ---CCCccchhhhHHHHHHHhhchhhHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHhhcCcch---hhhhHHHHHHH
Q 000830 673 ---ATEPATAKHVSAIKLYSMVRPDWTYGVCG-TICAIIAGAQMPL--FALGVSQALVAYYMDWDT---TQREVKKITIL 743 (1265)
Q Consensus 673 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 743 (1265)
.++.+..+.+.+. .|+.|+..+ ....++..+...+ ....+...+..+|.+... .......+..+
T Consensus 938 ~~~~~e~~~~g~v~~~-------~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~i 1010 (1522)
T TIGR00957 938 KLMEADKAQTGQVELS-------VYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSV 1010 (1522)
T ss_pred hhHHHHHHhcCcccHH-------HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHH
Confidence 0000111122222 223332221 1111110011110 111122222223332110 11122345567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000830 744 FCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQ 823 (1265)
Q Consensus 744 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~ 823 (1265)
|++++++..++.++..+++.+.+.++..++|++++++++++|++|||. +++|+++|||++|++.++..++..+..++.
T Consensus 1011 y~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s~Di~~id~~l~~~~~~~~~ 1088 (1522)
T TIGR00957 1011 YGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVDSMIPPVIKMFMG 1088 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888899999999999999999999999999996 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHH
Q 000830 824 NFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLE 903 (1265)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~ 903 (1265)
.++.+++.++++++.+|.+++++++.+++.+.......+..+...+......+...+++.|+++|++|||+|++++++.+
T Consensus 1089 ~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~ 1168 (1522)
T TIGR00957 1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIH 1168 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHH
Confidence 99998888888888888765544443333332222222222222222233345566899999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 904 LYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMG-KELASFKSVMKSFMVLIVTALAMGETLALVPD 982 (1265)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 982 (1265)
++.+..+...+..+.......+......++.. .+.++.+...+. .+.++.+.+..++.+......++..+...+.+
T Consensus 1169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~ 1245 (1522)
T TIGR00957 1169 QSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSE 1245 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887766554444444333333322 223333443332 46678888877777777788888889999999
Q ss_pred HHHHHHHHHHHHHHhcccccccC--CC--CcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCC
Q 000830 983 LLKGNQMAASVFEVLDRKTQVIG--DI--GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSG 1058 (1265)
Q Consensus 983 ~~~~~~~~~ri~~~~~~~~~~~~--~~--~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSG 1058 (1265)
++..+.+++|+.++.+.+++... +. ..+.||.+|.|+|+||+|+|+++. +++|+|+||+|+|||+||||||||||
T Consensus 1246 ~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsG 1324 (1522)
T TIGR00957 1246 METNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAG 1324 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCC
Confidence 99999999999999987665431 11 112346679999999999998542 46999999999999999999999999
Q ss_pred hHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHH
Q 000830 1059 KSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSF 1138 (1265)
Q Consensus 1059 KSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~ 1138 (1265)
||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++. ++++|+|+|+|++.++++++
T Consensus 1325 KSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~ 1403 (1522)
T TIGR00957 1325 KSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYSDEEVWWALELAHLKTF 1403 (1522)
T ss_pred HHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCCHHHHHHHHHHcCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999974 47999999999999999999
Q ss_pred HHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhh
Q 000830 1139 ISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTI 1218 (1265)
Q Consensus 1139 i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 1218 (1265)
|.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++++
T Consensus 1404 I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti 1483 (1522)
T TIGR00957 1404 VSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTI 1483 (1522)
T ss_pred HhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHHHh
Q 000830 1219 KNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256 (1265)
Q Consensus 1219 ~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~~~ 1256 (1265)
++||||+||++|+|+|+|+|+||++ .+|.|++|+++.
T Consensus 1484 ~~~DrIlVld~G~IvE~G~~~eLl~-~~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1484 MDYTRVIVLDKGEVAEFGAPSNLLQ-QRGIFYSMAKDA 1520 (1522)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHh-CCCHHHHHHHHc
Confidence 9999999999999999999999998 479999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-146 Score=1470.15 Aligned_cols=1156 Identities=18% Similarity=0.222 Sum_probs=856.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 60 LGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMA 139 (1265)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~ 139 (1265)
+++++.++..++....|++++.+++.+... .........+.+.+++..++..++.....+.....+.++...++..
T Consensus 248 ~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~----~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~ 323 (1560)
T PTZ00243 248 WQIPFKLLSDVCTLTLPVLLKYFVKFLDAD----NATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNAL 323 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666788888875321 1111100111112222222333333334444556666777778888
Q ss_pred HHHHHHhCCchhhcc-ccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 140 YLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALA 218 (1265)
Q Consensus 140 ~~~~l~~~~~~~f~~-~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~ 218 (1265)
+|+|+++++...+.. +.++|+++|.+++|++.+.+++. .+..++...+.+++++++++.+....+++.++++++++++
T Consensus 324 if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl 402 (1560)
T PTZ00243 324 IFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPL 402 (1560)
T ss_pred HHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999998877741 14789999999999999999974 4556677777777777777766666788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 219 GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFL 298 (1265)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1265)
..++.++..+..++..+..+++.+.+.|.++|||+||.++||+.+.+++++.++++.+..++.....++...+......+
T Consensus 403 ~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l 482 (1560)
T PTZ00243 403 NGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTL 482 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999888777766655444333333
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccc----cc-c----
Q 000830 299 SWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSK----AS-S---- 369 (1265)
Q Consensus 299 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~----~~-~---- 369 (1265)
.. ++.++.+.+.++.++++.+|+++..+..+..|+..++..+..+.++.+|++||.++++.++... +. .
T Consensus 483 ~~--~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~ 560 (1560)
T PTZ00243 483 MI--AVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWRE 560 (1560)
T ss_pred HH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccc
Confidence 22 2345667778899999999998877777778999999999999999999999999997543100 00 0
Q ss_pred ----cc--C-----C----------C---------------------------CCCCcccEEEEeEEEECCCC-------
Q 000830 370 ----KT--G-----R----------K---------------------------LDKLSGHIEFKDVSFCYPSR------- 394 (1265)
Q Consensus 370 ----~~--~-----~----------~---------------------------~~~~~~~i~~~~v~f~y~~~------- 394 (1265)
.. . . . .....+.+.++|++|+++..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1560)
T PTZ00243 561 QREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVE 640 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccc
Confidence 00 0 0 0 00011347788888775410
Q ss_pred ------------------------------CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEEC
Q 000830 395 ------------------------------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444 (1265)
Q Consensus 395 ------------------------------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 444 (1265)
.++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~ 720 (1560)
T PTZ00243 641 GGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE 720 (1560)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 12458999999999999999999999999999999999999999999874
Q ss_pred CeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChH
Q 000830 445 GNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1265)
Q Consensus 445 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1265)
++|+||+|+||+|++||+|||.++.+. ..+++.++.+.+++.++++.+|+|++|.+|++|.+||||
T Consensus 721 -------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGG 786 (1560)
T PTZ00243 721 -------------RSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGG 786 (1560)
T ss_pred -------------CeEEEEeCCCccCCCcHHHHHHcCChh-hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHH
Confidence 369999999999999999999998653 345667777778888999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH-HHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcc
Q 000830 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE-ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 525 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 603 (1265)
|||||+|||||+.+|+|||||||||+||+++++.+.+ ++....+|+|+|+|||+++.+..||+|++|++|++++.|+++
T Consensus 787 QkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~ 866 (1560)
T PTZ00243 787 QKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSA 866 (1560)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999887765 444455689999999999999999999999999999999999
Q ss_pred hhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhccc-C----CCCCCCccc
Q 000830 604 ELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSH-G----AADATEPAT 678 (1265)
Q Consensus 604 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 678 (1265)
++++. +.|..+........+..+.....+.. ..+............... ............ . .....+++.
T Consensus 867 ~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~e~~~ 942 (1560)
T PTZ00243 867 DFMRT--SLYATLAAELKENKDSKEGDADAEVA-EVDAAPGGAVDHEPPVAK-QEGNAEGGDGAALDAAAGRLMTREEKA 942 (1560)
T ss_pred HHHhC--hHHHHHHHhhcccccccccccccccc-cccccccccccccccccc-cccccccccccccccccchhhhHHHHh
Confidence 99864 45766654322111100000000000 000000000000000000 000000000000 0 000001111
Q ss_pred hhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhc-Ccch--hhhhHHHHHHHHHHHHHHHH
Q 000830 679 AKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVS---QALVAYYM-DWDT--TQREVKKITILFCCAAVITV 752 (1265)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~ 752 (1265)
.+.+.+.. |++|+........ .+.+++.+.+. .....+|+ .|.. .......+..+|+++.++..
T Consensus 943 ~g~v~~~~-------y~~Y~~~~g~~~~---~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~ 1012 (1560)
T PTZ00243 943 SGSVPWST-------YVAYLRFCGGLHA---AGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGT 1012 (1560)
T ss_pred cCcccHHH-------HHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHH
Confidence 12222222 2222221110000 00111111111 11222222 1111 11122345666777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 753 IVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASF 832 (1265)
Q Consensus 753 i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~ 832 (1265)
++..++.+.....+.+...++|.++|++++++|+.|||+ +++|+++|||++|++.++..++..+..++..++.+++.+
T Consensus 1013 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1013 FSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788889999999999999999999996 899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHH
Q 000830 833 VIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSK----AYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRE 908 (1265)
Q Consensus 833 ~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~ 908 (1265)
+++++.+|.+. ++++|+.++...+... +....++.++ ..+...+++.|++.|++|||+|+.++++.+++.+.
T Consensus 1091 i~~~~~~p~~~---~~~i~~~~~~~~i~~~-~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~ 1166 (1560)
T PTZ00243 1091 LVTSASQPFVL---VALVPCGYLYYRLMQF-YNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRR 1166 (1560)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHH
Confidence 88888887433 3334444443333332 2333344443 34455689999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 909 LVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVL--MGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKG 986 (1265)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 986 (1265)
.+...+..+.......+......++..+...+..+++... ...+..+.+.+..++.+......++..+...+.+++..
T Consensus 1167 ~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~ 1246 (1560)
T PTZ00243 1167 LDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEAD 1246 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887766555555544444444444433333444332 22334566666555556666677788888889999999
Q ss_pred HHHHHHHHHHhccccccc-C--------------------------C-CCc---ccCCCcccEEEEeEEEECCCCCCccc
Q 000830 987 NQMAASVFEVLDRKTQVI-G--------------------------D-IGE---ELTNVEGTIELRGVHFSYPSRPEVVI 1035 (1265)
Q Consensus 987 ~~~~~ri~~~~~~~~~~~-~--------------------------~-~~~---~~~~~~g~I~~~~Vsf~Y~~~~~~~v 1035 (1265)
+.+++|+.++++..++++ . . ... +.++..|.|+|+||+|+|++. .++|
T Consensus 1247 ~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~v 1325 (1560)
T PTZ00243 1247 MNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLV 1325 (1560)
T ss_pred HHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCce
Confidence 999999999986433211 0 0 000 112345889999999999753 3469
Q ss_pred ccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhc
Q 000830 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENIL 1115 (1265)
Q Consensus 1036 L~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~ 1115 (1265)
|+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||+
T Consensus 1326 L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNId 1405 (1560)
T PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD 1405 (1560)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC-CCEEEEecCcCCCCHHHHHH
Q 000830 1116 YGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN-PEILLLDEATSALDVESERV 1194 (1265)
Q Consensus 1116 ~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~-p~ILlLDEaTSaLD~~te~~ 1194 (1265)
++ ++++|+|+|+|++.++++++|.++|+||||.|||+|.||||||||||||||||+++ |+|||||||||+||++||+.
T Consensus 1406 p~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~ 1484 (1560)
T PTZ00243 1406 PF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQ 1484 (1560)
T ss_pred cc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHH
Confidence 85 57899999999999999999999999999999999999999999999999999996 89999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHHHhhc
Q 000830 1195 VQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQR 1258 (1265)
Q Consensus 1195 I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~~~~~ 1258 (1265)
|+++|++.+++||+|+||||++++.+||+|+||++|+|+|+|+|+||+++++|.|++|++.+..
T Consensus 1485 Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1485 IQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred HHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999999999999998678999999987754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-144 Score=1451.64 Aligned_cols=1139 Identities=18% Similarity=0.244 Sum_probs=824.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 000830 70 VSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDI 149 (1265)
Q Consensus 70 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~ 149 (1265)
++....|++++.+++.+.... ... ......+++.++++.++..++.....+.....+.++...+...+|+|+++++.
T Consensus 94 ~~~~~~P~ll~~li~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~ 170 (1490)
T TIGR01271 94 ATKAVQPLLLGRIIASYDPFN--APE-REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSS 170 (1490)
T ss_pred HHHHHHHHHHHHHHHHhccCC--CCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 333444457889988763211 000 01111122222222223333333344444455666666666677999999999
Q ss_pred hhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 150 SLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGL 229 (1265)
Q Consensus 150 ~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~ 229 (1265)
..+++ .++|+++|++++|++.+.+++... ..+....+.+++++++++.+....+++.++++++++++..+++++..+.
T Consensus 171 ~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~ 248 (1490)
T TIGR01271 171 RVLDK-ISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPY 248 (1490)
T ss_pred HHhcC-CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 589999999999999999976543 3444555555666666666555677888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 230 IARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV 309 (1265)
Q Consensus 230 ~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 309 (1265)
.++.++..+++.+.++|.++|||+||+|+||+.+.+++++.++++.+..++..........+..+... .+.++.++.+
T Consensus 249 ~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~y 326 (1490)
T TIGR01271 249 RDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGF--FVVFLSVVPY 326 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877665444333222222 2334455666
Q ss_pred HHHhcccchhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCcccEEEEeEE
Q 000830 310 VVHKHISNGGESFTTMLNVVIAGLSLG-QAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVS 388 (1265)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 388 (1265)
.+.++ ++.+.+|+++.++..+..++. .++..+..+.++.++++||.++++.++.... . . ......++++|++
T Consensus 327 ~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~-~---~--~~~~~~i~~~~~~ 399 (1490)
T TIGR01271 327 ALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL-E---Y--NLTTTEVEMVNVT 399 (1490)
T ss_pred HHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-c---c--cCCCCceEEecce
Confidence 66544 577888887655555555653 5777889999999999999999975432111 0 0 0112359999999
Q ss_pred EECCCCC-------------------------------CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 000830 389 FCYPSRP-------------------------------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437 (1265)
Q Consensus 389 f~y~~~~-------------------------------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~ 437 (1265)
|+|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|+
T Consensus 400 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~ 479 (1490)
T TIGR01271 400 ASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS 479 (1490)
T ss_pred EecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 9995310 135899999999999999999999999999999999999999
Q ss_pred cceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCC
Q 000830 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGER 517 (1265)
Q Consensus 438 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 517 (1265)
+|+|.++| +|+||+|+||+|++||+|||.||.+ .+.++..++++.+++.+++..+|+|++|.+|++
T Consensus 480 ~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~ 545 (1490)
T TIGR01271 480 EGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545 (1490)
T ss_pred CceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCc
Confidence 99999998 4999999999999999999999975 334445556666677889999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH-HHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEE
Q 000830 518 GIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE-ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1265)
Q Consensus 518 g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i 596 (1265)
|.+|||||||||+||||++++|+|||||||||+||+++++.+.+ ++.++.+++|+|+|||+++.+..||+|++|++|+|
T Consensus 546 g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVC 625 (1490)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999987 56777789999999999999999999999999999
Q ss_pred EEeeCcchhccCCchHHHHHHHHHHH-hh---hc------c-------C-CC-----CCC---C--CCCCCc-ccc----
Q 000830 597 VKTGSHEELISNPNSAYAALVQLQEA-AS---QQ------S-------N-SS-----QCP---N--MGRPLS-IKF---- 643 (1265)
Q Consensus 597 ~~~g~~~~l~~~~~~~~~~~~~~~~~-~~---~~------~-------~-~~-----~~~---~--~~~~~~-~~~---- 643 (1265)
++.|+++++.+. ++.|.+....... .+ +. + . .. +.. + ...+.. ...
T Consensus 626 ~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1490)
T TIGR01271 626 YFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSI 704 (1490)
T ss_pred EEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999875 5566555431100 00 00 0 0 00 000 0 000000 000
Q ss_pred ------------------cc----ccc--CCCcc-----------------ccc-----------Ccc-------cc---
Q 000830 644 ------------------SR----ELS--GTRTS-----------------FGA-----------SFR-------SE--- 661 (1265)
Q Consensus 644 ------------------~~----~~~--~~~~~-----------------~~~-----------~~~-------~~--- 661 (1265)
.. +.. ..... ... ... ..
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1490)
T TIGR01271 705 ILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNR 784 (1490)
T ss_pred cccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccc
Confidence 00 000 00000 000 000 00
Q ss_pred -----hh---hhc------------c-------c-CCC-------C-----------CCCccchhhhHHHHHHHhhchhh
Q 000830 662 -----KE---SVL------------S-------H-GAA-------D-----------ATEPATAKHVSAIKLYSMVRPDW 695 (1265)
Q Consensus 662 -----~~---~~~------------~-------~-~~~-------~-----------~~~~~~~~~~~~~~~~~~~~~~~ 695 (1265)
++ ... . . ... + .+++...+.+.+. .|+
T Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~-------vY~ 857 (1490)
T TIGR01271 785 GENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWN-------TYL 857 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHH-------HHH
Confidence 00 000 0 0 000 0 0000001112221 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Ccchh---------h--------------hhHHHH-HHHHHHHHHH
Q 000830 696 TYGVCGTICAIIAGAQMPLFALGVSQALVAYYM-DWDTT---------Q--------------REVKKI-TILFCCAAVI 750 (1265)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~--------------~~~~~~-~~~~~~~~~~ 750 (1265)
.|+..+.....+...+...+...+...+..+|+ .|... . .....| .++|++++++
T Consensus 858 ~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1490)
T TIGR01271 858 RYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADS 937 (1490)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHH
Confidence 333221100000000001111122233333443 22110 0 011122 3344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 751 TVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTA 830 (1265)
Q Consensus 751 ~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~ 830 (1265)
..++.+++.+++.+.+.+.+.++|.+++++++++|++||++ +++|+++|||++|++.++..++..+..++..++.+++
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 938 VLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHH
Q 000830 831 SFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSK----AYLKANMLAAEAVSNIRTVAAFCSEDKVLELYS 906 (1265)
Q Consensus 831 ~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~ 906 (1265)
.++++++++|.+.+ +++|+++++.++...+.+ ..++.++ ..+...+++.|++.|+.|||+|++++++.+++.
T Consensus 1016 ~l~~i~~~~p~l~l---~~~~l~~~~~~~~~~~~~-~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~ 1091 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFI---AAIPVAVIFIMLRAYFLR-TSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFH 1091 (1490)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHH
Confidence 98888888887544 344444443333333332 2334333 334456899999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 907 RELVEPSKRSFIRGQIAGIFYGISQFFIFSSYG--LALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLL 984 (1265)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1265)
+..+...+..+.......+......++...... +.++++... ...+.+..++.+.......+..+...+.++.
T Consensus 1092 ~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~~-----~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le 1166 (1490)
T TIGR01271 1092 KALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQ-----DGEGEVGIILTLAMNILSTLQWAVNSSIDVD 1166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998876554443333222222222222111111 112222221 2222222223333344445566667778888
Q ss_pred HHHHHHHHHHHHhcccccccCC-C-----------------CcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCC
Q 000830 985 KGNQMAASVFEVLDRKTQVIGD-I-----------------GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAG 1046 (1265)
Q Consensus 985 ~~~~~~~ri~~~~~~~~~~~~~-~-----------------~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~G 1046 (1265)
..+.+++|+.++.+.+++.... . .++.||..|.|+|+||+|+|++. .+++|+|+||+|+||
T Consensus 1167 ~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~G 1245 (1490)
T TIGR01271 1167 GLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGG 1245 (1490)
T ss_pred HHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCC
Confidence 9999999999999776553211 0 01124567899999999999853 457999999999999
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHH
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEV 1126 (1265)
Q Consensus 1047 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei 1126 (1265)
|+||||||||||||||+++|+|+|+ ++|+|+|||+||++++++++|++|+||||||+||+||||+||++. ..++|+++
T Consensus 1246 ekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdeei 1323 (1490)
T TIGR01271 1246 QRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEI 1323 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHHH
Confidence 9999999999999999999999997 799999999999999999999999999999999999999999985 46899999
Q ss_pred HHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCc
Q 000830 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR 1206 (1265)
Q Consensus 1127 ~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~ 1206 (1265)
|+|++.+++++++.++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++.+++|
T Consensus 1324 ~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~ 1403 (1490)
T TIGR01271 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC 1403 (1490)
T ss_pred HHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHHHhhcc
Q 000830 1207 TTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQRQ 1259 (1265)
Q Consensus 1207 TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~~~~~~ 1259 (1265)
|||+||||++++.+||||+||++|+|+|.|+|++|++ .+|.|++|++.+.+.
T Consensus 1404 TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1404 TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAADRL 1455 (1490)
T ss_pred EEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhChh
Confidence 9999999999999999999999999999999999997 689999999877643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-110 Score=979.21 Aligned_cols=574 Identities=40% Similarity=0.614 Sum_probs=537.4
Q ss_pred HhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000830 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (1265)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1265)
..+++++.|.++. |+.+..+.++.++......+.|.+.|+++|.+.... .....+...+..+.++.++..++.++
T Consensus 133 ~~~~rl~~l~~~~-~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~----~~~~~~~~~~~~l~~l~~~~a~~~~~ 207 (716)
T KOG0058|consen 133 TLLKRLLGLLKPE-WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD----DSADALKRACTILLGLFLIGALANAI 207 (716)
T ss_pred hHHHHHHHHhchh-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999876 445677777777777778888889999999876511 11334445566677778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1265)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 200 (1265)
+.+++.++++++..++|.++|+++++++++|||. +.+||++||++.|++.+.+.++..+...+.+.+..++++++|+++
T Consensus 208 r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~ 286 (716)
T KOG0058|consen 208 RGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL 286 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 9999999999999999999999999999999998 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 000830 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280 (1265)
Q Consensus 201 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 280 (1265)
||+|+++.++.+|+++++..+++++.++..++.|++.++.+...+|.+++|||||+|+.|+.+.++|.+..++..+..+|
T Consensus 287 S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k 366 (716)
T KOG0058|consen 287 SWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKK 366 (716)
T ss_pred hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 000830 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360 (1265)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 360 (1265)
.+...+++.....+..++..+.+++||++++..|.++.|.+.++++|......++..+...++.++++..|.+|+||++|
T Consensus 367 ~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~d 446 (716)
T KOG0058|consen 367 EAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMD 446 (716)
T ss_pred HHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcce
Q 000830 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1265)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 440 (1265)
++|..+.. ....+....|.|+|+||+|+||.+++.++|+|+||+|+|||+||+|||||+||||++++|.+||+|++|+
T Consensus 447 r~P~i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~ 524 (716)
T KOG0058|consen 447 RKPRIPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524 (716)
T ss_pred cCCCCCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 99887653 1122235789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCC
Q 000830 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1265)
Q Consensus 441 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1265)
|.+||+||+++++.+||++||+|.|||.||++||+|||.||.+++++|++.+||++|++|+||.++|+||||.|||+|.+
T Consensus 525 IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 525 ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEee
Q 000830 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 521 LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 600 (1265)
|||||||||||||||++||.||||||||||||+++|..|+++|.++++++|||+|+|||+|+++||+|+|+++|+++|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccCCchHHHHHHHHHHH
Q 000830 601 SHEELISNPNSAYAALVQLQEA 622 (1265)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~~~~~ 622 (1265)
+|+||++++++.|+++++.|..
T Consensus 685 ~h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 685 THDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred cHHHHhhCcccHHHHHHHHhcc
Confidence 9999999978999999987753
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-109 Score=969.84 Aligned_cols=573 Identities=36% Similarity=0.592 Sum_probs=543.9
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 683 SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1265)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 762 (1265)
..++++.+.+++|+++..+..+.++......+.+.+.+++++..+. ..............+.++.++..++.+++.+++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~-~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISE-GDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999888888877788888888887765 112233444556777888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1265)
Q Consensus 763 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 842 (1265)
.++++++..++|..+|+++++++++|||. |.+|++++|+++|...+.+.++..+...+.+++..++++.+|+.++|.+
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 99999999999999999999999999997 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000830 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922 (1265)
Q Consensus 843 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1265)
+++.+..+|++.+...++.+++++.+++.+++..+++....|.+.+++|||+|+.|++..++|.+.+++..+...+.+..
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000830 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1265)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 1002 (1265)
.+++++..++........++|+|+.++..+.++.+++..++++......++..+...+.++.++..+++|+++++|++|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCcccC-CCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECC
Q 000830 1003 VIGDIGEELT-NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081 (1265)
Q Consensus 1003 ~~~~~~~~~~-~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1081 (1265)
.+.. +...| ..+|.|+|+||+|+||.||+.+||||+||+|+|||+||+||||||||||++++|.|||+|++|+|++||
T Consensus 451 i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG 529 (716)
T KOG0058|consen 451 IPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG 529 (716)
T ss_pred CCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 7655 43333 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1082 IDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1082 ~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
+||++++.++||++||+|.|||+||+|||+|||.||.+.+++|||.+|+++|++|+||.++|+||||.|||+|.+|||||
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhh
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||||||||||+|||+||||||||||||+++|..||++|.+..+++|||+|||||+||++||+|+|+++|+|+|.|+|+||
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eL 689 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDEL 689 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHhhcc
Q 000830 1242 VENEDGAYFKLINLQQRQ 1259 (1265)
Q Consensus 1242 l~~~~g~f~~l~~~~~~~ 1259 (1265)
+++++|.|++|+++|...
T Consensus 690 l~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 690 LSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred hhCcccHHHHHHHHhccc
Confidence 998889999999998754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-103 Score=967.48 Aligned_cols=579 Identities=43% Similarity=0.710 Sum_probs=543.1
Q ss_pred hhHhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 000830 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (1265)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1265)
.+.++++++++.+| .|.++++|++++++.|+..|++.++++.++..+.... ++........+++++++++++..++.
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~--~~~~~~~~~~~al~f~~l~~~~~i~~ 724 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPD--DDELKREVRAWALIFLGLGIVSGITN 724 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999987 5788899999999999999999999999998875321 12222222337788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (1265)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 198 (1265)
+++++++.+.++++..++|..+|+++++++.+|||...++|.+.+|+.+|...++..+.+.+..++.++..+++++++.|
T Consensus 725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999644449999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 000830 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (1265)
Q Consensus 199 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (1265)
+++|+|+++++++.|++++..+...+.+.....+..+...+.+.++.|++++||||++|+.|+++.+.|.+..++..+..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000830 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358 (1265)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~ 358 (1265)
.+.+.+.++..++.+.+.++.+++.+|||++++..|.+++..++..++.+.+..+.+++.....+.+.+|+.|+.+++++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888888888899999999999999999999
Q ss_pred hccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 000830 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438 (1265)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 438 (1265)
+|++|++++..+.+...++.+|+|+|+||+|+||.+|+.++|+|+||++++||++||||||||||||++.||.|+|+|++
T Consensus 965 ~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 965 LDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred hcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 99998776544334445667899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCC
Q 000830 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (1265)
Q Consensus 439 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 518 (1265)
|.|.|||+|++++++++||++||.|+|||.||++||||||+||.+.++.+|+++||+.|++|+||.+||+||||.+||+|
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 99999999999999999999999999999999999999999996668999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEE
Q 000830 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598 (1265)
Q Consensus 519 ~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 598 (1265)
.+||||||||||||||++|||+||||||+|||||.++|+.+|++|++.+.|||+|+|||||+++++||.|+|++||+|+|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCcchhccCCchHHHHHHHHHH
Q 000830 599 TGSHEELISNPNSAYAALVQLQE 621 (1265)
Q Consensus 599 ~g~~~~l~~~~~~~~~~~~~~~~ 621 (1265)
+|||++|+++ ++.|.+|++.|.
T Consensus 1205 ~GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1205 QGTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred cccHHHHHhC-CCchHHHhhhcc
Confidence 9999999995 999999998764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-95 Score=894.18 Aligned_cols=609 Identities=29% Similarity=0.398 Sum_probs=546.2
Q ss_pred CCCCCCCCcccccCcccCCCCCCCCcchhhhhHHHhhhhhHhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000830 1 MSTPAVGSFPVNDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFG 80 (1265)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1265)
+.||+.|....+.++..+.|++......+..+.+....++..+.+++..+.++++. +.-.++.+++..++....|+++.
T Consensus 100 v~dp~~g~~~l~~~e~~~~~tg~~l~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-l~~v~~~sl~l~i~~l~~p~~~q 178 (709)
T COG2274 100 VLDPAKGIRRLSLEEFEKLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRL-LFEVLLASLLLQLLALATPLFSQ 178 (709)
T ss_pred EEeCCCCcEEcCHHHHHHhhheeEEEEecccccccccccccchHhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999976666655544222233334566666666655443 33334445555555555556889
Q ss_pred HHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhH
Q 000830 81 KLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160 (1265)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~ 160 (1265)
.++|.+.... ..+.+....+.++++++...++.+++.++..+++.++..++-.++|+|++++|++||++ +++||
T Consensus 179 ~viD~Vl~~~-----~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~-r~~Ge 252 (709)
T COG2274 179 IVIDKVLPDA-----SRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGE 252 (709)
T ss_pred HHHHhhhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC-CChhh
Confidence 9999876432 23444455566666777788899999999999999999999999999999999999997 59999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKA 240 (1265)
Q Consensus 161 l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1265)
+++|+ +|.+.|+++++..+...+.++.++++.+++|++++|.|++++++.+|+++++..++.+.+++..++..+..++.
T Consensus 253 ~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~ 331 (709)
T COG2274 253 IISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQ 331 (709)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhH
Q 000830 241 GEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE 320 (1265)
Q Consensus 241 ~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~ 320 (1265)
++...|++.||++||+.+.|..+..+|++...+..+...+..+.......+..++..+..++++|+|++++.+|.+|.|.
T Consensus 332 ~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~ 411 (709)
T COG2274 332 QSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQ 411 (709)
T ss_pred hhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccc
Q 000830 321 SFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIF 400 (1265)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l 400 (1265)
++++.+.......|+..+...+..+++++.+.+|+.++++.++|.+.... ....++..|+|+|+||+|+|+.++ .++|
T Consensus 412 LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~~-~~vL 489 (709)
T COG2274 412 LVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKLQGEIEFENVSFRYGPDD-PPVL 489 (709)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-cccccccCceEEEEEEEEEeCCCC-cchh
Confidence 99987777777789999999999999999999999999998877543211 134456788999999999998653 4799
Q ss_pred cceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhcc
Q 000830 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480 (1265)
Q Consensus 401 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~ 480 (1265)
+|+||+|++||++||||+||||||||+|+|+|+|+|++|+|++||.|+.++++.++|++||||+||+.||+|||+|||++
T Consensus 490 ~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l 569 (709)
T COG2274 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIAL 569 (709)
T ss_pred hceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHH
Q 000830 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560 (1265)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~ 560 (1265)
+.|+.++|++++||+.+++|+||.++|.||+|.+||+|.+|||||||||+|||||+++|+||||||||||||++||+.|.
T Consensus 570 ~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~ 649 (709)
T COG2274 570 GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649 (709)
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHHH
Q 000830 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1265)
Q Consensus 561 ~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1265)
+.|.+..+|+|+|+||||++++++||+|+||++|+|+++|+|+|+++. ++.|.++++.|
T Consensus 650 ~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 650 QNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred HHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 999999999999999999999999999999999999999999999998 89999998754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-91 Score=859.31 Aligned_cols=562 Identities=31% Similarity=0.509 Sum_probs=509.4
Q ss_pred HHHHHhhchhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 685 IKLYSMVRPDWTYGVCGTICAI---IAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLS 761 (1265)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 761 (1265)
.+++....++|+.+.-.++.++ +.++..|++. ..+++.... ....+......+.+++.+++..++..++.++
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~---q~viD~Vl~--~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~ 217 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFS---QIVIDKVLP--DASRSTLTVLAIGLLLAALFEALLRLLRTYL 217 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhc--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566655443333333 3333444433 222222221 1122334445666777778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 762 FGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWR 841 (1265)
Q Consensus 762 ~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 841 (1265)
+...+.++...+-.++|+|+++.|++||++ +++|++++|+. |.+.+++++.......+..+.+.++.++++++++|.
T Consensus 218 ~~~~~~rld~~l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~ 294 (709)
T COG2274 218 IAHLGKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWK 294 (709)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcCcHHHccC--CChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 78999999986 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 000830 842 ITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQ 921 (1265)
Q Consensus 842 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 921 (1265)
+++++++.+|+.++..++..+++++..++..+..+..++...|++.|++|||+.+.|+++..+|++...+..+..++...
T Consensus 295 L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~ 374 (709)
T COG2274 295 LTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK 374 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000830 922 IAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT 1001 (1265)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~ 1001 (1265)
...+...+..++......+++|+|+.++..+.+|.|+++++.+.......++..+...+.+++....+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~ 454 (709)
T COG2274 375 LALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP 454 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCC-CcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEEC
Q 000830 1002 QVIGDI-GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVD 1080 (1265)
Q Consensus 1002 ~~~~~~-~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1080 (1265)
|.+.+. ....++..|+|+|+||+|+|+.++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++|
T Consensus 455 E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 455 EQEGDKTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred ccccccccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 865443 234566789999999999998653 479999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChh
Q 000830 1081 GIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160 (1265)
Q Consensus 1081 G~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1160 (1265)
|+|+++++++.+|++|+|||||++||+|||||||+++.|+.++||+++||+.+++|+||.++|.||||+|||+|.+||||
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhh
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSS 1240 (1265)
Q Consensus 1161 QkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~e 1240 (1265)
|||||+|||||++||+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+||++|+|+|+|+|+|
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcHHHHHHHHh
Q 000830 1241 LVENEDGAYFKLINLQ 1256 (1265)
Q Consensus 1241 Ll~~~~g~f~~l~~~~ 1256 (1265)
|++ .+|.|+++|+.|
T Consensus 694 ll~-~~g~y~~l~~~q 708 (709)
T COG2274 694 LLA-QGGLYARLYQQQ 708 (709)
T ss_pred HHH-hcChHHHHHhcc
Confidence 999 599999999876
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-87 Score=840.02 Aligned_cols=568 Identities=21% Similarity=0.258 Sum_probs=484.3
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (1265)
Q Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1265)
.+++++++.+++++. ++++++++++..++.+..|++++.++|.+.... .. ...+..+...++++.++..++.++.
T Consensus 9 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (588)
T PRK11174 9 LTRWLKQQSKPAKRW-LNLSILLGFLSGLLLIAQAWLLATILQALIIEN---IP-REALLPPFILLILLFVLRALLAWLR 83 (588)
T ss_pred hhHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Cc-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888877554 566777778888888888889999999764211 01 1122223333444555667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARV 201 (1265)
Q Consensus 122 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 201 (1265)
.++....+.++..++|.++|+|++++|+++|++ .++|++++|+++|++.+++++...++.++..++.+++.++++++++
T Consensus 84 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (588)
T PRK11174 84 ERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPIN 162 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999997 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 000830 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (1265)
Q Consensus 202 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 281 (1265)
|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+...+.
T Consensus 163 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 242 (588)
T PRK11174 163 WAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEV 242 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH---------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000830 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGES---------FTTMLNVVIAGLSLGQAAPDITAFIRAKAAA 352 (1265)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 352 (1265)
.+..+...++..++..+..+++++++++.+. |.++.|.+ +..+.+......|+..+...+..+.+++++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~ 321 (588)
T PRK11174 243 LRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAA 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666655555555455455555443 66676643 1111222233567888888899999999999
Q ss_pred HHHHHHhccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHh
Q 000830 353 YPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 353 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 432 (1265)
+|+.++++.+++.+.. .....+....+.|+|+||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|
T Consensus 322 ~ri~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 322 ESLVTFLETPLAHPQQ-GEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred HHHHHHHcCCCcccCC-CccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 9999999865432111 110111112356999999987763 3469999999999999999999999999999999999
Q ss_pred ccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccc
Q 000830 433 FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512 (1265)
Q Consensus 433 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 512 (1265)
+| |++|+|.+||+|+++++.+++|++|+||||+|+||++||+|||++|+|+++++++++||+.+++++++..||+||||
T Consensus 399 ~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 399 FL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred CC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEe
Q 000830 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (1265)
Q Consensus 513 ~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~ 592 (1265)
.+||+|.+|||||||||+|||||++||+|||||||||+||+++|+.|+++|+++.+++|+|+||||+++++.||+|++|+
T Consensus 478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557 (588)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCEEEEeeCcchhccCCchHHHHHHHHHH
Q 000830 593 GRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1265)
Q Consensus 593 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1265)
+|+|+|+|+|+||+++ ++.|++++..|.
T Consensus 558 ~G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 558 DGQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred CCeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 9999999999999987 789999997764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-86 Score=884.44 Aligned_cols=571 Identities=29% Similarity=0.448 Sum_probs=489.5
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (1265)
Q Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1265)
.+.+++++.+++++ .++++++++++.+++.|+++++++.+++.+... .........+.+++++++++.+++.+++
T Consensus 812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~i~~~~~~~l~ 886 (1466)
T PTZ00265 812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDF----ANLEANSNKYSLYILVIAIAMFISETLK 886 (1466)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666655544 357778888889999999999999999976421 1111223345566667777788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc-ccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDT-EASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1265)
Q Consensus 122 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~-~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 200 (1265)
.++..+.++++..++|.++|++++++|++||++ ++++|++++|+++|++.+++++...+..++..++.+++++++++++
T Consensus 887 ~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 887 NYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999984 3579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Q 000830 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLI-AR-----------------VRKSYVKAGEIAEEVIGNVRTVQAFAGEDK 262 (1265)
Q Consensus 201 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~ 262 (1265)
+|.++++++.++|++ ...+.++.+... .+ .++..++.+..++|.++|+++||+|+.|+.
T Consensus 967 ~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 1043 (1466)
T PTZ00265 967 CPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDY 1043 (1466)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHH
Confidence 999887765443333 333344332211 11 223456778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHH
Q 000830 263 AVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDI 342 (1265)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 342 (1265)
+.++|++..+...+...+...+.++..++..++..+..++++|+|++++..|.++.|.+++++++++....++..+...+
T Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~ 1123 (1466)
T PTZ00265 1044 FCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLK 1123 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888888888899999999999999999998887766555545677778889
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccCCC---CCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCC
Q 000830 343 TAFIRAKAAAYPIFEMIERDTMSKASSKTGRK---LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGS 419 (1265)
Q Consensus 343 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~s 419 (1265)
..+.+++++++|++++++.+++.+.....+.. .+...+.|+|+||+|+||++++.++|+|+||+|++|+++||||||
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~S 1203 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCC
Confidence 99999999999999999876543211111111 123457899999999998766668999999999999999999999
Q ss_pred CCcHHHHHHHHHhccCC------------------------------------------------------CcceEEECC
Q 000830 420 GSGKSTVISLIERFYEP------------------------------------------------------LSGEILLDG 445 (1265)
Q Consensus 420 GsGKSTl~~ll~~~~~~------------------------------------------------------~~G~i~~~g 445 (1265)
|||||||+++|+|+|+| ++|+|++||
T Consensus 1204 GsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG 1283 (1466)
T PTZ00265 1204 GSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283 (1466)
T ss_pred CCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECC
Confidence 99999999999999999 699999999
Q ss_pred eeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 446 NNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 446 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
+|+++++.+++|++||||+|||+||++||+|||+||+|+++++++++||+.+++++||..||+||||.|||+|.+|||||
T Consensus 1284 ~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQ 1363 (1466)
T PTZ00265 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQ 1363 (1466)
T ss_pred EEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeC----CEEE-E
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQG----RKIV-K 598 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~----G~i~-~ 598 (1265)
||||||||||+++|+||||||||||||+++|+.|+++|.++. +++|+|+||||++++++||+|+||++ |+++ |
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e 1443 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQA 1443 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEE
Confidence 999999999999999999999999999999999999999884 69999999999999999999999999 9955 8
Q ss_pred eeCcchhccCCchHHHHHHHHH
Q 000830 599 TGSHEELISNPNSAYAALVQLQ 620 (1265)
Q Consensus 599 ~g~~~~l~~~~~~~~~~~~~~~ 620 (1265)
+|+|+||+++.++.|+++++.|
T Consensus 1444 ~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1444 HGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred ecCHHHHHhcCCChHHHHHhhc
Confidence 9999999974479999998765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-86 Score=822.85 Aligned_cols=562 Identities=35% Similarity=0.525 Sum_probs=502.0
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1265)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1265)
+++++.+.+ .+ .+.++.++.++..++....|.+++.++|.+... ......+..+++++.++..++.++..
T Consensus 4 ~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~ 73 (567)
T COG1132 4 LRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-------LGELLELLLLLLLLALLGGVLRALQS 73 (567)
T ss_pred HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 34 456666677777777777777889999876511 12223334444555556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1265)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 202 (1265)
++..+.+.++..++|.++|++++++|+++|++ .++|++++|+++|++.++..+......+...+..+++.+++++..+|
T Consensus 74 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (567)
T COG1132 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSW 152 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCc-CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888889999999999999999999999998 58899999999999999999998866666678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000830 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1265)
Q Consensus 203 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1265)
.+++++++..|++.+...++.++.++..++.++..++.++.+.|.++|+++||+|+.++.+.+++++..++..+...+..
T Consensus 153 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (567)
T COG1132 153 RLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS 232 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998899888899999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Q 000830 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1265)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 362 (1265)
...+...++..++..+...+++++|.+.+..+.++.|.+.+++.+......|+..+...+..+..+..+++|++++++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~ 312 (567)
T COG1132 233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEE 312 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888888999999999999999999999888888888778899999999999999999999999999876
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEE
Q 000830 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1265)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 442 (1265)
++..+... ......+.|+|+||+|+|++ ++++|+|+||+++|||++||||||||||||++++|+|+|+|++|+|+
T Consensus 313 ~~~~~~~~---~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 313 PEVEDPPD---PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred ccccCCCC---CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 54332111 12334567999999999974 35699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCC
Q 000830 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1265)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1265)
+||+|+++++.+++|++|++|||||+||++||+|||.+|+|+++++|+++||+.++++|||+++|+||||.+||+|.+||
T Consensus 388 idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LS 467 (567)
T COG1132 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLS 467 (567)
T ss_pred ECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCc
Q 000830 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1265)
Q Consensus 523 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 602 (1265)
||||||||||||+++||||||||||||+||++||+.|++++.++.++||+|+||||++++++||+|+||++|+|+|.|+|
T Consensus 468 gGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h 547 (567)
T COG1132 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTH 547 (567)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred chhccCCchHHHHHHHHHH
Q 000830 603 EELISNPNSAYAALVQLQE 621 (1265)
Q Consensus 603 ~~l~~~~~~~~~~~~~~~~ 621 (1265)
+||+++ ++.|+++++.|.
T Consensus 548 ~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 548 EELLAK-GGLYARLYQAQG 565 (567)
T ss_pred HHHHHc-CCHHHHHHHHhh
Confidence 999998 999999998774
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-85 Score=818.93 Aligned_cols=560 Identities=34% Similarity=0.541 Sum_probs=489.7
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 687 LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMG 766 (1265)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 766 (1265)
++.+.+ ++ .+..+.++.++...........+...++... ........+...++++.++..++.+...+...+.+
T Consensus 7 l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (567)
T COG1132 7 LLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL----ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLG 80 (567)
T ss_pred HHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 55 5555555555554444444455555555443 11122333445555556677778888888888888
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 767 ERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVV 846 (1265)
Q Consensus 767 ~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~ 846 (1265)
.+...++|.++++++++.|++||++ +++|++++|+++|++.++..+......+...+..+++.+++++..+|.+++++
T Consensus 81 ~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 158 (567)
T COG1132 81 QKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALIL 158 (567)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999997 78999999999999999999999866666678888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000830 847 VATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIF 926 (1265)
Q Consensus 847 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1265)
+...|++.+......+..+...+..++...+..+.+.|.++|+++||+|+.++...+++.+..+...+...+.....+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (567)
T COG1132 159 LLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALL 238 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888887777766677777788888899999999999999999999999999999888888888877777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 000830 927 YGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGD 1006 (1265)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 1006 (1265)
..+..++........+++|..++..+.++.+.+...+.+......++..+......+..+..+++|++++++.+++....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 318 (567)
T COG1132 239 APLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDP 318 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 78888889999999999999999999999999888888888888889999999999999999999999999986653322
Q ss_pred CCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCC
Q 000830 1007 IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKR 1086 (1265)
Q Consensus 1007 ~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1086 (1265)
... .....|.|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|+|||+||++
T Consensus 319 ~~~-~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~ 395 (567)
T COG1132 319 PDP-LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRD 395 (567)
T ss_pred CCC-CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhh
Confidence 111 2344678999999999984 3579999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000830 1087 LNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1087 ~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrla 1166 (1265)
+++++||++|++|||||+||+|||+|||++|+++++|||+++||+.++++|||.++|+||||.|||+|.+||||||||||
T Consensus 396 i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 396 ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred cCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCC
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENED 1246 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1246 (1265)
||||++++|||||||||||+||++||+.|++++++..++||+|+||||++|+++||+|+|||+|+|+|.|+|+||++ .+
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~-~~ 554 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA-KG 554 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH-cC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999 59
Q ss_pred cHHHHHHHHhhc
Q 000830 1247 GAYFKLINLQQR 1258 (1265)
Q Consensus 1247 g~f~~l~~~~~~ 1258 (1265)
|.|++||+.|..
T Consensus 555 g~y~~l~~~~~~ 566 (567)
T COG1132 555 GLYARLYQAQGG 566 (567)
T ss_pred CHHHHHHHHhhc
Confidence 999999998753
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-86 Score=841.72 Aligned_cols=605 Identities=24% Similarity=0.316 Sum_probs=523.3
Q ss_pred CCCC--CCCCcccccCcccCCCCCCCCcchhhhhHHHhhhhhHhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 000830 1 MSTP--AVGSFPVNDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIF 78 (1265)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (1265)
+.|| +.|-..++.++....|++......+..+.++.+.+...+++++++.+++++. +...++++++..++....|++
T Consensus 100 i~dP~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~ 178 (708)
T TIGR01193 100 IADPDPTVGITKISKEDFYEEWTGIAIFISPTPEYKPIKEKENSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYY 178 (708)
T ss_pred EEcCCcccCCEEecHHHHHhhCCCEEEEEEecccccccccccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4699 8898788889999999987666665544443322335567777777665443 345555566666666777778
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccCh
Q 000830 79 FGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEAST 158 (1265)
Q Consensus 79 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~ 158 (1265)
++.++|.+.... ....+..+...++++.++..++.+++.++..+.+.++..++|.++|+|++++|+++|++ .++
T Consensus 179 ~~~iiD~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~~~ 252 (708)
T TIGR01193 179 LQKIIDTYIPHK-----MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-RRT 252 (708)
T ss_pred HHHHHHHhhccC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-Cch
Confidence 999999865321 11222333333444555667788888899999999999999999999999999999997 589
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 159 GEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYV 238 (1265)
Q Consensus 159 G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1265)
|++++|++ |++.+++++...+...+.++..+++.++++++++|.+++++++.+|+++++..++.++.++..++.++..+
T Consensus 253 G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 331 (708)
T TIGR01193 253 GEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANA 331 (708)
T ss_pred hHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 99999999988888888888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 000830 239 KAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNG 318 (1265)
Q Consensus 239 ~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 318 (1265)
+.++.+.|.++|+++||+|+.|+.+.++|++...+..+...+.....+....+..++..+..++++++|++++.+|.+|.
T Consensus 332 ~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~ 411 (708)
T TIGR01193 332 VLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTL 411 (708)
T ss_pred HHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 99999999999999999999999999999999998888888888777777666666666777888899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCc
Q 000830 319 GESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVA 398 (1265)
Q Consensus 319 g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~ 398 (1265)
|.++++..+......|+..+...+..+++++.+.+|+.++++.+++.+... .....+...+.|+|+||+|+|++ +++
T Consensus 412 G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~ 488 (708)
T TIGR01193 412 GQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK-KRTELNNLNGDIVINDVSYSYGY--GSN 488 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc-cccCCCCCCCcEEEEEEEEEcCC--CCc
Confidence 999998877777778999999999999999999999999998665432211 10112334568999999999973 346
Q ss_pred cccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHh
Q 000830 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI 478 (1265)
Q Consensus 399 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni 478 (1265)
+|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|+||++||+|||
T Consensus 489 iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi 568 (708)
T TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENL 568 (708)
T ss_pred ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHH
Q 000830 479 LYG-KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557 (1265)
Q Consensus 479 ~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~ 557 (1265)
.++ .++++++++.++|+.+++++++..+|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+
T Consensus 569 ~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~ 648 (708)
T TIGR01193 569 LLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK 648 (708)
T ss_pred hccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHH
Confidence 999 5788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHH
Q 000830 558 SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618 (1265)
Q Consensus 558 ~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 618 (1265)
.+.+.|+++ +++|+|+||||+++++.||+|++|++|++++.|+|+||+++ ++.|+++++
T Consensus 649 ~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 649 KIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLIH 707 (708)
T ss_pred HHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHhh
Confidence 999999885 68999999999999999999999999999999999999987 788988864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-85 Score=832.92 Aligned_cols=598 Identities=25% Similarity=0.284 Sum_probs=511.0
Q ss_pred CCCCCCCCc-ccccCcccCCCCCCCCcchhhhhHHHhhhhhHhHHHHHHh-hchhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 000830 1 MSTPAVGSF-PVNDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAF-ADFYDYILMSLGSIGACVHGVSVPVFFIF 78 (1265)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (1265)
+.||+.|.. ..+.++.+.. ++......+. .+ .+...+++++++ .++.+ ..+...++++++..++....|++
T Consensus 86 i~dP~~g~~~~~~~~e~~~~-~g~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~p~~ 158 (686)
T TIGR03797 86 IFDPATGTRRRVDAAMAATL-APEAYMFYRP--LP---DKALGLRDLLRFALRGAR-RDLLAILAMGLLGTLLGMLVPIA 158 (686)
T ss_pred EECCCCCCCcccCHHHHHhc-CCEEEEEecC--Cc---cccccHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999976 5666655444 3323333222 11 111335555555 33333 33445555666666666677778
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccCh
Q 000830 79 FGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEAST 158 (1265)
Q Consensus 79 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~ 158 (1265)
++.++|.+.... . ...+..+.+.++++.++..++.+++.++....+.++..++|.++|+|++++|++||++ .++
T Consensus 159 ~~~iid~v~~~~----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~~~ 232 (686)
T TIGR03797 159 TGILIGTAIPDA----D-RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ-YST 232 (686)
T ss_pred HHHHHHHhhhcC----C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CCh
Confidence 999999865321 1 1223333444455556667888888899999999999999999999999999999997 589
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 159 GEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYV 238 (1265)
Q Consensus 159 G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1265)
|++++|++ |++.+++++...+...+..+...++.++++++++|.+++++++.+|+.+++..++.+..++..++.++..+
T Consensus 233 g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (686)
T TIGR03797 233 GDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSG 311 (686)
T ss_pred hHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 89999999998888888888888888899999999999999999999888888899999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 000830 239 KAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNG 318 (1265)
Q Consensus 239 ~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 318 (1265)
+.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+....+..++..+..++++++|++++.+|.++.
T Consensus 312 ~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~lti 391 (686)
T TIGR03797 312 KISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSL 391 (686)
T ss_pred HHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 99999999999999999999999999999999999999999888888887777777777788888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCc
Q 000830 319 GESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVA 398 (1265)
Q Consensus 319 g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~ 398 (1265)
|.++++..+......|+..+...+..+++++.+.+|+.++++.+++.+. .........+.|+|+||+|+|++. +++
T Consensus 392 G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~~~~~~~~I~~~nvsf~Y~~~-~~~ 467 (686)
T TIGR03797 392 GSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTDPGKLSGAIEVDRVTFRYRPD-GPL 467 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCCCCCCCceEEEEEEEEEcCCC-Ccc
Confidence 9999888777777788999999999999999999999999976554321 111122345679999999999743 357
Q ss_pred cccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHh
Q 000830 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENI 478 (1265)
Q Consensus 399 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni 478 (1265)
+|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++++++++|++|+||||||++|++||+|||
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi 547 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENI 547 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHH
Q 000830 479 LYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558 (1265)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~ 558 (1265)
++++| .++++++++|+.+++++++..+|+|+||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.
T Consensus 548 ~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~ 626 (686)
T TIGR03797 548 AGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAI 626 (686)
T ss_pred hcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 99998 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHHH
Q 000830 559 VQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1265)
Q Consensus 559 i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1265)
+.+.|+++ ++|+|+||||+++++.||+|++|++|+|++.|+|+||+++ ++.|++++..|
T Consensus 627 i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 627 VSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred HHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhc
Confidence 99999886 6899999999999999999999999999999999999987 79999988643
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-85 Score=840.35 Aligned_cols=605 Identities=23% Similarity=0.283 Sum_probs=521.6
Q ss_pred CCCCCCCCcccccCcccCCCCCCCCcchhhhhHHHhhhhhHhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000830 1 MSTPAVGSFPVNDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFG 80 (1265)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1265)
+.||+.|-..++.++..+.|++......+..+.++.+.....+++++++.+++++. +...++++++..++....|++++
T Consensus 100 i~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~ 178 (710)
T TIGR03796 100 LNDPALGPRTVSLEEFDESFTGVVLTFEPGPEFQKGGRKPSLLRALWRRLRGSRGA-LLYLLLAGLLLVLPGLVIPAFSQ 178 (710)
T ss_pred EECCCCCCEEccHHHHHhhCCCeEEEEEECccccccCcCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999998888888888899886666655544433322224456666666655433 34445555555556666677889
Q ss_pred HHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhH
Q 000830 81 KLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 160 (1265)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~ 160 (1265)
.++|.+.... . ...+..+...++++.++..++.+++.++....+.++..++|.++|+|++++|+++|++ .++|+
T Consensus 179 ~iid~v~~~~----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-~~~g~ 252 (710)
T TIGR03796 179 IFVDEILVQG----R-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ-RHAGD 252 (710)
T ss_pred HHHHHHhhcC----C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CcccH
Confidence 9999765321 1 1122223333444455667788888999999999999999999999999999999997 58999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 161 VISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKA 240 (1265)
Q Consensus 161 l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1265)
+++|+++| +.+++++...+..++.+++.+++.++++++++|.+++++++.+|+.+++..++.++.++..++.++..++.
T Consensus 253 ~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (710)
T TIGR03796 253 IASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKL 331 (710)
T ss_pred HHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 78999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhH
Q 000830 241 GEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE 320 (1265)
Q Consensus 241 ~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~ 320 (1265)
++.+.|.++|+++||++++|+.+.++|++...+..+...+..+..+....+..++..+..++++++|++++.+|.++.|.
T Consensus 332 ~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~ 411 (710)
T TIGR03796 332 TGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGM 411 (710)
T ss_pred HHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999999999999888888888887777777777788888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccc---c-CCCC-CCCcccEEEEeEEEECCCCC
Q 000830 321 SFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSK---T-GRKL-DKLSGHIEFKDVSFCYPSRP 395 (1265)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~-~~~~-~~~~~~i~~~~v~f~y~~~~ 395 (1265)
++++..+......|+..+...+..++++..+.+|+.++++.+++.+.... . .... +...+.|+++||+|+|++.
T Consensus 412 lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~- 490 (710)
T TIGR03796 412 LVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL- 490 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-
Confidence 99888777777789999999999999999999999999987654322110 0 0111 2335689999999999853
Q ss_pred CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHH
Q 000830 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (1265)
Q Consensus 396 ~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 475 (1265)
++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~ 570 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHH
Q 000830 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555 (1265)
Q Consensus 476 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~ 555 (1265)
|||.++.|+.++++++++|+.+++++++.++|+|+||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++
T Consensus 571 eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 571 DNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHH
Q 000830 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1265)
Q Consensus 556 ~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 617 (1265)
|+.+.+.|++ .++|+|+||||+++++.||+|++|++|+|++.|+|+||+++ ++.|++++
T Consensus 651 e~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 651 EKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred HHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 9999999986 58999999999999999999999999999999999999987 78898876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-85 Score=830.99 Aligned_cols=566 Identities=34% Similarity=0.498 Sum_probs=497.7
Q ss_pred hhHhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 000830 39 RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSS 118 (1265)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1265)
....+++++++.++.+ ..+++++++.++..++....|++++.++|.+.... . ...+......++++.++..++.
T Consensus 145 ~~~~~~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~ 218 (711)
T TIGR00958 145 TADLLFRLLGLSGRDW-PWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK----G-PPALASAIFFMCLLSIASSVSA 218 (711)
T ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----C-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345778888887654 44566677777777788888889999999875321 1 1122222333444455566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 119 WIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGF 198 (1265)
Q Consensus 119 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 198 (1265)
+++.++..+.+.++..++|.++|++++++|+++|++ .++|++++|+++|++.+++.+...+..++..+..+++.+++++
T Consensus 219 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~ 297 (711)
T TIGR00958 219 GLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFML 297 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999997 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 000830 199 ARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYG 278 (1265)
Q Consensus 199 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 278 (1265)
.++|.++++.++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+..
T Consensus 298 ~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 377 (711)
T TIGR00958 298 WLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLN 377 (711)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000830 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358 (1265)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~ 358 (1265)
.+.....+....+..++..+..++++++|++++.+|.++.|.+++++.+......++..+...+..+++++.+.+|++++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~ 457 (711)
T TIGR00958 378 KRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEY 457 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666555666666677788899999999999999999988888888889999999999999999999999999
Q ss_pred hccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 000830 359 IERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438 (1265)
Q Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 438 (1265)
++.+++.+.. ....+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++
T Consensus 458 l~~~~~~~~~--~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~ 535 (711)
T TIGR00958 458 LDRKPNIPLT--GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535 (711)
T ss_pred hCCCCCCCCC--CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 9876543221 11122234567999999999986555679999999999999999999999999999999999999999
Q ss_pred ceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCC
Q 000830 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518 (1265)
Q Consensus 439 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 518 (1265)
|+|.+||+|+++++.+++|++|+||+|||++|++||+|||.+|.++.+++++.++++.+++++++.++|+|+||.+||+|
T Consensus 536 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred CEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEE
Q 000830 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVK 598 (1265)
Q Consensus 519 ~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 598 (1265)
.+|||||||||+||||++++|+|||||||||+||+++|+.+++ . ...+++|+|+||||+++++.||+|++|++|+|+|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998 3 3346899999999999999999999999999999
Q ss_pred eeCcchhccCCchHHHHH
Q 000830 599 TGSHEELISNPNSAYAAL 616 (1265)
Q Consensus 599 ~g~~~~l~~~~~~~~~~~ 616 (1265)
+|+|+||+++ ++.|+++
T Consensus 694 ~Gt~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 694 MGTHKQLMED-QGCYKHL 710 (711)
T ss_pred eeCHHHHHhC-CCchHhc
Confidence 9999999987 6788765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-85 Score=817.70 Aligned_cols=566 Identities=22% Similarity=0.289 Sum_probs=476.5
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGI 764 (1265)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 764 (1265)
.+++.+.+++++.+..++++.++..+..+..++.+...++........ ......+..+++++.++..++.+++.++...
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888777777777777777766644311111 1122233444555566677788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (1265)
Q Consensus 765 ~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~l 844 (1265)
.+.+...++|.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..++.++++++++++++|.+++
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 167 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQG--KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 889999999999999999999999999999988888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000830 845 VVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAG 924 (1265)
Q Consensus 845 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1265)
++++.+|+.++......+..+...++.++...+..+.+.|.++|+++||+|++|+++.+++.+..++..+...+..+...
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 168 ILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777777777777777778888888999999999999999999999999999999888887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 925 IFYGISQFFIFSSYGLALWYGSVLMGKELASFKSV---------MKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFE 995 (1265)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 995 (1265)
....+..++..+...+..++++..+ .+.+++|.+ +.+..+......++..+......+..+..+.+|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 248 LSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555554444444444333 255555543 111122333456777788888899999999999999
Q ss_pred HhcccccccCCCCcccC-CCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC
Q 000830 996 VLDRKTQVIGDIGEELT-NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074 (1265)
Q Consensus 996 ~~~~~~~~~~~~~~~~~-~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~ 1074 (1265)
+++.+++.........+ +..+.|+|+||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+| |++
T Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 327 FLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 99876532211111111 23457999999998863 356999999999999999999999999999999999999 999
Q ss_pred cEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCC
Q 000830 1075 GKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERG 1154 (1265)
Q Consensus 1075 G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G 1154 (1265)
|+|++||+|+++++.+++|++|+||||||+||+|||||||.+|+|+++|+|+++|++.++++++|+++|+||||.|||+|
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEE
Q 000830 1155 VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIE 1234 (1265)
Q Consensus 1155 ~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive 1234 (1265)
.+||||||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred ecChhhhhhcCCcHHHHHHHHhhc
Q 000830 1235 QGTHSSLVENEDGAYFKLINLQQR 1258 (1265)
Q Consensus 1235 ~Gt~~eLl~~~~g~f~~l~~~~~~ 1258 (1265)
.|+|+||++ .+|.|+++++.|.+
T Consensus 564 ~G~~~eL~~-~~~~y~~l~~~q~~ 586 (588)
T PRK11174 564 QGDYAELSQ-AGGLFATLLAHRQE 586 (588)
T ss_pred cCCHHHHHh-cchHHHHHHHHhhc
Confidence 999999998 68999999988754
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-84 Score=823.13 Aligned_cols=564 Identities=33% Similarity=0.515 Sum_probs=496.1
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 683 SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1265)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 762 (1265)
..++++++.+++|+++..++++.++........++...+.++....... ........++++++.++..++..++.+++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSF 225 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888777777777666666666666666665432111 11122233445555566777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1265)
Q Consensus 763 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 842 (1265)
.+.+.++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+..++..+..+++++++++.++|.+
T Consensus 226 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 226 NYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999996 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000830 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922 (1265)
Q Consensus 843 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1265)
++++++..|+.++......+..++..++.++...+.++.+.|+++|+++||+|+.|+++.++|.+..++..+...+....
T Consensus 304 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 383 (711)
T TIGR00958 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998988888777777777777788888888899999999999999999999999999999999988887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000830 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1265)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 1002 (1265)
......+..++......+.+++|.+++..+.++.+.++....+......++..+.....++..+..+.+|++++++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 463 (711)
T TIGR00958 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66666667777777778888999999999999999999888888888889999999999999999999999999987665
Q ss_pred ccCCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCc
Q 000830 1003 VIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI 1082 (1265)
Q Consensus 1003 ~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~ 1082 (1265)
........+++..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 464 ~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 543 (711)
T TIGR00958 464 IPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGV 543 (711)
T ss_pred CCCCCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 43221112223467899999999998766668999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1083 DIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1083 di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
|+++++.+++|++|+||||||++|+|||||||.+|.++.+|+++++|++.++++++++++|+||||.+||+|.+||||||
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
||||||||++++|+|||||||||+||++||+.+++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+||+
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHH
Confidence 99999999999999999999999999999999999 3345789999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHH
Q 000830 1243 ENEDGAYFKLI 1253 (1265)
Q Consensus 1243 ~~~~g~f~~l~ 1253 (1265)
+ .+|.|++|+
T Consensus 702 ~-~~~~y~~lv 711 (711)
T TIGR00958 702 E-DQGCYKHLV 711 (711)
T ss_pred h-CCCchHhcC
Confidence 8 688999874
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-84 Score=828.89 Aligned_cols=597 Identities=24% Similarity=0.307 Sum_probs=511.5
Q ss_pred CCCCCCC--CcccccCcccCCCCCCCCcchhhhhHHHhh-h--hhHhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHH
Q 000830 1 MSTPAVG--SFPVNDYNNSSNNNNNNNTEDQESSKKQQQ-K--RSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVF 75 (1265)
Q Consensus 1 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (1265)
+.||+.| -...+..+..+.|++......+....++.+ + ....+++++++.+++++ .+...++++++..++....
T Consensus 88 i~DP~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~ 166 (694)
T TIGR03375 88 VLLPETGDGEQELSLDALEALYSGYAIFVRPQFRFDARADELISPRPKHWFWSTLKESWP-LYRDVLIASLLINLLALAS 166 (694)
T ss_pred EEccCCCCCceEecHHHHHhhcCCeEEEEecccccccccccccccccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4699999 666777777777777544443332222111 1 12345666666665543 3345555666666667777
Q ss_pred HHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccc
Q 000830 76 FIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTE 155 (1265)
Q Consensus 76 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~ 155 (1265)
|++++.++|.+.... . ...+..+.+.++++.++..++.+++.++..+.+.++..++|.++|+|++++|+++ ++
T Consensus 167 p~~~~~iiD~~~~~~----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~- 239 (694)
T TIGR03375 167 PLFVMNVYDRVVPNQ----A-FETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RP- 239 (694)
T ss_pred HHHHHHHHHHhhhcC----c-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-
Confidence 778999999765321 1 1222223333444455567788889999999999999999999999999999998 55
Q ss_pred cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 156 ASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRK 235 (1265)
Q Consensus 156 ~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (1265)
.++|++++|+ +|++.+++++...+...+.++..+++.++++++++|.++++.++.+|+++++..++.++.++..++.++
T Consensus 240 ~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 318 (694)
T TIGR03375 240 ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMR 318 (694)
T ss_pred CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999 799999999998888888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000830 236 SYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHI 315 (1265)
Q Consensus 236 ~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 315 (1265)
..++..+.+.|+++|+++||+|++|+.+.++|++..++..+...+..+..+....+..++..+..++++++|++++.+|.
T Consensus 319 ~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ 398 (694)
T TIGR03375 319 ESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGE 398 (694)
T ss_pred HHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999998888888877777777888888999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCcccEEEEeEEEECCCCC
Q 000830 316 SNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRP 395 (1265)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~ 395 (1265)
++.|.+++++.+......|+..+...+..+..++.+.+|+.++++.+++.+.. ..........+.|+|+||+|+|++.
T Consensus 399 ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~-~~~~~~~~~~~~I~~~~vsf~Y~~~- 476 (694)
T TIGR03375 399 LTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG-TRFLHRPRLQGEIEFRNVSFAYPGQ- 476 (694)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCCCCccceEEEEEEEEEeCCC-
Confidence 99999999887777777899999999999999999999999999876543221 1111122345679999999999743
Q ss_pred CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHH
Q 000830 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (1265)
Q Consensus 396 ~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 475 (1265)
++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHH
Q 000830 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555 (1265)
Q Consensus 476 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~ 555 (1265)
|||.+++|++++++++++++.+++++++..+|+|+||.+||+|.+|||||||||+||||++++|+|||||||||+||+++
T Consensus 557 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 557 DNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred HHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 556 ~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|+.+++.|.++.+++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 637 e~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 637 EERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999998889999999999999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-83 Score=791.75 Aligned_cols=567 Identities=22% Similarity=0.278 Sum_probs=485.7
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1265)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1265)
+++++++.+++++ .++++++++++..++....|.+++.++|................ .....+++++++..++.++..
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (574)
T PRK11160 4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYM-LPAAGVRGAAIGRTAGRYGER 81 (574)
T ss_pred hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666544 34566667777666777777789999986532110000000111 112223344556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1265)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 202 (1265)
++.+..+.++..++|.++|+|++++|+.+|++ .++|++++|+++|++.+++++...++.++..++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (574)
T PRK11160 82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR-YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL 160 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHhhcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999997 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 000830 203 QISLVTLSIVPLIALA-GGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (1265)
Q Consensus 203 ~l~l~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 281 (1265)
.+++++++++|+++++ ..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+.
T Consensus 161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (574)
T PRK11160 161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ 240 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888876653 466778888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 000830 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVI-AGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360 (1265)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 360 (1265)
.+..+...++..++..+..++++++|++++ +|.++.|.+++++.+... ...++..+...+..++++.++++|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~ 319 (574)
T PRK11160 241 ANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE 319 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988888888777777777777888898884 788899988776554433 334666677788899999999999999998
Q ss_pred cccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcce
Q 000830 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1265)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 440 (1265)
.+++.+... . .......+.|+|+||+|+|+++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+
T Consensus 320 ~~~~~~~~~-~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 320 QKPEVTFPT-T-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred CCCCCCCCc-c-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 765432111 1 1112234679999999999753 246999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCC
Q 000830 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1265)
Q Consensus 441 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1265)
|.+||+|+++++.+++|++|+||||||++|++||+|||+++.|+.+++++.++++.+++++++.. |+||||.+||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 99999999999999999999999999999999999999999998999999999999999999999 99999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEee
Q 000830 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 521 LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 600 (1265)
|||||||||+||||++++|+|||||||||+||+++|+.+++.|.++.+++|+|+||||+++++.||+|++|++|++++.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CcchhccCCchHHHHHHH
Q 000830 601 SHEELISNPNSAYAALVQ 618 (1265)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~ 618 (1265)
+|+||+++ ++.|+++++
T Consensus 556 ~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 556 THQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CHHHHHhc-CcHHHHHHh
Confidence 99999987 899999875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=733.62 Aligned_cols=551 Identities=25% Similarity=0.337 Sum_probs=488.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 61 GSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAY 140 (1265)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~ 140 (1265)
..+++.+.++......+++..+++.+.... ....+..+...+++..++..++.|.+.......+.++..++|..+
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~-----~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~ 79 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQ-----LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLV 79 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666667777777655321 123334445555666777888899999888999999999999999
Q ss_pred HHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 141 LRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGG 220 (1265)
Q Consensus 141 ~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~ 220 (1265)
++++.++++.+-.+ .++|+..+.++..++.++.+++..+|+++...+..+..++.+++++|.-++++++.+|++.+++.
T Consensus 80 l~~l~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi 158 (559)
T COG4988 80 LDKLAKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI 158 (559)
T ss_pred HHHHHhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 221 MYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSW 300 (1265)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1265)
++++..++..+++...+.++++.+-+.++|+.|+|+|+..+...+++.+..++.++..++.-++.-+...++.++..++.
T Consensus 159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi 238 (559)
T COG4988 159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI 238 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888999999988
Q ss_pred HHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCc
Q 000830 301 SLLVWYVSVVVHK-HISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLS 379 (1265)
Q Consensus 301 ~~~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 379 (1265)
+++..+.+....+ |.++....+.+++..--++.|+..+...++.-+.+.++.+.++.+++.+.+..+............
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 8888777776666 677766555554444445679999999999999999999999999987654322111001111122
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
..++.+|++|.||+.+ ++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||++
T Consensus 319 ~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 3455669999998643 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000830 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1265)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 539 (1265)
++||+|+|+||++||||||++++++++++++.++++.+++.+|+.. |+|+||.+||+|.+|||||+||+++||||++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHH
Q 000830 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (1265)
Q Consensus 540 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 619 (1265)
+++|||||||+||.+||+.|.+.|.++.+++|+|+||||+..+++||+|+||++|++++.|+|++|.++ ++.|++|+..
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 8999999987
Q ss_pred HH
Q 000830 620 QE 621 (1265)
Q Consensus 620 ~~ 621 (1265)
|+
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 75
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-83 Score=811.68 Aligned_cols=606 Identities=24% Similarity=0.324 Sum_probs=523.1
Q ss_pred CCCCCCC-CcccccCcccCCCCCCCCcchhhhhHHHhhhhhHhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000830 1 MSTPAVG-SFPVNDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFF 79 (1265)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1265)
+.||+.| -..++.++..+.|++......+.. .++ ++....+.+++++.+++++ .+...++++++..++....|+++
T Consensus 86 i~Dp~~g~~~~i~~~e~~~~~~g~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~ 162 (694)
T TIGR01846 86 IYDPPGDAPEVLSREVLEALWSGTVILLATRS-VAG-KALKFGFSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLF 162 (694)
T ss_pred EEcCCCCCceeeCHHHHHhhCCCeEEEEecCc-ccc-ccccCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999 667888888888988666555443 221 1222346667666665433 33445555556666666677789
Q ss_pred HHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChh
Q 000830 80 GKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTG 159 (1265)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G 159 (1265)
+.++|.+.... . ...+..+.+.++++.++..++.+++.++....+.++..++|.++|+|++++|+++|++ .++|
T Consensus 163 ~~iid~v~~~~----~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-~~~g 236 (694)
T TIGR01846 163 QVVIDKVLVHR----G-LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES-RRVG 236 (694)
T ss_pred HHHHHHhhccC----C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-CCHH
Confidence 99999765321 1 1223333344445555667888999999999999999999999999999999999997 5999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 160 EVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVK 239 (1265)
Q Consensus 160 ~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1265)
++++|+ +|++.+++++...+..++..+...++.++++++++|.+++++++.+|+++++..++.++.++..++..+..++
T Consensus 237 ~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (694)
T TIGR01846 237 DTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAA 315 (694)
T ss_pred HHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 6999999999888888887777777778899999999999999999999888888888889999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q 000830 240 AGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGG 319 (1265)
Q Consensus 240 ~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g 319 (1265)
.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+....+..++..+..++++++|++++..|.++.|
T Consensus 316 ~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G 395 (694)
T TIGR01846 316 ATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPG 395 (694)
T ss_pred HHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999999888888877777777778888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCcc
Q 000830 320 ESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAI 399 (1265)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~ 399 (1265)
.++++.........|+..+...+..+++++.+.+|+.++++.+++.+.. .....+...+.|+++||+|+|++. ++++
T Consensus 396 ~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~i 472 (694)
T TIGR01846 396 QLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEV 472 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-Cccc
Confidence 9998877777777899999999999999999999999999866543211 111122345689999999999743 3469
Q ss_pred ccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhc
Q 000830 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENIL 479 (1265)
Q Consensus 400 l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~ 479 (1265)
|+|+||++++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|++|++||+|||.
T Consensus 473 l~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~ 552 (694)
T TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIA 552 (694)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH
Q 000830 480 YGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559 (1265)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i 559 (1265)
++.|+.+++++.++|+.+++++++..+|+|+||.+||+|.+||||||||++|||||+++|+|||||||||+||+++++.+
T Consensus 553 ~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i 632 (694)
T TIGR01846 553 LCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI 632 (694)
T ss_pred cCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHH
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHHH
Q 000830 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1265)
Q Consensus 560 ~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1265)
.+.|+++.+++|+|+||||+++++.||+|++|++|+|++.|+|+|++++ ++.|++++..|
T Consensus 633 ~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 633 MRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 9999998889999999999999999999999999999999999999987 79999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-82 Score=805.82 Aligned_cols=555 Identities=26% Similarity=0.357 Sum_probs=484.0
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 691 VRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLT 770 (1265)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 770 (1265)
.+++++.+...++++++..+.....++.+..+++...... .......+.+.++++.++..++.+++.++....+.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (686)
T TIGR03797 131 LRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA--DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMD 208 (686)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655555555555544444444444444444332111 11122334455555666678888899999999999999
Q ss_pred HHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 771 LRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATY 850 (1265)
Q Consensus 771 ~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~ 850 (1265)
.++|..+|+++++.|+.||++ .++|++++|++ |++.+++.+...+...+..+...++++++++.++|.+++++++.+
T Consensus 209 ~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 285 (686)
T TIGR03797 209 ASLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALA 285 (686)
T ss_pred HHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999996 88999999997 799999999888888777888888888899999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000830 851 PLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGIS 930 (1265)
Q Consensus 851 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1265)
|+.++..++..+..+...++..+...+..+.+.|+++|+++||+++.|+++.++|.+...+..+...+......+...+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (686)
T TIGR03797 286 LVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFN 365 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777777777888888889999999999999999999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcc
Q 000830 931 QFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEE 1010 (1265)
Q Consensus 931 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~ 1010 (1265)
.++..+...+.+|+|.+++..+.++.+.++++..+......++..+......++.+..+.+|+.++++.+++..... ..
T Consensus 366 ~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~~ 444 (686)
T TIGR03797 366 AVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-TD 444 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-CC
Confidence 88888888999999999999999999999998888888888899999999999999999999999998765432211 11
Q ss_pred cCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHH
Q 000830 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK 1090 (1265)
Q Consensus 1011 ~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~ 1090 (1265)
..+..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+
T Consensus 445 ~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 445 PGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQ 523 (686)
T ss_pred CCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHH
Confidence 22345789999999999743 35799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1091 SLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1091 ~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
++|++|+||||||++|+|||||||.++++ ++++++++|++.++++++++++|+||||.+||+|.+|||||||||+||||
T Consensus 524 ~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARA 602 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARA 602 (686)
T ss_pred HHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHH
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYF 1250 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~ 1250 (1265)
++++|+|||||||||+||++||+.+++.|++. ++|+|+||||+++++.||+|+||++|+|+|.|+|+||++ ++|.|+
T Consensus 603 ll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~-~~~~y~ 679 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGLFA 679 (686)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh-CCcHHH
Confidence 99999999999999999999999999999987 689999999999999999999999999999999999998 689999
Q ss_pred HHHHHh
Q 000830 1251 KLINLQ 1256 (1265)
Q Consensus 1251 ~l~~~~ 1256 (1265)
+|++.|
T Consensus 680 ~l~~~q 685 (686)
T TIGR03797 680 QLARRQ 685 (686)
T ss_pred HHHHhc
Confidence 999865
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-82 Score=727.46 Aligned_cols=550 Identities=27% Similarity=0.384 Sum_probs=489.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 701 GTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSA 780 (1265)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ 780 (1265)
..+++++.++.....+++++..+...+.... ......+.+.++++.++..++.+.+......++.++...+|+.++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL--FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666677777666654221 23344556666667777788888888899999999999999999999
Q ss_pred HHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 781 ILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISE 860 (1265)
Q Consensus 781 ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~ 860 (1265)
+.+.+..|-.. .|+|+..+.++..++.++.++...++.+....+..++.++.+++++|..+++++.+.|++.+++++.
T Consensus 83 l~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998886 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 861 KLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGL 940 (1265)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1265)
.+..+...++....+.+.++++-+.++|+.|+|.|+..+...++..+...+.++..++.-+.+.....+..++.+...++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888999999999999999999999999999999999999999999999999999888888899998888776
Q ss_pred HHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC--cccCCCccc
Q 000830 941 ALW-YGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIG--EELTNVEGT 1017 (1265)
Q Consensus 941 ~~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~--~~~~~~~g~ 1017 (1265)
... .|..++..|.+++...+.++...--...|+....+.++.-..+..+++.++.+.+.+.+...... ...+..+..
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 654 45555544788887777777777778889999999999999999999999999987765433221 112222345
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++|+||+.+ ++++|+||+++||+++||||+||||||||+++|.|+++|++|+|.+||+|.++++.+.||++++
T Consensus 321 i~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 66679999998653 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000830 1098 LVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177 (1265)
Q Consensus 1098 ~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1177 (1265)
+|||+|++|+|||||||.+++++.+|+++++|++.+++.+|++. |+|+||.+||+|.+|||||+|||++||||++++++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l 477 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL 477 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred EEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHHHhh
Q 000830 1178 LLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQ 1257 (1265)
Q Consensus 1178 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~~~~ 1257 (1265)
+|||||||+||.+||+.|++.|.++++++|||+||||++.+.+||+|+|||+||++|.|+|++|.+ ++|.|++|+++|.
T Consensus 478 ~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~-~~~~y~~l~~~q~ 556 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE-KQGLYANLLKQQE 556 (559)
T ss_pred EEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-cCcHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999998 7999999999886
Q ss_pred c
Q 000830 1258 R 1258 (1265)
Q Consensus 1258 ~ 1258 (1265)
.
T Consensus 557 ~ 557 (559)
T COG4988 557 G 557 (559)
T ss_pred c
Confidence 5
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-82 Score=806.80 Aligned_cols=562 Identities=26% Similarity=0.388 Sum_probs=489.8
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1265)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 763 (1265)
+.+++.+.+++++.+...++++++..+.....++.+..+++...... .......+.+.++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK--MMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777666665555555554455555555555443211 1112222334444555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1265)
Q Consensus 764 ~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 843 (1265)
+.+.++..++|.++|+++++.|+.||++ +++|++++|++ |.+.+.+.+.......+..+..++++++++++++|.++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 298 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF 298 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999996 89999999998 89999999888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000830 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1265)
Q Consensus 844 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1265)
+++++.+|++++..++..+..++..++..+...+..+.+.|+++|+++||++|.|+++.++|.+...+..+...+.....
T Consensus 299 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (708)
T TIGR01193 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKAD 378 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888889999999999999999999999999999999998888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000830 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1265)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1003 (1265)
.....+..++..+...+++|+|++++..+.++.|.++++..+......++..+......+..+..+.+|+.++++.+++.
T Consensus 379 ~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 458 (708)
T TIGR01193 379 QGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777788888999999999999999999999888888888899999999999999999999999999876554
Q ss_pred cCCCC-cccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCc
Q 000830 1004 IGDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI 1082 (1265)
Q Consensus 1004 ~~~~~-~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~ 1082 (1265)
..... ...++..|.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 459 ~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 459 INKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred cccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 32211 112344678999999999973 346999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhcccEEEecCCCCCcccHHHHhccC-CCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1083 DIKRLNLKSLRKHIALVQQEPALFATSIYENILYG-KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1083 di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g-~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
|+++++.+++|++|+||||||+||+|||||||.++ .++++++++++|++.+++++++.++|+||||.+||+|.+|||||
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 99999999999999999999999999999999998 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhh
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||||+||||++++|+|||||||||+||++||+.+++.|++. +++|+|+||||+++++.||+|+||++|+++|.|+|+||
T Consensus 617 rQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999985 78999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHH
Q 000830 1242 VENEDGAYFKLIN 1254 (1265)
Q Consensus 1242 l~~~~g~f~~l~~ 1254 (1265)
++ .+|.|++||+
T Consensus 696 ~~-~~~~y~~l~~ 707 (708)
T TIGR01193 696 LD-RNGFYASLIH 707 (708)
T ss_pred Hh-cCCcHHHHhh
Confidence 98 6899999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-81 Score=780.82 Aligned_cols=564 Identities=22% Similarity=0.289 Sum_probs=476.9
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDT--TQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1265)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 763 (1265)
+++++.+++++.+..+.++.++...........+...++........ ...........+.+++++..++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778877777777666665555444445555555543221110 0000111122344455667778888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1265)
Q Consensus 764 ~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 843 (1265)
..+.+...++|.++|+++++.|+.||++ .++|++++|+++|++.++.++...+..++..++.++++++++++++|.++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000830 844 LVVVATYPLIISG-HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922 (1265)
Q Consensus 844 lv~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1265)
+++++.+|++++. .++..+..+...++.++...+....+.|.++|+++||+|+.|+++.+++.+..++..+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888777765543 344455556666677778888889999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000830 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIV-TALAMGETLALVPDLLKGNQMAASVFEVLDRKT 1001 (1265)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~ 1001 (1265)
.+....+..++..+..++.+++|.+++ .+..+.+.+++.+.+... ...++..+......+..+..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888888888888888888889998884 677888887766554433 334556666777888889999999999998766
Q ss_pred cccCCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECC
Q 000830 1002 QVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081 (1265)
Q Consensus 1002 ~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1081 (1265)
+..........+..+.|+|+||+|+|+++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 323 ~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g 401 (574)
T PRK11160 323 EVTFPTTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNG 401 (574)
T ss_pred CCCCCcccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 53221111112345789999999999753 24689999999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1082 IDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1082 ~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
+|+++++.+++|++|+||||||++|+|||+|||.++.++.+|+++++|++.+++++++++ |+||||.+||+|.+|||||
T Consensus 402 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGq 480 (574)
T PRK11160 402 QPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGE 480 (574)
T ss_pred EEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHH
Confidence 999999999999999999999999999999999999989999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhh
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
|||||||||++++|+|||||||||+||++||+.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||
T Consensus 481 rqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l 560 (574)
T PRK11160 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQEL 560 (574)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHH
Q 000830 1242 VENEDGAYFKLINL 1255 (1265)
Q Consensus 1242 l~~~~g~f~~l~~~ 1255 (1265)
++ .+|.|++||+.
T Consensus 561 ~~-~~g~y~~l~~~ 573 (574)
T PRK11160 561 LA-QQGRYYQLKQR 573 (574)
T ss_pred Hh-cCcHHHHHHhh
Confidence 98 69999999863
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-84 Score=714.54 Aligned_cols=554 Identities=28% Similarity=0.368 Sum_probs=451.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 000830 59 SLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSV------AILFSSWIEVSCWMYTGERQ 132 (1265)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 132 (1265)
+...++.++.-++....|.+.+.++|.+.. +..... .....++.+.+ +..+++-++.++|..+.+-.
T Consensus 218 ~~cl~ll~i~rli~~~~pi~~k~iv~~lta----p~~~~~---~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyt 290 (790)
T KOG0056|consen 218 VFCLFLLIIGRLINVSLPILSKWIVDELTA----PDTFQY---SLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYT 290 (790)
T ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHhhcC----cchhhH---HHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhH
Confidence 334444445555566667788889887652 111111 11112222222 23456677788888888888
Q ss_pred HHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000830 133 AAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFII-GFARVWQISLVTLSI 211 (1265)
Q Consensus 133 ~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~l~~l~~ 211 (1265)
.+++-..+|+|+..+++.|+-+ +.+|+++..++...+.+. ++...+.++.-.+.-+.++++. ....+|+.+|+++++
T Consensus 291 tR~ie~~lfrHlh~LSlrwHL~-rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~ 368 (790)
T KOG0056|consen 291 TREIETELFRHLHNLSLRWHLN-RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLM 368 (790)
T ss_pred HHHHHHHHHHHHHhhceeeeec-ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHH
Confidence 8999999999999999999976 589999988877766665 3333333333333333333333 334688899998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 212 VPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGS 291 (1265)
Q Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1265)
+.+...+...+.....+..+++..+..+......+++-+.+|||-|++|+++.++|.+...++.+...|...-..+.+..
T Consensus 369 m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~ 448 (790)
T KOG0056|consen 369 MLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIV 448 (790)
T ss_pred HHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655444444455555665555566667789999999999999999999999999999888877765544443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 000830 292 MHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKT 371 (1265)
Q Consensus 292 ~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 371 (1265)
-+.+..++.+..-.+..|.+..+.++.|+.+.+..+++.+.+|+..+...+..++...+-+++++++++++++..+.+ .
T Consensus 449 Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~ 527 (790)
T KOG0056|consen 449 QNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-G 527 (790)
T ss_pred hhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-C
Confidence 333333333333344456677888999998888888889999999999999999999999999999999888765533 2
Q ss_pred CCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCC
Q 000830 372 GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL 451 (1265)
Q Consensus 372 ~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~ 451 (1265)
..+....+|.|+|+||+|.|+ +++++|+||||+++||+++|+|||||+||||++++|.|||+.++|.|+|||+||++.
T Consensus 528 a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 528 APPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV 605 (790)
T ss_pred CCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHH
Confidence 234445678999999999996 457899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
...++|++||+||||..|||+||..||.|++|.+++||+.+|++.|++||.|..+|+||+|.|||+|-.||||||||+||
T Consensus 606 t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 606 TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAI 685 (790)
T ss_pred HHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCch
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1265)
||+++++|.|++|||+|||||..||+.||.+|.++..+||.|+|+||+|++-+||.|+|+++|+|+|.|+|+||+.+++|
T Consensus 686 ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG 765 (790)
T KOG0056|consen 686 ARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGG 765 (790)
T ss_pred HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHhh
Q 000830 612 AYAALVQLQEAAS 624 (1265)
Q Consensus 612 ~~~~~~~~~~~~~ 624 (1265)
.|++||+.|+...
T Consensus 766 ~Ya~MWq~qqa~g 778 (790)
T KOG0056|consen 766 AYADMWQAQQAMG 778 (790)
T ss_pred cHHHHHHHHHhcC
Confidence 9999998876543
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-81 Score=783.04 Aligned_cols=566 Identities=30% Similarity=0.464 Sum_probs=491.2
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1265)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1265)
+++++++.+++++. +++.+++.++..++....+.+++.++|.+.... . ...+....+.+++++++..++.++..
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (582)
T PRK11176 13 FRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKA----D-RSVLKWMPLVVIGLMILRGITSFISS 86 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555443 344445555555555666667888888654311 0 11111222223344556667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1265)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 202 (1265)
++..+.+.++..++|..+|+++++.|+.+|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 87 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (582)
T PRK11176 87 YCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999987 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000830 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1265)
Q Consensus 203 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1265)
.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 166 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T PRK11176 166 QLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMV 245 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Q 000830 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1265)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 362 (1265)
+..+....+..++..+..++++++|++.+..|.++.|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~ 325 (582)
T PRK11176 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLE 325 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88887777777777777778888999999999999999887776666677789999999999999999999999999765
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEE
Q 000830 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1265)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 442 (1265)
++.+. .....++..+.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 326 ~~~~~---~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 326 QEKDE---GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred CcCCC---CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 43221 111122334579999999999753 35799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCC-CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCC
Q 000830 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1265)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1265)
+||+|+++++.+++|++|+||||||++|++||+|||++|+++ .++++++++++.+++++++.++|+|+||.+||+|.+|
T Consensus 402 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred ECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 999999999999999999999999999999999999999765 6899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeC
Q 000830 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 522 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 601 (1265)
||||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+|+|.|+
T Consensus 482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999878999999999999999999999999999999999
Q ss_pred cchhccCCchHHHHHHHHH
Q 000830 602 HEELISNPNSAYAALVQLQ 620 (1265)
Q Consensus 602 ~~~l~~~~~~~~~~~~~~~ 620 (1265)
|++++++ ++.|++++..|
T Consensus 562 ~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 562 HAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred HHHHHhC-CChHHHHHHHH
Confidence 9999987 78999998765
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-81 Score=802.78 Aligned_cols=561 Identities=23% Similarity=0.325 Sum_probs=485.2
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1265)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 763 (1265)
++.++...+++++.+...++++++..+.....++.....++...... .......+.+.++++.++..++..++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG--RQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666665555544444444333333444444444332111 1111222344455555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1265)
Q Consensus 764 ~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 843 (1265)
..+.++..+++.++|+++++.|++||++ .++|++++|++.| +.+++++...+...+..+..+++.+++++.++|.++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 296 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLT 296 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 8999999999988 679999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000830 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1265)
Q Consensus 844 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1265)
++.++.+|+.++..++..+..+....+..+...+..+.+.|+++|+++||++++|+.+.++|.+...+..+...+.....
T Consensus 297 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (710)
T TIGR03796 297 LIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLT 376 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887777777777777777778888899999999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000830 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1265)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1003 (1265)
.+...+..++..+...+++|+|++++..+.++.+.+++...+......++..+...+..+.....+.+|+.++++.+++.
T Consensus 377 ~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 456 (710)
T TIGR03796 377 QILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDP 456 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999998888888888899999999999999999999999999876554
Q ss_pred cCCC------Cccc-CCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcE
Q 000830 1004 IGDI------GEEL-TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076 (1265)
Q Consensus 1004 ~~~~------~~~~-~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1076 (1265)
.... .... ++..|.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 457 LLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred ccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3211 0111 2345789999999999853 356999999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCC
Q 000830 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQ 1156 (1265)
Q Consensus 1077 I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~ 1156 (1265)
|++||+|+++++.+++|++|+||||||++|+|||||||.++.++++++++++|++.+++++++.++|+||||.+||+|.+
T Consensus 536 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~ 615 (710)
T TIGR03796 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN 615 (710)
T ss_pred EEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEec
Q 000830 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1157 LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~G 1236 (1265)
||||||||||||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++..||||+||++|+|+|.|
T Consensus 616 LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999999987 589999999999999999999999999999999
Q ss_pred ChhhhhhcCCcHHHHHH
Q 000830 1237 THSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1237 t~~eLl~~~~g~f~~l~ 1253 (1265)
+|+||++ .+|.|++|+
T Consensus 694 ~~~~Ll~-~~~~y~~l~ 709 (710)
T TIGR03796 694 THEELWA-VGGAYARLI 709 (710)
T ss_pred CHHHHHH-cCCcHHHHh
Confidence 9999998 689999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-80 Score=775.71 Aligned_cols=566 Identities=26% Similarity=0.353 Sum_probs=477.1
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1265)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1265)
+++++.+.+++++. +++.+++.++..++.+..|.+++.++|.+.... .. . ......+.+.++++.++..++.++..
T Consensus 11 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (592)
T PRK10790 11 LKRLLAYGSPWRKP-LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKG-NL-P-LGLVAGLAAAYVGLQLLAAGLHYAQS 86 (592)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc-c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666555443 455666667777777778888999999764321 10 0 01111122223334445566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1265)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 202 (1265)
++....+.++..++|.++|+++++.|+++|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 87 LLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999997 58999999999999999999999999999999888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000830 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1265)
Q Consensus 203 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1265)
.++++.++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777888888888888888999999999999999999999999999999998888877777666
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Q 000830 283 LAKGLG-LGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1265)
Q Consensus 283 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 361 (1265)
+..+.. ..+..++..+...+++++++. +..|.++.|.+++++.+......|+..+...+..+.++..+.+|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 655543 223333333322223333333 568899999988887777777789999999999999999999999999976
Q ss_pred ccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceE
Q 000830 362 DTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1265)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 441 (1265)
+++... . .......+.|+|+||+|+|++ +.++|+|+||++++||++||||+||||||||+++|+|+|+|++|+|
T Consensus 325 ~~~~~~--~--~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I 398 (592)
T PRK10790 325 PRQQYG--N--DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398 (592)
T ss_pred CCccCC--C--CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 543211 1 111223467999999999974 3469999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCC
Q 000830 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1265)
Q Consensus 442 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1265)
.+||+|+++++++++|++|+||||+|++|++||+|||++++ +.++++++++|+.+++++++..+|+|+||.+||+|.+|
T Consensus 399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999998 57899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeC
Q 000830 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 522 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 601 (1265)
||||||||+|||||+++|+|||||||||+||+++++.|.+.|+++.+++|+|+||||++.++.||+|++|++|++++.|+
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGT 557 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred cchhccCCchHHHHHHHHHHH
Q 000830 602 HEELISNPNSAYAALVQLQEA 622 (1265)
Q Consensus 602 ~~~l~~~~~~~~~~~~~~~~~ 622 (1265)
|+||+++ ++.|+++++.|..
T Consensus 558 ~~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 558 HQQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred HHHHHhC-CCHHHHHHHHHhh
Confidence 9999987 7999999987643
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-80 Score=776.55 Aligned_cols=567 Identities=28% Similarity=0.459 Sum_probs=484.3
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGI 764 (1265)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 764 (1265)
+.++.+.+++++.+....++.++.........+.+...++..+.. ..........+.+++++++..++.+++.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (582)
T PRK11176 14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGK--ADRSVLKWMPLVVIGLMILRGITSFISSYCISW 91 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666555444444433333233333333333322211 001111122233344556677778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (1265)
Q Consensus 765 ~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~l 844 (1265)
.+.+...++|..+++++++.|..+|++ ..+|++++|+++|++.++..+...+..++..++.++++++++++++|.+++
T Consensus 92 ~~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 169 (582)
T PRK11176 92 VSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000830 845 VVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAG 924 (1265)
Q Consensus 845 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1265)
++++.+|+.++..+...+..+....+.++...+....+.|.++|+++||+++.++.+.++|.+..+...+...+..+...
T Consensus 170 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T PRK11176 170 ILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877777777777777777777788888999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000830 925 IFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI 1004 (1265)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 1004 (1265)
+...+..++..+...+.+++|.+.+..+.++++.++..+.+......++..+...+..+.....+.+|+.++++.+++..
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 329 (582)
T PRK11176 250 ISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 88888888888888888999999999999999999888888777888899999999999999999999999987654422
Q ss_pred CCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCccc
Q 000830 1005 GDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI 1084 (1265)
Q Consensus 1005 ~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1084 (1265)
.. ....++..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 330 ~~-~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 407 (582)
T PRK11176 330 EG-KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407 (582)
T ss_pred CC-CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh
Confidence 11 11122345679999999999754 35799999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCC-CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1085 KRLNLKSLRKHIALVQQEPALFATSIYENILYGKDG-ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1085 ~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~-~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
++++.+++|++|+||||||++|+|||||||.+++++ .+|++++++++.++++++++++|+||||.+||+|.+|||||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred hhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 999999999999999999999999999999998754 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
||+|||||+++|+|||||||||+||++||+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|++|++
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cCCcHHHHHHHHhhc
Q 000830 1244 NEDGAYFKLINLQQR 1258 (1265)
Q Consensus 1244 ~~~g~f~~l~~~~~~ 1258 (1265)
.++.|++|++.|.+
T Consensus 568 -~~~~y~~l~~~~~~ 581 (582)
T PRK11176 568 -QNGVYAQLHKMQFG 581 (582)
T ss_pred -CCChHHHHHHHHhc
Confidence 68999999987643
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-80 Score=775.95 Aligned_cols=565 Identities=25% Similarity=0.355 Sum_probs=470.7
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1265)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 765 (1265)
+++.+.+++++.+....++.++.....+..++.+...++...............+.++++++.++..++.+++.+.....
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (592)
T PRK10790 13 RLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRA 92 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666665555555555666665544321111111111122334444455667788888888999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1265)
Q Consensus 766 ~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv 845 (1265)
+.+...++|.++|+++++.|.+||+. .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++++
T Consensus 93 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li 170 (592)
T PRK10790 93 AVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALV 170 (592)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999996 7899999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000830 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1265)
Q Consensus 846 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1265)
+++.+|+.++.........+...++..+...+...++.|.++|+++||+|+.++++.+++.+..++..+...+..+..++
T Consensus 171 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (592)
T PRK10790 171 AIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGF 250 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887776666666666666666777778889999999999999999999999999998888777766665555444
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000830 926 F-YGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI 1004 (1265)
Q Consensus 926 ~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 1004 (1265)
. ..+..++..+...+.++++.. +..+.++.+.+++...+......++..+......+.....+.+|+.++++.+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 329 (592)
T PRK10790 251 LLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQY 329 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 3 233333333332222223333 46788999999888888888888999999999999999999999999987654321
Q ss_pred CCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCccc
Q 000830 1005 GDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI 1084 (1265)
Q Consensus 1005 ~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1084 (1265)
.. ...+...+.|+|+||+|+|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 330 ~~--~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i 405 (592)
T PRK10790 330 GN--DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL 405 (592)
T ss_pred CC--CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh
Confidence 11 112233578999999999974 34699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1085 KRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1085 ~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
++++.+++|++|+||||||.+|+|||||||.+++ +++|+++++|++.++++++++++|+||||.+||+|.+||||||||
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQR 484 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQL 484 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999987 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhc
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
|||||||+++|+|||||||||+||++||+.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+||++
T Consensus 485 ialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~- 563 (592)
T PRK10790 485 LALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA- 563 (592)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHh-
Confidence 9999999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CCcHHHHHHHHhhcc
Q 000830 1245 EDGAYFKLINLQQRQ 1259 (1265)
Q Consensus 1245 ~~g~f~~l~~~~~~~ 1259 (1265)
.++.|+++++.|..+
T Consensus 564 ~~~~y~~l~~~~~~~ 578 (592)
T PRK10790 564 AQGRYWQMYQLQLAG 578 (592)
T ss_pred CCCHHHHHHHHHhhh
Confidence 589999999987644
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-80 Score=788.40 Aligned_cols=553 Identities=24% Similarity=0.392 Sum_probs=480.6
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 685 IKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGI 764 (1265)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 764 (1265)
.+++.+.+++++.+...++++++..++....++.+...++...... .......+.+.++++.++..++.+++.++..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ--AFETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667766655555555554444444444444444332111 11112223334444555667888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (1265)
Q Consensus 765 ~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~l 844 (1265)
.+.++..++|..+|+++++.|+.| +. +++|++++|+ +|++.+++.+...+...+..+..+++.++++++++|.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~--~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 289 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RP--ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CC--CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999998 43 7899999999 7999999999888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000830 845 VVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAG 924 (1265)
Q Consensus 845 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1265)
+.++.+|+.++..+...+..++..++..+...+..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+......
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888887877778888888889999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000830 925 IFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVI 1004 (1265)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 1004 (1265)
....+..++..+...+.+|+|++++..+.++.+.++++..+......++..+...+.++.....+.+|+.++++.+++..
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888889999999999999999999998888888889999999999999999999999999998766533
Q ss_pred CCCC-cccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcc
Q 000830 1005 GDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID 1083 (1265)
Q Consensus 1005 ~~~~-~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d 1083 (1265)
.... ...++..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|
T Consensus 450 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 450 EGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 2111 1122345789999999999753 3569999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1084 IKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1084 i~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
+++++++++|++|+||||||++|+|||||||.+++++++++++++|++.++++++++++|+||||.+||+|.+|||||||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+++|.|+|+||++
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred c
Q 000830 1244 N 1244 (1265)
Q Consensus 1244 ~ 1244 (1265)
+
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 4
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-83 Score=704.91 Aligned_cols=503 Identities=30% Similarity=0.432 Sum_probs=431.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 751 TVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTA 830 (1265)
Q Consensus 751 ~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~ 830 (1265)
+.++..++.+++..+.+...+++...+|+|+....+.|+-. ..+|+.+.-+.+..+.+. ++......+...+.-+.+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 35667778888888888899999999999999999999985 779999988888877776 555554444444444444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHH
Q 000830 831 SFVI-AFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSREL 909 (1265)
Q Consensus 831 ~~~~-~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~ 909 (1265)
+++. ....+|+.+++++....+.............++.+++.....+......+++-|.+|+|-|++|++..++|++.+
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 4443 336788888888777665554443333333444445555555666777899999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 910 VEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQM 989 (1265)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 989 (1265)
.++.+..|+......+.......+..+.......+..+++..+..++|+++....+++..-+++.....+...+++...-
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 99999988877666665555555555555555555566666778899999888888888888988888889999999999
Q ss_pred HHHHHHHhcccccccCCC-CcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 000830 990 AASVFEVLDRKTQVIGDI-GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 990 ~~ri~~~~~~~~~~~~~~-~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1068 (1265)
.++++++++++++..+.. ..+....+|.|+|+||+|.|+ |++|+|+||||+++||+.+|+|||||+||||++++|+|
T Consensus 509 mEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred HHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 999999999888765432 223334679999999999997 56789999999999999999999999999999999999
Q ss_pred cCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccc
Q 000830 1069 FYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYST 1148 (1265)
Q Consensus 1069 l~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt 1148 (1265)
|||.++|+|.|||+||+++..++||++||+||||.+||+.||..||.|++|.+++||+.+|++.|++||-|.++|+||+|
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEe
Q 000830 1149 KVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIE 1228 (1265)
Q Consensus 1149 ~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~ 1228 (1265)
.|||+|-.||||||||+||||++|++|.|++|||||||||..||+.||.++.+..++||.|+|||||+|+.+||.|+|++
T Consensus 667 ~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVIS 746 (790)
T ss_pred hhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecChhhhhhcCCcHHHHHHHHhhc
Q 000830 1229 SGKIIEQGTHSSLVENEDGAYFKLINLQQR 1258 (1265)
Q Consensus 1229 ~G~Ive~Gt~~eLl~~~~g~f~~l~~~~~~ 1258 (1265)
+|+|+|.|+|+||+.+.+|.|++||+.|+.
T Consensus 747 ~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 747 NGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred CCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 999999999999999779999999986653
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-81 Score=703.81 Aligned_cols=554 Identities=26% Similarity=0.336 Sum_probs=456.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 59 SLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRM 138 (1265)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 138 (1265)
+.++++.+.+..+....|.+++.++|.+......+ ............+.+..+...++..++...+.++.+++..+.-.
T Consensus 33 ~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~ 111 (591)
T KOG0057|consen 33 FPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSS 111 (591)
T ss_pred HHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444446677777778899998764211111 11122223344455556677788899999999999999999999
Q ss_pred HHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000830 139 AYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFI-IGFARVWQISLVTLSIVPLIAL 217 (1265)
Q Consensus 139 ~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~l~l~~l~~~p~~~~ 217 (1265)
++|.|++.+++++|.+ ..+|++.+.+..-...|..++...+..++..++-+..... +..-..+..+++.+..+..+..
T Consensus 112 ~vf~~~~~ld~~~~~~-~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a 190 (591)
T KOG0057|consen 112 DVFRHLMSLDLSFFLS-RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAA 190 (591)
T ss_pred HHHHHHHhhhHHhhcC-CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhe
Confidence 9999999999999987 5899999999999999999988777777666655444332 2233455566666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 218 AGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLF 297 (1265)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1265)
+.........+..++..++..+.++.+-|++.|..+||+||.|+++.++|.....++.+...+.....++....-..+..
T Consensus 191 ~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs 270 (591)
T KOG0057|consen 191 FTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS 270 (591)
T ss_pred eEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH
Confidence 55556666667777888888899999999999999999999999999999999999999888877776666555445555
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCC
Q 000830 298 LSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDK 377 (1265)
Q Consensus 298 ~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 377 (1265)
...+.+++.|..-+.++.++.|.++.......++..|+..+...+..+.++..-+...+...+....+.. ...+...
T Consensus 271 v~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~ 347 (591)
T KOG0057|consen 271 VALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIEL 347 (591)
T ss_pred HHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCccc
Confidence 5555666667766788899999877665555566678877887888888777777666655433222111 1123344
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHh
Q 000830 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1265)
Q Consensus 378 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1265)
.++.|+|+||+|+|++ ++++|+++||+|++||++||||+|||||||++++|.||++ ++|+|+|||+|+++++++++|
T Consensus 348 ~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred CCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhh
Confidence 5678999999999973 4569999999999999999999999999999999999999 999999999999999999999
Q ss_pred hheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
+.|||||||..||++||.+||.||+|.++++++.++||.++.||-+.++|+||+|.+||+|..||||||||||||||+++
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHH
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 617 (1265)
||||++||||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|+++++|++.|.|+|+||++ +.+.|+.+|
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w 583 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLW 583 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHh
Confidence 9999999999999999999999999999888999999999999999999999999999999999999999 589999999
Q ss_pred HHHH
Q 000830 618 QLQE 621 (1265)
Q Consensus 618 ~~~~ 621 (1265)
..|.
T Consensus 584 ~~~~ 587 (591)
T KOG0057|consen 584 TTQT 587 (591)
T ss_pred cccc
Confidence 7653
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-79 Score=769.08 Aligned_cols=564 Identities=31% Similarity=0.468 Sum_probs=502.3
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 45 KLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSC 124 (1265)
Q Consensus 45 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1265)
+++++.++++ ..++++++++++.+++.+..+.+++.++|...... ....+......++++.++..++.++..++
T Consensus 4 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (571)
T TIGR02203 4 RLWSYVRPYK-AGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-----DRSVLWWVPLVVIGLAVLRGICSFVSTYL 77 (571)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555443 34567777788888888888888888888654311 11222223334555566677888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 125 WMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQI 204 (1265)
Q Consensus 125 ~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 204 (1265)
....+.++..++|..+++++++.|.++|++ .++|++++|+++|++.+++++...+..++.+++.+++.++++++++|.+
T Consensus 78 ~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l 156 (571)
T TIGR02203 78 LSWVSNKVVRDIRVRMFEKLLGLPVSFFDR-QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQL 156 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999987 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 205 SLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLA 284 (1265)
Q Consensus 205 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 284 (1265)
++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.++|++..++..+...+..+.
T Consensus 157 ~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (571)
T TIGR02203 157 TLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSA 236 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccc
Q 000830 285 KGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTM 364 (1265)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 364 (1265)
.+....+..++..+..++++++|++++..|.++.|.++++..++.....|+..+...+..+.+++.+.+|+.++++.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 316 (571)
T TIGR02203 237 GSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPE 316 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888777777777888888999999999999999999988888888889999999999999999999999999976544
Q ss_pred cccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEEC
Q 000830 365 SKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444 (1265)
Q Consensus 365 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 444 (1265)
.+.. .....+..+.|+++||+|+|+++ +.++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|.+|
T Consensus 317 ~~~~---~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~ 392 (571)
T TIGR02203 317 KDTG---TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392 (571)
T ss_pred CCCC---CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 3211 11112234679999999999754 3579999999999999999999999999999999999999999999999
Q ss_pred CeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCC-CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCCh
Q 000830 445 GNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1265)
Q Consensus 445 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1265)
|+++++++.+++|++|+||||+|++|++||+|||.++.+ +.++++++++++.+++++++.++|+|+||.+||+|.+|||
T Consensus 393 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSg 472 (571)
T TIGR02203 393 GHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472 (571)
T ss_pred CEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCH
Confidence 999999999999999999999999999999999999986 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcc
Q 000830 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 524 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 603 (1265)
||||||+||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 473 GqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hhccCCchHHHHHHHHH
Q 000830 604 ELISNPNSAYAALVQLQ 620 (1265)
Q Consensus 604 ~l~~~~~~~~~~~~~~~ 620 (1265)
+++++ ++.|++++..+
T Consensus 553 ~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 553 ELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred HHHHc-CCHHHHHHHHh
Confidence 99987 78898887654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=780.62 Aligned_cols=566 Identities=26% Similarity=0.391 Sum_probs=490.1
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1265)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 763 (1265)
+.+++...+++++.+...++++++..++....++.+...++...... .......+.+.++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~--~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR--GLSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566655555555554444444444444444444332111 1112233344555556667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1265)
Q Consensus 764 ~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 843 (1265)
..+.++..++|.++|+++++.|+.||++ .++|++++|+ +|++.+++++...+..++..+..+++.++++++++|.++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 8999999999 699999999988887777777777777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000830 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1265)
Q Consensus 844 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1265)
+++++.+|+.++..+...+..++...+..+...+..+.+.|+++|+++||++|.|+.+.++|.+..++..+...+..+..
T Consensus 282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR01846 282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877777777777667777778888899999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000830 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1265)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1003 (1265)
.....+..++..+..++.+|+|.+++..+.++.|.++++..+......++..+......+..+..+.+|+.++++.+++.
T Consensus 362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 88888888888888899999999999999999999998888888888899999999999999999999999999876553
Q ss_pred cCCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcc
Q 000830 1004 IGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID 1083 (1265)
Q Consensus 1004 ~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d 1083 (1265)
........+...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 442 ~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~ 520 (694)
T TIGR01846 442 RSAGLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD 520 (694)
T ss_pred cCCCCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 321111123345789999999999743 3468999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1084 IKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1084 i~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
+++++.+++|++++||||||.+|+|||||||.++.++.+++++++|++.+++++++.++|+||||.+||+|.+|||||||
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|++||||++++|+|||||||||+||++||+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||++
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cCCcHHHHHHHHh
Q 000830 1244 NEDGAYFKLINLQ 1256 (1265)
Q Consensus 1244 ~~~g~f~~l~~~~ 1256 (1265)
.+|.|++|++.|
T Consensus 681 -~~~~y~~l~~~~ 692 (694)
T TIGR01846 681 -LQGLYARLWQQQ 692 (694)
T ss_pred -cCChHHHHHHhh
Confidence 689999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-79 Score=760.23 Aligned_cols=565 Identities=26% Similarity=0.335 Sum_probs=484.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1265)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1265)
+++++++.+++++ .++++++++++..++.+..|++++.++|.+.... . .. ...+.++++.++.++..++..
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~----~---~~-~~~~~~~~~~~~~~~~~~~~~ 77 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKS----D---VL-PTLALWAGFGVFNTIAYVLVA 77 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----c---HH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776644 4456677777778888888889999999764311 1 11 111112222233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1265)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 202 (1265)
++......++..++|.++|+|++++|++||++ .++|++++|+++|++.+++++...+..++..++.+++.+++++.++|
T Consensus 78 ~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (585)
T TIGR01192 78 READRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDW 156 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666677789999999999999997 58999999999999999999998888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000830 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1265)
Q Consensus 203 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1265)
.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (585)
T TIGR01192 157 RLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVL 236 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888889999988888889999999999999999999999999999999999999988888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Q 000830 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1265)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 362 (1265)
+..++...+..++..+..++++++|++++.+|.++.|.+++++.+......|+..+...+..+..++.+.+|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~ 316 (585)
T TIGR01192 237 DWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSV 316 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777767666677777778889999999999999999988877777777788888889999999999999999999765
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEE
Q 000830 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1265)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 442 (1265)
++.+.. ......+...+.|+++||+|+|+++ .++|+|+||++++||++||+||||||||||+++|+|+|+|++|+|.
T Consensus 317 ~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 317 FQREEP-ADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred ccccCC-ccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 432211 1111112234579999999999742 3589999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCC
Q 000830 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1265)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1265)
+||+++++++.+++|++++||+|+|++|++|++|||.++.++.+++++.++++.+++++++.++|+|++|.+|++|.+||
T Consensus 394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LS 473 (585)
T TIGR01192 394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLS 473 (585)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCc
Q 000830 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1265)
Q Consensus 523 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 602 (1265)
|||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred chhccCCchHHHHHHHHHH
Q 000830 603 EELISNPNSAYAALVQLQE 621 (1265)
Q Consensus 603 ~~l~~~~~~~~~~~~~~~~ 621 (1265)
++++++ ++.|++++..+.
T Consensus 554 ~~l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 554 QELIQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHHHHC-CChHHHHHHhCc
Confidence 999987 789999987653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-80 Score=762.71 Aligned_cols=525 Identities=22% Similarity=0.277 Sum_probs=447.7
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 45 KLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSC 124 (1265)
Q Consensus 45 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1265)
+++++.+++++. ++++++++++..++....|++++.++|...... . ..........++++.++..++.++..++
T Consensus 3 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (529)
T TIGR02868 3 RILPLLQPRTRR-LVVAILLGALALGSAVALLGVSAWLISRAAEMP----P-VLYLSVAAVAVRAFGIGRAVFRYLERLV 76 (529)
T ss_pred hHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----h-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655443 445566666666667777778999998754211 1 0001111111223344566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 125 WMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQI 204 (1265)
Q Consensus 125 ~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 204 (1265)
....+.++..++|.++|+|++++|+++|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+
T Consensus 77 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 155 (529)
T TIGR02868 77 GHDAALRSLGRLRVRVYDRLARLALAGRRR-FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPA 155 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccccc-CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 888999999999999999999999999987 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 205 SLVTLSIVPLIALAGGMYAYV-TIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGL 283 (1265)
Q Consensus 205 ~l~~l~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 283 (1265)
++++++.+|++.++...+.++ .++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+
T Consensus 156 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02868 156 ALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAAR 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888876665444444 4556677788889999999999999999999999999999999999999999899888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 000830 284 AKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDT 363 (1265)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 363 (1265)
..+...++..++..+..++++++|++++.+|.++.|.+++++.+......++..+...+..+.++.++.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (529)
T TIGR02868 236 ATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKG 315 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888777777777777888899999999999999998888777777777888888889999999999999999998665
Q ss_pred cccccccc-CCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEE
Q 000830 364 MSKASSKT-GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1265)
Q Consensus 364 ~~~~~~~~-~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 442 (1265)
+.+..... .....+..+.|+|+||+|+|+++ +++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 316 PRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 42211110 01112234579999999999753 3599999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCC
Q 000830 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1265)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1265)
+||+|++++ .+++|++|+||||+|+||++||+|||++|.|+++++++++|++.+++++++.+||+||||.+||+|.+||
T Consensus 394 i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 394 LDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred ECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 000830 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579 (1265)
Q Consensus 523 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l 579 (1265)
||||||||||||++++|+|||||||||+||+++|+.|++.+.++.+++|+|+||||+
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999988899999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-79 Score=762.27 Aligned_cols=567 Identities=27% Similarity=0.373 Sum_probs=481.6
Q ss_pred HhHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000830 41 VSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (1265)
Q Consensus 41 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1265)
..+++++++.++++ ..+.+.++++++..++.+..|++++.++|.+... . ......+.+++++++..+..++
T Consensus 5 ~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~ 75 (588)
T PRK13657 5 RLYARVLQYLGAEK-RLGILLAVANVLLAAATFAEPILFGRIIDAISGK----G----DIFPLLAAWAGFGLFNIIAGVL 75 (588)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----c----cHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777665543 3345556666666677777777889999976431 1 1111112222222333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1265)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 200 (1265)
..++..+...++..++|.++|+|++++|+.+|++ .++|++++|+++|++.+.+.+...+..++..++.+++.+++++++
T Consensus 76 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (588)
T PRK13657 76 VARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFM 154 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666667779999999999999987 589999999999999999988888888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 000830 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280 (1265)
Q Consensus 201 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 280 (1265)
+|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||.|+.++.+.++|.+..++..+...+
T Consensus 155 ~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
T PRK13657 155 NWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMP 234 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998899888888888888888899999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 000830 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360 (1265)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 360 (1265)
.....+....+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+..+..+.+|+.++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~ 314 (588)
T PRK13657 235 VLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVED 314 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 87777777766667777777788899999999999999999888777777777888888889999999999999999987
Q ss_pred cccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcce
Q 000830 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1265)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 440 (1265)
.+++.+.. ..........+.|+++||+|+|+++ .++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+
T Consensus 315 ~~~~~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~ 391 (588)
T PRK13657 315 AVPDVRDP-PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391 (588)
T ss_pred CCcccCCC-CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 65432211 1111112234579999999999742 45999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCC
Q 000830 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1265)
Q Consensus 441 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1265)
|.+||+++++++.+++|++|+||||+|++|++||+|||++++|+.+++++.++++.+++++++..+|+|+||.+|++|.+
T Consensus 392 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~ 471 (588)
T PRK13657 392 ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ 471 (588)
T ss_pred EEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEee
Q 000830 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 521 LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 600 (1265)
|||||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|
T Consensus 472 LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999887899999999999999999999999999999999
Q ss_pred CcchhccCCchHHHHHHHHHH
Q 000830 601 SHEELISNPNSAYAALVQLQE 621 (1265)
Q Consensus 601 ~~~~l~~~~~~~~~~~~~~~~ 621 (1265)
+|+++++. ++.|++++..+.
T Consensus 552 ~~~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 552 SFDELVAR-GGRFAALLRAQG 571 (588)
T ss_pred CHHHHHHC-CChHHHHHHHhh
Confidence 99999987 789999887553
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-79 Score=691.62 Aligned_cols=507 Identities=24% Similarity=0.346 Sum_probs=430.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHH
Q 000830 742 ILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTIL 821 (1265)
Q Consensus 742 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~ 821 (1265)
...=++++...+..+...+..+.+..++...+|.++|+++...+..-..+ -.+|+++||+..|++.+|+.+-..+..+
T Consensus 62 a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r--~r~gdLL~RLvaDVd~Ld~lyLRvi~P~ 139 (573)
T COG4987 62 AGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR--YRSGDLLNRLVADVDALDNLYLRVIAPA 139 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHh--cChHhHHHHHHhhHHHHhhHHHHHHhhH
Confidence 33445566677778888888888999999999999999999888776665 7799999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHH
Q 000830 822 IQNFGLVTASFVIAFILNWRITLVVVATY-PLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDK 900 (1265)
Q Consensus 822 i~~~~~~~~~~~~~~~~~~~l~lv~l~~~-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~ 900 (1265)
+..+..+.+..+...+++|.+++.+...+ .+.++..++..++-++..++.........+++.|.+.|....+.||.++.
T Consensus 140 ~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~ 219 (573)
T COG4987 140 VVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDA 219 (573)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHH
Confidence 88888777777777788888887654433 33344445555666777777777788888999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH-H
Q 000830 901 VLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYG-LALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETL-A 978 (1265)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 978 (1265)
+.+.+......+.+...+..++.++...+.+++..+... ..+|.+ .....|..+...+....+..+....++..+. .
T Consensus 220 ~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~ 298 (573)
T COG4987 220 YRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPG 298 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcch
Confidence 999999999999999999999988888888887777666 444444 3344454443333222222222222333333 4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCC
Q 000830 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSG 1058 (1265)
Q Consensus 979 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSG 1058 (1265)
.+.+......+++|+.++.+.+++...+ .++.+..+..++++||+|+||++ .+++|+|+||++++||||||+||||||
T Consensus 299 A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsG 376 (573)
T COG4987 299 AFQHLGQVIASARRLNDILDQKPEVTFP-DEQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSG 376 (573)
T ss_pred hHHHhhHHHHHHHHHhhhccCCcccCCC-ccccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCC
Confidence 4566777888999999999888776544 12122222279999999999975 457999999999999999999999999
Q ss_pred hHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHH
Q 000830 1059 KSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSF 1138 (1265)
Q Consensus 1059 KSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~ 1138 (1265)
|||++++|.|-|+|++|+|..+|+|++.++.+++|..|++++|.++||++|+|+||..++|++||||+|+|+++++++++
T Consensus 377 KSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l 456 (573)
T COG4987 377 KSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL 456 (573)
T ss_pred HHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhh
Q 000830 1139 ISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTI 1218 (1265)
Q Consensus 1139 i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 1218 (1265)
+++.|+||+|.+||+|.+||||||||++|||+||+|.+++||||||.+||++||+.|.+.|.+..+|||+|+||||+..+
T Consensus 457 ~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~l 536 (573)
T COG4987 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGL 536 (573)
T ss_pred HHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHH
Q 000830 1219 KNADQISVIESGKIIEQGTHSSLVENEDGAYFKLIN 1254 (1265)
Q Consensus 1219 ~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~ 1254 (1265)
..||||+||++|+++|+|+|.+|++ .+|.|++|++
T Consensus 537 e~~drIivl~~Gkiie~G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 537 ERMDRIIVLDNGKIIEEGTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred hhcCEEEEEECCeeeecCCHHhhhc-cccHHHHHhc
Confidence 9999999999999999999999999 7999999985
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-79 Score=757.29 Aligned_cols=543 Identities=24% Similarity=0.339 Sum_probs=473.0
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 000830 70 VSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDI 149 (1265)
Q Consensus 70 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~ 149 (1265)
++....|++++.++|.+.... . . ...+..+...++++.++..++.++..++....+.++..++|.++|++++++|+
T Consensus 9 ~~~~~~p~~~~~iid~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 9 MLQLIPPKVVGIIVDGVTEQH--M-T-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHhccCC--c-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 334445557889998754211 0 1 11122233334444455666777878888888999999999999999999999
Q ss_pred hhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 150 SLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIG-FARVWQISLVTLSIVPLIALAGGMYAYVTIG 228 (1265)
Q Consensus 150 ~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~ 228 (1265)
++|++ .++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.+++++++++|+++++...+.++.++
T Consensus 85 ~~~~~-~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 85 EFYLR-HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHcC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 589999999999999999888888888888766666666555 5899999999999999999888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 229 LIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVS 308 (1265)
Q Consensus 229 ~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 308 (1265)
..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..+...++...+..+..++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888888888777777666666667777888999
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCcccEEEEeEE
Q 000830 309 VVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVS 388 (1265)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 388 (1265)
+++.+|.++.|.++++..+......|+..+...+..+.+++++.+|+.++++.+++.+.. ....+...+.|+++||+
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG---SEPVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCCCCCCCCcEEEEEEE
Confidence 999999999999998887777777888888999999999999999999999865432211 11112234579999999
Q ss_pred EECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCc
Q 000830 389 FCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPA 468 (1265)
Q Consensus 389 f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 468 (1265)
|+|++. +.++|+|+||+++||++++|+||||||||||+++|+|+|+|++|+|.+||+++.+++..++|++|+||+|+|+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999753 3569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcC
Q 000830 469 LFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548 (1265)
Q Consensus 469 lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~t 548 (1265)
+|++|++|||+++.++.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+||||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHHHHH
Q 000830 549 SALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622 (1265)
Q Consensus 549 s~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 622 (1265)
|+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+|++++++ ++.|++++..|..
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999999998889999999999999999999999999999999999999987 7899999987653
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-79 Score=694.24 Aligned_cols=514 Identities=28% Similarity=0.417 Sum_probs=438.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHH
Q 000830 738 KKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDR 817 (1265)
Q Consensus 738 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~ 817 (1265)
......|+++.+...++.-++.+.+.++.++..++.-.++|.+.++.+.+||.+ ..+|.+.+.+.+....+...+.-.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~--~~tG~l~~~idRgsraI~~vl~~~ 151 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS--RGTGALNRIIDRGSRAISFVLSAM 151 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC--CCcchHHHHHHhhhhHHHHHHHHH
Confidence 345677888888899999999999999999999999999999999999999996 678999999999998888888777
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhc
Q 000830 818 STILIQNFGLVTASFV-IAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFC 896 (1265)
Q Consensus 818 ~~~~i~~~~~~~~~~~-~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~ 896 (1265)
+..++..++.+..... +..-.++..+++.+..+.....+.+....+..++.++..++...+.+.+.+++.|-++||+||
T Consensus 152 V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfN 231 (591)
T KOG0057|consen 152 VFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFN 231 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcc
Confidence 7766666555444432 333345555555555554444444444444455555667777888899999999999999999
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Q 000830 897 SEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGET 976 (1265)
Q Consensus 897 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1265)
.|++..++|...+.+..+...+.....++......++.....+.+.+.+..=+..+.++++.++...........++..+
T Consensus 232 nE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~L 311 (591)
T KOG0057|consen 232 NEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFL 311 (591)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHH
Confidence 99999999999999999988888877777777777776677777777887777788899999888777777778888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 000830 977 LALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSG 1056 (1265)
Q Consensus 977 ~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SG 1056 (1265)
.....++.++..-.+..+...+....... .+.+....+|.|+|+||+|.|+ |++++|+++||+|++||||||||+||
T Consensus 312 g~vyr~~~q~l~Dm~~~~~l~~~~~~i~~-~~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nG 388 (591)
T KOG0057|consen 312 GSVYRELRQALTDMRTLFILLEVDEDIQE-AALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNG 388 (591)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhhhhhhhh-ccCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCC
Confidence 77777777776666655554332211111 1112223467899999999997 44569999999999999999999999
Q ss_pred CChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchH
Q 000830 1057 SGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAH 1136 (1265)
Q Consensus 1057 SGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~ 1136 (1265)
|||||++++|+||+| ++|+|+|||+||++++++.+|+.|||||||.+||++||-+||.||++.+++||+.++||++++|
T Consensus 389 sGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~h 467 (591)
T KOG0057|consen 389 SGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLH 467 (591)
T ss_pred CCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcH
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCch
Q 000830 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLS 1216 (1265)
Q Consensus 1137 ~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ 1216 (1265)
|.+.++|+||+|.|||+|..||||||||++||||++++|+|+++|||||+||.+||+.+.+.|.....+||+|+|+||++
T Consensus 468 d~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ 547 (591)
T KOG0057|consen 468 DVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLD 547 (591)
T ss_pred HHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHHHhhc
Q 000830 1217 TIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQR 1258 (1265)
Q Consensus 1217 ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~~~~~ 1258 (1265)
++++||+|++|++|+|+|.|+|+||++ +.+.|..+|..|..
T Consensus 548 ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 548 LLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQTS 588 (591)
T ss_pred hHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccccc
Confidence 999999999999999999999999999 89999999987643
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-78 Score=758.17 Aligned_cols=570 Identities=35% Similarity=0.498 Sum_probs=490.6
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEV 122 (1265)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1265)
++.++++.+++++ .+.+.+++.++.+++....|++++.++|.+.... . ...+.....+++++.++..++.+++.
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (576)
T TIGR02204 6 LAALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKD----S-SGLLNRYFAFLLVVALVLALGTAARF 79 (576)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc----c-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555433 3455666677777777778889999999743211 1 11122223333444445566677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 123 SCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVW 202 (1265)
Q Consensus 123 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 202 (1265)
++....+.++..++|..+++++++.|.++|++ .+.|++++|+++|++.+++++...+..++..++.+++.+++++.++|
T Consensus 80 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (576)
T TIGR02204 80 YLVTWLGERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP 158 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888999999999999999999999999987 58899999999999999999988888989999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000830 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1265)
Q Consensus 203 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1265)
.+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 159 ~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (576)
T TIGR02204 159 KLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRI 238 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998889888888889999999999999999999999999999999999999999999999999988888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Q 000830 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1265)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 362 (1265)
+.......+..++..+..++++++|++.+..|.++.|.++++..+......|+..+...+..+.+++.+.+|+.++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~ 318 (576)
T TIGR02204 239 RTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAE 318 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77666666555555566667778899999999999999888877777777889999999999999999999999999765
Q ss_pred cccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEE
Q 000830 363 TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1265)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 442 (1265)
++.+..........+..+.|+++||+|+|+++.++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 319 PDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred CcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 43221111111111234579999999999854335799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCC
Q 000830 443 LDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1265)
Q Consensus 443 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1265)
+||.++.+++.+++|++|+||||+|++|++||+|||.++.|+.++++++++++.+++.+++..+|+|++|.+||+|.+||
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCc
Q 000830 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1265)
Q Consensus 523 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 602 (1265)
||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~ 558 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred chhccCCchHHHHHHHHH
Q 000830 603 EELISNPNSAYAALVQLQ 620 (1265)
Q Consensus 603 ~~l~~~~~~~~~~~~~~~ 620 (1265)
++++++ ++.|++++..|
T Consensus 559 ~~l~~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 559 AELIAK-GGLYARLARLQ 575 (576)
T ss_pred HHHHHc-CChHHHHHhhc
Confidence 999886 78999887654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-78 Score=757.58 Aligned_cols=565 Identities=30% Similarity=0.466 Sum_probs=501.0
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1265)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 765 (1265)
.++.+.+++++.+..+.+++++.+++.+..++.+...++..+... .......+..+++++.++..++.+++.++....
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (571)
T TIGR02203 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR--DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWV 81 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777666666666655554333211 111222233455666677788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1265)
Q Consensus 766 ~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv 845 (1265)
+.++..++|..+++++++.|.++|++ .++|++++|+++|++.++..+...+..++..++.++++++++++++|.++++
T Consensus 82 ~~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i 159 (571)
T TIGR02203 82 SNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI 159 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999986 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000830 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1265)
Q Consensus 846 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1265)
+++..|+.++..++..+..+....+..+...+..+.+.|.++|+++||+++.++++.++|.+..++..+...+..+..+.
T Consensus 160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (571)
T TIGR02203 160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888777777788888888899999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 000830 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1265)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 1005 (1265)
...+..++..+...+.+++|..++..+.++++.++++..+......++..+......+..+..+.+|+.++++.+++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 88888888888889999999999999999999999999988889999999999999999999999999999876554322
Q ss_pred CCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccC
Q 000830 1006 DIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIK 1085 (1265)
Q Consensus 1006 ~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~ 1085 (1265)
.. ....+..+.|+++||+|+|+++ +.++|+|+||+|+|||+++|+|+||||||||+++|.|+|+|++|+|++||+|++
T Consensus 320 ~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~ 397 (571)
T TIGR02203 320 GT-RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLA 397 (571)
T ss_pred CC-CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHH
Confidence 11 1112235689999999999754 357999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcccEEEecCCCCCcccHHHHhccCCC-CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1086 RLNLKSLRKHIALVQQEPALFATSIYENILYGKD-GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1086 ~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~-~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
+++.+++|++++||||+|++|+|||||||.++.+ +.++++++++++.+++++++.++|+||||.+||+|.+||||||||
T Consensus 398 ~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQR 477 (571)
T TIGR02203 398 DYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQR 477 (571)
T ss_pred hcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHH
Confidence 9999999999999999999999999999999886 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhc
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
||||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++|++
T Consensus 478 iaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~- 556 (571)
T TIGR02203 478 LAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA- 556 (571)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH-
Confidence 9999999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCcHHHHHHHHhh
Q 000830 1245 EDGAYFKLINLQQ 1257 (1265)
Q Consensus 1245 ~~g~f~~l~~~~~ 1257 (1265)
.++.|+++++.+.
T Consensus 557 ~~~~~~~~~~~~~ 569 (571)
T TIGR02203 557 RNGLYAQLHNMQF 569 (571)
T ss_pred cCCHHHHHHHHhh
Confidence 5789999988653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-77 Score=749.82 Aligned_cols=564 Identities=27% Similarity=0.391 Sum_probs=474.0
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1265)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 763 (1265)
++++..+.++++..+.+..++.++..+.....++.+..+++..... .......++++++.++..+..++..++..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK-----GDIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667776666666666655555555555555555443211 11111222233333333333444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1265)
Q Consensus 764 ~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 843 (1265)
+...+...+++.++|+++++.|..+|++ .++|++++|+++|++.+...+...+..++..++..++.+++++.++|.++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666667779999999999999986 78999999999999999988888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000830 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1265)
Q Consensus 844 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1265)
+++++.+|+.++......+..+....+..+......+.+.|.++|+++||+|+.++.+.+++.+..++..+...+.....
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877766666666666666667777888899999999999999999999999999999999888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000830 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1265)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1003 (1265)
.....+.+++......+++++|.+++..|.++++.+++...+......++..+...+..+..+..+.+|+.++.+.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777788888888888899999999999999999998888888888888888888999999999999999988765442
Q ss_pred cCCCC-cccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCc
Q 000830 1004 IGDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI 1082 (1265)
Q Consensus 1004 ~~~~~-~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~ 1082 (1265)
..... ...++..+.|+++||+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~ 397 (588)
T PRK13657 320 RDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397 (588)
T ss_pred CCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 21111 1112234679999999999743 45899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1083 DIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1083 di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
|+++++.+++|++|+||||||.+|+|||||||.+++++.+|++++++++.+++++++.++|+|+||.+|++|.+||||||
T Consensus 398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 398 DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred EhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
|||||||||+++|+|||||||||+||++||+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|++|+
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHhh
Q 000830 1243 ENEDGAYFKLINLQQ 1257 (1265)
Q Consensus 1243 ~~~~g~f~~l~~~~~ 1257 (1265)
+ .++.|+++++.+.
T Consensus 558 ~-~~~~y~~l~~~~~ 571 (588)
T PRK13657 558 A-RGGRFAALLRAQG 571 (588)
T ss_pred H-CCChHHHHHHHhh
Confidence 8 5899999998664
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=742.49 Aligned_cols=520 Identities=21% Similarity=0.252 Sum_probs=438.7
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 687 LYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKI--TILFCCAAVITVIVHAIEHLSFGI 764 (1265)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~ 764 (1265)
++++.+++++.+..+.+++++........++.+...++...... .....+ ...+.++.++..++.++..++...
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMP----PVLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665555555544444555555554332110 011111 111223445566777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 765 MGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL 844 (1265)
Q Consensus 765 ~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~l 844 (1265)
.+.++..++|.++|+++++.|..||++ +++|++++|+++|++.++..+...+..++..+..++++++++++++|.+++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999986 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000830 845 VVVATYPLIISGH-ISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1265)
Q Consensus 845 v~l~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1265)
++++.+|++.+.. ++..+..+...++.++...+..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+..+..
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877765544 333333344455566677788899999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000830 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1265)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1003 (1265)
+....+..++..+...+.+|+|.+++..|.++.+.+.+...+......++..+......+..+..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888888888899999999999999999888877777777788888888889999999999999999776543
Q ss_pred cCCCC---cccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEEC
Q 000830 1004 IGDIG---EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVD 1080 (1265)
Q Consensus 1004 ~~~~~---~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1080 (1265)
..... ...++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 22111 1112235679999999999753 359999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChh
Q 000830 1081 GIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160 (1265)
Q Consensus 1081 G~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1160 (1265)
|+|++++ .+++|++|+||||||+||+|||||||++|.++++|+++++|++.+++++++.+||+||||.|||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCc
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRL 1215 (1265)
Q Consensus 1161 QkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl 1215 (1265)
||||||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999998999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-76 Score=738.53 Aligned_cols=565 Identities=28% Similarity=0.389 Sum_probs=479.2
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFG 763 (1265)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 763 (1265)
.++++++.+++++.+..+++++++..++.+..++.++..++...... ....+.+.++++.++..+..++...+..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS-----DVLPTLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888777777777777766667777777666543211 1111112222223333344444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 764 IMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRIT 843 (1265)
Q Consensus 764 ~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 843 (1265)
....++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666677779999999999999996 78999999999999999999988888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000830 844 LVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923 (1265)
Q Consensus 844 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1265)
+++++.+|+.++......+..+....+..+...+..+.+.|.++|+++||+|+.++.+.+++.+..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887777776666666666666777888899999999999999999999999999999888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000830 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV 1003 (1265)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 1003 (1265)
++...+..++..+...+.+++|.+++..+.++.+.+++...+......++..+......+..+..+.+|+.++.+.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 77777777777777888899999999999999999988888887788888888888889999999999999998765432
Q ss_pred cCCCC-cccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCc
Q 000830 1004 IGDIG-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI 1082 (1265)
Q Consensus 1004 ~~~~~-~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~ 1082 (1265)
..... ...++..+.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 320 ~~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 397 (585)
T TIGR01192 320 EEPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397 (585)
T ss_pred cCCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE
Confidence 21111 1112235679999999999743 35899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1083 DIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1083 di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
|+++++.+++|++++||||||.+|++|++|||.++.++.++++++++++.+++++++.++|+|+||.+|++|.+||||||
T Consensus 398 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
|||+|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHhhc
Q 000830 1243 ENEDGAYFKLINLQQR 1258 (1265)
Q Consensus 1243 ~~~~g~f~~l~~~~~~ 1258 (1265)
+ .+|.|+++++.+..
T Consensus 558 ~-~~~~y~~l~~~~~~ 572 (585)
T TIGR01192 558 Q-KDGRFYKLLRRSGL 572 (585)
T ss_pred H-CCChHHHHHHhCcc
Confidence 8 68999999988753
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-77 Score=737.58 Aligned_cols=525 Identities=23% Similarity=0.303 Sum_probs=456.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 58 MSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMR 137 (1265)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR 137 (1265)
+.++++++++.+++.+..|+++++++|.+.... .. ...+..+...+++++++..++.++..++..+.+.++..++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAG---EP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777888888889999999763111 01 12223334445555666778889999999999999999999
Q ss_pred HHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 138 MAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIAL 217 (1265)
Q Consensus 138 ~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~ 217 (1265)
.++|++++++|+.+|++ .++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++.+|++++
T Consensus 81 ~~l~~~l~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQG-RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHhCCchhhcc-CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999987 58999999999999999999999889999988888889999999999999999988898888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 218 AGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLF 297 (1265)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1265)
+..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888889999999999999999999999999999999999999999988888887777776666665555555
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCC
Q 000830 298 LSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDK 377 (1265)
Q Consensus 298 ~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 377 (1265)
+..+++++++++.+..|.++.|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+++... .. .....
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~--~~-~~~~~ 316 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG--KA-PVTAA 316 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--Cc-CCCCC
Confidence 5555555566666678999999988877776677778888888999999999999999999975432111 11 11111
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHh
Q 000830 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1265)
Q Consensus 378 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1265)
..+.|+++||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 23579999999999853 34699999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
++|+||+|+|++|++||+|||.++.++.+++++.++++.+++++++.++|+|+||.+||+|.+||||||||++||||+++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEE
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVV 591 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l 591 (1265)
+|+|+|||||||+||+++++.+.+.+.++.+++|+|+||||+++++.||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999988899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-76 Score=741.42 Aligned_cols=566 Identities=34% Similarity=0.533 Sum_probs=484.2
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIM 765 (1265)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 765 (1265)
.++++.+++++.+...+++.++.+......++.+..+++..+.... ......+..+++++.++..+..+.+.++....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666555555555555555554332111 11122233334444455566677788888889
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 766 GERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLV 845 (1265)
Q Consensus 766 ~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv 845 (1265)
+.++..++|..+++++++.|..+|+. ..+|++++|+++|++.+++.+...+..++..++.+++++++++.++|.++++
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999986 7799999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000830 846 VVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925 (1265)
Q Consensus 846 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1265)
+++.+|+.++..++..+..+...++..+......+.+.|.++|+++||+++.++++.++|.+..++..+...+.......
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777777777777777777777888889999999999999999999999999999998888877777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 000830 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIG 1005 (1265)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 1005 (1265)
...+..++.+....+.+++|.+++..+.++.+.+++...+......++..+...+..+..+..+.+|+.++++.+++...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 66666666666777788899999999999999998888888888889999999999999999999999999876554221
Q ss_pred CC-C-cccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcc
Q 000830 1006 DI-G-EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID 1083 (1265)
Q Consensus 1006 ~~-~-~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d 1083 (1265)
.. . ....+..+.|+|+||+|+|++++++++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 11 1 111123467999999999986433579999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1084 IKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1084 i~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
+++++.+++|++++||||||++|+|||||||.++.++.++++++++++.+++.++++++|+|+||++||+|.+|||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
||+||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|++
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cCCcHHHHHHHHh
Q 000830 1244 NEDGAYFKLINLQ 1256 (1265)
Q Consensus 1244 ~~~g~f~~l~~~~ 1256 (1265)
.++.|++|++.|
T Consensus 564 -~~~~~~~l~~~~ 575 (576)
T TIGR02204 564 -KGGLYARLARLQ 575 (576)
T ss_pred -cCChHHHHHhhc
Confidence 789999999765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=737.60 Aligned_cols=514 Identities=27% Similarity=0.389 Sum_probs=456.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHH
Q 000830 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRST 819 (1265)
Q Consensus 740 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~ 819 (1265)
+.++++++.++..++.++..++....+.+...++|.++|+++++.|++||++ +++|++++|+++|++.++..+...+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~i~srl~~Dv~~i~~~~~~~~~ 115 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR--HRTGDLMARATNDVDRVVFAAGEGVL 115 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444555566777777788888999999999999999999999999986 78999999999999999988777777
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccH
Q 000830 820 ILIQNFGLVTASFVIA-FILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSE 898 (1265)
Q Consensus 820 ~~i~~~~~~~~~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e 898 (1265)
.++..++..+++++++ ++++|.+++++++.+|+.++......+..++..++.++...+..+.+.|.++|+++||+|+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e 195 (569)
T PRK10789 116 TLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLE 195 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhccc
Confidence 7777766655555555 589999999999888888877777777766666677777788889999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 899 DKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978 (1265)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1265)
+.+.++|.+..++..+...+..+..+....+......+...+.+++|.+++..+.++.+.+++...+......++..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~ 275 (569)
T PRK10789 196 DRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAW 275 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888777777777777777777777888999999999999999998888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCC
Q 000830 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSG 1058 (1265)
Q Consensus 979 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSG 1058 (1265)
....+..+..+.+|+.++++.+++.... ....++.++.|+|+||+|+|+.. +.++|+|+||+|+|||++|||||||||
T Consensus 276 ~~~~~~~~~~a~~ri~~ll~~~~~~~~~-~~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 276 MFNIVERGSAAYSRIRAMLAEAPVVKDG-SEPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCC-CCCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCC
Confidence 8999999999999999999866543211 11122335689999999999753 346899999999999999999999999
Q ss_pred hHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHH
Q 000830 1059 KSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSF 1138 (1265)
Q Consensus 1059 KSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~ 1138 (1265)
||||+++|+|+|+|++|+|++||+|+++++.+++|++++||||+|++|++|+||||.++.++.++++++++++.++++++
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhh
Q 000830 1139 ISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTI 1218 (1265)
Q Consensus 1139 i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 1218 (1265)
+.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++
T Consensus 434 i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~ 513 (569)
T PRK10789 434 ILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL 513 (569)
T ss_pred HHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred hccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHHHhhc
Q 000830 1219 KNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQR 1258 (1265)
Q Consensus 1219 ~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~~~~~ 1258 (1265)
..||+|++|++|+++|.|+|++|++ .+|.|+++++.|..
T Consensus 514 ~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~~~~ 552 (569)
T PRK10789 514 TEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRYQQL 552 (569)
T ss_pred HcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHHhhh
Confidence 9999999999999999999999998 68999999987654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-77 Score=671.32 Aligned_cols=554 Identities=22% Similarity=0.287 Sum_probs=453.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 55 YILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAA 134 (1265)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1265)
+..+.++++++++..+....+..+.|+++..-... +......+......+=++++...+..|...+..+....++..
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia---g~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~ 91 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA---GLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLS 91 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44556777777766665555555677777653221 110001111112222345666778889999999999999999
Q ss_pred HHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000830 135 KMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIV-P 213 (1265)
Q Consensus 135 ~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~-p 213 (1265)
++|.++|+++...+..-..+ .++||+++|+..|++.+++.+-..+.+.+..+..+.+..+.+-+++|.+++.+...+ .
T Consensus 92 ~lRv~~f~kl~p~sp~~~~r-~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~ 170 (573)
T COG4987 92 ALRVRLFEKLEPLSPALLLR-YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLL 170 (573)
T ss_pred HHHHHHHHhhccCChHHHHh-cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999988876 588999999999999999999999988888888777777777788998876554433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 214 LIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMH 293 (1265)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1265)
+++++..++.+..++..++..+..+...+.+.|.+.|....+.||.++.+.+.+++.-..+.+...|..++.++...+..
T Consensus 171 ~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~ 250 (573)
T COG4987 171 LLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILL 250 (573)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777778888888888899999999999999999999999999999999999999999999888888877777
Q ss_pred HHHHHHHH-HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 000830 294 CVLFLSWS-LLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAA-PDITAFIRAKAAAYPIFEMIERDTMSKASSKT 371 (1265)
Q Consensus 294 ~~~~~~~~-~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~ 371 (1265)
++..+..+ .++|.++ .+..|..+.-.....++.++....++..+. ..+....+...|+.|+.++++.+++...+ +
T Consensus 251 l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~--~ 327 (573)
T COG4987 251 LIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP--D 327 (573)
T ss_pred HHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC--c
Confidence 66655555 4445443 233344432222222222222222333333 45677888899999999999887765432 1
Q ss_pred CCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCC
Q 000830 372 GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL 451 (1265)
Q Consensus 372 ~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~ 451 (1265)
.........++++||+|+||++ +.++|+|+||++++||++||+|+|||||||++++|.|.|+|++|+|.++|.++..+
T Consensus 328 -~~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l 405 (573)
T COG4987 328 -EQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL 405 (573)
T ss_pred -cccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC
Confidence 1111222279999999999965 45799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
+.+.+|+.|++++|.++||++|+|||+.+++|++++|+++++++.+++++++++.|+|++|.+||.|..||||||||+||
T Consensus 406 ~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAl 485 (573)
T COG4987 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL 485 (573)
T ss_pred ChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCch
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1265)
||+|++|+|++||||||.+||+.||+++++.|.+..+|||+|+||||+..++.||+|+||++|+|+|+|+|.+|+.+ ++
T Consensus 486 AR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~g 564 (573)
T COG4987 486 ARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NG 564 (573)
T ss_pred HHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-cc
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999996 89
Q ss_pred HHHHHHH
Q 000830 612 AYAALVQ 618 (1265)
Q Consensus 612 ~~~~~~~ 618 (1265)
.|+++++
T Consensus 565 ~~~~l~q 571 (573)
T COG4987 565 RYKRLYQ 571 (573)
T ss_pred HHHHHhc
Confidence 9998864
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-76 Score=799.12 Aligned_cols=508 Identities=20% Similarity=0.274 Sum_probs=434.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000830 105 LDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFM 184 (1265)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~ 184 (1265)
.++++++++..++.++..++..+.+.+...++|.++++++++.|++||++ .++|+++||+++|++.+++.+...+..++
T Consensus 1009 ~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~~~ 1087 (1522)
T TIGR00957 1009 SVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKMFM 1087 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777888888899999999999999999999999997 59999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Q 000830 185 HYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAV 264 (1265)
Q Consensus 185 ~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~ 264 (1265)
..++.+++.++++++.+|.++++++.++++.+++..++.+..+...+......+...+.+.|+++|+++||+|++|+.+.
T Consensus 1088 ~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~ 1167 (1522)
T TIGR00957 1088 GSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFI 1167 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHH
Confidence 99999999999988888877766665566666666666666666666677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHHHHhhHHHHH
Q 000830 265 KVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVH-KHISNGGESFTTMLNVVIAGLSLGQAAPDIT 343 (1265)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 343 (1265)
+++.+..+...+..........+......++.. .++++.+.+.+. .+.+++|.+..++.+......++..+...+.
T Consensus 1168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~ 1244 (1522)
T TIGR00957 1168 HQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSS 1244 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888877766655544444333333333222 223334444443 5778999888877777777788888999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccCCC--CCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCC
Q 000830 344 AFIRAKAAAYPIFEMIERDTMSKASSKTGRK--LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGS 421 (1265)
Q Consensus 344 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGs 421 (1265)
.+..+.+|.+|+.++++.+++.+.......+ .++..|.|+|+||+|+|+++. .++|+|+||+|+|||++||||+|||
T Consensus 1245 ~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGs 1323 (1522)
T TIGR00957 1245 EMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGA 1323 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCC
Confidence 9999999999999999766543211111111 124568899999999997542 4699999999999999999999999
Q ss_pred cHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHH
Q 000830 422 GKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501 (1265)
Q Consensus 422 GKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~ 501 (1265)
|||||+++|.|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.... +++++++++|++.+++++
T Consensus 1324 GKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~ 1402 (1522)
T TIGR00957 1324 GKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKT 1402 (1522)
T ss_pred CHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHH
Confidence 9999999999999999999999999999999999999999999999999999999998332 578999999999999999
Q ss_pred HHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 000830 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581 (1265)
Q Consensus 502 ~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 581 (1265)
+|.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||+++
T Consensus 1403 ~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1403 FVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1482 (1522)
T ss_pred HHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHH
Q 000830 582 IRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (1265)
Q Consensus 582 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 619 (1265)
+.+||+|+||++|+|+|.|+|+||+++ ++.|+++++.
T Consensus 1483 i~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1483 IMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 999999999999999999999999987 7999998864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-79 Score=667.54 Aligned_cols=491 Identities=30% Similarity=0.425 Sum_probs=429.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000830 759 HLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFV-IAFI 837 (1265)
Q Consensus 759 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~-~~~~ 837 (1265)
..++...++.+.+.+--+.|.|+.++++.|+-. ..+|.+...+......++..+...+...+..++-+....+ +...
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 345677788888899999999999999999875 5667666666666666666666666666655554444444 4457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHH
Q 000830 838 LNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSF 917 (1265)
Q Consensus 838 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 917 (1265)
++|+.+++.+.++.+.+++.....-......++..++.+.++....+++-+.+|+|.|+.|+.+..+|.+.++.+.+...
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 89999999888888877776666666666667777788888899999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000830 918 IRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVL 997 (1265)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~ 997 (1265)
+.....++.......+...........+...+..+.+|.++++..-.++.....++........++.++..-.++.++++
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 77766666666666666666667777778888889999999888777777888888888888888999999999999998
Q ss_pred cccccccCC-CCcccC-CCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc
Q 000830 998 DRKTQVIGD-IGEELT-NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075 (1265)
Q Consensus 998 ~~~~~~~~~-~~~~~~-~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G 1075 (1265)
+.+.+.... ..++.+ -..|.|.|+||+|.|. |..|+|+|+||++++|+++||||+||+||||+.++|+|||++++|
T Consensus 241 ~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred ccchhhccCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 877665433 233334 3468899999999997 456899999999999999999999999999999999999999999
Q ss_pred EEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCC
Q 000830 1076 KVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGV 1155 (1265)
Q Consensus 1076 ~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~ 1155 (1265)
.|.|||+|++++..+++|+.||+||||.+||+.|+..|+.||+|+++++|+++|++.+++++||+++|+||||.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEe
Q 000830 1156 QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQ 1235 (1265)
Q Consensus 1156 ~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~ 1235 (1265)
.||||||||+||||++|++|+||+|||||||||..||++||.+|++..+++|.++|||||+||.+||.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcCCcHHHHHHH
Q 000830 1236 GTHSSLVENEDGAYFKLIN 1254 (1265)
Q Consensus 1236 Gt~~eLl~~~~g~f~~l~~ 1254 (1265)
|+|+||++ .+|.|++||.
T Consensus 479 g~h~~ll~-~~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLA-AGGLYAEMWR 496 (497)
T ss_pred CcHHHHHH-cCChHHHHhc
Confidence 99999999 6999999995
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-76 Score=791.82 Aligned_cols=508 Identities=22% Similarity=0.294 Sum_probs=403.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHH
Q 000830 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182 (1265)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~ 182 (1265)
+.+++++++++..++.+++.++..+.+.+...++|.++++++++.|++||++ +++|+++||+++|++.+++.+...+..
T Consensus 955 ~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777788888888889999999999999999999999999998 589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 000830 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIAL-AGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED 261 (1265)
Q Consensus 183 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~ 261 (1265)
++..++.+++.++++++++|. .++.+++++++++ +..++.+..++..+......+...+++.|+++|+++||+|++++
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~-~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTI-SLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 999999888888888888873 3333333333222 22233344444444455566778899999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc---------cchhHHHHHHHHHHHH
Q 000830 262 KAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVW-YVSVVVHKHI---------SNGGESFTTMLNVVIA 331 (1265)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~---------~~~g~~~~~~~~~~~~ 331 (1265)
++.+++.+..+...+.. ........+..+...+...++++ .+.+.+..+. .+.|.+++ +....
T Consensus 1113 ~f~~~~~~~~~~~~~~~----~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~~~ 1185 (1622)
T PLN03130 1113 RMAEINGRSMDNNIRFT----LVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YALNI 1185 (1622)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHHHH
Confidence 77776666554443332 22221111111111111122222 2333333321 12233332 22223
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccC--CCCCCCcccEEEEeEEEECCCCCCCccccceeEEecC
Q 000830 332 GLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTG--RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPA 409 (1265)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~ 409 (1265)
..++..+......+..+.+|.+|+.++++.+++.+...+.. .+.++..|.|+|+||+|+|+++ .+++|+|+||+|+|
T Consensus 1186 ~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~ 1264 (1622)
T PLN03130 1186 TSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISP 1264 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcC
Confidence 33455555666778899999999999998765532111111 1122456789999999999643 24699999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHH
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEE 489 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~ 489 (1265)
||++||||+||||||||+++|+|+|+|++|+|.|||+|+++++++++|++|++|||||.||+|||||||.++. ..++++
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdee 1343 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDAD 1343 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 578999
Q ss_pred HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCC
Q 000830 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVG 569 (1265)
Q Consensus 490 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~ 569 (1265)
+++|++.++++++|.++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..++
T Consensus 1344 i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~ 1423 (1622)
T PLN03130 1344 LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1423 (1622)
T ss_pred HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHHHH
Q 000830 570 RTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1265)
Q Consensus 570 ~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1265)
+|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|++|++.+.
T Consensus 1424 ~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1424 CTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999876789999987654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-78 Score=699.12 Aligned_cols=486 Identities=29% Similarity=0.469 Sum_probs=377.7
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCC----cceEEECCeeCCCCChHH
Q 000830 381 HIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL----SGEILLDGNNIKGLDLKW 455 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~----~G~i~~~g~~~~~~~~~~ 455 (1265)
-++++|++..|..... ..+++||||++.+||++||||+|||||||+++.|+|+.++. +|+|.++|+|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975432 25899999999999999999999999999999999999987 899999999998888765
Q ss_pred Hh----hheeEEccCCc-cccc--cHHHHhcc----CCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChH
Q 000830 456 LR----QQIGLVNQEPA-LFAT--TIRENILY----GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1265)
Q Consensus 456 ~r----~~i~~v~Q~~~-lf~~--ti~~ni~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1265)
+| +.|+||||+|+ .+|. ||.+-|.- ..+. +.++.. .+..++.+.+ .+|+.... ...+..||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~-~~~ea~--~~a~elL~~V-gl~~~~~~--~~yPheLSGG 158 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG-SRAEAR--KRAVELLEQV-GLPDPERR--DRYPHQLSGG 158 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccc-cHHHHH--HHHHHHHHHc-CCCChhhh--ccCCcccCch
Confidence 53 46999999985 4543 66665542 2111 111111 1111222222 45654332 5688999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeC
Q 000830 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 525 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 601 (1265)
||||+.||+||+.+|++||+||||++||+.++.+|.+.|+++. .|.++|+|||++..+.+ ||||+||++|+++|.|+
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999986 48999999999999977 99999999999999999
Q ss_pred cchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhh
Q 000830 602 HEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKH 681 (1265)
Q Consensus 602 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1265)
.+++++++...|.+..-.. .+.
T Consensus 239 ~~~i~~~p~hpYT~~Ll~a------------------------~p~---------------------------------- 260 (539)
T COG1123 239 TEEILSNPQHPYTRGLLAA------------------------VPR---------------------------------- 260 (539)
T ss_pred HHHHHhccCCcccHHHHhh------------------------CCC----------------------------------
Confidence 9999887544443211000 000
Q ss_pred hHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 682 VSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLS 761 (1265)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 761 (1265)
T Consensus 261 -------------------------------------------------------------------------------- 260 (539)
T COG1123 261 -------------------------------------------------------------------------------- 260 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 762 FGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWR 841 (1265)
Q Consensus 762 ~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 841 (1265)
.+......
T Consensus 261 ---------------------------~~~~~~~~--------------------------------------------- 268 (539)
T COG1123 261 ---------------------------LGDEKIIR--------------------------------------------- 268 (539)
T ss_pred ---------------------------cccccccc---------------------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 000830 842 ITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQ 921 (1265)
Q Consensus 842 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 921 (1265)
T Consensus 269 -------------------------------------------------------------------------------- 268 (539)
T COG1123 269 -------------------------------------------------------------------------------- 268 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000830 922 IAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT 1001 (1265)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~ 1001 (1265)
.+.
T Consensus 269 -----------------------------------------------------------------------------~~~ 271 (539)
T COG1123 269 -----------------------------------------------------------------------------LPR 271 (539)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred cccCCCCcccCCCcccEEEEeEEEECCCC--------CCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC
Q 000830 1002 QVIGDIGEELTNVEGTIELRGVHFSYPSR--------PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073 (1265)
Q Consensus 1002 ~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~--------~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~ 1073 (1265)
....+....++++|++.+|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|+
T Consensus 272 -------~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~ 344 (539)
T COG1123 272 -------RGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344 (539)
T ss_pred -------ccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 0000012248899999999842 1246899999999999999999999999999999999999999
Q ss_pred CcEEEECCcc--cCCCCHHHHhcccEEEecCCCCC---cccHHHHhccCC---CCCC----HHHHHHHHHHhchHHHHHh
Q 000830 1074 AGKVMVDGID--IKRLNLKSLRKHIALVQQEPALF---ATSIYENILYGK---DGAS----EGEVIEAAKLANAHSFISA 1141 (1265)
Q Consensus 1074 ~G~I~idG~d--i~~~~l~~lR~~i~~VpQdp~LF---~gTIreNl~~g~---~~~s----d~ei~~al~~a~l~~~i~~ 1141 (1265)
+|+|.++|.| .+.-+...+|+++-+|+|||+-. ..||+++|.-.. .... .+.+.+.++.+++..-
T Consensus 345 ~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~--- 421 (539)
T COG1123 345 SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE--- 421 (539)
T ss_pred CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH---
Confidence 9999999977 33334566889999999999733 459999986321 1111 1235555666665431
Q ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh
Q 000830 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIK 1219 (1265)
Q Consensus 1142 lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~ 1219 (1265)
........||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|+++.+ |.|.|+|||+++.++
T Consensus 422 -------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~ 494 (539)
T COG1123 422 -------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVR 494 (539)
T ss_pred -------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHH
Confidence 23344567999999999999999999999999999999999999999999999875 689999999999999
Q ss_pred c-cCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHHHh
Q 000830 1220 N-ADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256 (1265)
Q Consensus 1220 ~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~~~ 1256 (1265)
. ||||+||++|+|||.|+.+++.+++...|.+..-..
T Consensus 495 ~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 495 YIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAA 532 (539)
T ss_pred hhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 8 999999999999999999999998888998876543
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-75 Score=721.96 Aligned_cols=532 Identities=21% Similarity=0.259 Sum_probs=456.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 59 SLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRM 138 (1265)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 138 (1265)
++.++++++..++....|++++.++|.+.... . ...+..+...++++.++..++.++..++....+.++..++|.
T Consensus 9 ~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 9 IIVGLFSFVINILMLAPPLYMLQVYDRVLTSG----S-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666778999999754211 1 122223333444455566778888888899999999999999
Q ss_pred HHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 139 AYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSE-KVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIAL 217 (1265)
Q Consensus 139 ~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~ 217 (1265)
++|+|++++|+.. .++..+++++|++.+++.+.. .+..++..++.++ .++++++++|.+++++++.+|++++
T Consensus 84 ~~~~~ll~~~~~~------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 84 PIFAASFSATLRR------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHhcCcccC------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999832 256788999999999998877 4555555555444 4567899999999998888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 218 AGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLF 297 (1265)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1265)
+..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+....+..++..
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888899999999999999999999999999999999999999999888888888877777776666666
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCC
Q 000830 298 LSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDK 377 (1265)
Q Consensus 298 ~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 377 (1265)
+..++++++|++++.+|.++.|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+++.+. . ...+.
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~-~~~~~ 312 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---A-MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---C-CCCCC
Confidence 6777788899999999999999999888777777789999999999999999999999999976544221 1 11122
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHh
Q 000830 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR 457 (1265)
Q Consensus 378 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 457 (1265)
..+.|+++||+|+|++. ++++|+|+||+++|||+++||||||||||||+++|+|+|+|++|+|.+||+++.+++.+++|
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 34579999999999743 34689999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 458 QQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
++++||||+|++|++|++|||.++.++.+++++.++++.++++++++.+|+|+||.+||+|.+||||||||++||||+++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred hheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhcc
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
+|++||||||||+||+++++.+.+.|.++. +++|+|+||||++.++.||+|++|++|++++.|+|+|+++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999885 6899999999999999999999999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-75 Score=720.25 Aligned_cols=528 Identities=26% Similarity=0.323 Sum_probs=449.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 695 WTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVR 774 (1265)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr 774 (1265)
|+.+..+++++++.+...+..++.+++.++....... .......+.+.+++++++..++.+++.++....+.+...++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666664431111 112233445556666677788888999999999999999999
Q ss_pred HHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 775 EKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLII 854 (1265)
Q Consensus 775 ~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~ 854 (1265)
.++|+++++.|..||++ .++|++++|+++|++.++..+...+..++..+..+++++++++.++|.+++++++.+|+.+
T Consensus 81 ~~l~~~l~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQG--RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhcc--CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999986 8999999999999999999999888888888888888889999999999999998888877
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 855 SGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFI 934 (1265)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1265)
+..+...+..+...++.++...+..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+..+.......+..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666677777788889999999999999999999999999999988888877777766666666666666
Q ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccCCC
Q 000830 935 FSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNV 1014 (1265)
Q Consensus 935 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~ 1014 (1265)
.+...+...++++.+..+.++.+.++....+......++..+......+..+..+.+|+.++++.+++..... ...++.
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~~~~ 317 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVTAAP 317 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCCCCC
Confidence 6555555555555666888999998877777777778888888899999999999999999997543321111 111122
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhc
Q 000830 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK 1094 (1265)
Q Consensus 1015 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 1094 (1265)
.+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+
T Consensus 318 ~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 318 APSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 4689999999999854 346899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000830 1095 HIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174 (1265)
Q Consensus 1095 ~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~ 1174 (1265)
+++||||||++|++||||||.++.++.+|+++++|++.++++++++++|+||||.+||+|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEE
Q 000830 1175 PEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVI 1227 (1265)
Q Consensus 1175 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl 1227 (1265)
|+|||||||||+||++||+.+++.+++..+++|+|+||||+++++.||+|+||
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-75 Score=781.42 Aligned_cols=512 Identities=20% Similarity=0.258 Sum_probs=406.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHH
Q 000830 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGN 182 (1265)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~ 182 (1265)
+...+++++++..++.+++.++..+.+.+...++|.++++++++.|++||++ +++|+++||+++|++.+++.+...+..
T Consensus 952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~~ 1030 (1495)
T PLN03232 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMNM 1030 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHHH
Confidence 4455666667777888888888889999999999999999999999999997 589999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 000830 183 FMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAG-GMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED 261 (1265)
Q Consensus 183 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~ 261 (1265)
++..++.+++.+++++++++.. +++++++++++.+. .++.+..++..+......+...+.+.|+++|+++||+|++++
T Consensus 1031 ~~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232 1031 FMNQLWQLLSTFALIGTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence 8888888888888887777533 22222222222222 222333344555556677788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc----hhHHHH-HHHHHHHHHHHH
Q 000830 262 KAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHK-HISN----GGESFT-TMLNVVIAGLSL 335 (1265)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~----~g~~~~-~~~~~~~~~~~l 335 (1265)
++.+++.+..+...+..........+.... +..+..+++++.+.+.+.. +... .+..+. ++.+......++
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 1186 (1495)
T PLN03232 1110 RMAKINGKSMDNNIRFTLANTSSNRWLTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLL 1186 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHH
Confidence 887777766555444333221111111111 1111122222233333332 2211 111121 222333344566
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhccccccccccccC--CCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEE
Q 000830 336 GQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTG--RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIV 413 (1265)
Q Consensus 336 ~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~ 413 (1265)
..+...+..+..+.+|.+|+.++++.+++.+...... .+.++..|.|+|+||+|+|+++ .+++|+|+||+|+|||++
T Consensus 1187 ~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gekv 1265 (1495)
T PLN03232 1187 SGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKV 1265 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEE
Confidence 7777888899999999999999998765532211111 1112446789999999999643 246999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHH
Q 000830 414 ALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRA 493 (1265)
Q Consensus 414 ~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~ 493 (1265)
||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.||+|||||||.++. +++++++++|
T Consensus 1266 aIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~a 1344 (1495)
T PLN03232 1266 GVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEA 1344 (1495)
T ss_pred EEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875 5789999999
Q ss_pred HHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEE
Q 000830 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTV 573 (1265)
Q Consensus 494 ~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i 573 (1265)
++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|
T Consensus 1345 l~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI 1424 (1495)
T PLN03232 1345 LERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTML 1424 (1495)
T ss_pred HHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHHHH
Q 000830 574 VVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1265)
Q Consensus 574 ~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1265)
+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1425 ~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1425 VIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999999999999999999999999999999999885579999987653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=777.24 Aligned_cols=512 Identities=19% Similarity=0.234 Sum_probs=417.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000830 107 FVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHY 186 (1265)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~ 186 (1265)
++++.++..++.++..++....+.+...++|.++|+++++.|+.||++ +++|+++||+++|++.+++.+...+..++..
T Consensus 1004 y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~ 1082 (1560)
T PTZ00243 1004 YLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLYLLQC 1082 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555667778899999999999999999998 5999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 000830 187 ISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKV 266 (1265)
Q Consensus 187 ~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~ 266 (1265)
++.+++.++++++.+|.+.++++.++.+...+..++.+..+...+......+...+.++|+++|+++||+|++|+.+.++
T Consensus 1083 ~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~ 1162 (1560)
T PTZ00243 1083 LFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQE 1162 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHH
Confidence 99999999999988885443322222223333444555556666666677788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000830 267 YKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVV--VHKHISNGGESFTTMLNVVIAGLSLGQAAPDITA 344 (1265)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (1265)
|.+..+...+...+......+......++..+...++.+++... ...+.++.|.+..++.+......++..+...+..
T Consensus 1163 ~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~ 1242 (1560)
T PTZ00243 1163 ALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVAT 1242 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887776665544444444434444333333333333332 2234466776655555556666788888888999
Q ss_pred HHHHHHHHHHHHHHhcccccccccc-------------------------cc-CC---CCCCCcccEEEEeEEEECCCCC
Q 000830 345 FIRAKAAAYPIFEMIERDTMSKASS-------------------------KT-GR---KLDKLSGHIEFKDVSFCYPSRP 395 (1265)
Q Consensus 345 ~~~~~~a~~ri~~~l~~~~~~~~~~-------------------------~~-~~---~~~~~~~~i~~~~v~f~y~~~~ 395 (1265)
+..++.+.+|+.++++..++.+... +. .. +.++..|.|+|+||+|+|++.
T Consensus 1243 le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~- 1321 (1560)
T PTZ00243 1243 VEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG- 1321 (1560)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-
Confidence 9999999999999996433211000 00 00 011234789999999999753
Q ss_pred CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHH
Q 000830 396 DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (1265)
Q Consensus 396 ~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 475 (1265)
..++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||.||+||||
T Consensus 1322 ~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1322 LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCcCCCCCHH
Q 000830 476 ENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN-PSILLLDEATSALDAE 554 (1265)
Q Consensus 476 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~-~~illlDE~ts~lD~~ 554 (1265)
|||..+. +++++++++|++.++++++|.++|+|+||.+||+|.+|||||||||||||||+++ |+|||||||||+||++
T Consensus 1402 eNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243 1402 QNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPA 1480 (1560)
T ss_pred HHhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHH
Confidence 9998753 6789999999999999999999999999999999999999999999999999996 8999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHHHH
Q 000830 555 SENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE 621 (1265)
Q Consensus 555 ~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 621 (1265)
|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1481 te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1481 LDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999988899999999999999999999999999999999999999866889999987653
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-76 Score=647.44 Aligned_cols=490 Identities=31% Similarity=0.418 Sum_probs=423.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000830 124 CWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLG-GFIIGFARVW 202 (1265)
Q Consensus 124 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~ 202 (1265)
++...++.....+--..|.|+.++++.|+-+ +.+|.+...+......|+..+...+...+-.++-+.. +.++...++|
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~-r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE-RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhh-cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 3455666666777788899999999999977 5889998888777777777666665555555544433 3344556899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000830 203 QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282 (1265)
Q Consensus 203 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 282 (1265)
+.++++++.+.++.++.....-......++..++-++++....+++-+..+||.|+.|+.+..+|++.++.+.+...|..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99999888887777766666655566667777888889999999999999999999999999999999999999888876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Q 000830 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERD 362 (1265)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 362 (1265)
.-.++....-..+......+....+...+..|.+|.|+++..-..+.....|+..+...+..+.+++.-+++.+++++.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 55554444344444445555666777788899999999877666666777888888889999999999999999999876
Q ss_pred cccccccccCCCCC-CCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceE
Q 000830 363 TMSKASSKTGRKLD-KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1265)
Q Consensus 363 ~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 441 (1265)
.+....+ ..++.+ ...+.+.|+||+|.|.. ..++|+++||++++|+++|+|||||+||||++++|.|||++++|.|
T Consensus 244 ~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 244 AEVSDAP-DAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred hhhccCC-CCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 6554322 222333 34578999999999974 5679999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCC
Q 000830 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521 (1265)
Q Consensus 442 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 521 (1265)
.+||+|+++...+++|+.||+||||..||++|+..||.||+|.++++|+..|++.++.++||..+|+||+|.|||+|-.|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeC
Q 000830 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 522 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 601 (1265)
|||||||+||||+++++|+||+|||+|||||.+||+.|+.+|++..+|+|.++|+|||+++-+||.|+||++|+|+|.|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccCCchHHHHHHH
Q 000830 602 HEELISNPNSAYAALVQ 618 (1265)
Q Consensus 602 ~~~l~~~~~~~~~~~~~ 618 (1265)
|+||++. +|.|++||.
T Consensus 481 h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 481 HEELLAA-GGLYAEMWR 496 (497)
T ss_pred HHHHHHc-CChHHHHhc
Confidence 9999998 999999984
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-73 Score=704.01 Aligned_cols=538 Identities=23% Similarity=0.321 Sum_probs=450.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 693 PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLR 772 (1265)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 772 (1265)
++++.+...++++++........++.+...++...... .......+.++++++.++..++.+++.++....+.++..+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG--SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555544444444555555555432111 1112233444555556667788888899999999999999
Q ss_pred HHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 773 VREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVD-RSTILIQNFGLVTASFVIAFILNWRITLVVVATYP 851 (1265)
Q Consensus 773 lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~p 851 (1265)
+|.++|+++++.|+.. .+...+++++|++.+++.+.. .+..++..+..+ +.+++++.++|++++++++..|
T Consensus 81 lr~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l~~~~ 152 (544)
T TIGR01842 81 LNQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYLLVCFLLHPWIGILALGGAV 152 (544)
T ss_pred HHHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999842 245678899999999998877 344444444443 4456788999999998888777
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000830 852 LIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQ 931 (1265)
Q Consensus 852 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1265)
++++..++..+..++..++.++...+..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+.....+....+..
T Consensus 153 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (544)
T TIGR01842 153 VLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSK 232 (544)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666566666666667777788889999999999999999999999999999999888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccc
Q 000830 932 FFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEEL 1011 (1265)
Q Consensus 932 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 1011 (1265)
++......+.+++|.+++..|.++.+.+++...+......++..+......+..+..+.+|+.++++.+++.... ...
T Consensus 233 ~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~ 310 (544)
T TIGR01842 233 YFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA--MPL 310 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC--CCC
Confidence 777777788889999999999999999998888888888899999999999999999999999999765543211 112
Q ss_pred CCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH
Q 000830 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS 1091 (1265)
Q Consensus 1012 ~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~ 1091 (1265)
++.++.|+++||+|+|++. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+.+++.+.
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 2335679999999999753 346899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000830 1092 LRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV 1171 (1265)
Q Consensus 1092 lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARAL 1171 (1265)
+|++++||||||++|++|+||||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987777899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1172 LKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1172 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
+++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||++
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999999885 6899999999999999999999999999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-74 Score=718.85 Aligned_cols=504 Identities=25% Similarity=0.402 Sum_probs=367.9
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCC----------
Q 000830 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK---------- 449 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~---------- 449 (1265)
.|+++|++++|+... +.++|+||||++++||++|||||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996322 346999999999999999999999999999999999999999999999997552
Q ss_pred CCChH---HHh-hheeEEccCC--ccccc-cHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCC
Q 000830 450 GLDLK---WLR-QQIGLVNQEP--ALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519 (1265)
Q Consensus 450 ~~~~~---~~r-~~i~~v~Q~~--~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 519 (1265)
+.+.. .+| ++||||+|+| .+++. ||.||+.++.. .....+..+ +..++.+.+ .+++ .+........
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~~l~~~-gL~~-~~~~~~~~~~ 167 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV--EAKRMLDQV-RIPE-AQTILSRYPH 167 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHHC-CCCC-hhhHHhCCCc
Confidence 12222 233 4799999998 57764 99999987531 112222111 111111211 2321 1234566778
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 000830 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1265)
Q Consensus 520 ~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i 596 (1265)
+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++. + |+|+|+|||+++.+.. ||+|++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 899999999999999999999999999999999999999999999885 3 8999999999999866 999999999999
Q ss_pred EEeeCcchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCc
Q 000830 597 VKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEP 676 (1265)
Q Consensus 597 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1265)
++.|+++++...+...|..-.. ... + ... . . ...
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~l~-----~~~----~--~~~---------~---------------------~----~~~- 281 (623)
T PRK10261 248 VETGSVEQIFHAPQHPYTRALL-----AAV----P--QLG---------A---------------------M----KGL- 281 (623)
T ss_pred cccCCHHHhhcCCCChhhhhhh-----hcc----C--ccc---------c---------------------c----ccc-
Confidence 9999988875432111110000 000 0 000 0 0 000
Q ss_pred cchhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000830 677 ATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHA 756 (1265)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 756 (1265)
T Consensus 282 -------------------------------------------------------------------------------- 281 (623)
T PRK10261 282 -------------------------------------------------------------------------------- 281 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 757 IEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAF 836 (1265)
Q Consensus 757 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 836 (1265)
..+ .-++. ..
T Consensus 282 --------------------------~~~-~~~~~--~~----------------------------------------- 291 (623)
T PRK10261 282 --------------------------DYP-RRFPL--IS----------------------------------------- 291 (623)
T ss_pred --------------------------cCC-ccccc--cc-----------------------------------------
Confidence 000 00000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHH
Q 000830 837 ILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRS 916 (1265)
Q Consensus 837 ~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~ 916 (1265)
. ..
T Consensus 292 --------------------------------------------------------------------------~-~~-- 294 (623)
T PRK10261 292 --------------------------------------------------------------------------L-EH-- 294 (623)
T ss_pred --------------------------------------------------------------------------c-cc--
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 917 FIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEV 996 (1265)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~ 996 (1265)
.+
T Consensus 295 --------------------------------------------------------------------------~~---- 296 (623)
T PRK10261 295 --------------------------------------------------------------------------PA---- 296 (623)
T ss_pred --------------------------------------------------------------------------cc----
Confidence 00
Q ss_pred hcccccccCCCCcccCCCcccEEEEeEEEECCCCC--------CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 000830 997 LDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRP--------EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~--------~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1068 (1265)
...+.... ...+.....++++||+++|+.+. ...+|+|+||+|++||++||+|+||||||||+++|.|
T Consensus 297 ~~~~~~~~----~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G 372 (623)
T PRK10261 297 KQEPPIEQ----DTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 372 (623)
T ss_pred ccCccccc----ccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 00000000 00000112599999999996321 2358999999999999999999999999999999999
Q ss_pred cCCCCCcEEEECCcccCCCCHH---HHhcccEEEecCCC--CCc-ccHHHHhccCC--CCC-CH----HHHHHHHHHhch
Q 000830 1069 FYDPTAGKVMVDGIDIKRLNLK---SLRKHIALVQQEPA--LFA-TSIYENILYGK--DGA-SE----GEVIEAAKLANA 1135 (1265)
Q Consensus 1069 l~~p~~G~I~idG~di~~~~l~---~lR~~i~~VpQdp~--LF~-gTIreNl~~g~--~~~-sd----~ei~~al~~a~l 1135 (1265)
+.+|++|+|.++|.++...+.. .+|++|+||||+|. ++. -|+.+|+.++. ... .. +++.+.++.+++
T Consensus 373 l~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL 452 (623)
T PRK10261 373 LVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL 452 (623)
T ss_pred CCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999877543 46789999999983 665 59999987531 111 11 234455555554
Q ss_pred H-HHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEe
Q 000830 1136 H-SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVA 1212 (1265)
Q Consensus 1136 ~-~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~Ia 1212 (1265)
. +.. .....+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|++..+ +.|+|+||
T Consensus 453 ~~~~~-----------~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~is 521 (623)
T PRK10261 453 LPEHA-----------WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFIS 521 (623)
T ss_pred CHHHh-----------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2 222 233457999999999999999999999999999999999999999999998753 68999999
Q ss_pred cCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCCcHHHH-HHH
Q 000830 1213 HRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAYFK-LIN 1254 (1265)
Q Consensus 1213 HRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~-l~~ 1254 (1265)
|+++.+.. ||||++|++|+|++.|+++++..++...|.+ ++.
T Consensus 522 Hdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 522 HDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 99999976 9999999999999999999998766666655 443
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-72 Score=692.59 Aligned_cols=534 Identities=19% Similarity=0.161 Sum_probs=437.4
Q ss_pred hHHHHHHhhc-hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000830 42 SLFKLFAFAD-FYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWI 120 (1265)
Q Consensus 42 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1265)
.+++++++++ +++ ..++++++++++.++.....+.+++.+++.... ... .. ...++++.++.+++.++
T Consensus 4 ~~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~----~~~--~~----~~~~~~~~~~~~~~~~~ 72 (555)
T TIGR01194 4 AIGEILALLRSPFP-AITAFSIALGLAGGLAIIALLASINNAIHEENF----LGQ--GS----LFSFGGLCLLALLFRIG 72 (555)
T ss_pred hHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----ccc--hH----HHHHHHHHHHHHHHHHH
Confidence 4667777777 554 445666677777777767766677777653110 000 01 11233344556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1265)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 200 (1265)
..++....+.++..++|.++|+|++++|+.+|++ .++|++++|+++|++.+++++.. ++.++..++.+++.+++++++
T Consensus 73 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 150 (555)
T TIGR01194 73 ADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYL 150 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999997 58999999999999999999864 777888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH--HHHHHHHHHHHHHHHHH
Q 000830 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED--KAVKVYKEALSNTYKYG 278 (1265)
Q Consensus 201 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~ 278 (1265)
+|.+++++++++|+.+++..++.++.++...+.++..++.++.+.|.+.|+++||+|+.++ .+.+++++..++..+..
T Consensus 151 ~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (555)
T TIGR01194 151 SVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLH 230 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999988889888877778788888888899999999999999999999999999954 56788888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000830 279 RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEM 358 (1265)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~ 358 (1265)
.+.....+...++..++..+...+.++++++. +.++.|.+++++.+......|+..+...+..+++++++.+|+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~l 307 (555)
T TIGR01194 231 IIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADF 307 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555444444444444444444555432 678999988888877777889999999999999999999999999
Q ss_pred hcccccc--cc-ccccCC----CCCCCcccEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHH
Q 000830 359 IERDTMS--KA-SSKTGR----KLDKLSGHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISL 429 (1265)
Q Consensus 359 l~~~~~~--~~-~~~~~~----~~~~~~~~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~l 429 (1265)
++.+.+. .. .+.... ......+.|+++||+|+|++.+ +.++|+|+||++++||++|||||||||||||+++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~l 387 (555)
T TIGR01194 308 GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKL 387 (555)
T ss_pred HhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHH
Confidence 8532111 10 000000 1112245799999999997532 2369999999999999999999999999999999
Q ss_pred HHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCccc
Q 000830 430 IERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPER 509 (1265)
Q Consensus 430 l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g 509 (1265)
|+|+|+|++|+|.+||+++++++.+++|++++||+|||++|++|+++|+ .++.+++++.++++.+++++++..+|+|
T Consensus 388 l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g 464 (555)
T TIGR01194 388 FCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGG 464 (555)
T ss_pred HhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccc
Confidence 9999999999999999999999999999999999999999999999995 4567889999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH-HH-cCCCeEEEEccCchhhhccCE
Q 000830 510 FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALD-RV-MVGRTTVVVAHRLSTIRNADV 587 (1265)
Q Consensus 510 ~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~l~~~~~~d~ 587 (1265)
|||. .+|||||||||+||||++++|+|||||||||+||+++++.+.+.+. .+ .+++|+|+||||+++++.||+
T Consensus 465 ~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~ 539 (555)
T TIGR01194 465 FSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQ 539 (555)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence 9994 7899999999999999999999999999999999999999988764 34 368999999999999999999
Q ss_pred EEEEeCCEEEEe
Q 000830 588 IAVVQGRKIVKT 599 (1265)
Q Consensus 588 i~~l~~G~i~~~ 599 (1265)
|++|++|+++|.
T Consensus 540 i~~l~~G~i~~~ 551 (555)
T TIGR01194 540 IIKLAAGCIVKD 551 (555)
T ss_pred EEEEECCEEEEe
Confidence 999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-74 Score=706.11 Aligned_cols=462 Identities=23% Similarity=0.417 Sum_probs=357.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC--CcceEEECCeeCCCCChHH-Hh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKW-LR 457 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~r 457 (1265)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 3599999999999999999999999999999999999996 8999999999998766553 46
Q ss_pred hheeEEccCCccccc-cHHHHhccCCCC-----CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 458 QQIGLVNQEPALFAT-TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
++++||+|++.+|.. |++||+.++... ...++..+. +.+.+..+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999988875 999999987431 122222111 12223333 23333455667899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1265)
||||+.+|+|||||||||+||+.+...+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 233 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED- 233 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-
Confidence 999999999999999999999999999999998874 48999999999999876 999999999999988765443110
Q ss_pred chHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHHHH
Q 000830 610 NSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYS 689 (1265)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1265)
.....
T Consensus 234 -----~~~~~---------------------------------------------------------------------- 238 (506)
T PRK13549 234 -----DIITM---------------------------------------------------------------------- 238 (506)
T ss_pred -----HHHHH----------------------------------------------------------------------
Confidence 00000
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 690 MVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERL 769 (1265)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 769 (1265)
T Consensus 239 -------------------------------------------------------------------------------- 238 (506)
T PRK13549 239 -------------------------------------------------------------------------------- 238 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 770 TLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVAT 849 (1265)
Q Consensus 770 ~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~ 849 (1265)
++.. +.
T Consensus 239 ------------------~~~~---~~----------------------------------------------------- 244 (506)
T PRK13549 239 ------------------MVGR---EL----------------------------------------------------- 244 (506)
T ss_pred ------------------hhCc---Cc-----------------------------------------------------
Confidence 0000 00
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000830 850 YPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGI 929 (1265)
Q Consensus 850 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1265)
.
T Consensus 245 ----------------------------------------------------------------~--------------- 245 (506)
T PRK13549 245 ----------------------------------------------------------------T--------------- 245 (506)
T ss_pred ----------------------------------------------------------------c---------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCc
Q 000830 930 SQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGE 1009 (1265)
Q Consensus 930 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 1009 (1265)
+ . .+.. . .
T Consensus 246 --------------------------------------------------------------~---~--~~~~-~----~ 253 (506)
T PRK13549 246 --------------------------------------------------------------A---L--YPRE-P----H 253 (506)
T ss_pred --------------------------------------------------------------c---c--cccc-c----c
Confidence 0 0 0000 0 0
Q ss_pred ccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-CCCcEEEECCcccCCCC
Q 000830 1010 ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-PTAGKVMVDGIDIKRLN 1088 (1265)
Q Consensus 1010 ~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-p~~G~I~idG~di~~~~ 1088 (1265)
++....|+++||+++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++...+
T Consensus 254 --~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~ 331 (506)
T PRK13549 254 --TIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN 331 (506)
T ss_pred --CCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC
Confidence 000124899999999953223458999999999999999999999999999999999999 59999999999986554
Q ss_pred H-HHHhcccEEEecCC---CCCc-ccHHHHhccCCC-C------CCHHHHHHHHHHhchHHHHHhCCCCccc-cccCCCC
Q 000830 1089 L-KSLRKHIALVQQEP---ALFA-TSIYENILYGKD-G------ASEGEVIEAAKLANAHSFISALPEGYST-KVGERGV 1155 (1265)
Q Consensus 1089 l-~~lR~~i~~VpQdp---~LF~-gTIreNl~~g~~-~------~sd~ei~~al~~a~l~~~i~~lp~Gldt-~vge~G~ 1155 (1265)
. +.+|++++||||+| .+|. .|+.||+.++.. . .+.++. ...+.+.++.+ |++. .......
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~ 404 (506)
T PRK13549 332 PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIA 404 (506)
T ss_pred HHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccc
Confidence 3 44678899999997 3554 599999976421 0 111111 11233444444 3321 2334456
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEE
Q 000830 1156 QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKII 1233 (1265)
Q Consensus 1156 ~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Iv 1233 (1265)
.||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||++++|++|+++
T Consensus 405 ~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999999875 47899999999999876 9999999999999
Q ss_pred EecChhhhh
Q 000830 1234 EQGTHSSLV 1242 (1265)
Q Consensus 1234 e~Gt~~eLl 1242 (1265)
..|+++++.
T Consensus 485 ~~~~~~~~~ 493 (506)
T PRK13549 485 GDLINHNLT 493 (506)
T ss_pred EEeccccCC
Confidence 999998874
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-73 Score=703.30 Aligned_cols=470 Identities=27% Similarity=0.454 Sum_probs=356.9
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCCCChH
Q 000830 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLK 454 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~ 454 (1265)
.++++|++++|++. .+.++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999987 799999999999876654
Q ss_pred H---Hh-hheeEEccCCc--ccc-ccHHHHhccCC---CCCCHHHHHHHHHHhcHHHHHhcCccccc---ccccCCCCCC
Q 000830 455 W---LR-QQIGLVNQEPA--LFA-TTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFE---TQVGERGIQL 521 (1265)
Q Consensus 455 ~---~r-~~i~~v~Q~~~--lf~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~~g~~L 521 (1265)
. +| ++|+||+|++. +++ .|+++|+.++. ...+.++..+. +.+.++.+ |++ ........+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGE-----ILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHC--CCCChHHHHhhCCccc
Confidence 3 33 57999999985 454 49999986431 11122221111 11222222 221 1234566789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 000830 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1265)
Q Consensus 522 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~ 598 (1265)
|||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998874 37999999999999875 99999999999999
Q ss_pred eeCcchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccc
Q 000830 599 TGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPAT 678 (1265)
Q Consensus 599 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1265)
.|+++++...+...+.
T Consensus 238 ~g~~~~~~~~~~~~~~---------------------------------------------------------------- 253 (529)
T PRK15134 238 QNRAATLFSAPTHPYT---------------------------------------------------------------- 253 (529)
T ss_pred eCCHHHHhhCCCCHHH----------------------------------------------------------------
Confidence 8877655321000000
Q ss_pred hhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000830 679 AKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIE 758 (1265)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 758 (1265)
..
T Consensus 254 ------~~------------------------------------------------------------------------ 255 (529)
T PRK15134 254 ------QK------------------------------------------------------------------------ 255 (529)
T ss_pred ------HH------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 759 HLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFIL 838 (1265)
Q Consensus 759 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 838 (1265)
++ .. .+.
T Consensus 256 ------------------~~-----------~~--~~~------------------------------------------ 262 (529)
T PRK15134 256 ------------------LL-----------NS--EPS------------------------------------------ 262 (529)
T ss_pred ------------------HH-----------Hh--Ccc------------------------------------------
Confidence 00 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHH
Q 000830 839 NWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918 (1265)
Q Consensus 839 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~ 918 (1265)
T Consensus 263 -------------------------------------------------------------------------------- 262 (529)
T PRK15134 263 -------------------------------------------------------------------------------- 262 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000830 919 RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLD 998 (1265)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~ 998 (1265)
T Consensus 263 -------------------------------------------------------------------------------- 262 (529)
T PRK15134 263 -------------------------------------------------------------------------------- 262 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCcccCCCcccEEEEeEEEECCCC--------CCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccC
Q 000830 999 RKTQVIGDIGEELTNVEGTIELRGVHFSYPSR--------PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 999 ~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~--------~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1070 (1265)
..+. ... .+....|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|.|++
T Consensus 263 ~~~~-~~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 263 GDPV-PLP-----EPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred cccc-ccC-----CCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 0000 000 0001148999999999621 1246899999999999999999999999999999999998
Q ss_pred CCCCcEEEECCcccCCCCHHH---HhcccEEEecCC--CCCc-ccHHHHhccCCC----CCCH----HHHHHHHHHhchH
Q 000830 1071 DPTAGKVMVDGIDIKRLNLKS---LRKHIALVQQEP--ALFA-TSIYENILYGKD----GASE----GEVIEAAKLANAH 1136 (1265)
Q Consensus 1071 ~p~~G~I~idG~di~~~~l~~---lR~~i~~VpQdp--~LF~-gTIreNl~~g~~----~~sd----~ei~~al~~a~l~ 1136 (1265)
|++|+|.+||.++...+... +|++++||||+| .+|. .|++||+.++.. ..+. +.+.++++..++.
T Consensus 337 -~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 415 (529)
T PRK15134 337 -NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD 415 (529)
T ss_pred -CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCC
Confidence 58999999999998766543 478899999998 3665 599999976421 1111 2333444444432
Q ss_pred HHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecC
Q 000830 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHR 1214 (1265)
Q Consensus 1137 ~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHR 1214 (1265)
+ ........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+
T Consensus 416 ~----------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd 485 (529)
T PRK15134 416 P----------ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD 485 (529)
T ss_pred H----------HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 1 122334457999999999999999999999999999999999999999999998753 7899999999
Q ss_pred chhhhc-cCEEEEEeCCEEEEecChhhhhhcCCcHH
Q 000830 1215 LSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAY 1249 (1265)
Q Consensus 1215 l~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f 1249 (1265)
++.+.. ||+|++|++|++++.|+++++++.+...|
T Consensus 486 ~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 486 LHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEY 521 (529)
T ss_pred HHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChH
Confidence 999876 99999999999999999999986444333
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-73 Score=696.76 Aligned_cols=459 Identities=22% Similarity=0.388 Sum_probs=351.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH-Hhhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1265)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 35899999999999999999999999999999999999999999999999998777654 3457
Q ss_pred eeEEccCCccccc-cHHHHhccCCCCC---------CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHH
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDDA---------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1265)
++||+|++.++.. |++||+.++.... ..++..+ + +.+.+..+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV--R---AAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH--H---HHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988876 9999998764210 1111111 1 12223322 233334555678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 530 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999998875 48999999999999876 99999999999998887655421
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHH
Q 000830 608 NPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKL 687 (1265)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1265)
. .+....
T Consensus 235 ~------~~~~~~------------------------------------------------------------------- 241 (510)
T PRK09700 235 D------DIVRLM------------------------------------------------------------------- 241 (510)
T ss_pred H------HHHHHh-------------------------------------------------------------------
Confidence 0 000000
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 688 YSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGE 767 (1265)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 767 (1265)
T Consensus 242 -------------------------------------------------------------------------------- 241 (510)
T PRK09700 242 -------------------------------------------------------------------------------- 241 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 768 RLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVV 847 (1265)
Q Consensus 768 ~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l 847 (1265)
+.....+ ++
T Consensus 242 ---------------------~~~~~~~------~~-------------------------------------------- 250 (510)
T PRK09700 242 ---------------------VGRELQN------RF-------------------------------------------- 250 (510)
T ss_pred ---------------------cCCCccc------cc--------------------------------------------
Confidence 0000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000830 848 ATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFY 927 (1265)
Q Consensus 848 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1265)
T Consensus 251 -------------------------------------------------------------------------------- 250 (510)
T PRK09700 251 -------------------------------------------------------------------------------- 250 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 000830 928 GISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDI 1007 (1265)
Q Consensus 928 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 1007 (1265)
+. . .++.. ..
T Consensus 251 -----------------------------------------------------~~--------------~-~~~~~--~~ 260 (510)
T PRK09700 251 -----------------------------------------------------NA--------------M-KENVS--NL 260 (510)
T ss_pred -----------------------------------------------------cc--------------c-ccccc--cC
Confidence 00 0 00000 00
Q ss_pred CcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCC
Q 000830 1008 GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL 1087 (1265)
Q Consensus 1008 ~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 1087 (1265)
..+..|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...
T Consensus 261 -----~~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~ 330 (510)
T PRK09700 261 -----AHETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPR 330 (510)
T ss_pred -----CCCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCC
Confidence 0012599999998763 279999999999999999999999999999999999999999999999998765
Q ss_pred CH-HHHhcccEEEecCC---CCCcc-cHHHHhccCCCC-----------CCHHHHHHHHHHhchHHHHHhCCCCcc-ccc
Q 000830 1088 NL-KSLRKHIALVQQEP---ALFAT-SIYENILYGKDG-----------ASEGEVIEAAKLANAHSFISALPEGYS-TKV 1150 (1265)
Q Consensus 1088 ~l-~~lR~~i~~VpQdp---~LF~g-TIreNl~~g~~~-----------~sd~ei~~al~~a~l~~~i~~lp~Gld-t~v 1150 (1265)
+. ..+|++++||||++ .+|.. |++||+.++... ....+. ...+.+.++.+ |+. ...
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~ 403 (510)
T PRK09700 331 SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSV 403 (510)
T ss_pred CHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCc
Confidence 43 45678999999984 57754 999999865210 011110 01122333333 232 122
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEe
Q 000830 1151 GERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIE 1228 (1265)
Q Consensus 1151 ge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~ 1228 (1265)
......||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|+
T Consensus 404 ~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~ 483 (510)
T PRK09700 404 NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFC 483 (510)
T ss_pred cCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEE
Confidence 33345699999999999999999999999999999999999999999999864 47899999999999875 99999999
Q ss_pred CCEEEEecChhh
Q 000830 1229 SGKIIEQGTHSS 1240 (1265)
Q Consensus 1229 ~G~Ive~Gt~~e 1240 (1265)
+|++++.+++.+
T Consensus 484 ~G~i~~~~~~~~ 495 (510)
T PRK09700 484 EGRLTQILTNRD 495 (510)
T ss_pred CCEEEEEecCcc
Confidence 999999987644
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=690.50 Aligned_cols=454 Identities=23% Similarity=0.380 Sum_probs=351.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH-Hhhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1265)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 45999999999999999999999999999999999999999999999999987655444 4567
Q ss_pred eeEEccCCccccc-cHHHHhccCCCC------CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
++||+|++.++.. |++||+.++... ....+..+ .+.+.+..+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988876 999999986421 11121111 112223332 233333455678999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 231 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED-- 231 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH--
Confidence 99999999999999999999999999999998874 47899999999999875 999999999999987765443110
Q ss_pred hHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHHHHh
Q 000830 611 SAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSM 690 (1265)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1265)
.+.. .
T Consensus 232 ----~~~~-----~------------------------------------------------------------------ 236 (501)
T PRK10762 232 ----SLIE-----M------------------------------------------------------------------ 236 (501)
T ss_pred ----HHHH-----H------------------------------------------------------------------
Confidence 0000 0
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 691 VRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLT 770 (1265)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 770 (1265)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T PRK10762 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 771 LRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATY 850 (1265)
Q Consensus 771 ~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~ 850 (1265)
++.. ..
T Consensus 237 -----------------~~~~--~~------------------------------------------------------- 242 (501)
T PRK10762 237 -----------------MVGR--KL------------------------------------------------------- 242 (501)
T ss_pred -----------------hcCC--Cc-------------------------------------------------------
Confidence 0000 00
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000830 851 PLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGIS 930 (1265)
Q Consensus 851 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1265)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcc
Q 000830 931 QFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEE 1010 (1265)
Q Consensus 931 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~ 1010 (1265)
. ...+...
T Consensus 243 ------------------------------------------------------------~------~~~~~~~------ 250 (501)
T PRK10762 243 ------------------------------------------------------------E------DQYPRLD------ 250 (501)
T ss_pred ------------------------------------------------------------c------ccccccc------
Confidence 0 0000000
Q ss_pred cCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCH-
Q 000830 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL- 1089 (1265)
Q Consensus 1011 ~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l- 1089 (1265)
.++.+..|+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 251 ~~~~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~ 322 (501)
T PRK10762 251 KAPGEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQ 322 (501)
T ss_pred cCCCCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 000011488999974 26999999999999999999999999999999999999999999999999977664
Q ss_pred HHHhcccEEEecCC---CCC-cccHHHHhccCCC-C-------CCHHHHHHHHHHhchHHHHHhCCCCcc-ccccCCCCC
Q 000830 1090 KSLRKHIALVQQEP---ALF-ATSIYENILYGKD-G-------ASEGEVIEAAKLANAHSFISALPEGYS-TKVGERGVQ 1156 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp---~LF-~gTIreNl~~g~~-~-------~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~ 1156 (1265)
+.+|++++||||+| .+| .-|++||+.++.. . .+.++.. ..+.++++.+ |++ .........
T Consensus 323 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~ 395 (501)
T PRK10762 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLF--NIKTPSMEQAIGL 395 (501)
T ss_pred HHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhc--CCCCCCccCchhh
Confidence 34678899999997 355 4699999976421 0 1111111 1123344443 332 223445567
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 000830 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIE 1234 (1265)
Q Consensus 1157 LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive 1234 (1265)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 396 LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 47899999999999876 99999999999999
Q ss_pred ecChhhhh
Q 000830 1235 QGTHSSLV 1242 (1265)
Q Consensus 1235 ~Gt~~eLl 1242 (1265)
.|+++++.
T Consensus 476 ~~~~~~~~ 483 (501)
T PRK10762 476 EFTREQAT 483 (501)
T ss_pred EeccccCC
Confidence 99988764
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-72 Score=608.59 Aligned_cols=473 Identities=32% Similarity=0.492 Sum_probs=369.2
Q ss_pred cEEEEeEEEECCC-CCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCCCChH
Q 000830 381 HIEFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLK 454 (1265)
Q Consensus 381 ~i~~~~v~f~y~~-~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~ 454 (1265)
-++++|++.+|.. .....++++|||++++||++||||+||||||--.+.++|+++- .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 4788998888852 2345789999999999999999999999999999999999964 479999999999988888
Q ss_pred HHhh----heeEEccCCc--cccc-cHHHH----hccCCCC---CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCC
Q 000830 455 WLRQ----QIGLVNQEPA--LFAT-TIREN----ILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1265)
Q Consensus 455 ~~r~----~i~~v~Q~~~--lf~~-ti~~n----i~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1265)
.+|+ +|++++|||. |-+- ||..- |.+-+.- +..+++.+.++.. .+|+ -...+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~V-------gI~~-p~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELV-------GIPE-PEKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc-------CCCc-hhhhhhhCCcc
Confidence 8775 7999999995 3322 55444 4332211 1112222222222 2333 23345677889
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 000830 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1265)
Q Consensus 521 LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~ 597 (1265)
|||||||||.||.||+.+|++||-||||.|||...+.+|.+.|+++.+ |..+++|||+|..++. ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999998853 8999999999999987 9999999999999
Q ss_pred EeeCcchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCcc
Q 000830 598 KTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPA 677 (1265)
Q Consensus 598 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1265)
|.|+.+++.+.+...|.+..-..+ .. ..+
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~ae------P~------g~~--------------------------------------- 266 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAE------PS------GDP--------------------------------------- 266 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcC------CC------CCC---------------------------------------
Confidence 999999888877666654321100 00 000
Q ss_pred chhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000830 678 TAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAI 757 (1265)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 757 (1265)
T Consensus 267 -------------------------------------------------------------------------------- 266 (534)
T COG4172 267 -------------------------------------------------------------------------------- 266 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 758 EHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFI 837 (1265)
Q Consensus 758 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 837 (1265)
T Consensus 267 -------------------------------------------------------------------------------- 266 (534)
T COG4172 267 -------------------------------------------------------------------------------- 266 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHH
Q 000830 838 LNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSF 917 (1265)
Q Consensus 838 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 917 (1265)
T Consensus 267 -------------------------------------------------------------------------------- 266 (534)
T COG4172 267 -------------------------------------------------------------------------------- 266 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000830 918 IRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVL 997 (1265)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~ 997 (1265)
T Consensus 267 -------------------------------------------------------------------------------- 266 (534)
T COG4172 267 -------------------------------------------------------------------------------- 266 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCcccCCCcccEEEEeEEEECCCC--------CCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 000830 998 DRKTQVIGDIGEELTNVEGTIELRGVHFSYPSR--------PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 998 ~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~--------~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl 1069 (1265)
.+.+...+..++.+||...||-+ ....+.+++||+.++||++||||+|||||||+-++|+|+
T Consensus 267 ----------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL 336 (534)
T COG4172 267 ----------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336 (534)
T ss_pred ----------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh
Confidence 00000001123334444443311 112478999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCcccCCCCHHH---HhcccEEEecCCC--CC-cccHHHHhccC----CCCCC----HHHHHHHHHHhch
Q 000830 1070 YDPTAGKVMVDGIDIKRLNLKS---LRKHIALVQQEPA--LF-ATSIYENILYG----KDGAS----EGEVIEAAKLANA 1135 (1265)
Q Consensus 1070 ~~p~~G~I~idG~di~~~~l~~---lR~~i~~VpQdp~--LF-~gTIreNl~~g----~~~~s----d~ei~~al~~a~l 1135 (1265)
.+++ |+|.++|.||...+.+. +|+++-+|+|||+ |= .-||.+-|.=| .+..+ ++.+.+|++.+|+
T Consensus 337 ~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGL 415 (534)
T COG4172 337 IPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGL 415 (534)
T ss_pred cCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCC
Confidence 9876 99999999999888665 7899999999997 22 23666555433 23333 4567788888877
Q ss_pred HHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEec
Q 000830 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAH 1213 (1265)
Q Consensus 1136 ~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaH 1213 (1265)
+.-... .-...+|||||||||||||++-+|++++|||||||||-.-.+.|.+.++++.+ +-+-++|+|
T Consensus 416 Dp~~r~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISH 485 (534)
T COG4172 416 DPATRN----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485 (534)
T ss_pred ChhHhh----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 654332 23467999999999999999999999999999999999999999999998764 569999999
Q ss_pred Cchhhhc-cCEEEEEeCCEEEEecChhhhhhcCCcHHHHHH
Q 000830 1214 RLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1214 Rl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~ 1253 (1265)
+|..++. ||+|+||.+|+|||+|+-+++++++...|.+-.
T Consensus 486 DL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~L 526 (534)
T COG4172 486 DLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRAL 526 (534)
T ss_pred cHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHHH
Confidence 9999997 999999999999999999999999988887654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-70 Score=731.31 Aligned_cols=500 Identities=18% Similarity=0.248 Sum_probs=405.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 113 AILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLG 192 (1265)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~ 192 (1265)
+..++.+++.+++.+.+.+...++|.++++++++.|++||++ .++|++++|+++|++.+++.+...+..++..++.+++
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888899999999999999999999999998 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHH
Q 000830 193 GFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALS 272 (1265)
Q Consensus 193 ~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~ 272 (1265)
.++++++++|.++++++.++.+++++..++.+..+...+......+.+.+.+.|+++|+.+||+|++|+.+.+++.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999997765444333333334445555555566666677788899999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000830 273 NTYKYGRKAGLAKGLGLGSMHCVLFLSWS--LLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKA 350 (1265)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 350 (1265)
...+..........+......++..+..+ ++++++. .....|.+...+.+.+....++..+...+..+..++.
T Consensus 1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~ 1170 (1490)
T TIGR01271 1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMR 1170 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443332222222221112221111111 1112222 1223333333333334444566677777888899999
Q ss_pred HHHHHHHHhcccccccccccc----------------CCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEE
Q 000830 351 AAYPIFEMIERDTMSKASSKT----------------GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVA 414 (1265)
Q Consensus 351 a~~ri~~~l~~~~~~~~~~~~----------------~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ 414 (1265)
|.+|+.++++.+++....... ..+.++..|.|+|+||+|+|++. .+++|+|+||+|+|||++|
T Consensus 1171 s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gekva 1249 (1490)
T TIGR01271 1171 SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVG 1249 (1490)
T ss_pred HHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEE
Confidence 999999999765543211000 00112445789999999999753 3579999999999999999
Q ss_pred EEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHH
Q 000830 415 LVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494 (1265)
Q Consensus 415 ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~ 494 (1265)
|||+||||||||+++|+|+++ ++|+|.|||+|+++++.+++|++|+||||+|.||+|||||||.... ..+++++++|+
T Consensus 1250 IvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL 1327 (1490)
T TIGR01271 1250 LLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVA 1327 (1490)
T ss_pred EECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHH
Confidence 999999999999999999997 7999999999999999999999999999999999999999997643 56899999999
Q ss_pred HHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEE
Q 000830 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVV 574 (1265)
Q Consensus 495 ~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~ 574 (1265)
+.+++.+++..+|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+
T Consensus 1328 ~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~ 1407 (1490)
T TIGR01271 1328 EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVIL 1407 (1490)
T ss_pred HHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHHHHH
Q 000830 575 VAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEA 622 (1265)
Q Consensus 575 itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 622 (1265)
||||++++.+||+|+||++|+|+|.|+|++|+++ ++.|+++++.+..
T Consensus 1408 IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1408 SEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred EecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 9999999999999999999999999999999975 8899999876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-72 Score=694.18 Aligned_cols=457 Identities=25% Similarity=0.466 Sum_probs=346.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCcceEEEC---------------
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLD--------------- 444 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~--------------- 444 (1265)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 35999999999999999999999999999999999996 7999999997
Q ss_pred --------CeeCC-------CCC---hHHHhhheeEEccC-Cccccc-cHHHHhccCCCC--CCHHHHHHHHHHhcHHHH
Q 000830 445 --------GNNIK-------GLD---LKWLRQQIGLVNQE-PALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSF 502 (1265)
Q Consensus 445 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~ 502 (1265)
|.++. ..+ ...+|+.++||+|+ +.+|+. |++||+.++... ...++..+ .+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHH
Confidence 32221 111 13457789999998 577765 999999875321 12222111 11122
Q ss_pred HhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCch
Q 000830 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLS 580 (1265)
Q Consensus 503 i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~ 580 (1265)
+..+ |++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .|+|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 3322 33334456678899999999999999999999999999999999999999999998874 3799999999999
Q ss_pred hhhc-cCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcc
Q 000830 581 TIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFR 659 (1265)
Q Consensus 581 ~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1265)
.+.. ||+|++|++|++++.|+++++... +.
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----~~--------------------------------------------- 261 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAV----FM--------------------------------------------- 261 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHH----HH---------------------------------------------
Confidence 9875 999999999999876654332100 00
Q ss_pred cchhhhcccCCCCCCCccchhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHH
Q 000830 660 SEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKK 739 (1265)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1265)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHH
Q 000830 740 ITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRST 819 (1265)
Q Consensus 740 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~ 819 (1265)
. .
T Consensus 262 --------------------------------------------------~---~------------------------- 263 (520)
T TIGR03269 262 --------------------------------------------------E---G------------------------- 263 (520)
T ss_pred --------------------------------------------------h---h-------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHH
Q 000830 820 ILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSED 899 (1265)
Q Consensus 820 ~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~ 899 (1265)
+ .
T Consensus 264 --------------------~------------------------~---------------------------------- 265 (520)
T TIGR03269 264 --------------------V------------------------S---------------------------------- 265 (520)
T ss_pred --------------------c------------------------h----------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 900 KVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLAL 979 (1265)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1265)
.
T Consensus 266 --------------~----------------------------------------------------------------- 266 (520)
T TIGR03269 266 --------------E----------------------------------------------------------------- 266 (520)
T ss_pred --------------h-----------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCcccCCCcccEEEEeEEEECCC--CCCcccccceeEEEeCCcEEEEEcCCCC
Q 000830 980 VPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPS--RPEVVIFKDFNLKVRAGKSMALVGQSGS 1057 (1265)
Q Consensus 980 ~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~--~~~~~vL~~isl~I~~Ge~vaIVG~SGS 1057 (1265)
. ...... . .....|+++||+++|++ +...++|+|+||+|++||++||+|||||
T Consensus 267 ---~--------------~~~~~~--~------~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGs 321 (520)
T TIGR03269 267 ---V--------------EKECEV--E------VGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGA 321 (520)
T ss_pred ---h--------------cccccc--C------CCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCC
Confidence 0 000000 0 00124999999999963 1124689999999999999999999999
Q ss_pred ChHHHHHHHhccCCCCCcEEEEC-Ccc---cCCCC---HHHHhcccEEEecCCCCCcc-cHHHHhccCCC-CCCH----H
Q 000830 1058 GKSTVLSLILRFYDPTAGKVMVD-GID---IKRLN---LKSLRKHIALVQQEPALFAT-SIYENILYGKD-GASE----G 1124 (1265)
Q Consensus 1058 GKSTL~~lL~rl~~p~~G~I~id-G~d---i~~~~---l~~lR~~i~~VpQdp~LF~g-TIreNl~~g~~-~~sd----~ 1124 (1265)
|||||+++|.|+++|++|+|.++ |.+ +...+ ...+|++++||||++.+|.. |++||+.++.. .... +
T Consensus 322 GKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 401 (520)
T TIGR03269 322 GKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARM 401 (520)
T ss_pred CHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999996 643 33332 23567789999999988874 99999975311 1111 2
Q ss_pred HHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC
Q 000830 1125 EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR 1204 (1265)
Q Consensus 1125 ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~ 1204 (1265)
++.++++..++.+. ..+.........||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+
T Consensus 402 ~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~ 475 (520)
T TIGR03269 402 KAVITLKMVGFDEE------KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKARE 475 (520)
T ss_pred HHHHHHHhCCCCCc------cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 23344444443210 000012334457999999999999999999999999999999999999999999998753
Q ss_pred --CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1205 --KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1205 --~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 476 ~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 476 EMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 7899999999999976 99999999999999999998865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-70 Score=693.84 Aligned_cols=510 Identities=23% Similarity=0.317 Sum_probs=427.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHH
Q 000830 102 KYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVG 181 (1265)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~ 181 (1265)
.+...+.+++++..++..++.+.+...+.+.+.++..++++++++-|++|||. +++|.|+||+++|++.+++.+...+.
T Consensus 859 ~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~ 937 (1381)
T KOG0054|consen 859 FYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLE 937 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHH
Confidence 45566777777888888888999999999999999999999999999999998 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH
Q 000830 182 NFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGED 261 (1265)
Q Consensus 182 ~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~ 261 (1265)
.++..++.+++.++++.+..|...++++.+..+.+.+..++.+-.+...+-.....+-..+++.|+++|+.|||+|+.|+
T Consensus 938 ~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~ 1017 (1381)
T KOG0054|consen 938 FFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEE 1017 (1381)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccH
Confidence 99999999999999999999977766665555555566666666666666566666777889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhh
Q 000830 262 KAVKVYKEALSNTYKYG---RKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQA 338 (1265)
Q Consensus 262 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~ 338 (1265)
++.+++.+..+...+.. ....+|.++..-++..+..+..++ +.. +...+..++|.+--.+.+.+.....+...
T Consensus 1018 rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al---~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~ 1093 (1381)
T KOG0054|consen 1018 RFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAAL---FAV-LLPSGLISPGLVGLSLSYALQLTGLLQWL 1093 (1381)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HccCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 99999988776655443 333444444433332222111111 111 11122144565544455666666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccc--CCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEE
Q 000830 339 APDITAFIRAKAAAYPIFEMIERDTMSKASSKT--GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416 (1265)
Q Consensus 339 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~iv 416 (1265)
......+...++|.+|+.++.+.++|.+...+. .++.++.+|.|+|+|++.+|.+. ..+||+||||+|+|||++|||
T Consensus 1094 vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIV 1172 (1381)
T KOG0054|consen 1094 VRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIV 1172 (1381)
T ss_pred HHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEe
Confidence 888888899999999999999866551111111 23446778999999999999754 357999999999999999999
Q ss_pred cCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHH
Q 000830 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKL 496 (1265)
Q Consensus 417 G~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~ 496 (1265)
|++|||||||+++|.|+.+|.+|+|.|||.|+.++.+++||++++.+||||.||+||+|.|+-= ..+.+|+++++|++.
T Consensus 1173 GRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP-f~e~sD~~IW~ALe~ 1251 (1381)
T KOG0054|consen 1173 GRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP-FDEYSDDEIWEALER 1251 (1381)
T ss_pred CCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc-ccccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999862 235789999999999
Q ss_pred hcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEc
Q 000830 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVA 576 (1265)
Q Consensus 497 ~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~it 576 (1265)
+++.+++.++|+|+|+.|.|+|.|+|-||||-+||||||+++++||+||||||++|++|...||+.|++..+++|||.|+
T Consensus 1252 ~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIA 1331 (1381)
T KOG0054|consen 1252 CQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIA 1331 (1381)
T ss_pred hChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHH
Q 000830 577 HRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618 (1265)
Q Consensus 577 H~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 618 (1265)
||++++.++|||+|||+|+|+|.|+|.+|++++++.|+++..
T Consensus 1332 HRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1332 HRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred eccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 999999999999999999999999999999987888875543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-72 Score=687.29 Aligned_cols=456 Identities=25% Similarity=0.390 Sum_probs=347.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh-HHHhhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1265)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 359999999999999999999999999999999999999999999999999875543 456788
Q ss_pred eeEEccCCccccc-cHHHHhccCCCC-----CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
|+||+|++.+|+. |++||+.++... ....+..+ .+.+.+..+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999998876 999999986421 11222111 122233333 2332334566789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCch
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1265)
||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.++..+....
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~--- 230 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDR--- 230 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCCH---
Confidence 9999999999999999999999999999998875 48999999999999866 999999999999864421100000
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHHHHhh
Q 000830 612 AYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMV 691 (1265)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1265)
..+.
T Consensus 231 --~~~~-------------------------------------------------------------------------- 234 (501)
T PRK11288 231 --DQLV-------------------------------------------------------------------------- 234 (501)
T ss_pred --HHHH--------------------------------------------------------------------------
Confidence 0000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 692 RPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTL 771 (1265)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 771 (1265)
T Consensus 235 -------------------------------------------------------------------------------- 234 (501)
T PRK11288 235 -------------------------------------------------------------------------------- 234 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 772 RVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYP 851 (1265)
Q Consensus 772 ~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~p 851 (1265)
..+ ... +.
T Consensus 235 -------~~~-------~~~---~~------------------------------------------------------- 242 (501)
T PRK11288 235 -------QAM-------VGR---EI------------------------------------------------------- 242 (501)
T ss_pred -------HHh-------cCC---Cc-------------------------------------------------------
Confidence 000 000 00
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000830 852 LIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQ 931 (1265)
Q Consensus 852 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1265)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccc
Q 000830 932 FFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEEL 1011 (1265)
Q Consensus 932 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 1011 (1265)
.+ .....+.
T Consensus 243 -----------------------------------------------------------~~---~~~~~~~--------- 251 (501)
T PRK11288 243 -----------------------------------------------------------GD---IYGYRPR--------- 251 (501)
T ss_pred -----------------------------------------------------------cc---ccccccc---------
Confidence 00 0000000
Q ss_pred CCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCC-HH
Q 000830 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN-LK 1090 (1265)
Q Consensus 1012 ~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-l~ 1090 (1265)
++.+..++++|+++. .+++|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+ .+
T Consensus 252 ~~~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 252 PLGEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred CCCCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHH
Confidence 000124889999732 3799999999999999999999999999999999999999999999999987543 34
Q ss_pred HHhcccEEEecCCC---CC-cccHHHHhccCCCCC--------CHHHHHHHHHHhchHHHHHhCCCCcc-ccccCCCCCC
Q 000830 1091 SLRKHIALVQQEPA---LF-ATSIYENILYGKDGA--------SEGEVIEAAKLANAHSFISALPEGYS-TKVGERGVQL 1157 (1265)
Q Consensus 1091 ~lR~~i~~VpQdp~---LF-~gTIreNl~~g~~~~--------sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~L 1157 (1265)
.+|++++|+||+|. +| ..|+.||+.++.... ...+-. ..+.+++..+ |++ ........+|
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~L 397 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFIRSL--NIKTPSREQLIMNL 397 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHHHhc--CcccCCccCccccC
Confidence 56789999999973 55 479999997642110 111111 1122333333 231 1223334579
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 000830 1158 SGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQ 1235 (1265)
Q Consensus 1158 SgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~ 1235 (1265)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999988754 7899999999999976 999999999999999
Q ss_pred cChhhhh
Q 000830 1236 GTHSSLV 1242 (1265)
Q Consensus 1236 Gt~~eLl 1242 (1265)
|+++|..
T Consensus 478 ~~~~~~~ 484 (501)
T PRK11288 478 LAREQAT 484 (501)
T ss_pred EccccCC
Confidence 9998765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-72 Score=684.72 Aligned_cols=460 Identities=23% Similarity=0.377 Sum_probs=348.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC--CcceEEECCeeCCCCChHH-Hhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP--LSGEILLDGNNIKGLDLKW-LRQ 458 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 458 (1265)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999963 3599999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred heeEEccCCccccc-cHHHHhccCCCC------CCHHHHHHHHHHhcHHHHHhcCcccccccc-cCCCCCCChHHHHHHH
Q 000830 459 QIGLVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQV-GERGIQLSGGQKQRIA 530 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGqkqria 530 (1265)
+|+||+|++.++.. |++||+.++... ...++..+ .+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 79999999988876 999999886421 11122111 122233333 222111 2335689999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 531 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 9999999999999999999999999999999998874 48899999999999876 999999999999876543221000
Q ss_pred CchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHHH
Q 000830 609 PNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLY 688 (1265)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1265)
....
T Consensus 232 ------~~~~---------------------------------------------------------------------- 235 (500)
T TIGR02633 232 ------DIIT---------------------------------------------------------------------- 235 (500)
T ss_pred ------HHHH----------------------------------------------------------------------
Confidence 0000
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 689 SMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGER 768 (1265)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 768 (1265)
.
T Consensus 236 --------------------------------~----------------------------------------------- 236 (500)
T TIGR02633 236 --------------------------------M----------------------------------------------- 236 (500)
T ss_pred --------------------------------H-----------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 769 LTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVA 848 (1265)
Q Consensus 769 ~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~ 848 (1265)
++.. +.
T Consensus 237 -------------------~~~~---~~---------------------------------------------------- 242 (500)
T TIGR02633 237 -------------------MVGR---EI---------------------------------------------------- 242 (500)
T ss_pred -------------------HhCc---cc----------------------------------------------------
Confidence 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000830 849 TYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYG 928 (1265)
Q Consensus 849 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1265)
T Consensus 243 -------------------------------------------------------------------------------- 242 (500)
T TIGR02633 243 -------------------------------------------------------------------------------- 242 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC
Q 000830 929 ISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIG 1008 (1265)
Q Consensus 929 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 1008 (1265)
. . . .+.. . .
T Consensus 243 ----------------------------------------------------~----------~---~--~~~~-~--~- 251 (500)
T TIGR02633 243 ----------------------------------------------------T----------S---L--YPHE-P--H- 251 (500)
T ss_pred ----------------------------------------------------c----------c---c--cccc-c--c-
Confidence 0 0 0 0000 0 0
Q ss_pred cccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCcEEEECCcccCCC
Q 000830 1009 EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-TAGKVMVDGIDIKRL 1087 (1265)
Q Consensus 1009 ~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~idG~di~~~ 1087 (1265)
. ..+..|+++|++++|+..++..+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 252 ~---~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 252 E---IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR 328 (500)
T ss_pred C---CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC
Confidence 0 001148999999999532223589999999999999999999999999999999999995 899999999998654
Q ss_pred C-HHHHhcccEEEecCC---CCCc-ccHHHHhccCCCC-------CCHHHHHHHHHHhchHHHHHhCCCCccc-cccCCC
Q 000830 1088 N-LKSLRKHIALVQQEP---ALFA-TSIYENILYGKDG-------ASEGEVIEAAKLANAHSFISALPEGYST-KVGERG 1154 (1265)
Q Consensus 1088 ~-l~~lR~~i~~VpQdp---~LF~-gTIreNl~~g~~~-------~sd~ei~~al~~a~l~~~i~~lp~Gldt-~vge~G 1154 (1265)
+ ...+|++++||||++ .+|. .|+++|+.++... ...++. ...+.++++.+ |+.. ......
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~ 401 (500)
T TIGR02633 329 NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL--KVKTASPFLPI 401 (500)
T ss_pred CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc--CccCCCccCcc
Confidence 3 356788999999996 3665 5999999874210 111111 11122333333 2221 123334
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEE
Q 000830 1155 VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKI 1232 (1265)
Q Consensus 1155 ~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~I 1232 (1265)
..||||||||++|||||+++|++|||||||++||+.+.+.+++.|++.. ++.|+|+|||+++.+.. ||+|++|++|++
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 481 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 5699999999999999999999999999999999999999999998875 47899999999999976 999999999999
Q ss_pred EEecChhhh
Q 000830 1233 IEQGTHSSL 1241 (1265)
Q Consensus 1233 ve~Gt~~eL 1241 (1265)
+..++.+++
T Consensus 482 ~~~~~~~~~ 490 (500)
T TIGR02633 482 KGDFVNHAL 490 (500)
T ss_pred EEEEccccC
Confidence 988866544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-69 Score=708.37 Aligned_cols=220 Identities=25% Similarity=0.430 Sum_probs=186.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
..|+++|+++.|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3569999999999999999999999999999999999999999999999999864 45677889
Q ss_pred eeEEccCCccccc-cHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
+|||||++.+|+. |++|||.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999976 99999987521 112222211 112223332 3444456677889999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
.+|+|+|||||||+||+.+++.+.+.|+++.+|+|+|++||+++.+.. ||||++|++|++++.|+.++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999998789999999999999976 999999999999999999888643
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=682.48 Aligned_cols=465 Identities=23% Similarity=0.388 Sum_probs=354.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHh-hh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR-QQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 459 (1265)
.|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999877766554 46
Q ss_pred eeEEccCCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
++||+|++.++.. |++||+.++.... .+..+. +.+.+..+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQK-----MKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHHH-----HHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999998876 9999999875321 111111 11222222 233334455678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCchHHHHH
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1265)
|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++... .....+
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~--~~~~~~ 236 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD--DIIQAI 236 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH--HHHHHH
Confidence 99999999999999999999999998875 48999999999999865 999999999999999987765421 000000
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHHHHhhchhhH
Q 000830 617 VQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWT 696 (1265)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1265)
. . .. ..
T Consensus 237 ~------~----~~----~~------------------------------------------------------------ 242 (510)
T PRK15439 237 T------P----AA----RE------------------------------------------------------------ 242 (510)
T ss_pred h------C----cc----cc------------------------------------------------------------
Confidence 0 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 697 YGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREK 776 (1265)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~ 776 (1265)
T Consensus 243 -------------------------------------------------------------------------------- 242 (510)
T PRK15439 243 -------------------------------------------------------------------------------- 242 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 777 MFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISG 856 (1265)
Q Consensus 777 l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~ 856 (1265)
.. ..+. +
T Consensus 243 -------------~~-~~~~---------~-------------------------------------------------- 249 (510)
T PRK15439 243 -------------KS-LSAS---------Q-------------------------------------------------- 249 (510)
T ss_pred -------------cc-cccc---------c--------------------------------------------------
Confidence 00 0000 0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 857 HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFS 936 (1265)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1265)
.
T Consensus 250 ---------------------------------------------------------~---------------------- 250 (510)
T PRK15439 250 ---------------------------------------------------------K---------------------- 250 (510)
T ss_pred ---------------------------------------------------------c----------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccCCCcc
Q 000830 937 SYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEG 1016 (1265)
Q Consensus 937 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~g 1016 (1265)
. . ...+.... . .++.+.
T Consensus 251 --------------------------------------------------------~-~-~~~~~~~~-~----~~~~~~ 267 (510)
T PRK15439 251 --------------------------------------------------------L-W-LELPGNRR-Q----QAAGAP 267 (510)
T ss_pred --------------------------------------------------------c-c-cccccccc-c----cCCCCc
Confidence 0 0 00000000 0 000112
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH-Hhcc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS-LRKH 1095 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~ 1095 (1265)
.|+++|++. .+|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.++...+... +|++
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 488999983 1599999999999999999999999999999999999999999999999998776554 4678
Q ss_pred cEEEecCC---CCCc-ccHHHHhccCC----CC-CCHHHHHHHHHHhchHHHHHhCCCCcc-ccccCCCCCCChhHHHHH
Q 000830 1096 IALVQQEP---ALFA-TSIYENILYGK----DG-ASEGEVIEAAKLANAHSFISALPEGYS-TKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1096 i~~VpQdp---~LF~-gTIreNl~~g~----~~-~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~LSgGQkQrl 1165 (1265)
++||||++ .+|. .|+.+|+.... +. ....+.. ..+.++++.+ |++ .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999996 3665 49999985320 10 0111111 1123334443 332 233444457999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
+|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999999999999999999999875 47899999999999976 99999999999999999988764
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-69 Score=669.38 Aligned_cols=531 Identities=16% Similarity=0.162 Sum_probs=427.3
Q ss_pred HHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 684 AIKLYSMVR-PDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1265)
Q Consensus 684 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 762 (1265)
.+.++.+.+ ++|+.+..+++++++.+.........+...+... ..... .....++++.++..++.++..++.
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 77 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEE-----NFLGQ--GSLFSFGGLCLLALLFRIGADIFP 77 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----Ccccc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777 8888877777777666655444444443333211 00000 111223344555667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1265)
Q Consensus 763 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 842 (1265)
...+.+...++|.++|+++++.|+.||++ +++|++++|+++|++.++..+.. +..++..+..++++++++++++|.+
T Consensus 78 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L 154 (555)
T TIGR01194 78 AYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPM 154 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999996 78999999999999999998864 6777777888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHH--HHHHHHHHHHHhHHHHHHHHH
Q 000830 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSED--KVLELYSRELVEPSKRSFIRG 920 (1265)
Q Consensus 843 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~--~~~~~~~~~~~~~~~~~~~~~ 920 (1265)
++++++.+|+.++...+..+..++...+.++...+.++.+.|.+.|++++|+|+.++ ...+++.+..++..+...+..
T Consensus 155 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T TIGR01194 155 FAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEI 234 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999988888877766666555566666677777888899999999999999999954 556777777777766665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000830 921 QIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRK 1000 (1265)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~ 1000 (1265)
........+..++.....++.++++... +.++.+.+++...+......++..+......+..+..+.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~ 311 (555)
T TIGR01194 235 LIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERF 311 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444444444444444444445555443 5788898888888888888999999999999999999999999997532
Q ss_pred cc--ccC--CC-Cc----ccCCCcccEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 000830 1001 TQ--VIG--DI-GE----ELTNVEGTIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1001 ~~--~~~--~~-~~----~~~~~~g~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl 1069 (1265)
.+ ... .. .. +.+...+.|+|+||+|+|++.+ +.++|+|+||+|++||++|||||||||||||+++|.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 312 NEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred ccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 11 110 00 00 1112246899999999997532 23689999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccc
Q 000830 1070 YDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTK 1149 (1265)
Q Consensus 1070 ~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~ 1149 (1265)
|+|++|+|.+||+|+++++.+++|+++++|||||++|++|+++|+ .++.++++++++++.+++++++.++|+||||.
T Consensus 392 ~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 468 (555)
T TIGR01194 392 YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT 468 (555)
T ss_pred CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCc
Confidence 999999999999999999999999999999999999999999995 45678999999999999999999999999995
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHH-H-cCCceEEEEecCchhhhccCEEEEE
Q 000830 1150 VGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQR-L-MRKRTTIIVAHRLSTIKNADQISVI 1227 (1265)
Q Consensus 1150 vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~-~-~~~~TvI~IaHRl~ti~~~DrI~vl 1227 (1265)
.+|||||||||+||||++++|+|||||||||+||++||+.+++.+.+ . .+++|+|+||||++++..||+|+||
T Consensus 469 -----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l 543 (555)
T TIGR01194 469 -----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKL 543 (555)
T ss_pred -----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEE
Confidence 68999999999999999999999999999999999999999987743 3 4689999999999999999999999
Q ss_pred eCCEEEEe
Q 000830 1228 ESGKIIEQ 1235 (1265)
Q Consensus 1228 ~~G~Ive~ 1235 (1265)
++|+++|.
T Consensus 544 ~~G~i~~~ 551 (555)
T TIGR01194 544 AAGCIVKD 551 (555)
T ss_pred ECCEEEEe
Confidence 99999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-70 Score=607.86 Aligned_cols=499 Identities=24% Similarity=0.337 Sum_probs=450.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHH
Q 000830 737 VKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVD 816 (1265)
Q Consensus 737 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~ 816 (1265)
.....++.+++.++..++.+++.+++.+.+.++..+++..+|.+.+++|..- +..|+=. .--+|.++++.++..
T Consensus 62 Lv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~-----~~~g~~~-Q~LrDL~qvR~Fltg 135 (580)
T COG4618 62 LVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLR-----RGSGDGL-QPLRDLDQVRQFLTG 135 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhh-----cCCCccc-cchhhHHHHHHHHcC
Confidence 3444555566667778889999999999999999999999999998776542 2223211 123699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhc
Q 000830 817 RSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFC 896 (1265)
Q Consensus 817 ~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~ 896 (1265)
.-...+....+..+.+.+.|.++++++++.++...+++...++..+..++...+..+...+.+.+..-+.+|.++|++.|
T Consensus 136 ~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMG 215 (580)
T COG4618 136 TGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMG 215 (580)
T ss_pred CCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhc
Confidence 88888888899999999999999999999999888888888888888888777777788888899999999999999999
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Q 000830 897 SEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGET 976 (1265)
Q Consensus 897 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1265)
+.....++|.+....+.....+..-..+.+.+++..+-.+....++.+|.+++..+++|.|.+++....+.-...++..+
T Consensus 216 M~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~a 295 (580)
T COG4618 216 MLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLA 295 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHH
Confidence 99999999999888888888888888888899999999999999999999999999999999999888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 000830 977 LALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSG 1056 (1265)
Q Consensus 977 ~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SG 1056 (1265)
...+..+..+..+-+|+.+++...|.... .-+.|..+|.+.++++++.-|+. ++|+|+|+||+++|||-+||+||||
T Consensus 296 I~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~--~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSg 372 (580)
T COG4618 296 IANWKQFVAARQSYKRLNELLAELPAAAE--RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSG 372 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccC--CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCC
Confidence 99999999999999999999987665432 23455668999999999977654 4689999999999999999999999
Q ss_pred CChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchH
Q 000830 1057 SGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAH 1136 (1265)
Q Consensus 1057 SGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~ 1136 (1265)
||||||.++|.|.+.|++|.|++||.|+++.+.+.+-++|||.|||..||+|||+|||.-..++.+++.|.+|++.++.|
T Consensus 373 SGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvH 452 (580)
T COG4618 373 SGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVH 452 (580)
T ss_pred ccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChH
Confidence 99999999999999999999999999999999999999999999999999999999998766789999999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCc
Q 000830 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRL 1215 (1265)
Q Consensus 1137 ~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl 1215 (1265)
|.|.+||+||||.|||+|..|||||||||+|||||+.+|++++||||.|+||.+-|+.+.++|.+.. +|+|+|+||||+
T Consensus 453 elIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP 532 (580)
T COG4618 453 ELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP 532 (580)
T ss_pred HHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876 689999999999
Q ss_pred hhhhccCEEEEEeCCEEEEecChhhhhhc
Q 000830 1216 STIKNADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1216 ~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
+.+..+|+|+||++|++..+|+.+|.+++
T Consensus 533 s~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 533 SALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999999874
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-71 Score=675.56 Aligned_cols=454 Identities=23% Similarity=0.367 Sum_probs=346.4
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh-HHHhhheeE
Q 000830 384 FKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQIGL 462 (1265)
Q Consensus 384 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~ 462 (1265)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 359999999999999999999999999999999999999999999999999876554 345778999
Q ss_pred EccCCccccc-cHHHHhccCCCC-----CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 463 VNQEPALFAT-TIRENILYGKDD-----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 463 v~Q~~~lf~~-ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
|+|++.++.. |++||+.++... ...++..+ .+.+.+..+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 9999988765 999999876421 11122111 122333333 3444455667889999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCchHHH
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1265)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~------ 224 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD------ 224 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH------
Confidence 9999999999999999999999999998875 48999999999999865 999999999999987765443100
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHHHHhhchh
Q 000830 615 ALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPD 694 (1265)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1265)
....
T Consensus 225 ~~~~---------------------------------------------------------------------------- 228 (491)
T PRK10982 225 KIIA---------------------------------------------------------------------------- 228 (491)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 695 WTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVR 774 (1265)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr 774 (1265)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 775 EKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLII 854 (1265)
Q Consensus 775 ~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~ 854 (1265)
.+ +.. ..
T Consensus 229 -----~~-------~~~--~~----------------------------------------------------------- 235 (491)
T PRK10982 229 -----MM-------VGR--SL----------------------------------------------------------- 235 (491)
T ss_pred -----HH-------hCC--Cc-----------------------------------------------------------
Confidence 00 000 00
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 855 SGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFI 934 (1265)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1265)
T Consensus 236 -------------------------------------------------------------------------------- 235 (491)
T PRK10982 236 -------------------------------------------------------------------------------- 235 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccCCC
Q 000830 935 FSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNV 1014 (1265)
Q Consensus 935 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~ 1014 (1265)
.+ ..++. . . ++.
T Consensus 236 --------------------------------------------------------~~-----~~~~~-~--~----~~~ 247 (491)
T PRK10982 236 --------------------------------------------------------TQ-----RFPDK-E--N----KPG 247 (491)
T ss_pred --------------------------------------------------------cc-----ccccc-c--C----CCC
Confidence 00 00000 0 0 001
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHH-HHh
Q 000830 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK-SLR 1093 (1265)
Q Consensus 1015 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~-~lR 1093 (1265)
+..|+++|++++|. ++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|
T Consensus 248 ~~~i~~~~l~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 322 (491)
T PRK10982 248 EVILEVRNLTSLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN 322 (491)
T ss_pred CcEEEEeCcccccC-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHH
Confidence 12589999998752 489999999999999999999999999999999999999999999999999876654 457
Q ss_pred cccEEEecCCC---CCc-ccHHHH-----hccCCC--C-CCHHHHHHHHHHhchHHHHHhCCCCcc-ccccCCCCCCChh
Q 000830 1094 KHIALVQQEPA---LFA-TSIYEN-----ILYGKD--G-ASEGEVIEAAKLANAHSFISALPEGYS-TKVGERGVQLSGG 1160 (1265)
Q Consensus 1094 ~~i~~VpQdp~---LF~-gTIreN-----l~~g~~--~-~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~LSgG 1160 (1265)
+.++|+||++. +|. .|+++| +..... . .+..+..+ ...++++.+ |+. ........+||||
T Consensus 323 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG 395 (491)
T PRK10982 323 HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGG 395 (491)
T ss_pred CCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcH
Confidence 88999999963 565 467666 322111 1 11122111 122334433 221 1234444579999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1161 QkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~ 1238 (1265)
||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. |||+++|++|+++..++.
T Consensus 396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999998864 47899999999999976 999999999999998877
Q ss_pred hhhh
Q 000830 1239 SSLV 1242 (1265)
Q Consensus 1239 ~eLl 1242 (1265)
+++.
T Consensus 476 ~~~~ 479 (491)
T PRK10982 476 KTTT 479 (491)
T ss_pred ccCC
Confidence 6543
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-69 Score=602.92 Aligned_cols=530 Identities=21% Similarity=0.266 Sum_probs=454.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 63 IGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLR 142 (1265)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~ 142 (1265)
+++.+..++....|+++-++-|.+.... ....+....++.+++.++..++.+++.....+++.++..++...+|.
T Consensus 30 lfS~~INiL~L~~~lyMLQVyDRVL~S~-----s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~ 104 (580)
T COG4618 30 LFSAVINLLALTGPLYMLQVYDRVLPSR-----SVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFA 104 (580)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3444445666666778888888876422 12233334445556666777888999999999999999999999999
Q ss_pred HHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 143 SMLNQDISLFDTEASTGEVISAITSDIIVVQDALSE-KVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGM 221 (1265)
Q Consensus 143 ~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~ 221 (1265)
...+.+..-- ..|+=..-+ +|.++++.|++. ....++...|+. +.+.++|.+.+++.++.++...+++.+.++
T Consensus 105 a~~~~~l~~~----~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P-~yl~v~fl~Hp~lG~~a~~ga~iLv~la~l 178 (580)
T COG4618 105 ASFSAPLLRR----GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMP-LYLAVIFLFHPWLGLIALAGAIILVVLALL 178 (580)
T ss_pred HHHhhHHhhc----CCCccccch-hhHHHHHHHHcCCCcchhcCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987666532 334433444 799999999987 444555555554 456667888888999888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 222 YAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWS 301 (1265)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1265)
--+..++-.++..+...+.+...+-+..|.++|++.|+.....++|.+.+..+.....+..-..+.+..+.-.+-.....
T Consensus 179 n~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs 258 (580)
T COG4618 179 NERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQS 258 (580)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888899999999999999999999999999999999999999999888888877777777777777778
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCccc
Q 000830 302 LLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGH 381 (1265)
Q Consensus 302 ~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 381 (1265)
.++..|+|++.+|++|+|.+++..+.......|+-.....+.++..++.|.+|+.+++...|...+ .-+.+..++.
T Consensus 259 ~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~ 334 (580)
T COG4618 259 AVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGA 334 (580)
T ss_pred HHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCce
Confidence 888999999999999999998876655566678888899999999999999999999987654322 2344566789
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
+.++++++.=|+ .++++++|+||++++||.+|||||||||||||.++|.|.++|.+|.|++||-|+++++.+.+-++||
T Consensus 335 L~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG 413 (580)
T COG4618 335 LSVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG 413 (580)
T ss_pred eeEeeeeecCCC-CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC
Confidence 999999997664 4578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000830 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1265)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 541 (1265)
|.||+..||+|||+|||+=..++.+.+.|.+|++.+++||.|..+|+||||.|||.|..|||||||||+||||||.||.+
T Consensus 414 YLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 414 YLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred cCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcE
Confidence 99999999999999999866677889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 542 LLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 542 lllDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
++||||-|+||.+-|..+.++|...+ +|.|+|+||||++.+..+|+|++|++|++...|+-+|++++
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999998876 59999999999999999999999999999999999888764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-70 Score=666.97 Aligned_cols=453 Identities=23% Similarity=0.288 Sum_probs=342.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3889999999964 3489999999999999999999999999999999999999999999999888776767777889
Q ss_pred eEEccCCcc--c-------cccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 461 GLVNQEPAL--F-------ATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 461 ~~v~Q~~~l--f-------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
+|++|++.+ + ..|++||+.++.. ..+++.++++.. |++........+||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK--DPARCEQLAQQF-----------GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh--HHHHHHHHHHHc-----------CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 2 3589998865421 112222222222 23333455667899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1265)
||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++...+
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence 999999999999999999999999999999998875 47899999999999876 9999999999999988766654320
Q ss_pred chHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHHHH
Q 000830 610 NSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYS 689 (1265)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1265)
....+... +
T Consensus 227 --~~~~~~~~--------------------------~------------------------------------------- 235 (490)
T PRK10938 227 --LVAQLAHS--------------------------E------------------------------------------- 235 (490)
T ss_pred --hhhhhhhh--------------------------h-------------------------------------------
Confidence 00000000 0
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 690 MVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERL 769 (1265)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 769 (1265)
T Consensus 236 -------------------------------------------------------------------------------- 235 (490)
T PRK10938 236 -------------------------------------------------------------------------------- 235 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 770 TLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVAT 849 (1265)
Q Consensus 770 ~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~ 849 (1265)
.+ ... ..+.
T Consensus 236 ---------------~~--~~~-~~~~----------------------------------------------------- 244 (490)
T PRK10938 236 ---------------QL--EGV-QLPE----------------------------------------------------- 244 (490)
T ss_pred ---------------cc--Ccc-ccCc-----------------------------------------------------
Confidence 00 000 0000
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000830 850 YPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGI 929 (1265)
Q Consensus 850 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1265)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T PRK10938 245 -------------------------------------------------------------------------------- 244 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCc
Q 000830 930 SQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGE 1009 (1265)
Q Consensus 930 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 1009 (1265)
.. ++......
T Consensus 245 -------------------------------------------------------------------~~-~~~~~~~~-- 254 (490)
T PRK10938 245 -------------------------------------------------------------------PD-EPSARHAL-- 254 (490)
T ss_pred -------------------------------------------------------------------cc-cccccccc--
Confidence 00 00000000
Q ss_pred ccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCcEEEECCcccCC-C
Q 000830 1010 ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-TAGKVMVDGIDIKR-L 1087 (1265)
Q Consensus 1010 ~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~idG~di~~-~ 1087 (1265)
+.....|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. .
T Consensus 255 --~~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 255 --PANEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred --CCCCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCC
Confidence 001125999999999963 3589999999999999999999999999999999998875 69999999987632 2
Q ss_pred CHHHHhcccEEEecCCCCCc---ccHHHHhccCCC-------CCCH---HHHHHHHHHhchHHHHHhCCCCccccccCCC
Q 000830 1088 NLKSLRKHIALVQQEPALFA---TSIYENILYGKD-------GASE---GEVIEAAKLANAHSFISALPEGYSTKVGERG 1154 (1265)
Q Consensus 1088 ~l~~lR~~i~~VpQdp~LF~---gTIreNl~~g~~-------~~sd---~ei~~al~~a~l~~~i~~lp~Gldt~vge~G 1154 (1265)
+...+|++++|+||++.++. .|+++++.++.. .... +++.++++..++.+. ......
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~ 399 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPF 399 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCch
Confidence 33457889999999987642 467777653211 1111 233444444443220 223344
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-C-ceEEEEecCchhhhc--cCEEEEEeCC
Q 000830 1155 VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-K-RTTIIVAHRLSTIKN--ADQISVIESG 1230 (1265)
Q Consensus 1155 ~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~-~TvI~IaHRl~ti~~--~DrI~vl~~G 1230 (1265)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ + .|+|+|||+++.+.. ||++++|++|
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCC
Confidence 57999999999999999999999999999999999999999999999754 4 469999999999974 7999999999
Q ss_pred EEEEec
Q 000830 1231 KIIEQG 1236 (1265)
Q Consensus 1231 ~Ive~G 1236 (1265)
+|++.-
T Consensus 480 ~i~~~~ 485 (490)
T PRK10938 480 DIYRYV 485 (490)
T ss_pred ceEEee
Confidence 998754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=711.44 Aligned_cols=213 Identities=25% Similarity=0.413 Sum_probs=181.5
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCcEEEECCcccCCCCHHHH
Q 000830 1017 TIELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD---PTAGKVMVDGIDIKRLNLKSL 1092 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~~~l~~l 1092 (1265)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|.|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 378999999996322 3569999999999999999999999999999999999997 78899999999985 257
Q ss_pred hcccEEEecCCC-CCcccHHHHhccCC----C-CCCHHH----HHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1093 RKHIALVQQEPA-LFATSIYENILYGK----D-GASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1093 R~~i~~VpQdp~-LF~gTIreNl~~g~----~-~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
|++++||||++. ++..|+||||.++. + +.++++ +.++++..++ .+..|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 899999999876 45679999998642 1 233333 3444444444 34578999998889999999
Q ss_pred HHHHHHHHhccCCC-EEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhh--hccCEEEEEeCC-EEEEecC
Q 000830 1163 QRVAIARAVLKNPE-ILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTI--KNADQISVIESG-KIIEQGT 1237 (1265)
Q Consensus 1163 QrlaLARALlr~p~-ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti--~~~DrI~vl~~G-~Ive~Gt 1237 (1265)
||++|||||+.+|+ ||+||||||+||+.+...|++.|++.. +|+|||+++|+++.. ..||+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999974 579999999999974 569999999997 9999999
Q ss_pred hhh
Q 000830 1238 HSS 1240 (1265)
Q Consensus 1238 ~~e 1240 (1265)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 754
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=660.37 Aligned_cols=478 Identities=21% Similarity=0.357 Sum_probs=340.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 35999999999999999999999999999999999999999999999873 3699
Q ss_pred EEccCCccccc-cHHHHhccCCCCC----------------CHH---HHHHH----------HHHhcHHHHHhcCccccc
Q 000830 462 LVNQEPALFAT-TIRENILYGKDDA----------------TME---EITRA----------AKLSEAMSFISNLPERFE 511 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~l~~g~~ 511 (1265)
|++|++.+|.. |++||+.++.... ..+ .+.+. .....+.+.+..+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988875 9999998753100 000 00000 0011222333333 332
Q ss_pred ccc-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEE
Q 000830 512 TQV-GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIA 589 (1265)
Q Consensus 512 t~~-~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~ 589 (1265)
... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .+.|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 222 235678999999999999999999999999999999999999999999875 48999999999999876 99999
Q ss_pred EEeCCEE-EEeeCcchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhccc
Q 000830 590 VVQGRKI-VKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSH 668 (1265)
Q Consensus 590 ~l~~G~i-~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1265)
+|++|++ ++.|+++++++.....+....+....
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 257 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTAATQARERLLADNAK---------------------------------------------- 257 (530)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 9999999 47888877653200000000000000
Q ss_pred CCCCCCCccchhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHH
Q 000830 669 GAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAA 748 (1265)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1265)
.......
T Consensus 258 -----------~~~~~~~-------------------------------------------------------------- 264 (530)
T PRK15064 258 -----------KKAQIAE-------------------------------------------------------------- 264 (530)
T ss_pred -----------HHHHHHH--------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000830 749 VITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLV 828 (1265)
Q Consensus 749 ~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~ 828 (1265)
++. ... +. . ... .
T Consensus 265 ------------------------~~~-~~~---~~-----~---~~~--------~----------------------- 277 (530)
T PRK15064 265 ------------------------LQS-FVS---RF-----S---ANA--------S----------------------- 277 (530)
T ss_pred ------------------------HHH-HHH---Hh-----h---ccc--------h-----------------------
Confidence 000 000 00 0 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHH
Q 000830 829 TASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRE 908 (1265)
Q Consensus 829 ~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~ 908 (1265)
+
T Consensus 278 -----------------------------------------~-------------------------------------- 278 (530)
T PRK15064 278 -----------------------------------------K-------------------------------------- 278 (530)
T ss_pred -----------------------------------------h--------------------------------------
Confidence 0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 909 LVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQ 988 (1265)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1265)
..... .
T Consensus 279 ---~~~~~-----------------------------------------------------------------------~ 284 (530)
T PRK15064 279 ---AKQAT-----------------------------------------------------------------------S 284 (530)
T ss_pred ---hHHHH-----------------------------------------------------------------------H
Confidence 00000 0
Q ss_pred HHHHHHHH--hcccccccCCC----CcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHH
Q 000830 989 MAASVFEV--LDRKTQVIGDI----GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTV 1062 (1265)
Q Consensus 989 ~~~ri~~~--~~~~~~~~~~~----~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL 1062 (1265)
..+++.+. ...++...... +......+..|+++||+++|++ .++|+|+||+|++||++||+||||||||||
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTL 361 (530)
T PRK15064 285 RAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTL 361 (530)
T ss_pred HHHHHhhccccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHH
Confidence 00000000 00000000000 0000011236999999999963 358999999999999999999999999999
Q ss_pred HHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCC--CCc-ccHHHHhccCC-CCCCHHHHHHHHHHhchH-H
Q 000830 1063 LSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPA--LFA-TSIYENILYGK-DGASEGEVIEAAKLANAH-S 1137 (1265)
Q Consensus 1063 ~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~--LF~-gTIreNl~~g~-~~~sd~ei~~al~~a~l~-~ 1137 (1265)
+++|+|+++|++|+|.++|. ++++|+||++. ++. .|+++|+.... ....++++.++++..++. +
T Consensus 362 l~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 430 (530)
T PRK15064 362 LRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQD 430 (530)
T ss_pred HHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChh
Confidence 99999999999999999982 57999999984 443 59999986422 222344566666666552 2
Q ss_pred HHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchh
Q 000830 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLST 1217 (1265)
Q Consensus 1138 ~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~t 1217 (1265)
. ......+||||||||++||||++.+|+||||||||++||+.+...+.+.|++. ++|||+|||+++.
T Consensus 431 ~-----------~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~ 497 (530)
T PRK15064 431 D-----------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREF 497 (530)
T ss_pred H-----------hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHH
Confidence 2 22334579999999999999999999999999999999999999999999886 4699999999999
Q ss_pred hhc-cCEEEEEeCCEEE-EecChhhhhh
Q 000830 1218 IKN-ADQISVIESGKII-EQGTHSSLVE 1243 (1265)
Q Consensus 1218 i~~-~DrI~vl~~G~Iv-e~Gt~~eLl~ 1243 (1265)
+.. ||+|++|++|+++ ..|+++++++
T Consensus 498 ~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 498 VSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 886 9999999999998 7899999876
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=642.27 Aligned_cols=523 Identities=17% Similarity=0.194 Sum_probs=393.0
Q ss_pred HhhchhhHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 48 AFADFYDYILMSLGSIGACVHGVSVPV-FFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWM 126 (1265)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1265)
++.+++++. ++++++++++..++... .+++.+.++|.... . ...+. .++++.++..++.++..++..
T Consensus 6 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~------~-~~~~~----~~~~~~~~~~~~~~~~~~~~~ 73 (547)
T PRK10522 6 LVWRQYRWP-FISVMALSLASAALGIGLIAFINQRLIETADT------S-LLVLP----EFLGLLLLLMAVTLGSQLALT 73 (547)
T ss_pred HHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------c-chHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 34455555555555444 34556777775421 0 01111 111222233456677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 127 YTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISL 206 (1265)
Q Consensus 127 ~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 206 (1265)
+.+.++..++|.++|++++++|+++|++ +++|++++|+++|++.++.++. .++.++..++.+++.++++++++|.+++
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~-~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~l 151 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQ-LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLL 151 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhc-cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8999999999999999999999999997 5899999999999999998765 4677888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHH
Q 000830 207 VTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGE---DKAVKVYKEALSNTYKYGRKAGL 283 (1265)
Q Consensus 207 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~ 283 (1265)
++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+...
T Consensus 152 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (547)
T PRK10522 152 VTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADT 230 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHH
Confidence 9999999988888888899898889999999999999999999999996 4443 45678888877777666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 000830 284 AKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDT 363 (1265)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 363 (1265)
.......+..++..+...+.+++++.. +..+.+....+.++......|+..+...+..++.++.+.+|+.++++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~ 307 (547)
T PRK10522 231 FHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPY 307 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444333322222222222222333221 11122222222222333446888888899999999999999999875433
Q ss_pred ccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEE
Q 000830 364 MSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (1265)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 443 (1265)
+.+.. ..... +..+.|+++||+|+|+++ .++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 308 ~~~~~--~~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 382 (547)
T PRK10522 308 KAEFP--RPQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382 (547)
T ss_pred ccccc--ccccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 21111 11111 113579999999999742 46899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCCh
Q 000830 444 DGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1265)
Q Consensus 444 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1265)
||+|+++++.+++|++|+||+|||++|++|++|| + +..+++++.++++..+..+++. .++|. .+|.+|||
T Consensus 383 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSg 452 (547)
T PRK10522 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSK 452 (547)
T ss_pred CCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCH
Confidence 9999999999999999999999999999999999 2 3455666666665554443332 12221 14889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEe-e
Q 000830 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKT-G 600 (1265)
Q Consensus 524 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~-g 600 (1265)
|||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTG 532 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999987653 48999999999999999999999999999986 4
Q ss_pred Ccc
Q 000830 601 SHE 603 (1265)
Q Consensus 601 ~~~ 603 (1265)
++.
T Consensus 533 ~~~ 535 (547)
T PRK10522 533 EER 535 (547)
T ss_pred Cch
Confidence 443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=644.99 Aligned_cols=482 Identities=23% Similarity=0.337 Sum_probs=335.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 5899999999962 245999999999999999999999999999999999999999999999752 369
Q ss_pred eEEccCCccccc-cHHHHhccCCCC----------------CC----------HHHHHHHHHH-------hcHHHHHhcC
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDD----------------AT----------MEEITRAAKL-------SEAMSFISNL 506 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~----------------~~----------~~~~~~~~~~-------~~~~~~i~~l 506 (1265)
|||+|+|.+++. |+.||+.++... .. ..++.+.+.. ..+.+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999876 999999875310 00 0011111111 0111222222
Q ss_pred cccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-c
Q 000830 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (1265)
Q Consensus 507 ~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 585 (1265)
|++ .......+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 221 1345567899999999999999999999999999999999999999999998863 599999999999976 9
Q ss_pred CEEEEEeCCEEE-EeeCcchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhh
Q 000830 586 DVIAVVQGRKIV-KTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKES 664 (1265)
Q Consensus 586 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1265)
|+|++|++|+++ ..|+++++.+............
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~--------------------------------------------- 262 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQ--------------------------------------------- 262 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 999999999986 6787766543200000000000
Q ss_pred hcccCCCCCCCccchhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHH
Q 000830 665 VLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILF 744 (1265)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1265)
..+. +.
T Consensus 263 -------------------~~~~----~~--------------------------------------------------- 268 (556)
T PRK11819 263 -------------------EAAR----QK--------------------------------------------------- 268 (556)
T ss_pred -------------------HHHH----HH---------------------------------------------------
Confidence 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000830 745 CCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQN 824 (1265)
Q Consensus 745 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~ 824 (1265)
.++ ++.. |.+. .+.++
T Consensus 269 ---------------------------~~~-~~~~--------~~~~--~~~~~-------------------------- 284 (556)
T PRK11819 269 ---------------------------ALK-RELE--------WVRQ--SPKAR-------------------------- 284 (556)
T ss_pred ---------------------------HHH-HHHH--------HHHH--hhhhh--------------------------
Confidence 000 0000 0000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHH
Q 000830 825 FGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLEL 904 (1265)
Q Consensus 825 ~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~ 904 (1265)
.. ..+ ....+
T Consensus 285 ----------------------------------------~~---~~~---------------------------~~~~~ 294 (556)
T PRK11819 285 ----------------------------------------QA---KSK---------------------------ARLAR 294 (556)
T ss_pred ----------------------------------------HH---HHH---------------------------HHHHH
Confidence 00 000 00000
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 905 YSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLL 984 (1265)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1265)
T Consensus 295 -------------------------------------------------------------------------------- 294 (556)
T PRK11819 295 -------------------------------------------------------------------------------- 294 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHh-cccccccCC-CCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHH
Q 000830 985 KGNQMAASVFEVL-DRKTQVIGD-IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTV 1062 (1265)
Q Consensus 985 ~~~~~~~ri~~~~-~~~~~~~~~-~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL 1062 (1265)
.++..+.. ...++.... ........+..|+++||+++|++ .++|+|+||+|++||++||+||||||||||
T Consensus 295 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTL 366 (556)
T PRK11819 295 -----YEELLSEEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTL 366 (556)
T ss_pred -----HHHhhcccccccCCCceeecCCCCCCCCeEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHH
Confidence 00000000 000000000 00000111236999999999963 358999999999999999999999999999
Q ss_pred HHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCC-CCCc-ccHHHHhccCCCC--C--CHHHHHHHHHHhchH
Q 000830 1063 LSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEP-ALFA-TSIYENILYGKDG--A--SEGEVIEAAKLANAH 1136 (1265)
Q Consensus 1063 ~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp-~LF~-gTIreNl~~g~~~--~--sd~ei~~al~~a~l~ 1136 (1265)
+++|.|+++|++|+|.+++ ++ +++|+||++ .++. -|++||+.++... . .+.+..++++..++.
T Consensus 367 l~~i~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~ 435 (556)
T PRK11819 367 FKMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFK 435 (556)
T ss_pred HHHHhCCCCCCCeEEEECC-ce----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCC
Confidence 9999999999999999954 21 599999997 5654 5999999875321 1 122233333333331
Q ss_pred HHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCch
Q 000830 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLS 1216 (1265)
Q Consensus 1137 ~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ 1216 (1265)
+ .........||||||||++||||++.+|++|||||||++||+.+...+.+.|++. + .|+|+|||+++
T Consensus 436 ~----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~ 503 (556)
T PRK11819 436 G----------GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRW 503 (556)
T ss_pred h----------hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHH
Confidence 1 0123334579999999999999999999999999999999999999999999886 3 49999999999
Q ss_pred hhhc-cCEEEEEeC-CEEEE-ecChhhhhhc
Q 000830 1217 TIKN-ADQISVIES-GKIIE-QGTHSSLVEN 1244 (1265)
Q Consensus 1217 ti~~-~DrI~vl~~-G~Ive-~Gt~~eLl~~ 1244 (1265)
.+.. ||+|++|++ |++.+ .|++++++++
T Consensus 504 ~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 504 FLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9876 999999986 88874 7888888763
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=642.32 Aligned_cols=480 Identities=24% Similarity=0.362 Sum_probs=334.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-----------IKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4899999999962 235999999999999999999999999999999999999999999999752 469
Q ss_pred eEEccCCccccc-cHHHHhccCCCC-----------------C-C--------HHHHHHHHHHhcH-------HHHHhcC
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDD-----------------A-T--------MEEITRAAKLSEA-------MSFISNL 506 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~-----------------~-~--------~~~~~~~~~~~~~-------~~~i~~l 506 (1265)
+||+|+|.+++. |++||+.++... . . ..++.++.+..+. .+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999999865 999999875311 0 0 0112222222221 1222222
Q ss_pred cccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-c
Q 000830 507 PERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-A 585 (1265)
Q Consensus 507 ~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 585 (1265)
|++ .......+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. +.|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 124556789999999999999999999999999999999999999999999876 3699999999999976 9
Q ss_pred CEEEEEeCCEEE-EeeCcchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhh
Q 000830 586 DVIAVVQGRKIV-KTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKES 664 (1265)
Q Consensus 586 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1265)
|+|++|++|+++ ..|+++++.+... ... ..+...
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~~---~~~-~~~~~~----------------------------------------- 260 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQKE---KRL-EQEEKE----------------------------------------- 260 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHHH---HHH-HHHHHH-----------------------------------------
Confidence 999999999976 6787766543200 000 000000
Q ss_pred hcccCCCCCCCccchhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHH
Q 000830 665 VLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILF 744 (1265)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1265)
..+
T Consensus 261 -------------------~~~---------------------------------------------------------- 263 (552)
T TIGR03719 261 -------------------ESA---------------------------------------------------------- 263 (552)
T ss_pred -------------------HHH----------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000830 745 CCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQN 824 (1265)
Q Consensus 745 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~ 824 (1265)
....+ .+..
T Consensus 264 ----------------------------~~~~~-----------------------~~~~-------------------- 272 (552)
T TIGR03719 264 ----------------------------RQKAL-----------------------KREL-------------------- 272 (552)
T ss_pred ----------------------------HHHHH-----------------------HHHH--------------------
Confidence 00000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHH
Q 000830 825 FGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLEL 904 (1265)
Q Consensus 825 ~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~ 904 (1265)
.| .+ +.. ...++ +. + ....+
T Consensus 273 --------------~~-----------------------~~----~~~--------~~~~~-------~~---~-~~~~~ 292 (552)
T TIGR03719 273 --------------EW-----------------------VR----SSP--------KARQA-------KS---K-ARLAR 292 (552)
T ss_pred --------------HH-----------------------HH----hhh--------hhHHH-------HH---H-HHHHH
Confidence 00 00 000 00000 00 0 00000
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 905 YSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLL 984 (1265)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1265)
T Consensus 293 -------------------------------------------------------------------------------- 292 (552)
T TIGR03719 293 -------------------------------------------------------------------------------- 292 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHH-hcccccccCC-CCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHH
Q 000830 985 KGNQMAASVFEV-LDRKTQVIGD-IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTV 1062 (1265)
Q Consensus 985 ~~~~~~~ri~~~-~~~~~~~~~~-~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL 1062 (1265)
.++..+. ....++.... ........+..|+++|++++|++ .++|+|+||+|++||++||+||||||||||
T Consensus 293 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTL 364 (552)
T TIGR03719 293 -----YEELLSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTL 364 (552)
T ss_pred -----HHhhhhhcccccCCCceeecCCCCCCCCeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHH
Confidence 0000000 0000000000 00000111235999999999963 358999999999999999999999999999
Q ss_pred HHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCC-CCc-ccHHHHhccCCCC--CC--HHHHHHHHHHhchH
Q 000830 1063 LSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPA-LFA-TSIYENILYGKDG--AS--EGEVIEAAKLANAH 1136 (1265)
Q Consensus 1063 ~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~-LF~-gTIreNl~~g~~~--~s--d~ei~~al~~a~l~ 1136 (1265)
+++|.|+.+|++|+|.+++ ++ +|+|+||++. ++. .|++||+.++... .. +.+..++++..+
T Consensus 365 l~~l~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~-- 431 (552)
T TIGR03719 365 FRMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFN-- 431 (552)
T ss_pred HHHHcCCCCCCCeEEEECC-ce----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCC--
Confidence 9999999999999999954 22 6999999973 554 5999999875321 11 222223333333
Q ss_pred HHHHhCCCCccc-cccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCc
Q 000830 1137 SFISALPEGYST-KVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRL 1215 (1265)
Q Consensus 1137 ~~i~~lp~Gldt-~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl 1215 (1265)
++. ........||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. ++|+|+|||++
T Consensus 432 ---------l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~ 500 (552)
T TIGR03719 432 ---------FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDR 500 (552)
T ss_pred ---------CChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCH
Confidence 321 123344579999999999999999999999999999999999999999999987 35999999999
Q ss_pred hhhhc-cCEEEEEeC-CEEEE-ecChhhhhh
Q 000830 1216 STIKN-ADQISVIES-GKIIE-QGTHSSLVE 1243 (1265)
Q Consensus 1216 ~ti~~-~DrI~vl~~-G~Ive-~Gt~~eLl~ 1243 (1265)
+.+.. ||+|++|++ |++++ .|+++++.+
T Consensus 501 ~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 501 WFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99886 999999987 68874 578877665
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=627.82 Aligned_cols=471 Identities=20% Similarity=0.231 Sum_probs=371.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 751 TVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTA 830 (1265)
Q Consensus 751 ~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~ 830 (1265)
..++.++..++..+.+.++..++|.++|+++++.|++||++ +++|++++|+++|++.+...+. .+..++..++.+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566778888889999999999999999999999999996 8899999999999999998765 46777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccH---HHHHHHHHH
Q 000830 831 SFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSE---DKVLELYSR 907 (1265)
Q Consensus 831 ~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e---~~~~~~~~~ 907 (1265)
++++++.++|.+++++++.+|+.++..+...+..++...+.++...+..+.+.|.++|+++++ ++.+ +.+.+++.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 899999999999999999888887776666666666666777788888899999999999995 4443 456677777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 908 ELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGN 987 (1265)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 (1265)
..++..+...+..........+...+.....++.++++... +..+.+..............++..+....+.+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666655544444333333332222222223233333322 111222222222222234467888888889999999
Q ss_pred HHHHHHHHHhcccccccCCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 000830 988 QMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL 1067 (1265)
Q Consensus 988 ~~~~ri~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1067 (1265)
.+.+|+.++.+.+++.+... ....+..+.|+|+||+|+|+++ .++|+|+||+|+|||++|||||||||||||+++|+
T Consensus 294 ~a~~ri~~l~~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFPR-PQAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred HHHHHHHHHhcccccccccc-ccccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 99999999875443221111 1111123579999999999743 46899999999999999999999999999999999
Q ss_pred ccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCcc
Q 000830 1068 RFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYS 1147 (1265)
Q Consensus 1068 rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gld 1147 (1265)
|+|+|++|+|++||+|+++++.+++|++++||||||.+|++|+++| + ++.++++++++++.+++.+++.. |+|.
T Consensus 371 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~- 444 (547)
T PRK10522 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR- 444 (547)
T ss_pred CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC-
Confidence 9999999999999999999999999999999999999999999999 2 45678888888888877766542 4442
Q ss_pred ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhccCEEE
Q 000830 1148 TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKNADQIS 1225 (1265)
Q Consensus 1148 t~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~DrI~ 1225 (1265)
.+|.+||||||||++||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|+
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 1478999999999999999999999999999999999999999999998665 4899999999999999999999
Q ss_pred EEeCCEEEEe-cChhhh
Q 000830 1226 VIESGKIIEQ-GTHSSL 1241 (1265)
Q Consensus 1226 vl~~G~Ive~-Gt~~eL 1241 (1265)
+|++|+++|. |++.+-
T Consensus 521 ~l~~G~i~e~~~~~~~~ 537 (547)
T PRK10522 521 EMRNGQLSELTGEERDA 537 (547)
T ss_pred EEECCEEEEecCCchhh
Confidence 9999999997 555443
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=626.23 Aligned_cols=532 Identities=15% Similarity=0.100 Sum_probs=433.5
Q ss_pred HhHHHHHHhhchhhH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHHHHHHH
Q 000830 41 VSLFKLFAFADFYDY----ILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILF 116 (1265)
Q Consensus 41 ~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1265)
..+++++++.+|+++ ..+++.+++.++.+.+....|.+.+.++|.+.... ...+...+..+.++++++.++..+
T Consensus 77 ~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~--~~~f~~~l~~~~l~~~~~~~~~~~ 154 (659)
T TIGR00954 77 GKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRS--PRNFAWILFKWFLIAPPASFINSA 154 (659)
T ss_pred HHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888877654 24566667777777888888889999999875321 111111122233333444445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 117 SSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFII 196 (1265)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 196 (1265)
..++..++......++..++|.+++++....+..+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++.++.
T Consensus 155 ~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~ 232 (659)
T TIGR00954 155 IKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFK 232 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777888888888888998888888999985 5799999999999999999999999999999999988887
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHH
Q 000830 197 GFA-RVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTY 275 (1265)
Q Consensus 197 ~~~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 275 (1265)
++. ++|.+++++++.+|+.+++..++.++..+..++.++..++..+..+|.++|+++||+|+.|+.+.+++++..++..
T Consensus 233 L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~ 312 (659)
T TIGR00954 233 LLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLV 312 (659)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 876 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----cccchhHHHHH-HHH---HHHHHHHHHhhHHHHHH
Q 000830 276 KYGRKAGLAKGLGLGSMHCVLFL--SWSLLVWYVSVVVH-K----HISNGGESFTT-MLN---VVIAGLSLGQAAPDITA 344 (1265)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~-~----~~~~~g~~~~~-~~~---~~~~~~~l~~~~~~~~~ 344 (1265)
+...+..++.+...++..++... ..++.++.|...+. . |.++.|.+++. +.+ +.....|+..+...+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~ 392 (659)
T TIGR00954 313 EHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRD 392 (659)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888777776543 22222333342332 2 67888876653 222 33445688888999999
Q ss_pred HHHHHHHHHHHHHHhccccccccc-------cc--cC-------------CCCCCCcccEEEEeEEEECCCCCCCccccc
Q 000830 345 FIRAKAAAYPIFEMIERDTMSKAS-------SK--TG-------------RKLDKLSGHIEFKDVSFCYPSRPDVAIFDK 402 (1265)
Q Consensus 345 ~~~~~~a~~ri~~~l~~~~~~~~~-------~~--~~-------------~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~ 402 (1265)
++++.++.+|++++++.+++.+.. .. .. .......+.|+++||+|+|+++ .++|+|
T Consensus 393 i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~ 470 (659)
T TIGR00954 393 MTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIES 470 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeec
Confidence 999999999999999764332100 00 00 0011123569999999999742 369999
Q ss_pred eeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCC
Q 000830 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK 482 (1265)
Q Consensus 403 i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~ 482 (1265)
+||++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 471 isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~ 539 (659)
T TIGR00954 471 LSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPD 539 (659)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCC
Confidence 9999999999999999999999999999999999999999874 56799999999999999999999874
Q ss_pred -------CCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHH
Q 000830 483 -------DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555 (1265)
Q Consensus 483 -------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~ 555 (1265)
+..+++++.++++.+++.+++.. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++
T Consensus 540 ~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~ 617 (659)
T TIGR00954 540 SSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDV 617 (659)
T ss_pred ChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 33567888999999999998877 999999876 577999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeC
Q 000830 556 ENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQG 593 (1265)
Q Consensus 556 ~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~ 593 (1265)
++.+.+.+++. |+|+|+||||+++++.||+|++|+.
T Consensus 618 ~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 618 EGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999999774 8999999999999999999999973
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-65 Score=635.38 Aligned_cols=201 Identities=23% Similarity=0.383 Sum_probs=165.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 45899999999999999999999999999999999999999999999741 269
Q ss_pred EEEecCC--CCCc-ccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000830 1097 ALVQQEP--ALFA-TSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLK 1173 (1265)
Q Consensus 1097 ~~VpQdp--~LF~-gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr 1173 (1265)
+|+||++ .++. .|+.+++....+...++++.+.++..++.+ ..+......||||||||++||||++.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 3443 478888742122223344555555444321 11222335799999999999999999
Q ss_pred CCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEE-EecChhhhhh
Q 000830 1174 NPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKII-EQGTHSSLVE 1243 (1265)
Q Consensus 1174 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Iv-e~Gt~~eLl~ 1243 (1265)
+|++|||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999986 4599999999999976 9999999999998 6799988743
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=667.78 Aligned_cols=214 Identities=23% Similarity=0.387 Sum_probs=177.6
Q ss_pred ccEEEEeEEEECCCC----------CCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--CCcEEEECCcc
Q 000830 1016 GTIELRGVHFSYPSR----------PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP--TAGKVMVDGID 1083 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~----------~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~idG~d 1083 (1265)
..+.|+||++.++.. ....+|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999997532 123689999999999999999999999999999999999763 68999999988
Q ss_pred cCCCCHHHHhcccEEEecCCCCCc-ccHHHHhccCC----C-CCCHHH----HHHHHHHhchHHHHHhCCCCccccccCC
Q 000830 1084 IKRLNLKSLRKHIALVQQEPALFA-TSIYENILYGK----D-GASEGE----VIEAAKLANAHSFISALPEGYSTKVGER 1153 (1265)
Q Consensus 1084 i~~~~l~~lR~~i~~VpQdp~LF~-gTIreNl~~g~----~-~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~ 1153 (1265)
..+ ..+|+.++||+|++.++. .|++|||.++. + ..++++ +.+.++..++.+ -.|+.+|..
T Consensus 946 ~~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~ 1015 (1470)
T PLN03140 946 KKQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLP 1015 (1470)
T ss_pred CCh---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCC
Confidence 643 456788999999998775 59999997642 1 223332 445555555543 347777754
Q ss_pred C-CCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchh-h-hccCEEEEEeC
Q 000830 1154 G-VQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLST-I-KNADQISVIES 1229 (1265)
Q Consensus 1154 G-~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~t-i-~~~DrI~vl~~ 1229 (1265)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|||+++|+++. + ..||++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 4 5799999999999999999999999999999999999999999999975 47899999999984 4 56999999996
Q ss_pred -CEEEEecChh
Q 000830 1230 -GKIIEQGTHS 1239 (1265)
Q Consensus 1230 -G~Ive~Gt~~ 1239 (1265)
|+++..|++.
T Consensus 1096 gG~~v~~G~~~ 1106 (1470)
T PLN03140 1096 GGQVIYSGPLG 1106 (1470)
T ss_pred CCEEEEECCcc
Confidence 8999999864
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-64 Score=580.00 Aligned_cols=455 Identities=26% Similarity=0.420 Sum_probs=357.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChH-HHhhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK-WLRQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 459 (1265)
-++++|++++|+ ..++|+|+||++.+||++|++|+||||||||+|+|+|.|+|++|+|.+||++....++. .....
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 488999999997 35799999999999999999999999999999999999999999999999999877775 55667
Q ss_pred eeEEccCCccccc-cHHHHhccCCCCCC------HHHHHHHHHHhcHHHHHhcCc--ccccccccCCCCCCChHHHHHHH
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDDAT------MEEITRAAKLSEAMSFISNLP--ERFETQVGERGIQLSGGQKQRIA 530 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~--~g~~t~~~~~g~~LSgGqkqria 530 (1265)
|+.|+||..|++. ||.|||.+|++... ..++.+.++ +.+..+- ...++.+ .+||+||||-|+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~~~~~~~v----~~LsiaqrQ~Ve 155 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLDIDPDTLV----GDLSIAQRQMVE 155 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCCCChhhhh----hhCCHHHHHHHH
Confidence 9999999999987 99999999975432 233333222 2233331 2244444 579999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCc-chhcc
Q 000830 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH-EELIS 607 (1265)
Q Consensus 531 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~-~~l~~ 607 (1265)
||||+..+++|+|||||||+|+....+.+.+.+++++ +|.++|+||||++++.. ||||.||.||+.+..++. .++-.
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~ 235 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE 235 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH
Confidence 9999999999999999999999999999999999986 59999999999999977 999999999999876542 11100
Q ss_pred CCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHH
Q 000830 608 NPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKL 687 (1265)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1265)
. +++ .
T Consensus 236 ~------~lv-----------------------------------------------------------------~---- 240 (500)
T COG1129 236 D------ELV-----------------------------------------------------------------R---- 240 (500)
T ss_pred H------HHH-----------------------------------------------------------------H----
Confidence 0 000 0
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 688 YSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGE 767 (1265)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 767 (1265)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 768 RLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVV 847 (1265)
Q Consensus 768 ~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l 847 (1265)
.-.|+ +
T Consensus 241 --------------------------~MvGr-------~----------------------------------------- 246 (500)
T COG1129 241 --------------------------LMVGR-------E----------------------------------------- 246 (500)
T ss_pred --------------------------HhhCc-------c-----------------------------------------
Confidence 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000830 848 ATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFY 927 (1265)
Q Consensus 848 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1265)
T Consensus 247 -------------------------------------------------------------------------------- 246 (500)
T COG1129 247 -------------------------------------------------------------------------------- 246 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 000830 928 GISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDI 1007 (1265)
Q Consensus 928 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 1007 (1265)
+.+..+. . ..
T Consensus 247 --------------------------------------------------------------------~~~~~~~-~-~~ 256 (500)
T COG1129 247 --------------------------------------------------------------------LEDLFPE-P-PE 256 (500)
T ss_pred --------------------------------------------------------------------hhhhccc-c-cc
Confidence 0000000 0 00
Q ss_pred CcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCC
Q 000830 1008 GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL 1087 (1265)
Q Consensus 1008 ~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 1087 (1265)
. .+.+..++++|++..- .++|+||++++||++||.|--|||+|-++++|+|..++.+|+|.+||.++.--
T Consensus 257 ~---~~~~~~l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~ 326 (500)
T COG1129 257 E---GIGEPVLEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIR 326 (500)
T ss_pred c---CCCCcEEEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCC
Confidence 0 0011246788876321 47999999999999999999999999999999999989999999999988766
Q ss_pred CHH-HHhcccEEEecCCC---CC-cccHHHHhccCC-CCCCHH-HHHHHHHHhchHHHHHhCC---CCccccccCCCCCC
Q 000830 1088 NLK-SLRKHIALVQQEPA---LF-ATSIYENILYGK-DGASEG-EVIEAAKLANAHSFISALP---EGYSTKVGERGVQL 1157 (1265)
Q Consensus 1088 ~l~-~lR~~i~~VpQdp~---LF-~gTIreNl~~g~-~~~sd~-ei~~al~~a~l~~~i~~lp---~Gldt~vge~G~~L 1157 (1265)
++. ..+..|+|||-|.. || ..+|++|+.+.. ...+.. -+..+.+.....+++..|. .+.+.+++ +|
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~----~L 402 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG----TL 402 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh----cC
Confidence 644 68899999999874 44 669999997751 111111 3445555666777888772 34455554 69
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhh-ccCEEEEEeCCEEEEe
Q 000830 1158 SGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIK-NADQISVIESGKIIEQ 1235 (1265)
Q Consensus 1158 SgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~DrI~vl~~G~Ive~ 1235 (1265)
|||.+|+++|||+|..+|+||||||||.++|..+.+.|.+.|+++. +|++||+||-.+.++. .||||+||.+|+|+..
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999986 5799999999999988 5999999999999985
Q ss_pred cChhh
Q 000830 1236 GTHSS 1240 (1265)
Q Consensus 1236 Gt~~e 1240 (1265)
=+.++
T Consensus 483 ~~~~~ 487 (500)
T COG1129 483 LDREE 487 (500)
T ss_pred ecccc
Confidence 54444
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=622.54 Aligned_cols=201 Identities=29% Similarity=0.480 Sum_probs=164.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 5899999999963 35899999999999999999999999999999999999999999999 5432 59
Q ss_pred EEEecCC-CCCc-ccHHHHhccCCCCC--C--HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1097 ALVQQEP-ALFA-TSIYENILYGKDGA--S--EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1097 ~~VpQdp-~LF~-gTIreNl~~g~~~~--s--d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
+|++|++ .++. .|+.+|+.++.+.. . +.++.+.++..++. ++..+.++ ..||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH------PKRAMTPV----KALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC------HHHHhChh----hhCCHHHHHHHHHHHH
Confidence 9999986 4665 49999998753321 1 22333333333321 11123334 4699999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEe-CCEEEE-ecChhhhhh
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIE-SGKIIE-QGTHSSLVE 1243 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~-~G~Ive-~Gt~~eLl~ 1243 (1265)
|+.+|++|||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. ||+|++|+ +|++++ .|++++.++
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999876 5699999999999976 99999998 899987 478887754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=623.32 Aligned_cols=201 Identities=29% Similarity=0.438 Sum_probs=165.3
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
..|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 369999999999632 3589999999999999999999999999999999999999999999975 347
Q ss_pred cEEEecCCCCCcccHHHHhcc----CCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000830 1096 IALVQQEPALFATSIYENILY----GKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV 1171 (1265)
Q Consensus 1096 i~~VpQdp~LF~gTIreNl~~----g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARAL 1171 (1265)
|+|+||++. ...++.+|... ..+..+++++.++++..++.+.. .......||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHH
Confidence 999999973 22345555321 12334566777777777664211 1223457999999999999999
Q ss_pred ccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEE-EecChhhhh
Q 000830 1172 LKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKII-EQGTHSSLV 1242 (1265)
Q Consensus 1172 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Iv-e~Gt~~eLl 1242 (1265)
+.+|++|||||||++||+.+...+.+.+++. ++|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999999999999999999999875 3599999999999986 9999999999998 578877653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-63 Score=607.29 Aligned_cols=193 Identities=24% Similarity=0.343 Sum_probs=162.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.++++|++++|++ . .|+++||+|++||++||+||||||||||+++|.|+.+|++|+|.++ + ++
T Consensus 340 ~l~~~~ls~~~~~---~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD---F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred EEEEcceEEEECC---E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 5899999999963 2 4999999999999999999999999999999999999999999986 1 59
Q ss_pred EEEecCCCC-CcccHHHHhccCCCCCC-HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000830 1097 ALVQQEPAL-FATSIYENILYGKDGAS-EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174 (1265)
Q Consensus 1097 ~~VpQdp~L-F~gTIreNl~~g~~~~s-d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~ 1174 (1265)
+|+||++.+ ++.|++||+.++..... +..+.++++..++.+..+ .....||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999875 46799999986532222 234455666666554332 33356999999999999999999
Q ss_pred CCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 000830 1175 PEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1175 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~ 1238 (1265)
|++|||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++ ++...|+.
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 999999999999999999999999999754 7899999999999876 999999964 88877763
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-60 Score=591.13 Aligned_cols=526 Identities=15% Similarity=0.100 Sum_probs=422.1
Q ss_pred HHHHHHhhchhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-chhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000830 684 AIKLYSMVRPDWT-----YGVCGTICAIIAGAQMPLFALGVSQALVAYYMDW-DTTQREVKKITILFCCAAVITVIVHAI 757 (1265)
Q Consensus 684 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~ 757 (1265)
+.+++++.+|+|+ .+.+.+++.++...+....+.+.+.+++...... .........+.++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888886 4445555555555555555556666555443211 101111222334444455556666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 758 EHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFI 837 (1265)
Q Consensus 758 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 837 (1265)
..++...+..++..++|++.+++....++.|||. ++|++.+|+++|++.+.+.+...+..++..++.++++++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888999999999888889999984 6899999999999999999999999999999998888887775
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHH
Q 000830 838 -LNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRS 916 (1265)
Q Consensus 838 -~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~ 916 (1265)
++|.+++++++.+|+.++......+...+...+.++..........|.++|+++|++|+.++.+.+++.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888888888888888888899999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh-h----hcccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000830 917 FIRGQIAGIFYGISQFFIFSS--YGLALWYGSVLMG-K----ELASFKSVMKSFMV----LIVTALAMGETLALVPDLLK 985 (1265)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~-~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 985 (1265)
.+...+......+..++.... ....++.|...+. . +.++.+.++..+.. +.....++..+.....++..
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777776432 2222333343332 2 56777776654333 33456678888888999999
Q ss_pred HHHHHHHHHHHhcccccccC------CCC------------------cccCCCcccEEEEeEEEECCCCCCcccccceeE
Q 000830 986 GNQMAASVFEVLDRKTQVIG------DIG------------------EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNL 1041 (1265)
Q Consensus 986 ~~~~~~ri~~~~~~~~~~~~------~~~------------------~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl 1041 (1265)
...+.+|+.++++.+++... ... .......+.|+++||+|+|+++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 99999999999875433110 000 0011134679999999999742 368999999
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCC---
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGK--- 1118 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~--- 1118 (1265)
+|++||++||+||||||||||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 67899999999999999999999864
Q ss_pred ----CCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHH
Q 000830 1119 ----DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194 (1265)
Q Consensus 1119 ----~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~ 1194 (1265)
++.++++++++++.++++++++. |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 34678899999999999999988 999999987 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEecCchhhhccCEEEEEeC
Q 000830 1195 VQQALQRLMRKRTTIIVAHRLSTIKNADQISVIES 1229 (1265)
Q Consensus 1195 I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~ 1229 (1265)
+++.+++. ++|+|+||||++++..||+|++|++
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 8999999999999999999999973
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=544.52 Aligned_cols=462 Identities=26% Similarity=0.444 Sum_probs=358.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh-HHHhhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL-KWLRQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 459 (1265)
.++++|+++.|| ...+++||||++++||++||+|+||+|||||+++|.|+|+|++|+|.+||++++--++ +.+|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 4568999999999999999999999999999999999999999999999999987666 568889
Q ss_pred eeEEccCCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
||+|+|++.|++. ||.|||.+|.+......+..+.....+.+..+.+ |++-...+....||-||||||.|-+|||++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999987 9999999998642110011111111111222221 333334455567999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCchHHHHH
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1265)
|++||||||||-|-|...+.+.+.++++. .|+|||+|||++.++.. |||+.||.+|+++..-+ ..-+.......+|
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~~~~t~~ela~l 236 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD--PVAETTEEELAEL 236 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec--CCCCCCHHHHHHH
Confidence 99999999999999999999999999886 59999999999999987 99999999999864322 1000000000000
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCCCCCCCccchhhhHHHHHHHhhchhhH
Q 000830 617 VQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWT 696 (1265)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1265)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 697 YGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREK 776 (1265)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~ 776 (1265)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 777 MFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISG 856 (1265)
Q Consensus 777 l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~ 856 (1265)
| .|+
T Consensus 237 M------------------vG~---------------------------------------------------------- 240 (501)
T COG3845 237 M------------------VGR---------------------------------------------------------- 240 (501)
T ss_pred h------------------cCC----------------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 857 HISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFS 936 (1265)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1265)
+
T Consensus 241 -------------~------------------------------------------------------------------ 241 (501)
T COG3845 241 -------------E------------------------------------------------------------------ 241 (501)
T ss_pred -------------c------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccCCCcc
Q 000830 937 SYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEG 1016 (1265)
Q Consensus 937 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~g 1016 (1265)
+ ..+.. ..+..|.+.
T Consensus 242 -----------------------------------------------------------v-~~~~~-----~~~~~pg~~ 256 (501)
T COG3845 242 -----------------------------------------------------------V-VLRVV-----KPPSTPGEV 256 (501)
T ss_pred -----------------------------------------------------------c-ccccc-----cCCCCCCCe
Confidence 0 00000 000011123
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCccc-CCCCHHHHh-c
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI-KRLNLKSLR-K 1094 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di-~~~~l~~lR-~ 1094 (1265)
-++++|++..-+ + +.+.+++|||+|++||++||.|-.|.|-+.|+.+|.|+.+|.+|+|.++|.|+ ...+...+| .
T Consensus 257 vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 589999998543 2 24579999999999999999999999999999999999999999999999997 666776655 5
Q ss_pred ccEEEecCCC----CCcccHHHHhccCCCC---------CCHHHHHHHHHHhchHHHHHhC---CCCccccccCCCCCCC
Q 000830 1095 HIALVQQEPA----LFATSIYENILYGKDG---------ASEGEVIEAAKLANAHSFISAL---PEGYSTKVGERGVQLS 1158 (1265)
Q Consensus 1095 ~i~~VpQdp~----LF~gTIreNl~~g~~~---------~sd~ei~~al~~a~l~~~i~~l---p~Gldt~vge~G~~LS 1158 (1265)
.++|||.|.+ ..+-|+.||+.++.-. .+..++.+. ..+.++++ +.+.++++. +||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~-----a~~li~~fdVr~~~~~~~a~----~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKF-----ARELIEEFDVRAPSPDAPAR----SLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHH-----HHHHHHHcCccCCCCCcchh----hcC
Confidence 7999999985 5577999999765322 122334333 23444444 345555554 699
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1159 gGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
||+.||+-+||-|.++|++||..+||-+||..+.+.|++.|.+.. +|+.|++|+-.|+.+.. ||||.||.+|+++...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 999999999999999999999999999999999999999998876 57899999999999876 9999999999999888
Q ss_pred Chhh
Q 000830 1237 THSS 1240 (1265)
Q Consensus 1237 t~~e 1240 (1265)
++++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 8776
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=568.95 Aligned_cols=482 Identities=28% Similarity=0.400 Sum_probs=343.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ +++|+|+||++.+|+++||||+||||||||+++|+|...|++|+|...+. -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4889999999963 46999999999999999999999999999999999999999999998753 269
Q ss_pred eEEccCCccccc-cHHHHhccCCCCCC--HHHHHHHHH------------H-------------hcHHHHHhcCcccccc
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDDAT--MEEITRAAK------------L-------------SEAMSFISNLPERFET 512 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~--~~~~~~~~~------------~-------------~~~~~~i~~l~~g~~t 512 (1265)
+|++|++.+.+. ||.|.+..+..... ..+...+.. . +.+...+..| |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999976 99999987753211 011111100 0 1111222222 2222
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEE
Q 000830 513 QVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVV 591 (1265)
Q Consensus 513 ~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l 591 (1265)
. .....+||||||-|++|||||+.+||+|||||||++||.++..++.+.|.+. +| |+|+|||+..++.+ |++|+-+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 2 3344679999999999999999999999999999999999999999999864 46 99999999999988 9999999
Q ss_pred eCCEEE-EeeCcchhccCCchHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccCCCcccccCcccchhhhcccCC
Q 000830 592 QGRKIV-KTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESVLSHGA 670 (1265)
Q Consensus 592 ~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1265)
+.|++. +.|+|+..++...... .+.....
T Consensus 224 d~g~l~~y~Gny~~~~~~r~~~~-----~~~~~~~--------------------------------------------- 253 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQKAERL-----RQEAAAY--------------------------------------------- 253 (530)
T ss_pred cCCceeEecCCHHHHHHHHHHHH-----HHHHHHH---------------------------------------------
Confidence 999874 4566655443210000 0000000
Q ss_pred CCCCCccchhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHH
Q 000830 671 ADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVI 750 (1265)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1265)
........+...
T Consensus 254 -------~~~~~~~~~~~~------------------------------------------------------------- 265 (530)
T COG0488 254 -------EKQQKELAKEQE------------------------------------------------------------- 265 (530)
T ss_pred -------HHHHHHHHHHHH-------------------------------------------------------------
Confidence 000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 751 TVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTA 830 (1265)
Q Consensus 751 ~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~i~~~~~~~~ 830 (1265)
| +.|+...
T Consensus 266 -------------------------------------~-----------i~r~~~~------------------------ 273 (530)
T COG0488 266 -------------------------------------W-----------IRRGKAA------------------------ 273 (530)
T ss_pred -------------------------------------H-----------HHHHHhc------------------------
Confidence 0 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHHHHHHHHHHHH
Q 000830 831 SFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELV 910 (1265)
Q Consensus 831 ~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~ 910 (1265)
.. ..+++.+
T Consensus 274 ------------------------------------~~-~~k~a~s---------------------------------- 282 (530)
T COG0488 274 ------------------------------------AS-KAKKAKS---------------------------------- 282 (530)
T ss_pred ------------------------------------cc-hHHHHHH----------------------------------
Confidence 00 0000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 911 EPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMA 990 (1265)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 990 (1265)
.....
T Consensus 283 ---------------------------------------------------------------------------r~k~l 287 (530)
T COG0488 283 ---------------------------------------------------------------------------RIKRL 287 (530)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 00000
Q ss_pred HHHHH--HhcccccccC----C-CCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHH
Q 000830 991 ASVFE--VLDRKTQVIG----D-IGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVL 1063 (1265)
Q Consensus 991 ~ri~~--~~~~~~~~~~----~-~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~ 1063 (1265)
+++.+ ....+..... . ........+..++++|+++.|++. .++++++||.|.+|++||||||||+|||||+
T Consensus 288 ~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLl 365 (530)
T COG0488 288 EKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLL 365 (530)
T ss_pred HHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHH
Confidence 01110 0001110000 0 000001123469999999999743 5689999999999999999999999999999
Q ss_pred HHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCC-CCC-cccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHh
Q 000830 1064 SLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEP-ALF-ATSIYENILYGKDGASEGEVIEAAKLANAHSFISA 1141 (1265)
Q Consensus 1064 ~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp-~LF-~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~ 1141 (1265)
++|.|-..|.+|+|.+.- .+ ++||.+|+- .++ +.|+-|++.-..++..+.++...|...++..-
T Consensus 366 k~l~g~~~~~~G~v~~g~-~v----------~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~--- 431 (530)
T COG0488 366 KLLAGELGPLSGTVKVGE-TV----------KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE--- 431 (530)
T ss_pred HHHhhhcccCCceEEeCC-ce----------EEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH---
Confidence 999999999999998843 33 599999998 444 34899999876666567788888777665432
Q ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-
Q 000830 1142 LPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN- 1220 (1265)
Q Consensus 1142 lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~- 1220 (1265)
-..++|+ .||||||-|+.||+.++.+|.+|||||||.+||.+|...+.++|.+. ..|||+|||+-+.+..
T Consensus 432 ---~~~~~v~----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~v 502 (530)
T COG0488 432 ---DQEKPVG----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRV 502 (530)
T ss_pred ---HHhCchh----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhh
Confidence 2334444 69999999999999999999999999999999999999999999886 5699999999999988
Q ss_pred cCEEEEEeCCEEEEe-cChhhhhh
Q 000830 1221 ADQISVIESGKIIEQ-GTHSSLVE 1243 (1265)
Q Consensus 1221 ~DrI~vl~~G~Ive~-Gt~~eLl~ 1243 (1265)
|++|+++++ ++.++ |++++..+
T Consensus 503 a~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 503 ATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred cceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999 88877 88888776
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=476.37 Aligned_cols=238 Identities=26% Similarity=0.450 Sum_probs=224.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
|.|+|+||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|++||+|+..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999743 3468999999999999999999999999999999999998 78999999999999999999999
Q ss_pred cEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000830 1096 IALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNP 1175 (1265)
Q Consensus 1096 i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p 1175 (1265)
|+||||+|.+|++|+++|+++.. ..++++++++++.+++.+++.++|++||+.++++|.+||||||||+|||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997532 35788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHHH
Q 000830 1176 EILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINL 1255 (1265)
Q Consensus 1176 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~~ 1255 (1265)
+||||||||++||+.+++.+++.|++.++++|+|+||||++++..||||++|++|++++.|+|++|++ ..+.|+++++.
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHHHHHhh
Confidence 99999999999999999999999999888999999999999999999999999999999999999998 57899999876
Q ss_pred hh
Q 000830 1256 QQ 1257 (1265)
Q Consensus 1256 ~~ 1257 (1265)
..
T Consensus 237 ~~ 238 (275)
T cd03289 237 SD 238 (275)
T ss_pred cc
Confidence 54
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-52 Score=421.13 Aligned_cols=220 Identities=33% Similarity=0.547 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCC-CCChHHHhhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK-GLDLKWLRQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 459 (1265)
.|+++|++++|++ ..||+|||++|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999973 45999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred eeEEccCCccccc-cHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHh
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal 535 (1265)
+|+|+|+..||+. |+.||+.++.- ..+.++..+ . +.+.+... |+.......+.+|||||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~---~--A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE---K--ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHH---H--HHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence 9999999999987 99999998742 112222221 1 11223322 344445566789999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 536 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
+.+|+++|+|||||||||+....+.+.++++. .|.|.|+|||.+.+.+. ||||+.|++|+|+++|+++++..++.
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999986 58999999999999988 99999999999999999999988754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=404.82 Aligned_cols=218 Identities=34% Similarity=0.549 Sum_probs=194.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccC-CCCHHHHhcc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIK-RLNLKSLRKH 1095 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~-~~~l~~lR~~ 1095 (1265)
.|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999996 346999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred cEEEecCCCCCc-ccHHHHhccCC---CCCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1096 IALVQQEPALFA-TSIYENILYGK---DGASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1096 i~~VpQdp~LF~-gTIreNl~~g~---~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
+|+|+|+..||. -|+-||+.++. ...+. +.-.+.++++|+.|..+..| .+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 999999999996 59999998862 12232 33455677888888877776 4799999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcC
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~ 1245 (1265)
||||.-+|+++++|||||||||+.-..+.+.++++.+ |.|+|+|||.+...++ ||||+.||+|+|+|+|+|+++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 9999999999999999999999999999999999875 6799999999999998 9999999999999999999999876
Q ss_pred CcH
Q 000830 1246 DGA 1248 (1265)
Q Consensus 1246 ~g~ 1248 (1265)
+..
T Consensus 228 ~~~ 230 (240)
T COG1126 228 KSE 230 (240)
T ss_pred CCH
Confidence 543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=426.64 Aligned_cols=223 Identities=37% Similarity=0.613 Sum_probs=192.2
Q ss_pred EEEEeEEEECCCC--CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh---HHH
Q 000830 382 IEFKDVSFCYPSR--PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWL 456 (1265)
Q Consensus 382 i~~~~v~f~y~~~--~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~ 456 (1265)
|++++|++.|+.. +...+|+||||+|++||+.||||+||+|||||++++.++-.|++|+|.+||+|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999852 23568999999999999999999999999999999999999999999999999887765 456
Q ss_pred hhheeEEccCCcccc-ccHHHHhccCCCCC--CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 457 RQQIGLVNQEPALFA-TTIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 457 r~~i~~v~Q~~~lf~-~ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
|++|||++|++.|++ .||.+|++|+..-+ +.+++ ..+..++.+++ |+....+..+.+|||||||||+|||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei--~~RV~elLelV-----gL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI--KQRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHH--HHHHHHHHHHc-----CChhhhccCchhcCcchhhHHHHHH
Confidence 789999999999998 59999999986533 22332 22334444433 2333456778899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
||+.+|+|||.|||||||||+|.+.|.+.|+++.+ |.|+++|||.++.++. |||+.||++|+++|+|+-.++..+|.
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK 234 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc
Confidence 99999999999999999999999999999988753 8999999999999998 99999999999999999999988764
Q ss_pred h
Q 000830 611 S 611 (1265)
Q Consensus 611 ~ 611 (1265)
.
T Consensus 235 ~ 235 (339)
T COG1135 235 H 235 (339)
T ss_pred h
Confidence 3
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-49 Score=450.28 Aligned_cols=228 Identities=32% Similarity=0.532 Sum_probs=201.7
Q ss_pred CCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccC-
Q 000830 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIK- 1085 (1265)
Q Consensus 1012 ~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~- 1085 (1265)
|+..+.|+|+|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+|+.
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 5667899999999999743 3468999999999999999999999999999999999997 57999999999997
Q ss_pred -CCCHHHHhcccEEEecCCCCCcccHHHHhccCCC--CCCHHHHHH-----HHHHhchHHHHHhCCCCccccccCCCCCC
Q 000830 1086 -RLNLKSLRKHIALVQQEPALFATSIYENILYGKD--GASEGEVIE-----AAKLANAHSFISALPEGYSTKVGERGVQL 1157 (1265)
Q Consensus 1086 -~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~sd~ei~~-----al~~a~l~~~i~~lp~Gldt~vge~G~~L 1157 (1265)
..++..+|++++||||+|.+|++|++|||.++.. ..++++.++ +++.++ +++++++.++++|.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccC
Confidence 4566789999999999999999999999997532 344555443 344444 3456778899999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1158 SGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1158 SgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
|||||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999999889999999999999988 9999999999999999
Q ss_pred ChhhhhhcCCc
Q 000830 1237 THSSLVENEDG 1247 (1265)
Q Consensus 1237 t~~eLl~~~~g 1247 (1265)
+|+++..++..
T Consensus 307 ~~~~l~~~~~~ 317 (329)
T PRK14257 307 ETKTIFIHPKN 317 (329)
T ss_pred CHHHHhcCCCc
Confidence 99999875443
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=408.91 Aligned_cols=224 Identities=37% Similarity=0.583 Sum_probs=191.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+|+|||++|. +..+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++...+|++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999997 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccccc-cHHHHhccCCCCC--CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 462 LVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
||-|..-||+. ||.|||.+-..-. +.+++.+ +..++.+.+ .|+.. ......+.+|||||+|||.+||||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~--r~~ELl~lv-gL~p~--~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK--RADELLDLV-GLDPS--EYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHH--HHHHHHHHh-CCCHH--HHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 99999999986 9999998743211 2233222 222222222 23211 134566789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEeeCcchhccCCchHH
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1265)
|+|+|+|||++||||.++..+|+-+.++.+ ++|+|+|||++++.- -||||.+|++|+|+..++|++++.+|...|
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 999999999999999999999999988754 899999999999864 599999999999999999999998875444
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=420.16 Aligned_cols=226 Identities=37% Similarity=0.610 Sum_probs=195.9
Q ss_pred EEEEeEEEECCCC--CCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCC---HHHH
Q 000830 1018 IELRGVHFSYPSR--PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN---LKSL 1092 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~l 1092 (1265)
|++++|++.|+.. +...+|+||||+|++||+.||+|+||||||||++++-|+-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999863 1246899999999999999999999999999999999999999999999998887765 5567
Q ss_pred hcccEEEecCCCCCc-ccHHHHhccCCC--CCCHH----HHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1093 RKHIALVQQEPALFA-TSIYENILYGKD--GASEG----EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1093 R~~i~~VpQdp~LF~-gTIreNl~~g~~--~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
|++||+|+|++.|++ .|+.+|++|+.. ..+.+ .+.+.++.+|+.|..++-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999997 799999998632 23333 4556667777766655544 68999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
+|||||..+|+||+.|||||||||+|-+.|.+.|++..+ |-|+++|||.++.+++ ||||.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999988754 6799999999999998 9999999999999999999998
Q ss_pred hcCCcH-HHHHHH
Q 000830 1243 ENEDGA-YFKLIN 1254 (1265)
Q Consensus 1243 ~~~~g~-f~~l~~ 1254 (1265)
.++... -++++.
T Consensus 231 ~~Pk~~~t~~fi~ 243 (339)
T COG1135 231 ANPKHAITQEFIG 243 (339)
T ss_pred cCcchHHHHHHHH
Confidence 877543 334443
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=435.76 Aligned_cols=237 Identities=26% Similarity=0.435 Sum_probs=219.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
|.|+++|++|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999742 3469999999999999999999999999999999999998 79999999999999999999999
Q ss_pred eeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000830 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1265)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 539 (1265)
|+||||+|.+|++|+++|+....+ .++++++++++..++.+++..+|++++|.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999964322 4578899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHHHH
Q 000830 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619 (1265)
Q Consensus 540 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 619 (1265)
+||||||||++||+.+...+++.|++..+++|+|+||||++++..||+|++|++|++++.|+++++++. .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999987778999999999999989999999999999999999999986 5777777754
Q ss_pred H
Q 000830 620 Q 620 (1265)
Q Consensus 620 ~ 620 (1265)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=394.96 Aligned_cols=221 Identities=33% Similarity=0.554 Sum_probs=198.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCc-----ceEEECCeeCCC--CC
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS-----GEILLDGNNIKG--LD 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-----G~i~~~g~~~~~--~~ 452 (1265)
..++++|+++.|+ ++.+|+|||++|++++++|++|||||||||+++++.|..+..+ |+|.++|+|+.+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999997 3469999999999999999999999999999999999999875 999999999965 57
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCC------CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
...+|++||+|+|.|.-|+.||+||+.||..- .-++-++++++.|.+++.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 89999999999999999999999999998421 123457788899988887643 24567788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||+||||||.-+|+|||||||||||||.+..+|.+.|.+++++-|+|+|||.++...+ +|+..++..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999998866 999999999999999999999
Q ss_pred ccCCc
Q 000830 606 ISNPN 610 (1265)
Q Consensus 606 ~~~~~ 610 (1265)
..+|.
T Consensus 236 F~~P~ 240 (253)
T COG1117 236 FTNPK 240 (253)
T ss_pred hcCcc
Confidence 87753
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=434.16 Aligned_cols=193 Identities=30% Similarity=0.433 Sum_probs=162.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
-|.|+||+|.|++.+ .++++++|-|.++++||+|||||+|||||++++.|...|+.|.|.-.-. .++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 599999999998654 6899999999999999999999999999999999999999998865321 123
Q ss_pred EEEec---CCCCCcccHHHHhccCCCC-CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000830 1097 ALVQQ---EPALFATSIYENILYGKDG-ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172 (1265)
Q Consensus 1097 ~~VpQ---dp~LF~gTIreNl~~g~~~-~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALl 1172 (1265)
++--| +..-++-|.-|+...-.++ .+.+++...+.+.|+..-.+ +.++ .+||+|||.||++||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q------~~p~----~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQ------VVPM----SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccc------ccch----hhcccccchhHHHHHHHh
Confidence 33344 3345677888888765554 56678888888888764333 3334 379999999999999999
Q ss_pred cCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIE 1234 (1265)
Q Consensus 1173 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive 1234 (1265)
+.|.||||||||++||.+|-..+.++|.+. ..+||+|+|+.-.|.. +++|.+.++|.+..
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 999999999999999999999999999876 5689999999999987 99999999999865
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=388.16 Aligned_cols=221 Identities=34% Similarity=0.536 Sum_probs=200.1
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC-----cEEEECCcccCC--CC
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA-----GKVMVDGIDIKR--LN 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~-----G~I~idG~di~~--~~ 1088 (1265)
..++++|+++.|. +..+|+|||++|++++.+|++|||||||||++++|-|+.+... |+|.+||+||.+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999996 3468999999999999999999999999999999999999875 999999999975 68
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCC------CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKD------GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
.-.||+++|+|+|.|.-|..||+||+.||.. ..-|+-++++++.|.+||-+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 9999999999999999999999999999832 1224567899999999998764 24456778999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
|||||||||.-+|+|||||||||||||.+...|.+.|.++.++-|+++|||.+.-..+ +|+...+-.|+++|+|+-+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999998876 999999999999999999999
Q ss_pred hhcCC
Q 000830 1242 VENED 1246 (1265)
Q Consensus 1242 l~~~~ 1246 (1265)
..++.
T Consensus 236 F~~P~ 240 (253)
T COG1117 236 FTNPK 240 (253)
T ss_pred hcCcc
Confidence 87653
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=414.09 Aligned_cols=235 Identities=51% Similarity=0.802 Sum_probs=217.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 246899999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000830 1098 LVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177 (1265)
Q Consensus 1098 ~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1177 (1265)
|+||++.+|+.|++||+.++....+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999886544556677788888899999999999999999999999999999999999999999999
Q ss_pred EEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHH
Q 000830 1178 LLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLIN 1254 (1265)
Q Consensus 1178 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~ 1254 (1265)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++++ ..+.|..+++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh-ccChHHHHHh
Confidence 999999999999999999999999877899999999999998899999999999999999999998 5788888764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=391.33 Aligned_cols=222 Identities=33% Similarity=0.549 Sum_probs=196.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999997 346899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCc-ccHHHHhccCC--CCCCH----HHHHHHHHHhchH--HHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1098 LVQQEPALFA-TSIYENILYGK--DGASE----GEVIEAAKLANAH--SFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1098 ~VpQdp~LF~-gTIreNl~~g~--~~~sd----~ei~~al~~a~l~--~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
||-|.--||. -||.|||..-. ...+. +.+.+-++++++. +|.++.| ..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 9999999995 59999997631 12333 4455666677774 3655555 57999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcC
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~ 1245 (1265)
|||..+|+||++|||.+||||-|...+|+-+.+..+ ++|+|+|||++++... +|||+||++|+|+.+|+|+++++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988764 7899999999999655 9999999999999999999999988
Q ss_pred CcHHHHHH
Q 000830 1246 DGAYFKLI 1253 (1265)
Q Consensus 1246 ~g~f~~l~ 1253 (1265)
...|-+-+
T Consensus 228 an~FV~~f 235 (309)
T COG1125 228 ANDFVEDF 235 (309)
T ss_pred cHHHHHHH
Confidence 77775443
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=417.23 Aligned_cols=241 Identities=31% Similarity=0.556 Sum_probs=223.3
Q ss_pred CcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHh
Q 000830 1014 VEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR 1093 (1265)
Q Consensus 1014 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 1093 (1265)
..|.|+++|++++|+.. ..++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999742 24689999999999999999999999999999999999999999999999999998888999
Q ss_pred cccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000830 1094 KHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLK 1173 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr 1173 (1265)
++++|+||+|.+|++|++||+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999997642 234567888889999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHH
Q 000830 1174 NPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1174 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~ 1253 (1265)
+|++|||||||++||++++..+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++++..++.|+.++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999988778999999999999999999999999999999999999987778899888
Q ss_pred HHh
Q 000830 1254 NLQ 1256 (1265)
Q Consensus 1254 ~~~ 1256 (1265)
..+
T Consensus 254 ~~~ 256 (257)
T cd03288 254 RTD 256 (257)
T ss_pred hcc
Confidence 654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=430.53 Aligned_cols=226 Identities=29% Similarity=0.490 Sum_probs=196.6
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCC-
Q 000830 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG- 450 (1265)
Q Consensus 377 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~- 450 (1265)
+..+.|+++|++|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 445689999999999642 3469999999999999999999999999999999999997 579999999999973
Q ss_pred -CChHHHhhheeEEccCCccccccHHHHhccCCCC--CCHHHHH-----HHHHHhcHHHHHhcCcccccccccCCCCCCC
Q 000830 451 -LDLKWLRQQIGLVNQEPALFATTIRENILYGKDD--ATMEEIT-----RAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1265)
Q Consensus 451 -~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~~~~~~-----~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1265)
.+...+|+.++||||+|++|++||+|||.|+... .++++.+ ++++.+ .+++++++.++++|.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~-------~L~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSA-------ALWDEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHc-------CCcchhhhhhhCCcccCC
Confidence 4556789999999999999999999999987421 2333332 222222 255567788999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeC
Q 000830 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 523 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 601 (1265)
||||||++|||||+++|+|||||||||+||+++...+++.|+++.+++|+|+|||+++++.. ||+|++|++|+|++.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998888999999999999987 99999999999999999
Q ss_pred cchhccCCc
Q 000830 602 HEELISNPN 610 (1265)
Q Consensus 602 ~~~l~~~~~ 610 (1265)
++++...+.
T Consensus 308 ~~~l~~~~~ 316 (329)
T PRK14257 308 TKTIFIHPK 316 (329)
T ss_pred HHHHhcCCC
Confidence 999987543
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=379.78 Aligned_cols=470 Identities=19% Similarity=0.235 Sum_probs=350.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000830 108 VYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYI 187 (1265)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~srl~~D~~~i~~~~~~~~~~~~~~~ 187 (1265)
.++.++..+.+.+........++.+..++|.++.++++.-|+.-+++ -+++.++.++++|+..|. +-...++.+....
T Consensus 55 ~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~ 132 (546)
T COG4615 55 LGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSARLLAGLTSDVRNIS-FAFSRLPELVQAI 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hcccchhhhhccccccee-ehHhhhHHHHHHH
Confidence 33334444556666677788899999999999999999999999997 689999999999999998 4445678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH--HHH
Q 000830 188 SRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDK--AVK 265 (1265)
Q Consensus 188 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~Ik~~~~e~~--~~~ 265 (1265)
..++++.+++.|+|+++.++.++.+.+..+...+...+..+.....++..+++.+..+-.++|-+..+...--.+ ..+
T Consensus 133 il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~ 212 (546)
T COG4615 133 ILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNN 212 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhh
Confidence 999999999999999998888888878778888888888888999999999999999999999999988653322 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000830 266 VYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAF 345 (1265)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 345 (1265)
.|....+...+..............+.+++.+..+.+++|.... -+.-+.....++.+..+....|+.+....+..+
T Consensus 213 ~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~---~~w~st~~a~tivlvlLflr~pL~s~vgilP~l 289 (546)
T COG4615 213 LYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS---LGWASTNVAATIVLVLLFLRTPLLSAVGILPTL 289 (546)
T ss_pred hcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHhhHHHHHHhhhhHH
Confidence 33332223333211111111112222333333333334443221 122222233333344445556888888899999
Q ss_pred HHHHHHHHHHHHHhccccccccccccCCCCCCCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHH
Q 000830 346 IRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKST 425 (1265)
Q Consensus 346 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKST 425 (1265)
.+|.+|.++|.++-..++..+- + .....+. -..|+++||.|+|++.. .-+.-||++|++||++-|+|.|||||||
T Consensus 290 ~~AqvA~~kiakle~~~~~a~~-~-~~q~~p~-~~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGKST 364 (546)
T COG4615 290 LTAQVAFNKIAKLELAPYKADF-P-RPQAFPD-WKTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGKST 364 (546)
T ss_pred HHHHHHHHHHHHhhcCCccccC-C-CCCcCCc-ccceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcHHH
Confidence 9999999999887543322111 1 1111122 34799999999997432 3578899999999999999999999999
Q ss_pred HHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccHHHHhccCCCC-CCHHHHHHHHHHhcHHHHHh
Q 000830 426 VISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD-ATMEEITRAAKLSEAMSFIS 504 (1265)
Q Consensus 426 l~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~ 504 (1265)
++++|.|+|.|++|+|++||+++..-++++.|+-++-|+-|.|||+.++ |.+. ++.+.+..-.+.-++....
T Consensus 365 ~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt- 437 (546)
T COG4615 365 LAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT- 437 (546)
T ss_pred HHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-
Confidence 9999999999999999999999999999999999999999999998764 3333 5555554444333222222
Q ss_pred cCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhh
Q 000830 505 NLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI 582 (1265)
Q Consensus 505 ~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~ 582 (1265)
++.+|--+ ...||-|||.|+|+--|++-+.||++|||=-+--||.=++.+.+.+.... .|||++.|||+=...
T Consensus 438 sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF 512 (546)
T COG4615 438 SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF 512 (546)
T ss_pred cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh
Confidence 22222111 24699999999999999999999999999999999999998887765443 499999999999999
Q ss_pred hccCEEEEEeCCEEEEe
Q 000830 583 RNADVIAVVQGRKIVKT 599 (1265)
Q Consensus 583 ~~~d~i~~l~~G~i~~~ 599 (1265)
..|||++.|++|+++|.
T Consensus 513 ~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 513 IHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhHHHHHHHhcCceeec
Confidence 99999999999999875
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=451.93 Aligned_cols=207 Identities=24% Similarity=0.399 Sum_probs=171.5
Q ss_pred CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC---CcceEEECCeeCCCCChHHHhhheeEEccCCccccc-
Q 000830 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP---LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT- 472 (1265)
Q Consensus 397 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 472 (1265)
..+|+|++.-++||+.+.+.||.|||||||++.|+|-.+- ..|+|.+||.+.++..+ ++.++|++|+..-|+.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4689999999999999999999999999999999998764 35799999999988776 7789999999988876
Q ss_pred cHHHHhccCC----CCCCHHHHHHHHH---HhcHHHHHhcCcccccccccCCC-CCCChHHHHHHHHHHHhccCCCEEEE
Q 000830 473 TIRENILYGK----DDATMEEITRAAK---LSEAMSFISNLPERFETQVGERG-IQLSGGQKQRIAISRAIVKNPSILLL 544 (1265)
Q Consensus 473 ti~~ni~~~~----~~~~~~~~~~~~~---~~~~~~~i~~l~~g~~t~~~~~g-~~LSgGqkqriaiARal~~~~~illl 544 (1265)
||||-+-|.. +..+.+++.+..+ ..+..-.+-.|....||.||... ...|||||.||++|-+++.+|+++..
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 9999998752 2111222222222 22222235568888999999876 56999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCch--hhhccCEEEEEeCCEEEEeeCcchhc
Q 000830 545 DEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLS--TIRNADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 545 DE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
||+|.+||..|.-++.++|+++.+ +.|.++.=|+.+ +....|.|++|.+|+++..|+.++.+
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999999998753 778888888765 45669999999999999999998875
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=407.66 Aligned_cols=234 Identities=49% Similarity=0.807 Sum_probs=213.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 246999999999999999999999999999999999999999999999999998888788889999
Q ss_pred EEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000830 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1265)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 541 (1265)
|++|++++|+.|++||+.++.+....+++.++++..++.+.+..+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987654455667777777788889999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHH
Q 000830 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1265)
Q Consensus 542 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 617 (1265)
|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++..+ .+.|..++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999999999999999999999988778999999999999988999999999999999999998876 66776654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=381.91 Aligned_cols=228 Identities=33% Similarity=0.539 Sum_probs=191.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChH---HH
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WL 456 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~ 456 (1265)
..|++++|+|+|++ +.+++|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|+++.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 46999999999964 4599999999999999999999999999999999999999999999999999888764 57
Q ss_pred hhheeEEccCCccccc-cHHHHhccCCCCC---CHHHHHHHHHHhcHHHHHhcCccccccc-ccCCCCCCChHHHHHHHH
Q 000830 457 RQQIGLVNQEPALFAT-TIRENILYGKDDA---TMEEITRAAKLSEAMSFISNLPERFETQ-VGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqriai 531 (1265)
|+++|+++|+..||+. ||+||+.|...+. ..+.+.+-+ ... ++.. |+... ....+.+||||++.|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv-~~K----L~~V--GL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV-LMK----LELV--GLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH-HHH----HHhc--CCChhhhhhCchhhcchHHHHHHH
Confidence 8999999999999987 9999999964322 333333221 111 1110 22222 223457899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|||+..||+|+++|||||+|||.+...+.+.|+++.+ +.|+|+|||+++++.. ||+|+++.+|+|+..|+++|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988864 8999999999999987 899999999999999999999987
Q ss_pred CchHHHHHH
Q 000830 609 PNSAYAALV 617 (1265)
Q Consensus 609 ~~~~~~~~~ 617 (1265)
++...+++.
T Consensus 237 d~P~v~qf~ 245 (263)
T COG1127 237 DDPWVRQFF 245 (263)
T ss_pred CCHHHHHHh
Confidence 655555443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=411.92 Aligned_cols=217 Identities=35% Similarity=0.555 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++||+++|++. .+++|+||+|++||+++|+|||||||||+|++|+|+.+|++|+|.|||.++++++++. ++|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 1899999999999999999999999999999999999999999999999999988875 679
Q ss_pred eEEccCCccccc-cHHHHhccCCCCC------CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
|+|+|+..||+. ||+|||.||.... -++++.++++..++.+.++ .++.+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHH
Confidence 999999999987 9999999997533 2345566666665555444 455689999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
||+++|+++|||||+|+||++.+..+...|+++.+ +.|+|.|||+..++.. ||||.||++|+|.+.|++.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999888888754 7899999999998866 99999999999999999999998765
Q ss_pred hHH
Q 000830 611 SAY 613 (1265)
Q Consensus 611 ~~~ 613 (1265)
..+
T Consensus 227 n~f 229 (338)
T COG3839 227 NLF 229 (338)
T ss_pred chh
Confidence 443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=397.11 Aligned_cols=214 Identities=36% Similarity=0.558 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.++++|++|+|++ +++|+|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999973 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccCCcc-ccccHHHHhccCCCCC-------C---HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHH
Q 000830 461 GLVNQEPAL-FATTIRENILYGKDDA-------T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 461 ~~v~Q~~~l-f~~ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1265)
|||||++.. |.-||+|-+.+|+... + .+.+.+|.+..++.++. ...-.+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHHHHH
Confidence 999999754 5569999999996321 1 22456666666655543 233467999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhh-hccCEEEEEeCCEEEEeeCcchhc
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 530 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
.|||||+++|+||+||||||+||...+-.+++.++++. +|+|+|+|.|+++.. +.||++++|++|+++..|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999986 389999999999876 569999999999999999999998
Q ss_pred cC
Q 000830 607 SN 608 (1265)
Q Consensus 607 ~~ 608 (1265)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-45 Score=402.03 Aligned_cols=234 Identities=53% Similarity=0.846 Sum_probs=217.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 35899999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000830 1098 LVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177 (1265)
Q Consensus 1098 ~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1177 (1265)
|+||+|.+|++|++||+.++....+++++.++++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999887655667778888888999999999999999999999999999999999999999999999
Q ss_pred EEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHHH
Q 000830 1178 LLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLIN 1254 (1265)
Q Consensus 1178 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~~ 1254 (1265)
|||||||++||+++...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+++++.+ ..+.|..++.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~-~~~~~~~~~~ 234 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWK 234 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh-cccHHHHHHh
Confidence 999999999999999999999998877889999999999998899999999999999999999987 5677777664
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=401.73 Aligned_cols=235 Identities=62% Similarity=0.983 Sum_probs=214.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++..+.++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533346899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000830 1098 LVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177 (1265)
Q Consensus 1098 ~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1177 (1265)
|+||+|.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++.+.....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999886555556677778888899999999999999999999999999999999999999999999
Q ss_pred EEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHHH
Q 000830 1178 LLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1178 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~ 1253 (1265)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+ ..+.+++++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh-cChhHHHHh
Confidence 999999999999999999999998877899999999999998999999999999999999999987 556565554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-45 Score=401.39 Aligned_cols=233 Identities=58% Similarity=0.933 Sum_probs=214.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++. ..++++|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999743 235899999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000830 1098 LVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177 (1265)
Q Consensus 1098 ~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1177 (1265)
|+||+|.+|..|++||+.++....+.+++.+.++..++.++++.+|.|+++.++....+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999887555566677788888899999999999999999999999999999999999999999999
Q ss_pred EEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHHHH
Q 000830 1178 LLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKL 1252 (1265)
Q Consensus 1178 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l 1252 (1265)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.. ..+.|+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~ 233 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA-QGGVYAKL 233 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH-cCcchhhh
Confidence 999999999999999999999999888899999999999998899999999999999999999987 45655543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=396.29 Aligned_cols=221 Identities=33% Similarity=0.625 Sum_probs=207.1
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999743 2468999999999999999999999999999999999999999999999999998888889999
Q ss_pred cEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000830 1096 IALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNP 1175 (1265)
Q Consensus 1096 i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p 1175 (1265)
++|+||+|.+|++|++||+.+.. ..+.+++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998653 35677889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 000830 1176 EILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1176 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~ 1238 (1265)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 999999999999999999999999998778999999999999999999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=402.81 Aligned_cols=240 Identities=31% Similarity=0.503 Sum_probs=217.5
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH
Q 000830 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1265)
Q Consensus 377 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1265)
...+.|+++|++++|++. +..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 356789999999999742 2459999999999999999999999999999999999999999999999999988888888
Q ss_pred hhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
|+.|+||+|+|++|++|++||+..... ...+++.++.+..++.+.+..+|.|+++.+++.+.+||||||||++|||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999976432 2345667777777888899999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHH
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1265)
++|++|||||||++||++++..+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+...+.|+++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999988777899999999999998899999999999999999999987656667776
Q ss_pred HH
Q 000830 617 VQ 618 (1265)
Q Consensus 617 ~~ 618 (1265)
+.
T Consensus 253 ~~ 254 (257)
T cd03288 253 VR 254 (257)
T ss_pred Hh
Confidence 54
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=398.26 Aligned_cols=226 Identities=52% Similarity=0.889 Sum_probs=211.5
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
|.|+++|++++|++. .++++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 468999999999632 358999999999999999999999999999999999999999999999999988888889999
Q ss_pred cEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000830 1096 IALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNP 1175 (1265)
Q Consensus 1096 i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p 1175 (1265)
++|+||++.+|.+|++||+.++.+...++++.++++..++.++++.+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998876555667788888899999999999999999999999999999999999999999999
Q ss_pred CEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1176 EILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1176 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999877899999999999998899999999999999999988876
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=377.43 Aligned_cols=216 Identities=35% Similarity=0.561 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCC---hHHHh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWLR 457 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r 457 (1265)
.|+++||+..||+ ++.+|+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.++.... ...+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 457999999999999999999999999999999999999999999999999988776 55678
Q ss_pred hheeEEccCCccccc-cHHHHhccCCCCC-----------CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 458 QQIGLVNQEPALFAT-TIRENILYGKDDA-----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
++|||++|++.|.+. ||.+|+..|+-.. +.++-.. +.+-++.+ |+....-.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~------Al~aLerv--gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQ------ALDALERV--GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHH------HHHHHHHc--CcHHHHHHHhccCCcch
Confidence 899999999999976 9999999886432 2222211 11222222 22223445677999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCc
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1265)
+|||+|||||+++|+|+|-|||+|+|||.+.+.+++.|++.. .|.|+|+.-|.++..++ ||||+-|++|+|+.+|+.
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999999875 48999999999999876 999999999999999999
Q ss_pred chhc
Q 000830 603 EELI 606 (1265)
Q Consensus 603 ~~l~ 606 (1265)
+|+-
T Consensus 233 ~el~ 236 (258)
T COG3638 233 SELT 236 (258)
T ss_pred hhhh
Confidence 9863
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=412.36 Aligned_cols=218 Identities=37% Similarity=0.595 Sum_probs=190.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
..++++||+++|+ +..+++|+||+|++||+++++|||||||||+|++|+||.+|++|+|.+||+++...+++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999997 45699999999999999999999999999999999999999999999999999998776 468
Q ss_pred eeEEccCCccccc-cHHHHhccCCCC---CCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDD---ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
|++|+|+..||+. ||+|||.||... ...+ .+.++.++.++.++ -..++.+|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~-----------~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGF-----------ADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhh-----------hhhChhhhChHHHHHHHH
Confidence 9999999999986 999999999751 1222 45555555554443 345567899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEeeCcchhccC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
||||..+|++||||||.||||.+-+..++..++++. .|.|.|+|||+-++.- .+|||+||++|+|...|+++|+..+
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999998888764 3899999999998864 5999999999999999999999988
Q ss_pred CchHH
Q 000830 609 PNSAY 613 (1265)
Q Consensus 609 ~~~~~ 613 (1265)
|...|
T Consensus 228 P~~~f 232 (352)
T COG3842 228 PATRF 232 (352)
T ss_pred cchHH
Confidence 75544
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=416.28 Aligned_cols=225 Identities=32% Similarity=0.517 Sum_probs=193.2
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH---Hh
Q 000830 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS---LR 1093 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 1093 (1265)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 246999999999999999999999999999999999999999999999999999887554 58
Q ss_pred cccEEEecCCCCCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000830 1094 KHIALVQQEPALFA-TSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~-gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrla 1166 (1265)
++|+||||++.+|. .|++||+.++.. ..+. +.+.++++.+++.++.+.. ...||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999995 799999987531 2232 3456677777776654433 3579999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||||+.+|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999864 7899999999999976 99999999999999999999987
Q ss_pred cCCcHH-HHHH
Q 000830 1244 NEDGAY-FKLI 1253 (1265)
Q Consensus 1244 ~~~g~f-~~l~ 1253 (1265)
++...+ ..++
T Consensus 231 ~p~~~~~~~~~ 241 (343)
T TIGR02314 231 HPKTPLAQKFI 241 (343)
T ss_pred CCCcHHHHHHH
Confidence 554444 3343
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=354.68 Aligned_cols=209 Identities=36% Similarity=0.568 Sum_probs=186.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|.+++|.|+|...+ =.++++|++||++||+||||||||||+|+|+||..|.+|+|.|||+|.....+.+ +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 56789999996432 3589999999999999999999999999999999999999999999988776653 5699
Q ss_pred EEccCCccccc-cHHHHhccCCC-CC-----CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 462 LVNQEPALFAT-TIRENILYGKD-DA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~-~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
+++||..||.. ||++||.+|.. .. ..+.+..++...++..+...||. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999987 99999999963 21 34667888888899888888884 699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|+++-|||+||||+|+|||.-+......+.++. ++.|++||||+++.++. +|+++++++|+|.++|+.+++...
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999988888887775 48899999999999876 999999999999999999998865
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=402.09 Aligned_cols=211 Identities=27% Similarity=0.366 Sum_probs=170.2
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhc
Q 000830 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK 1094 (1265)
Q Consensus 1015 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 1094 (1265)
+..+++.+|+|.|++.+. +.++++++.+..-+++++||++|+||||+++++.+-..|..|.+-+.+ |.
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 347999999999985433 789999999999999999999999999999999999999999988865 77
Q ss_pred ccEEEecCCCCC-cccHHH--HhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCC-CCCChhHHHHHHHHHH
Q 000830 1095 HIALVQQEPALF-ATSIYE--NILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERG-VQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1095 ~i~~VpQdp~LF-~gTIre--Nl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G-~~LSgGQkQrlaLARA 1170 (1265)
+|+|-.|.-+=| +-.+-. -+.--.|+.+++|+.+.|...|+.. ++.-.+ ..||||||=|+++|-+
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g-----------~la~~si~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSG-----------ELALQSIASLSGGQKSRVAFAAC 496 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCc-----------hhhhccccccCCcchhHHHHHHH
Confidence 899999976533 222211 1111245668999999987776543 333333 4699999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCCcHH
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAY 1249 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f 1249 (1265)
.+.+|.+|||||||..||-++-.++-++|+.. +.-||+|||+.+.+.. |+.++|.++|+|.-. +-....|
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i-------eg~~~~y 567 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI-------EGGIDKY 567 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEee-------eccHHHH
Confidence 99999999999999999999999999999876 4579999999999987 999999999999762 2112246
Q ss_pred HHHHHHhh
Q 000830 1250 FKLINLQQ 1257 (1265)
Q Consensus 1250 ~~l~~~~~ 1257 (1265)
.++...+.
T Consensus 568 Kkl~~~e~ 575 (582)
T KOG0062|consen 568 KKLLGAEL 575 (582)
T ss_pred HHHHHHHH
Confidence 77766553
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=360.32 Aligned_cols=207 Identities=32% Similarity=0.522 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh---HHHhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1265)
|+|+||+++|++. .++|+||||+|++||++-++||||||||||+|+|.+...|+.|+|.++|+|+..+.. .-+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999864 569999999999999999999999999999999999999999999999999987754 56899
Q ss_pred heeEEccCCccccc-cHHHHhccCCCCC------CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 459 QIGLVNQEPALFAT-TIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
+||+|+||..|... ||.||++|...-. -.+++.++++..++.+....|| .+||||||||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 99999999988866 9999999865321 2345666777777777776666 4799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 601 (1265)
|||++.+|++||-||||.+|||.+...|++.+.++. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999998875 59999999999999987 56999999999987644
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=375.41 Aligned_cols=228 Identities=29% Similarity=0.500 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCC-CHHHHhc
Q 000830 1017 TIELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL-NLKSLRK 1094 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~-~l~~lR~ 1094 (1265)
.++++|+++.|+.+.. .++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.+.... +....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4899999999975421 2589999999999999999999999999999999999999999999999877653 3446788
Q ss_pred ccEEEecCCC--CC-cccHHHHhccC----CCCCCHHHHHHHHHHhchHH-HHHhCCCCccccccCCCCCCChhHHHHHH
Q 000830 1095 HIALVQQEPA--LF-ATSIYENILYG----KDGASEGEVIEAAKLANAHS-FISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1095 ~i~~VpQdp~--LF-~gTIreNl~~g----~~~~sd~ei~~al~~a~l~~-~i~~lp~Gldt~vge~G~~LSgGQkQrla 1166 (1265)
.+.+|+|||. |= .-||++-|.=+ .-+....+++++++.+++.+ |....| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 9999999996 21 23666665322 11233566899999999865 344444 569999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCc--eEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~--TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||||.-+|++||||||||+||.-.++.|++.+.+..+++ |.|+|||+++.+.. ||||+||++|+++|.++-.++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999988765 99999999999998 99999999999999999999998
Q ss_pred cCCcHHHHHHHH
Q 000830 1244 NEDGAYFKLINL 1255 (1265)
Q Consensus 1244 ~~~g~f~~l~~~ 1255 (1265)
.....|.+..-.
T Consensus 232 ~~~h~ytr~Ll~ 243 (252)
T COG1124 232 HPSHPYTRELLE 243 (252)
T ss_pred CCccHHHHHHHH
Confidence 656667665543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=380.14 Aligned_cols=198 Identities=35% Similarity=0.522 Sum_probs=167.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4789999999974 5699999999999999999999999999999999999999999999999987433 3469
Q ss_pred eEEccCCcccc-ccHHHHhccCCCCC--CH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 461 GLVNQEPALFA-TTIRENILYGKDDA--TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
+||+|++.||+ -||+||+.+|.... +. +.+.+..+..++ ...-...+.+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL-----------~~~~~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGL-----------AGFEDKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCC-----------cchhhcCccccChHHHHHHHHHH
Confidence 99999999998 49999999987542 11 223333333333 33344566789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeC--CEEE
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG--RKIV 597 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~--G~i~ 597 (1265)
||+.+|+||+||||++|||+.|+..+++.+.++. .++|+++|||++++.-. +|||++|.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999998874 37999999999998755 999999999 4553
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=396.43 Aligned_cols=233 Identities=52% Similarity=0.811 Sum_probs=212.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++|++++|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 35899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000830 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1265)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 541 (1265)
|++|++++|+.|++||+.++.+..+.+++.++++..++.+.+..+|.|+++.+..++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999988665566667777777788888899999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHHHHH
Q 000830 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617 (1265)
Q Consensus 542 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 617 (1265)
|||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++... ...|+.++
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~ 233 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMW 233 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHH
Confidence 9999999999999999999999888668999999999999988999999999999999998888765 45555443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=396.23 Aligned_cols=226 Identities=57% Similarity=0.886 Sum_probs=207.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999743 235899999999999999999999999999999999999999999999999988777778889999
Q ss_pred EEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000830 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1265)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 541 (1265)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+.+..+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999988655555667777777788889999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 542 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999988779999999999999988999999999999999999888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=377.73 Aligned_cols=209 Identities=36% Similarity=0.537 Sum_probs=170.9
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH---H-
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L- 456 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~- 456 (1265)
++++||++.|.... ...+|+++||+|++||++||+||||||||||+++|.|+..|++|+|.++|+|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246999999999999999999999999999999999999999999999999999887543 3
Q ss_pred hhheeEEccCCccccc-cHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccc-cCCCCCCChHHHHHHHHH
Q 000830 457 RQQIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQV-GERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGqkqriaiA 532 (1265)
|++||||+|+..|++. |++|||.++.. .....+..++ .. +....+ |+.... ...+.+||||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~--~~---~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA--AE---ELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH--HH---HHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 5679999999999987 99999996421 1111111111 11 111111 222122 255778999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEE
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIV 597 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 597 (1265)
|||+.+|+|++.||||++||.++.+.|++.+.++. .|+|+|+|||+......|||++.|++|++.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999884 389999999999999999999999999954
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=394.21 Aligned_cols=227 Identities=47% Similarity=0.787 Sum_probs=208.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
+.|+++|++|+|++ ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999963 2358999999999999999999999999999999999999999999999999988888888999
Q ss_pred eeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000830 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1265)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 539 (1265)
++|++|++.+|++|++||+.++.+....+++.++++..++.+++..+|.|+++..+....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999886655566777777778888899999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 540 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++.|+.+++..+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999988999999999999999988777543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=413.60 Aligned_cols=223 Identities=31% Similarity=0.577 Sum_probs=186.1
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH---Hh
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1265)
|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999998887654 57
Q ss_pred hheeEEccCCcccc-ccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
++|+||||++.+|+ .|++||+.++.. ..+.++..+ +..++.+. + |+.......+.+||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~--~v~e~l~~---v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR--KVTELLAL---V--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH--HHHHHHHH---c--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999996 599999998642 122222211 11111121 1 23333455667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCch
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1265)
|+.+|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|++++++..+..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCc
Confidence 9999999999999999999999999999998753 8999999999999976 999999999999999999999876443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=396.07 Aligned_cols=227 Identities=68% Similarity=1.030 Sum_probs=206.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++|++++|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533356999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000830 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1265)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 541 (1265)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987655555666666777778888899999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 542 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887778999999999999988999999999999999998888765
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=374.07 Aligned_cols=226 Identities=32% Similarity=0.501 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCC-hHHHhh
Q 000830 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQ 458 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~r~ 458 (1265)
.++++|+++.|+... -.++|+||||+|.+||++||||+||||||||+++|+|+.+|++|+|.++|.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997432 125899999999999999999999999999999999999999999999998775543 346778
Q ss_pred heeEEccCCc--cccc-cHHHHhccCCCC----CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 459 QIGLVNQEPA--LFAT-TIRENILYGKDD----ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 459 ~i~~v~Q~~~--lf~~-ti~~ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
.|.+|+|||. |-+- ||++-|.-+... ....++.++++..+ ||.. ....++.+|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~Vg-------L~~~---~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVG-------LPPS---FLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcC-------CCHH---HHhcCchhcChhHHHHHHH
Confidence 8999999995 3333 888777543221 12233444444443 3332 2445677899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
||||.-+|++||||||||+||+..++.|++.+.++.+ +.|.|+|||+++.+.+ ||||+||++|+|+|.++-+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999998875 5699999999999988 999999999999999999999877
Q ss_pred CchHHHHH
Q 000830 609 PNSAYAAL 616 (1265)
Q Consensus 609 ~~~~~~~~ 616 (1265)
+...|.+.
T Consensus 233 ~~h~ytr~ 240 (252)
T COG1124 233 PSHPYTRE 240 (252)
T ss_pred CccHHHHH
Confidence 55666543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=387.39 Aligned_cols=213 Identities=36% Similarity=0.568 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.++++|++|+|+ +.++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.|+.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999997 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-CCcccHHHHhccCCCC-------C---CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1097 ALVQQEPA-LFATSIYENILYGKDG-------A---SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1097 ~~VpQdp~-LF~gTIreNl~~g~~~-------~---sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
+||||++. -|.-|++|=+.+|+-. . +.+.+.+|++..++.++.++. + ..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence 99999964 5667999999888421 1 223578889999998886542 2 35999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhh
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIK-NADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
.|||||.++|+||+||||||+||...+-.+++.+++..+ ++|+|+|.|+++... .||++++|++|+++..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999999873 689999999998865 59999999999999999999998
Q ss_pred h
Q 000830 1243 E 1243 (1265)
Q Consensus 1243 ~ 1243 (1265)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 6
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=401.00 Aligned_cols=218 Identities=37% Similarity=0.599 Sum_probs=197.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|.+. .+++|+||+|+.||.++|+|||||||||++++|.|+.+|++|+|.|||.|+.++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 1899999999999999999999999999999999999999999999999999998876 799
Q ss_pred EEEecCCCCCcc-cHHHHhccCCCC------CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKDG------ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~~------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
++|+|+..||.- ||+|||.|+... .-++++.++++..++..++++.| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999975 999999998432 22567888888988888887776 579999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCC
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1246 (1265)
||+++|++++||||.|+||++....+...|+++.+ +.|+|.|||+...++. +|||+||++|+|.+.|+|.|+.+++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999988754 5799999999999876 99999999999999999999998777
Q ss_pred cHHH
Q 000830 1247 GAYF 1250 (1265)
Q Consensus 1247 g~f~ 1250 (1265)
..|-
T Consensus 227 n~fV 230 (338)
T COG3839 227 NLFV 230 (338)
T ss_pred chhh
Confidence 6664
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=368.52 Aligned_cols=225 Identities=36% Similarity=0.591 Sum_probs=194.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHH---HH
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK---SL 1092 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~l 1092 (1265)
..|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 36999999999964 4699999999999999999999999999999999999999999999999999988754 56
Q ss_pred hcccEEEecCCCCCcc-cHHHHhccCCC---CCCHHHHH----HHHHHhchHHH-HHhCCCCccccccCCCCCCChhHHH
Q 000830 1093 RKHIALVQQEPALFAT-SIYENILYGKD---GASEGEVI----EAAKLANAHSF-ISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1093 R~~i~~VpQdp~LF~g-TIreNl~~g~~---~~sd~ei~----~al~~a~l~~~-i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
|+++|+++|+..||+. ||+||+.+.-. ..+++++. ..++.+|+..- .+.+| +.||||.+.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 9999999999999976 99999988532 33444433 33455555554 33333 579999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSS 1240 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1240 (1265)
|+|||||+.-+|+||++|||||+|||-+...+-+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|+..|+++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988764 7899999999999987 89999999999999999999
Q ss_pred hhhcCCcHHHHHHH
Q 000830 1241 LVENEDGAYFKLIN 1254 (1265)
Q Consensus 1241 Ll~~~~g~f~~l~~ 1254 (1265)
|.+..+-..++.++
T Consensus 233 l~~sd~P~v~qf~~ 246 (263)
T COG1127 233 LLASDDPWVRQFFN 246 (263)
T ss_pred HHhCCCHHHHHHhc
Confidence 99865555555554
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=388.55 Aligned_cols=220 Identities=44% Similarity=0.767 Sum_probs=202.9
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
|.|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999642 2458999999999999999999999999999999999999999999999999988887788899
Q ss_pred cEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000830 1096 IALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNP 1175 (1265)
Q Consensus 1096 i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p 1175 (1265)
++|+||+|.+|..|++||+.++....+.+++.++++..++.+..+.+|.|++|.+.+...+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998765444566788889999999999999999999999989999999999999999999999
Q ss_pred CEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEec
Q 000830 1176 EILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1176 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~G 1236 (1265)
++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999987678999999999988779999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=387.29 Aligned_cols=220 Identities=35% Similarity=0.551 Sum_probs=203.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
+.++++|++++|+.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999743 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred eeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000830 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1265)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 539 (1265)
++|++|++.+|+.|++||+.+... ...+++.++++..++.+++..+|.|+++..++.+.+||||||||++|||||+.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987543 4567788888888888999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeC
Q 000830 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 540 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 601 (1265)
+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=385.15 Aligned_cols=215 Identities=39% Similarity=0.664 Sum_probs=195.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccC-CCCHHHHhcc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIK-RLNLKSLRKH 1095 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~-~~~l~~lR~~ 1095 (1265)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred cEEEecCC--CCCcccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1096 IALVQQEP--ALFATSIYENILYGKD--GASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1096 i~~VpQdp--~LF~gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
+|+|+|+| .+|..||.+.++||.. ..+.+| +.++++.+++.++.+.. ..+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHh
Confidence 99999999 7999999999999843 344444 56777777777764443 35799999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCC--ceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK--RTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~--~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
|.+|..+|++||||||||+||+...+.+.+.++++.++ +|+|+|||+++.+.. |||++||++|+++.+|+|+++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999999998754 799999999999988 999999999999999999999874
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=362.74 Aligned_cols=474 Identities=21% Similarity=0.264 Sum_probs=356.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhHHHHHHHhhHHHHHHHHHHHHHH
Q 000830 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTI 820 (1265)
Q Consensus 741 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~ 820 (1265)
...++++.++..+.+.+........+++...++|+++.++++..|+.-+++ -+.++++.++++|+.++. +-...++.
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhHH
Confidence 334455555556666777778889999999999999999999999999997 789999999999999998 66677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhccHHH
Q 000830 821 LIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDK 900 (1265)
Q Consensus 821 ~i~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~ 900 (1265)
+.+....+++++..+.++++++.+++...+.+.+...++......+.....++.......+.+..++|.+..+...-..+
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 99999999999999999999998887777777666666665555555555666677778888999999999887653332
Q ss_pred H--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 901 V--LELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA 978 (1265)
Q Consensus 901 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1265)
. .+.|...-+...+...+...........++.+.+...+..+|+..... +.+........+.+.+...++.+...
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHHh
Confidence 2 222322222222222222222223334555566666666666655442 22222333344455667778888899
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCCcccCCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCC
Q 000830 979 LVPDLLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSG 1058 (1265)
Q Consensus 979 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSG 1058 (1265)
..|.+..+.++.+++.++...++......+.+.|. -..|+++||.|+|+.. .--+..||++|++||.|=|+|.||||
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsG 361 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSG 361 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCc
Confidence 99999999999999988765433322211222222 2469999999999743 13478899999999999999999999
Q ss_pred hHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcccHHHHhccCCCC-CCHHHHHHHHHHhchHH
Q 000830 1059 KSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDG-ASEGEVIEAAKLANAHS 1137 (1265)
Q Consensus 1059 KSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~-~sd~ei~~al~~a~l~~ 1137 (1265)
|||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-+||+.++ |.+. ++++.+..-++...+..
T Consensus 362 KST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 362 KSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred HHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998764 2222 67776665555444332
Q ss_pred HHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCc
Q 000830 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRL 1215 (1265)
Q Consensus 1138 ~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl 1215 (1265)
.. ++.+|-=+ -..||-|||.|+|+--|++.+.||++|||=-+--||.=.+...+.+--.. .|||++.|||+-
T Consensus 436 kt-sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 436 KT-SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred hh-cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 22 12222111 14699999999999999999999999999999999999998888775543 489999999999
Q ss_pred hhhhccCEEEEEeCCEEEEe
Q 000830 1216 STIKNADQISVIESGKIIEQ 1235 (1265)
Q Consensus 1216 ~ti~~~DrI~vl~~G~Ive~ 1235 (1265)
.-...|||++.|++|+++|.
T Consensus 510 ~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 510 HYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhhhHHHHHHHhcCceeec
Confidence 99999999999999999985
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=403.79 Aligned_cols=221 Identities=29% Similarity=0.499 Sum_probs=188.5
Q ss_pred ccEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCC------
Q 000830 1016 GTIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL------ 1087 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~------ 1087 (1265)
..|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3699999999997421 23689999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcccEEEecCC--CCCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhCCCCcc-ccccC
Q 000830 1088 ----------NLKSLRKHIALVQQEP--ALFATSIYENILYGKD--GASEGEVIEAAKLANAHSFISALPEGYS-TKVGE 1152 (1265)
Q Consensus 1088 ----------~l~~lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge 1152 (1265)
+...+|++++||+|+| .+|+.|++||+.++.. ..++++..+ . ..++++.+ |++ .....
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3567899999999998 6999999999987632 234433322 1 22444444 554 45677
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhh-ccCEEEEEeCC
Q 000830 1153 RGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIK-NADQISVIESG 1230 (1265)
Q Consensus 1153 ~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~DrI~vl~~G 1230 (1265)
.+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 788999999999999999999999999999999999999999999998864 5789999999999875 59999999999
Q ss_pred EEEEecChhhhhh
Q 000830 1231 KIIEQGTHSSLVE 1243 (1265)
Q Consensus 1231 ~Ive~Gt~~eLl~ 1243 (1265)
++++.|+|+++.+
T Consensus 253 ~i~~~g~~~~~~~ 265 (320)
T PRK13631 253 KILKTGTPYEIFT 265 (320)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999998865
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=385.05 Aligned_cols=215 Identities=37% Similarity=0.618 Sum_probs=190.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCC-CCChHHHhhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK-GLDLKWLRQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 459 (1265)
.++++|++|+|+++ .++|+|+||+|++|+.++|+|+||||||||+++|.|+++|++|+|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 57999999999999999999999999999999999999999999999999988 4788999999
Q ss_pred eeEEccCC--ccccccHHHHhccCCCCC--CHHHH----HHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 460 IGLVNQEP--ALFATTIRENILYGKDDA--TMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 460 i~~v~Q~~--~lf~~ti~~ni~~~~~~~--~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
+|||+|+| .+|..||.|.++||..+. +.+++ .++++..++.+ .......+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-----------~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-----------LLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-----------hccCCccccCCcceeeHHh
Confidence 99999999 799999999999997543 33343 33344443332 2445667899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|.+|+.+|++||||||||+||+...+.+.+.++++.+ |+|+|++||+++.+.. ||++++|++|+++.+|++.++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 5899999999999987 999999999999999999888764
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=365.61 Aligned_cols=222 Identities=35% Similarity=0.571 Sum_probs=195.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCC---HHHHh
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN---LKSLR 1093 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~lR 1093 (1265)
.|+++||+.+||+ ...+|+||||+|++||.|||+||||||||||+++|.|+.+|++|+|.++|.++..+. +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 457999999999999999999999999999999999999999999999999998887 67789
Q ss_pred cccEEEecCCCCCcc-cHHHHhccCCCC-----------CC---HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCC
Q 000830 1094 KHIALVQQEPALFAT-SIYENILYGKDG-----------AS---EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLS 1158 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~g-TIreNl~~g~~~-----------~s---d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1158 (1265)
++||+|+|++.|-.. |+.+|+..|+-. .+ .....+|++++++.++.-+ +..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence 999999999998865 899999876421 22 2456788888888776543 446899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 000830 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQ 1235 (1265)
Q Consensus 1159 gGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~ 1235 (1265)
|||+||++|||||..+|+|+|-|||+|+|||++.+.|++.|++.. .|.|+|+.-|.++..+. ||||+-|++|+|+-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999875 47899999999999987 999999999999999
Q ss_pred cChhhhhhcCCcHHHHHHH
Q 000830 1236 GTHSSLVENEDGAYFKLIN 1254 (1265)
Q Consensus 1236 Gt~~eLl~~~~g~f~~l~~ 1254 (1265)
|+++||-+ ..+...|.
T Consensus 230 g~~~el~~---~~~~~iYg 245 (258)
T COG3638 230 GPASELTD---EALDEIYG 245 (258)
T ss_pred CChhhhhH---HHHHHHhc
Confidence 99999643 34444444
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=378.18 Aligned_cols=210 Identities=30% Similarity=0.551 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+|+|+|+.+|.+|+|.++|.+.+.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999743 49999999999999999999999999999999999999999999999987765432 4679
Q ss_pred eEEccCC---ccccccHHHHhccCCCCC----------CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHH
Q 000830 461 GLVNQEP---ALFATTIRENILYGKDDA----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1265)
Q Consensus 461 ~~v~Q~~---~lf~~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1265)
|||||.. |-|+-||+|-+.+|+... +.+++.+|++..++.++. +..+ .+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i----~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQI----GELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcc----cccCcHHHH
Confidence 9999964 678999999999985322 136778888888766543 2234 469999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 528 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
|+.|||||+++|++|+|||||+++|+.++..|.+.|+++++ |+||++|||+++.+.. +|+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999999875 9999999999999865 9999999 5678899999998
Q ss_pred ccC
Q 000830 606 ISN 608 (1265)
Q Consensus 606 ~~~ 608 (1265)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=388.12 Aligned_cols=219 Identities=53% Similarity=0.841 Sum_probs=200.6
Q ss_pred CcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHh
Q 000830 1014 VEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR 1093 (1265)
Q Consensus 1014 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 1093 (1265)
..|.|+++|++++|+++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999754234689999999999999999999999999999999999999999999999999888878888
Q ss_pred cccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000830 1094 KHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLK 1173 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr 1173 (1265)
++++|+||+|.+|.+|++||+.++......+++++..+..++.++++.+|.|+++.+.+...+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988655444556666667778899999999999999999999999999999999999999
Q ss_pred CCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEE
Q 000830 1174 NPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKI 1232 (1265)
Q Consensus 1174 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~I 1232 (1265)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998777899999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=352.65 Aligned_cols=208 Identities=33% Similarity=0.542 Sum_probs=187.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHH---HHhc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK---SLRK 1094 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR~ 1094 (1265)
|+|+||+.+|+.. .++|+||||+|++||.+-++|||||||||++++|+|...|++|+|.++|.|++.+.-+ .||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999865 5699999999999999999999999999999999999999999999999999887655 4899
Q ss_pred ccEEEecCCCCC-cccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1095 HIALVQQEPALF-ATSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1095 ~i~~VpQdp~LF-~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
+||+|+||.-|. +-|+.||+++... ..+ .+.+.++++.+|+.+-...||. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 999999999876 5699999998632 222 3567899999999999999984 699999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~ 1238 (1265)
|||++.+|++||-||||-+|||++...|++.+.+.- .|.||++.||+.+.+.. --|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999998875 48899999999999988 567999999999876544
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=376.00 Aligned_cols=218 Identities=31% Similarity=0.539 Sum_probs=191.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++|++|+|.++ +||+||||+|++|+++||+||||||||||+++++|+.+|.+|+|.++|.++++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999743 49999999999999999999999999999999999999999999999998876533 5789
Q ss_pred EEEecCC---CCCcccHHHHhccCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1097 ALVQQEP---ALFATSIYENILYGKDG----------ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1097 ~~VpQdp---~LF~gTIreNl~~g~~~----------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
|||||.. .-|.-||+|=+.+|... .+.+++.+|++.+++.++.. .++|+ |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Ccccc----cCcHHHH
Confidence 9999955 45788999999887422 12488999999999998854 35664 9999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
|+.|||||+.+|++|+|||||+++|+.++..+.+.|+++.+ ||||++|+|+++.+.. ||+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999999875 8999999999999987 9999999 5688999999999
Q ss_pred hhcCCcHHHHHHH
Q 000830 1242 VENEDGAYFKLIN 1254 (1265)
Q Consensus 1242 l~~~~g~f~~l~~ 1254 (1265)
+. ...+.+.+.
T Consensus 226 ~~--~~~l~~~~g 236 (254)
T COG1121 226 LT--EENLEKAFG 236 (254)
T ss_pred cC--HHHHHHHhC
Confidence 86 344555544
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=383.45 Aligned_cols=219 Identities=43% Similarity=0.726 Sum_probs=199.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
+++++|++++|++. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 24589999999999999999999999999999999999999999999999998877777788899
Q ss_pred eEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000830 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1265)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~ 540 (1265)
+|++|++.+|+.|++||+.++.+....+++.+.++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999988755445566777788888888888999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEee
Q 000830 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 541 illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 600 (1265)
+|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886668999999999988779999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=345.90 Aligned_cols=210 Identities=36% Similarity=0.583 Sum_probs=189.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|.+++|.|+|..-+ -.++++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999997432 478999999999999999999999999999999999999999999999877664 46799
Q ss_pred EEecCCCCCcc-cHHHHhccCC-CC-----CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGK-DG-----ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~-~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
+++||..||.- ||++|+.+|. |. ...+.+..++..+|+.+|.++||. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999964 9999999984 32 234678999999999999999984 699999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcC
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~ 1245 (1265)
|+|+.+||+||||.|+|||.-...+...+.+... +.|+++|||.++.++. +|+++++++|||++.|+-+++++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999999999998888764 5799999999999876 9999999999999999999998743
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=370.87 Aligned_cols=197 Identities=37% Similarity=0.575 Sum_probs=176.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.+++++|+.+|++ ..||+|+||+|++||+|+|+||||||||||++++.|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999974 5699999999999999999999999999999999999999999999999988543 4579
Q ss_pred EEEecCCCCCcc-cHHHHhccCCCCC------CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKDGA------SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~~~------sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
+||+|++.||.- |+++|+.++.... ..+...+.++.+|+.+|-+..| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 999999999986 9999999875321 2346788889999999888777 479999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeC--CEE
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIES--GKI 1232 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~--G~I 1232 (1265)
||+.+|+||+||||.+|||+.|...+|+.+.+..+ ++||++|||++++... +|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 99999999999999999999999999999988764 5899999999999765 999999999 555
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=389.97 Aligned_cols=217 Identities=38% Similarity=0.586 Sum_probs=185.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCH---HHHhc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL---KSLRK 1094 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l---~~lR~ 1094 (1265)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 358999999999999999999999999999999999999999999999999987764 56789
Q ss_pred ccEEEecCCCCCcc-cHHHHhccCCC---CCCHH----HHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000830 1095 HIALVQQEPALFAT-SIYENILYGKD---GASEG----EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1095 ~i~~VpQdp~LF~g-TIreNl~~g~~---~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrla 1166 (1265)
+++||||++.+|.. |++||+.++.. ..+.+ ++.++++..++.++. .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 99999999999986 99999987521 12332 344445555443332 2333579999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999886
Q ss_pred cCCcHH
Q 000830 1244 NEDGAY 1249 (1265)
Q Consensus 1244 ~~~g~f 1249 (1265)
....|
T Consensus 227 -~~~~~ 231 (235)
T cd03261 227 -SDDPL 231 (235)
T ss_pred -CCChh
Confidence 34444
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=388.72 Aligned_cols=212 Identities=37% Similarity=0.587 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccC-----CCCCcEEEECCcccCCCC--HH
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY-----DPTAGKVMVDGIDIKRLN--LK 1090 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~-----~p~~G~I~idG~di~~~~--l~ 1090 (1265)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35899999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhcccEEEecCCCCCcccHHHHhccCCCC---CC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1091 SLRKHIALVQQEPALFATSIYENILYGKDG---AS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1091 ~lR~~i~~VpQdp~LF~gTIreNl~~g~~~---~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
.+|++++|+||++.+|..|++||+.++... .. ++++.++++..++.+.....++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999875321 11 2345666666666554433221 4679999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
|++|||||+++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999998766899999999999875 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=402.01 Aligned_cols=222 Identities=27% Similarity=0.462 Sum_probs=187.7
Q ss_pred ccEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCC------
Q 000830 380 GHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL------ 451 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~------ 451 (1265)
..|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------ChHHHhhheeEEccCC--ccccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCccccc-ccccC
Q 000830 452 ----------DLKWLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGE 516 (1265)
Q Consensus 452 ----------~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~ 516 (1265)
....+|++|+||+|+| .+|+.||+|||.++.. ..+.++..+ . +.+.+..+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3457889999999998 7999999999998742 223333221 1 12333333 343 45677
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCC
Q 000830 517 RGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGR 594 (1265)
Q Consensus 517 ~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~~l~~G 594 (1265)
.+.+||||||||++|||||+++|+|||||||||+||+.++..+.+.|.++. +|+|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998874 5899999999999875 59999999999
Q ss_pred EEEEeeCcchhccC
Q 000830 595 KIVKTGSHEELISN 608 (1265)
Q Consensus 595 ~i~~~g~~~~l~~~ 608 (1265)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998765
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=367.72 Aligned_cols=207 Identities=39% Similarity=0.563 Sum_probs=174.4
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH---H-
Q 000830 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS---L- 1092 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---l- 1092 (1265)
++++||+..|..... ..+|+++||+|++||.|||+||||||||||+++|.++-.|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999964322 46899999999999999999999999999999999999999999999999999988433 3
Q ss_pred hcccEEEecCCCCCcc-cHHHHhccCC--CCCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1093 RKHIALVQQEPALFAT-SIYENILYGK--DGAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1093 R~~i~~VpQdp~LF~g-TIreNl~~g~--~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
|++||+|+|+..|++. |++||+.++. ...+ .+...+.++.+++.+... .....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 5679999999998865 9999998531 1112 334445555556554433 123457999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEEEE
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKIIE 1234 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive 1234 (1265)
||||||+.+|+|++.||||.+||++|.+.|.+.+++..+ ++|+|+|||+......|||++.|.||++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999853 689999999999999999999999999543
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=383.54 Aligned_cols=220 Identities=50% Similarity=0.837 Sum_probs=197.6
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH
Q 000830 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1265)
Q Consensus 377 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1265)
...+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34567999999999975333469999999999999999999999999999999999999999999999999887777778
Q ss_pred hhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
++.++|++|++.+|+.|++||+.++.......++.+.+....+.+++..+|.|+++.+.+++.+||||||||++|||||+
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999876544445555555556677889999989999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEE
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i 596 (1265)
++|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999988778999999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=375.98 Aligned_cols=222 Identities=33% Similarity=0.529 Sum_probs=180.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCe---eCCCCChHHHh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN---NIKGLDLKWLR 457 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~---~~~~~~~~~~r 457 (1265)
.|+++|+++.|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||+ |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 4788999999974 45899999999999999999999999999999999999999999999999 55543 3334
Q ss_pred hheeEEccCCccccc-cHHHHhccCCCCC--CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 458 QQIGLVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
++||+|+|+..||.. ||+|||+||.+-. ...+.....+..++.+.+ + ++-.-...+.+||||||||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lv-q----L~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLV-Q----LEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHh-c----ccchhhcCchhcChHHHHHHHHHHH
Confidence 679999999999975 9999999997311 111111112222222211 1 2222345678999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCch
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1265)
|..+|++||||||+++||++-.+.+.+.|+++.+ |.|+++|||+.+++.. ||||++|++|+|...|+++|....|+.
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 9999999999999999999999999999988753 8999999999998765 999999999999999999999877654
Q ss_pred H
Q 000830 612 A 612 (1265)
Q Consensus 612 ~ 612 (1265)
.
T Consensus 232 ~ 232 (345)
T COG1118 232 R 232 (345)
T ss_pred c
Confidence 3
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=388.46 Aligned_cols=223 Identities=35% Similarity=0.529 Sum_probs=192.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCcEEEECCcccCCCCHHHHh
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD---PTAGKVMVDGIDIKRLNLKSLR 1093 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~~~l~~lR 1093 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 358999999999999999999999999999999999985 6899999999999988888889
Q ss_pred cccEEEecCCCCCcccHHHHhccCCC--C------CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1094 KHIALVQQEPALFATSIYENILYGKD--G------ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~gTIreNl~~g~~--~------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
++++|+||+|.+|..|++||+.++.. . ..++++.++++..++.+++.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 99999999999999999999977521 1 112345666666666554432 23456678999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
+|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999998778999999999999875 999999999999999999999864
Q ss_pred CCcHH
Q 000830 1245 EDGAY 1249 (1265)
Q Consensus 1245 ~~g~f 1249 (1265)
+...+
T Consensus 232 ~~~~~ 236 (246)
T PRK14269 232 PKQEK 236 (246)
T ss_pred CCcHH
Confidence 43333
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=393.51 Aligned_cols=217 Identities=31% Similarity=0.545 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742224589999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCC--CCCcccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1097 ALVQQEP--ALFATSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1097 ~~VpQdp--~LF~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
+||||+| .++..|++|||.++.. ..+ ++.+.++++.+++.++.+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 3667899999987632 123 245677777777766654433 57999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhc
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998763 7899999999999988999999999999999999998763
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=394.98 Aligned_cols=221 Identities=34% Similarity=0.557 Sum_probs=199.0
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
..|+++||+.+|. +..+++|+||+|++||.+.++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999997 45799999999999999999999999999999999999999999999999999998876 479
Q ss_pred cEEEecCCCCCc-ccHHHHhccCCC---CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1096 IALVQQEPALFA-TSIYENILYGKD---GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1096 i~~VpQdp~LF~-gTIreNl~~g~~---~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
|++|+|+..||. -||+||+.||.. ...+ +.+.++++.+++.++-.+.| .+|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 999999999995 599999999853 1222 36789999999998877765 5799999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
||||..+|++||||||-||||.+-...++.-+++..+ |.|.|+|||+-+.... +|||+||++|+|...|+|+|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999999999999988764 7899999999988654 999999999999999999999998
Q ss_pred CCcHHHHH
Q 000830 1245 EDGAYFKL 1252 (1265)
Q Consensus 1245 ~~g~f~~l 1252 (1265)
+...|-.-
T Consensus 228 P~~~fVA~ 235 (352)
T COG3842 228 PATRFVAD 235 (352)
T ss_pred cchHHHHH
Confidence 77776543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=375.08 Aligned_cols=206 Identities=34% Similarity=0.618 Sum_probs=184.2
Q ss_pred CCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHH
Q 000830 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL 1092 (1265)
Q Consensus 1013 ~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l 1092 (1265)
+..+.|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+
T Consensus 2 ~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 2 PEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 345679999999999742 2368999999999999999999999999999999999999999999999999988888889
Q ss_pred hcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000830 1093 RKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172 (1265)
Q Consensus 1093 R~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALl 1172 (1265)
|++++||||+|.+|++|++||+.+.. ..+++++.++++ +.+....|||||+||++||||++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALL 141 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccC-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999997643 234455444433 23456789999999999999999
Q ss_pred cCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1173 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~ 1238 (1265)
++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999998778999999999999988999999999999998874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=384.05 Aligned_cols=217 Identities=35% Similarity=0.548 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh---HHHhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1265)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 359999999999999999999999999999999999999999999999999877664 56788
Q ss_pred heeEEccCCccccc-cHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 459 QIGLVNQEPALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
.|+||+|++.+|+. |++||+.++.. ..+.++..+.+ .+.+..+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV-----LEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHH-----HHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999986 99999987632 12222222111 1112222 23333445567899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999988753 7999999999999876 999999999999999999988754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=401.77 Aligned_cols=219 Identities=33% Similarity=0.542 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 24689999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEecCCCCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALFA-TSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
+||||++.+|. .|++||+.++.. ..+ .+++.++++..++.++..+.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998642 122 245667777778777666554 479999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCC
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1246 (1265)
||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999998764 6899999999998865 99999999999999999999988666
Q ss_pred cHHH
Q 000830 1247 GAYF 1250 (1265)
Q Consensus 1247 g~f~ 1250 (1265)
..|.
T Consensus 228 ~~~~ 231 (356)
T PRK11650 228 STFV 231 (356)
T ss_pred cHHH
Confidence 5554
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=383.15 Aligned_cols=224 Identities=35% Similarity=0.566 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecCCCCCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000830 1097 ALVQQEPALFATSIYENILYGKD--GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174 (1265)
Q Consensus 1097 ~~VpQdp~LF~gTIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~ 1174 (1265)
+|+||+|.+|..|++||+.++.. ...++++.+.++..++.+ .........||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999987532 112334455555544421 122345568999999999999999999
Q ss_pred CCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCCcHHHH
Q 000830 1175 PEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAYFK 1251 (1265)
Q Consensus 1175 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~ 1251 (1265)
|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..++...|.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 999999999999999999999999998753 7899999999999876 9999999999999999999998754445655
Q ss_pred HH
Q 000830 1252 LI 1253 (1265)
Q Consensus 1252 l~ 1253 (1265)
.+
T Consensus 230 ~~ 231 (241)
T PRK14250 230 LF 231 (241)
T ss_pred HH
Confidence 44
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=400.84 Aligned_cols=219 Identities=32% Similarity=0.548 Sum_probs=191.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .++++
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 6999999999963 458999999999999999999999999999999999999999999999999987664 46789
Q ss_pred EEEecCCCCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
+||+|++.+|.. |++||+.++.. ..+ ++++.++++..++.++.++. ...||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999975 99999998632 122 34566777777776554443 3579999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCC
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1246 (1265)
||+++|++||||||||+||+.+...+++.|++..+ ++|+|+|||+++.+.. ||+|+||++|+|++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998864 7899999999999865 99999999999999999999988666
Q ss_pred cHHHH
Q 000830 1247 GAYFK 1251 (1265)
Q Consensus 1247 g~f~~ 1251 (1265)
..|..
T Consensus 230 ~~~~a 234 (351)
T PRK11432 230 SRFMA 234 (351)
T ss_pred chHHH
Confidence 55543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=401.10 Aligned_cols=223 Identities=34% Similarity=0.578 Sum_probs=188.2
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH---Hh
Q 000830 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS---LR 1093 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 1093 (1265)
|+++||+++|+... +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997321 346999999999999999999999999999999999999999999999999998877654 57
Q ss_pred cccEEEecCCCCCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000830 1094 KHIALVQQEPALFA-TSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~-gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrla 1166 (1265)
++++||||++.+|. .|++||+.++.. ..+. +++.+.++..++.++ ......+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 89999999999986 699999987521 2222 234444444444333 33344679999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||||+++|+||||||||++||+.+...+++.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999987
Q ss_pred cCCcHHHH
Q 000830 1244 NEDGAYFK 1251 (1265)
Q Consensus 1244 ~~~g~f~~ 1251 (1265)
++...+.+
T Consensus 231 ~~~~~~~~ 238 (343)
T PRK11153 231 HPKHPLTR 238 (343)
T ss_pred CCCcHHHH
Confidence 54444443
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=401.75 Aligned_cols=218 Identities=30% Similarity=0.506 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24599999999999999999999999999999999999999999999999999877654 4689
Q ss_pred eEEccCCccccc-cHHHHhccCCCC--CCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDD--ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
|||+|++.+|+. ||+|||.|+... .+.. ++.++++..++ +........+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILEL-----------EPLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC-----------hhHhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999987532 1222 23333333333 33345556789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
||+++|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999988754 7999999999998865 99999999999999999999987654
Q ss_pred hHH
Q 000830 611 SAY 613 (1265)
Q Consensus 611 ~~~ 613 (1265)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 333
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=381.45 Aligned_cols=210 Identities=37% Similarity=0.617 Sum_probs=177.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhcc-----CCCcceEEECCeeCCCCC--hH
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY-----EPLSGEILLDGNNIKGLD--LK 454 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~~g~~~~~~~--~~ 454 (1265)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999987766 56
Q ss_pred HHhhheeEEccCCccccccHHHHhccCCCCC---C----HHHHHHHHHHhcHHHHHhcCcccccccccCC--CCCCChHH
Q 000830 455 WLRQQIGLVNQEPALFATTIRENILYGKDDA---T----MEEITRAAKLSEAMSFISNLPERFETQVGER--GIQLSGGQ 525 (1265)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGq 525 (1265)
.+|++++|++|++.+|+.|++||+.++.... . .+++.++++..+ ++...... +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAA-----------LWDEVKDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcC-----------CChHHhccCCcccCCHHH
Confidence 6788999999999999779999998763211 1 112222222222 22222233 47899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcch
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1265)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+.+|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999999999999988655899999999999865 99999999999999998876
Q ss_pred h
Q 000830 605 L 605 (1265)
Q Consensus 605 l 605 (1265)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 4
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=386.30 Aligned_cols=226 Identities=31% Similarity=0.484 Sum_probs=191.6
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCC--CC
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKR--LN 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~ 1088 (1265)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999963 3589999999999999999999999999999999999997 48999999999853 34
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCC--C-CC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKD--G-AS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~-~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
...+|++++|+||++.+|..|++||+.++.. . .+ ++.+.++++.+++.+.+ ++.+++ ...+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHH
Confidence 5668899999999999999999999987531 1 11 23456666666654332 233444 456799999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSS 1240 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1240 (1265)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778899999999999866 99999999999999999999
Q ss_pred hhhcCCcHHHH
Q 000830 1241 LVENEDGAYFK 1251 (1265)
Q Consensus 1241 Ll~~~~g~f~~ 1251 (1265)
+.+++...|.+
T Consensus 236 ~~~~~~~~~~~ 246 (254)
T PRK14273 236 LFFNPKNTKTE 246 (254)
T ss_pred HHhCCCChHHH
Confidence 98755555443
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=400.61 Aligned_cols=217 Identities=32% Similarity=0.518 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .+++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5899999999963 458999999999999999999999999999999999999999999999999987654 35789
Q ss_pred eEEccCCccccc-cHHHHhccCCCC--CCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDD--ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
+||+|++.+|+. ||+|||.|+... ...+ ++.++++..+ +.......+.+||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~g-----------l~~~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVD-----------LAGFEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHHHHHH
Confidence 999999999976 999999997431 1222 2333333333 223345566789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|+|++.|+++++..++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 8999999999999855 99999999999999999999987755
Q ss_pred hHH
Q 000830 611 SAY 613 (1265)
Q Consensus 611 ~~~ 613 (1265)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 433
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=377.10 Aligned_cols=470 Identities=17% Similarity=0.142 Sum_probs=344.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccccChhHH------HHHHHhhHHHHHHHH
Q 000830 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEV------ISAITSDIIVVQDAL 176 (1265)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l------~srl~~D~~~i~~~~ 176 (1265)
....+..++.+..++...+.++......+.-.-+-..+.++.+....-|+.. ..|.+ =.|+..|+...-+..
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhH
Confidence 3334444444444555556666665556666666666777777776333332 33422 379999998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000830 177 SEKVGNFMHYISRFLGGFIIGFARVW---------------QISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAG 241 (1265)
Q Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~~---------------~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1265)
......++.++..++.-.+++..++- .+..++++.+++..++..++++.+.++.-+.++..++.-
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 66666666666655544444432211 223334445555556666788888888888888888888
Q ss_pred HHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH
Q 000830 242 EIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGES 321 (1265)
Q Consensus 242 ~~~~E~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 321 (1265)
..+.-.-++...|-.|+.|+.+.++.++......+...+......-...+......++.++-+..++-....|.++.|.+
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~l 325 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGL 325 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHH
Confidence 88888888999999999999999888877766666555544433333333333333333333344455567888998888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc--c-cccc-cccCCCC---CCCcccEEEEeEEEECCCC
Q 000830 322 FTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDT--M-SKAS-SKTGRKL---DKLSGHIEFKDVSFCYPSR 394 (1265)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~--~-~~~~-~~~~~~~---~~~~~~i~~~~v~f~y~~~ 394 (1265)
+.....+.....+++.+...+..+..-++...|+.++-+.-. + .... ...+... ...+..|+++|++..-|+.
T Consensus 326 mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~ 405 (604)
T COG4178 326 MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC
Confidence 777666666667888888899999999999999998764321 0 0000 0000000 1114679999999998753
Q ss_pred CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccccH
Q 000830 395 PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTI 474 (1265)
Q Consensus 395 ~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 474 (1265)
...+++.||++++||.+-|.||||||||||++.|+|++|--+|+|..-.. ..+-|+||.|++-.||.
T Consensus 406 --~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 406 --QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTL 472 (604)
T ss_pred --CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccH
Confidence 36899999999999999999999999999999999999999999987621 35899999999999999
Q ss_pred HHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCC
Q 000830 475 RENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552 (1265)
Q Consensus 475 ~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD 552 (1265)
||-|+|+... .+++++.+++.++++.++++++.+-.+ =...||||||||+|+||.|+++|++++|||+|||||
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 9999998764 689999999999999999988754222 335699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEe
Q 000830 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (1265)
Q Consensus 553 ~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~ 592 (1265)
+++|..+.+.+++...+.|+|-|+||.......++.+-+.
T Consensus 548 e~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999888999999999998887776655553
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=399.63 Aligned_cols=207 Identities=34% Similarity=0.555 Sum_probs=181.9
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHH----hcccEEEecCCCCCc-
Q 000830 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL----RKHIALVQQEPALFA- 1107 (1265)
Q Consensus 1033 ~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l----R~~i~~VpQdp~LF~- 1107 (1265)
..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|++||.|+...+...+ |++++||||++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000830 1108 TSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181 (1265)
Q Consensus 1108 gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLD 1181 (1265)
.|++||+.++.. ..+ .+++.++++.+++.++..+. ..+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999987532 122 34566677777766554443 4579999999999999999999999999
Q ss_pred cCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCCcHHH
Q 000830 1182 EATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAYF 1250 (1265)
Q Consensus 1182 EaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~ 1250 (1265)
||||+||+.+.+.+++.+.+..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 99999999999999999998753 7899999999998755 999999999999999999999876554444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=399.71 Aligned_cols=218 Identities=33% Similarity=0.499 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999877654 6789
Q ss_pred EEEecCCCCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALFA-TSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
+||||++.+|. .|++||+.++.. ..+ ++.+.++++..++.++. .....+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHHH
Confidence 99999999996 699999998632 122 23445555555554443 3445689999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCC
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1246 (1265)
||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998764 6899999999999865 99999999999999999999998666
Q ss_pred cHHH
Q 000830 1247 GAYF 1250 (1265)
Q Consensus 1247 g~f~ 1250 (1265)
..|.
T Consensus 228 ~~~~ 231 (353)
T TIGR03265 228 TPFV 231 (353)
T ss_pred CHHH
Confidence 5553
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=383.83 Aligned_cols=222 Identities=35% Similarity=0.555 Sum_probs=189.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CcEEEECCcccCCC--CHH
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT-----AGKVMVDGIDIKRL--NLK 1090 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~~--~l~ 1090 (1265)
|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999973 35899999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcccEEEecCCCCCcccHHHHhccCCC--C-CC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1091 SLRKHIALVQQEPALFATSIYENILYGKD--G-AS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1091 ~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~-~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
.+|++++|+||++.+|..|++||+.++.. . .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77899999999999999999999986421 1 12 234555666666653321 2233445689999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777899999999999875 9999999999999999999998
Q ss_pred hcCCcHH
Q 000830 1243 ENEDGAY 1249 (1265)
Q Consensus 1243 ~~~~g~f 1249 (1265)
++....+
T Consensus 232 ~~~~~~~ 238 (247)
T TIGR00972 232 TNPKEKR 238 (247)
T ss_pred hCCCChH
Confidence 6544444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=388.68 Aligned_cols=217 Identities=35% Similarity=0.576 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCC--HHHHh
Q 000830 1018 IELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN--LKSLR 1093 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~--l~~lR 1093 (1265)
|+++||+++|+... ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997422 136999999999999999999999999999999999999999999999999998753 45788
Q ss_pred cccEEEecCC--CCCcccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1094 KHIALVQQEP--ALFATSIYENILYGKD--GASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1094 ~~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
++++||||+| .+|+.|++||+.++.. ..+.++ +.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5788999999987531 234333 44455554442 01223445568999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
+|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998763 7899999999999864 9999999999999999999987
Q ss_pred h
Q 000830 1243 E 1243 (1265)
Q Consensus 1243 ~ 1243 (1265)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=388.37 Aligned_cols=213 Identities=33% Similarity=0.566 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 23589999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecCC--CCCcccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1097 ALVQQEP--ALFATSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1097 ~~VpQdp--~LF~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
+|+||+| .+|..|++||+.++.. ..+ ++++.++++.+++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6888999999987531 122 245667777777766655443 37999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999999875 47899999999999865 9999999999999999987653
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=384.87 Aligned_cols=226 Identities=32% Similarity=0.514 Sum_probs=192.3
Q ss_pred CcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCC--
Q 000830 1014 VEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKR-- 1086 (1265)
Q Consensus 1014 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~-- 1086 (1265)
..+.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++..
T Consensus 10 ~~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 10 APSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CCceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 3567999999999963 358999999999999999999999999999999999986 589999999999863
Q ss_pred CCHHHHhcccEEEecCCCCCcccHHHHhccCCC---CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCCh
Q 000830 1087 LNLKSLRKHIALVQQEPALFATSIYENILYGKD---GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSG 1159 (1265)
Q Consensus 1087 ~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~---~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1159 (1265)
.+...+|++++|+||+|.+|..|+++|+.++.. ..+. ++++++++.+++.+.+. ....+...+|||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 159 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSG 159 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCH
Confidence 456678999999999999999999999987532 1222 34566666666543322 234455678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 000830 1160 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1160 GQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~ 1238 (1265)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999865 999999999999999999
Q ss_pred hhhhhcCCcHH
Q 000830 1239 SSLVENEDGAY 1249 (1265)
Q Consensus 1239 ~eLl~~~~g~f 1249 (1265)
+++.+.....|
T Consensus 240 ~~~~~~~~~~~ 250 (260)
T PRK10744 240 DTIFTKPAKKQ 250 (260)
T ss_pred HHHHhCCCcHH
Confidence 99987443333
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=382.65 Aligned_cols=216 Identities=31% Similarity=0.561 Sum_probs=184.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHH-hccc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL-RKHI 1096 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l-R~~i 1096 (1265)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 358999999999999999999999999999999999999999999999999988776654 6789
Q ss_pred EEEecCCCCCcc-cHHHHhccCCCCC------------CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKDGA------------SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~~~------------sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
+|+||++.+|.+ |++||+.++.... ..++.. ..+.++++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----ERAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----HHHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999987 9999998753211 011111 1223444444 5555556666789999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
|++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999999876 57899999999999976 999999999999999999998
Q ss_pred hh
Q 000830 1242 VE 1243 (1265)
Q Consensus 1242 l~ 1243 (1265)
++
T Consensus 231 ~~ 232 (236)
T cd03219 231 RN 232 (236)
T ss_pred cc
Confidence 75
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=400.09 Aligned_cols=221 Identities=29% Similarity=0.488 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4589999999999999999999999999999999999999999999999999876653 5689
Q ss_pred eEEccCCccccc-cHHHHhccCCCCC--CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
+||+|++.+|+. ||+||+.|+.... +..+..+ .+.+.++.+ |++......+.+||||||||+||||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE-----RVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 9999999875321 1222111 112223333 34445567778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCchHH
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1265)
+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++..++...+
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 9999999999999999999999999988753 8999999999999765 99999999999999999999987755443
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=384.87 Aligned_cols=220 Identities=33% Similarity=0.547 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 1089 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999963 358999999999999999999999999999999999975 589999999999865 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--CC-----CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--GA-----SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|++++|+||++.+|..|++||+.++.. .. .++++.++++.+++.+.+. +.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 678899999999999999999999986421 11 1345566666666654332 223455678999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999999
Q ss_pred hhcCC
Q 000830 1242 VENED 1246 (1265)
Q Consensus 1242 l~~~~ 1246 (1265)
.+...
T Consensus 236 ~~~~~ 240 (253)
T PRK14242 236 FTRPR 240 (253)
T ss_pred HcCCC
Confidence 86443
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=375.93 Aligned_cols=467 Identities=17% Similarity=0.155 Sum_probs=338.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-------cccchhHHHHHHHhhHHHHHHH
Q 000830 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDE-------MDNSSSILASRLESDATLLRTI 813 (1265)
Q Consensus 741 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~-------~~~~~G~i~~r~s~D~~~i~~~ 813 (1265)
..+|.+++.+.++....+.++......++-.-+-+.+.++-+...-.|+.. .+|| =+|+..|+...-+.
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNp----DQRi~eDi~~~t~~ 164 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNP----DQRIQEDIRNFTET 164 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCCh----HHhHHHHHHHHHhh
Confidence 456666666667777777777777777777777777777766666333321 1233 26888999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000830 814 VVDRSTILIQNFGLVTASFVIAFILNW-----------R----ITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKA 878 (1265)
Q Consensus 814 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~----l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1265)
..+....++.++.+++....++.-.+- . +.++++..+++.-.......+.+.+...+..+..+..
T Consensus 165 t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~f 244 (604)
T COG4178 165 TLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADF 244 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 777777777777776666665552221 1 1112222222222222222333333333334444444
Q ss_pred HHHHHHHHhhhHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHH
Q 000830 879 NMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKS 958 (1265)
Q Consensus 879 ~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 958 (1265)
.......-++.+.|-.++-|+...++..+..........+..........+......+...+-+..++-....|.++++.
T Consensus 245 R~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~ 324 (604)
T COG4178 245 RYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGG 324 (604)
T ss_pred HHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHH
Confidence 55666677888899999999877777666666655544444444444444444444455555555666677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cccCCCCccc---CCCcccEEEEeEEEECCC
Q 000830 959 VMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT------QVIGDIGEEL---TNVEGTIELRGVHFSYPS 1029 (1265)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~------~~~~~~~~~~---~~~~g~I~~~~Vsf~Y~~ 1029 (1265)
++.+..++..+..+++......+.+..-.+...|+.++.+... +......... ......|+|+|++..-|+
T Consensus 325 lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~ 404 (604)
T COG4178 325 LMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD 404 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC
Confidence 9999888888888888888888888888888999887753221 1111100000 001467999999999885
Q ss_pred CCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCccc
Q 000830 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATS 1109 (1265)
Q Consensus 1030 ~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gT 1109 (1265)
. .+.+++++|+|+|||.+-|.|+||||||||+++|.|+++-.+|+|..-. -..+-|+||.|++-.||
T Consensus 405 ~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~Gt 471 (604)
T COG4178 405 G--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGT 471 (604)
T ss_pred C--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCcc
Confidence 4 3679999999999999999999999999999999999999999986631 13478999999999999
Q ss_pred HHHHhccCCCC--CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCC
Q 000830 1110 IYENILYGKDG--ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187 (1265)
Q Consensus 1110 IreNl~~g~~~--~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaL 1187 (1265)
+||=|.|+... .+|+|+.+++.++++.++++++.+ ...-..-||+|||||||+||.|+++|++++||||||||
T Consensus 472 Lre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-----~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsAL 546 (604)
T COG4178 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546 (604)
T ss_pred HHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-----cCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhcc
Confidence 99999998643 899999999999999999999742 22245679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeC
Q 000830 1188 DVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIES 1229 (1265)
Q Consensus 1188 D~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~ 1229 (1265)
|+++|..+.+.+++..++.|+|.|+||.......++.+-+++
T Consensus 547 De~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 547 DEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred ChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 999999999999999999999999999888777777665543
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=399.68 Aligned_cols=206 Identities=35% Similarity=0.535 Sum_probs=178.5
Q ss_pred CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH----hhheeEEccCCccccc
Q 000830 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQQIGLVNQEPALFAT 472 (1265)
Q Consensus 397 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~ 472 (1265)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ |++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999988877 7789999999999985
Q ss_pred -cHHHHhccCCCCC--CH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 000830 473 -TIRENILYGKDDA--TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545 (1265)
Q Consensus 473 -ti~~ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlD 545 (1265)
||+|||.++.+.. +. +++.++++.. |++...+..+.+||||||||++|||||+.+|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999874321 12 2233333333 3444566777899999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCchHH
Q 000830 546 EATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1265)
Q Consensus 546 E~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1265)
||||+||+.+...+++.+.++. .++|+|+|||+++++.. ||+|++|++|++++.|++++++.++...|
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999999999998874 38999999999998754 99999999999999999999987654444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=398.55 Aligned_cols=222 Identities=35% Similarity=0.590 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH---Hh
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1265)
|+++|++|+|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999998877644 47
Q ss_pred hheeEEccCCcccc-ccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 458 QQIGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
++|+||+|++.+|+ .|++||+.++.. ..+.++..+ .+.+.+..+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999987 599999987632 122222211 112223322 33444556677899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
|+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 233 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999998753 7999999999999876 99999999999999999999976543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=379.41 Aligned_cols=213 Identities=34% Similarity=0.543 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999964 458999999999999999999999999999999999999999999999999876543 367899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCC--C----CH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000830 1098 LVQQEPALFA-TSIYENILYGKDG--A----SE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1098 ~VpQdp~LF~-gTIreNl~~g~~~--~----sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrla 1166 (1265)
|+||+|.+|. .|++||+.++... . +. +++.++++..++.++ ......+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHH
Confidence 9999999986 5999999875321 1 11 233444555554333 33344679999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||||+.+|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998765 99999999999999999999976
Q ss_pred cCC
Q 000830 1244 NED 1246 (1265)
Q Consensus 1244 ~~~ 1246 (1265)
...
T Consensus 227 ~~~ 229 (239)
T cd03296 227 HPA 229 (239)
T ss_pred CCC
Confidence 433
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=381.70 Aligned_cols=218 Identities=29% Similarity=0.481 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC---CCcceEEECCeeCCCCChHHHh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWLR 457 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~r 457 (1265)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+....|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999973 358999999999999999999999999999999999985 6999999999999888777888
Q ss_pred hheeEEccCCccccccHHHHhccCCCCC----C----HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHH
Q 000830 458 QQIGLVNQEPALFATTIRENILYGKDDA----T----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~~ti~~ni~~~~~~~----~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1265)
++|+|++|++.+|+.|++||+.++.... . .+++.++++..+ ++..+.+...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVG-------LFEEVKDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcC-------CChhhhHHhcCCcccCCHHHHHHH
Confidence 9999999999999999999998763110 0 111222222222 222222345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 530 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988779999999999998865 999999999999999999998764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=387.94 Aligned_cols=217 Identities=29% Similarity=0.516 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.++++||+++|++....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224599999999999999999999999999999999999999999999999999887888888999
Q ss_pred eEEccCCc--cccccHHHHhccCCCC--CCHHH----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 461 GLVNQEPA--LFATTIRENILYGKDD--ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
+||+|+|. ++..||+|||.++... .+.++ +.++++..+ ++........+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVG-----------MQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHHHHHH
Confidence 99999984 5567999999987432 22222 233333333 23334455678999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|||+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 8999999999999878999999999999999999887654
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=381.57 Aligned_cols=222 Identities=27% Similarity=0.503 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH-hhhe
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1265)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 359999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred eEEccCCccccc-cHHHHhccCCCCCCHHHH-------HHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDDATMEEI-------TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
+|++|++.+|++ |++||+.++........+ ........+.+.++.+ |++........+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999987 999999876432110000 0001111223334443 455556777789999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999998875 58999999999999866 999999999999999999887653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=387.44 Aligned_cols=219 Identities=35% Similarity=0.582 Sum_probs=185.7
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCC----CHHH
Q 000830 1018 IELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL----NLKS 1091 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~l~~ 1091 (1265)
|+++||+++|++.+ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 13699999999999999999999999999999999999999999999999999653 3467
Q ss_pred HhcccEEEecCC--CCCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhCCCCccc-cccCCCCCCChhHHHHHH
Q 000830 1092 LRKHIALVQQEP--ALFATSIYENILYGKD--GASEGEVIEAAKLANAHSFISALPEGYST-KVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1092 lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~Gldt-~vge~G~~LSgGQkQrla 1166 (1265)
+|++|+||||+| .+|..|++|||.++.. ..+.++..+. +.+.++.+ |+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 5888999999987532 2333333222 12333333 5653 344567889999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||||+.+|+||||||||++||+.+...+++.|+++. .++|+|+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999875 37899999999999864 99999999999999999999876
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=381.32 Aligned_cols=213 Identities=36% Similarity=0.596 Sum_probs=182.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCC---HHHHhc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN---LKSLRK 1094 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~lR~ 1094 (1265)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 145899999999999999999999999999999999999999999999999998876 456889
Q ss_pred ccEEEecCCCCCc-ccHHHHhccCCCC-----------CC---HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCCh
Q 000830 1095 HIALVQQEPALFA-TSIYENILYGKDG-----------AS---EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSG 1159 (1265)
Q Consensus 1095 ~i~~VpQdp~LF~-gTIreNl~~g~~~-----------~s---d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1159 (1265)
+++|+||++.+|. .|++||+.++... .+ ++++.++++..++ +......+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCCcccCCH
Confidence 9999999999886 6999999764211 11 2233444444443 3334445678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1160 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1160 GQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
|||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 37899999999999985 9999999999999999
Q ss_pred Chhhhhh
Q 000830 1237 THSSLVE 1243 (1265)
Q Consensus 1237 t~~eLl~ 1243 (1265)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9998743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=388.45 Aligned_cols=216 Identities=31% Similarity=0.530 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCCC--cccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCC----CCHHH
Q 000830 1018 IELRGVHFSYPSRPE--VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKR----LNLKS 1091 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----~~l~~ 1091 (1265)
|+++||+|+|+.... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 358999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEecCC--CCCcccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1092 LRKHIALVQQEP--ALFATSIYENILYGKD--GASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1092 lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
+|++++||+|+| .+|..|+.||+.++.. ..+.++ +.++++.+++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 899999999998 7999999999987632 223333 344444444421 1223445689999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998875 47899999999999864 999999999999999999998
Q ss_pred hh
Q 000830 1242 VE 1243 (1265)
Q Consensus 1242 l~ 1243 (1265)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 75
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=396.27 Aligned_cols=218 Identities=32% Similarity=0.531 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.++...+. .|+++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999964 358999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEecCCCCCcc-cHHHHhccCCC------CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKD------GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~------~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
+||||++.+|.. |++||+.++.. ..+ ++++.++++..++.++.++ ....||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 999999999974 99999988632 122 2345556666666544433 3357999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
+|||||+++|++||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+|++.|+++++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998764 6899999999999776 9999999999999999999998
Q ss_pred hcCCcHHH
Q 000830 1243 ENEDGAYF 1250 (1265)
Q Consensus 1243 ~~~~g~f~ 1250 (1265)
+++...|.
T Consensus 226 ~~p~~~~~ 233 (353)
T PRK10851 226 REPATRFV 233 (353)
T ss_pred hCccchHH
Confidence 86555443
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=376.32 Aligned_cols=211 Identities=27% Similarity=0.469 Sum_probs=180.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++||+++|++. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999742 146899999999999999999999999999999999999999999999999987643 56788999
Q ss_pred EEecCCCCC-cccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALF-ATSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF-~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||++.+| ..|+++|+.++.. ..+. +++.++++..++.+.. ++ ...+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NK----RARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hC----hhhhCCHHHHHHHHHHHH
Confidence 999999998 5799999976421 1222 2344555555543332 23 335799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998778999999999999976 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=386.21 Aligned_cols=215 Identities=32% Similarity=0.568 Sum_probs=190.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+++.+
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 24589999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEecCC--CCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1097 ALVQQEP--ALFATSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1097 ~~VpQdp--~LF~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
+|+||+| .+++.|++|||.++.. ..+. +++.++++..++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4667899999987521 1222 34666777777766655544 47999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999998764 789999999999998899999999999999999999876
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=399.11 Aligned_cols=222 Identities=26% Similarity=0.468 Sum_probs=195.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|+++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999963 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHhccCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1097 ALVQQEPAL-FATSIYENILYGKDG----------ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1097 ~~VpQdp~L-F~gTIreNl~~g~~~----------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
+||||++.+ |+.|++||+.++... .+.+.+.++++.+++.++.++ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 678999999876421 123457788888888766533 2357999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
+|||||+++|+||||||||++||+.+...+++.|+++. +++|+|+++|+++.+.. ||||++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999986 47899999999999965 99999999999999999999986
Q ss_pred cCCcHHHHHHH
Q 000830 1244 NEDGAYFKLIN 1254 (1265)
Q Consensus 1244 ~~~g~f~~l~~ 1254 (1265)
.....+++.
T Consensus 229 --~~~l~~~~~ 237 (402)
T PRK09536 229 --ADTLRAAFD 237 (402)
T ss_pred --cHHHHHHhC
Confidence 334555543
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=384.98 Aligned_cols=216 Identities=31% Similarity=0.524 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334689999999999999999999999999999999999999999999999999887888889999
Q ss_pred EEEecCC--CCCcccHHHHhccCCC--CCCHH----HHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1097 ALVQQEP--ALFATSIYENILYGKD--GASEG----EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1097 ~~VpQdp--~LF~gTIreNl~~g~~--~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
+|+||+| .++..|+.|||.++.. ..+++ .+.++++.+++.++... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4778899999986521 23333 34566666666555433 3357999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998864 789999999999998899999999999999999999876
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=388.42 Aligned_cols=221 Identities=25% Similarity=0.499 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCC----CChHH
Q 000830 382 IEFKDVSFCYPSRPD--VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKW 455 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~ 455 (1265)
|+++||+|+|+.... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974221 359999999999999999999999999999999999999999999999999853 33567
Q ss_pred HhhheeEEccCC--ccccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 456 LRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
+|++++||+|+| .+|..|+.||+.|+... .+.++..+ +..++.+.+ .++ +......+.+||||||||++|
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~-~L~---~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK--IAAEKLEMV-GLA---DEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH--HHHHHHHHc-CCC---hhhccCCcccCCHHHHHHHHH
Confidence 888999999998 78989999999987432 22333221 111111211 221 123456678999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEeeCcchhccC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998875 4899999999999885 4999999999999999999998654
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=386.68 Aligned_cols=219 Identities=37% Similarity=0.588 Sum_probs=185.5
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHH----hc
Q 000830 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL----RK 1094 (1265)
Q Consensus 1019 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l----R~ 1094 (1265)
.++||+++|.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 358999999999999999999999999999999999999999999999999988765543 46
Q ss_pred ccEEEecCCCCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1095 HIALVQQEPALFA-TSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1095 ~i~~VpQdp~LF~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
+++|+||++.+|. .|++||+.++.. ... ++++.++++..++.++....| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999885 699999976421 111 234566677777766555443 4799999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998753 7899999999999865 999999999999999999999875
Q ss_pred CCcHHHH
Q 000830 1245 EDGAYFK 1251 (1265)
Q Consensus 1245 ~~g~f~~ 1251 (1265)
....|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 5555554
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=383.60 Aligned_cols=224 Identities=33% Similarity=0.521 Sum_probs=191.1
Q ss_pred CcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCC--
Q 000830 1014 VEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKR-- 1086 (1265)
Q Consensus 1014 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~-- 1086 (1265)
..+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++..
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3568999999999963 3589999999999999999999999999999999999975 89999999999865
Q ss_pred CCHHHHhcccEEEecCCCCCcccHHHHhccCCC--CC--C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCC
Q 000830 1087 LNLKSLRKHIALVQQEPALFATSIYENILYGKD--GA--S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLS 1158 (1265)
Q Consensus 1087 ~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~--s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1158 (1265)
.+...+|++++|+||+|.+|..|++||+.++.. .. + ++++.++++..++.+++. ......+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 345678899999999999998999999986421 11 1 234566666666654332 12344566899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 000830 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237 (1265)
Q Consensus 1159 gGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt 1237 (1265)
||||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998777899999999999965 99999999999999999
Q ss_pred hhhhhhcCCc
Q 000830 1238 HSSLVENEDG 1247 (1265)
Q Consensus 1238 ~~eLl~~~~g 1247 (1265)
+++++.+...
T Consensus 246 ~~~~~~~~~~ 255 (267)
T PRK14235 246 TEKMFTNPDD 255 (267)
T ss_pred HHHHHhCCCC
Confidence 9999864443
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=375.69 Aligned_cols=217 Identities=28% Similarity=0.452 Sum_probs=180.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHH-hccc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL-RKHI 1096 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l-R~~i 1096 (1265)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 358999999999999999999999999999999999999999999999999988776654 6789
Q ss_pred EEEecCCCCCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNP 1175 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p 1175 (1265)
+|+||++.+|.+ |++||+.++.......+..+.+ .+.++.++ +++........+||||||||++|||||+++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL-----ERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHH-----HHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999998753322111111111 11122221 1223334455679999999999999999999
Q ss_pred CEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1176 EILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1176 ~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999876 47899999999999866 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=382.74 Aligned_cols=225 Identities=31% Similarity=0.461 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccC--CCCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIK--RLNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~--~~~l 1089 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 3589999999999999999999999999999999999987 4999999999997 4556
Q ss_pred HHHhcccEEEecCCCCCcc-cHHHHhccCCC--C--CCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChh
Q 000830 1090 KSLRKHIALVQQEPALFAT-SIYENILYGKD--G--ASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~g-TIreNl~~g~~--~--~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1160 (1265)
..+|++++|+||++.+|.+ |++||+.++.. . .+. +++.++++..++.+.+. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788999999999999976 99999976421 1 122 34455565555543322 1234455689999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHS 1239 (1265)
Q Consensus 1161 QkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1239 (1265)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777999999999999876 9999999999999999999
Q ss_pred hhhhcCCcHHHH
Q 000830 1240 SLVENEDGAYFK 1251 (1265)
Q Consensus 1240 eLl~~~~g~f~~ 1251 (1265)
+++++....|.+
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK14267 234 KVFENPEHELTE 245 (253)
T ss_pred HHHhCCCcHHHH
Confidence 998644333433
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=375.64 Aligned_cols=203 Identities=34% Similarity=0.581 Sum_probs=174.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHH---HHhc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK---SLRK 1094 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR~ 1094 (1265)
|+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 23589999999999999999999999999999999999999999999999999776543 4788
Q ss_pred ccEEEecCCCCCc-ccHHHHhccCCC--C----CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1095 HIALVQQEPALFA-TSIYENILYGKD--G----ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1095 ~i~~VpQdp~LF~-gTIreNl~~g~~--~----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
+++|+||+|.+|. .|++||+.++.. . ..++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999886 599999986421 1 12345667777777665544433 4799999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEE
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKI 1232 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~I 1232 (1265)
||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47899999999999976 999999999975
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=377.62 Aligned_cols=215 Identities=36% Similarity=0.586 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHH---HHh
Q 000830 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK---SLR 1093 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR 1093 (1265)
|+++|++++|+++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12689999999999999999999999999999999999999999999999999877654 357
Q ss_pred cccEEEecCCCCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000830 1094 KHIALVQQEPALFA-TSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrla 1166 (1265)
++++|+||+|.+|. .|++||+.++.. ..+ .+++.++++..++.+.. .....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKA-----------DAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hcChhhCCHHHHHHHH
Confidence 89999999999997 699999976421 112 23445555555554443 3344679999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999998875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=386.94 Aligned_cols=220 Identities=30% Similarity=0.527 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCC--hHHHh
Q 000830 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--LKWLR 457 (1265)
Q Consensus 382 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--~~~~r 457 (1265)
|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997422 146999999999999999999999999999999999999999999999999997654 45678
Q ss_pred hheeEEccCC--ccccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCccccc--ccccCCCCCCChHHHHHHHH
Q 000830 458 QQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE--TQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 458 ~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~~~~~g~~LSgGqkqriai 531 (1265)
++||||||+| .+|+.|++|||.++.. ..+.++..+.+. +.+..+ |++ +.....+.+||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVK-----RAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHH-----HHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 5788999999998642 123333322211 112221 222 34566778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEeeCcchhccC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
||||+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998753 899999999999985 5999999999999999999888654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=395.40 Aligned_cols=218 Identities=37% Similarity=0.616 Sum_probs=192.1
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. +++
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999963 3589999999999999999999999999999999999999999999999999877654 578
Q ss_pred cEEEecCCCCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1096 IALVQQEPALFAT-SIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1096 i~~VpQdp~LF~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
++||+|++.||.. |++|||.++.. ..+ ++++.++++..++.++.++.| .+||||||||++||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999965 99999988642 122 235667777777777666555 47999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcC
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~ 1245 (1265)
|||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|+++.+++
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999999764 7899999999999765 9999999999999999999998866
Q ss_pred CcHH
Q 000830 1246 DGAY 1249 (1265)
Q Consensus 1246 ~g~f 1249 (1265)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 6555
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=377.07 Aligned_cols=222 Identities=30% Similarity=0.488 Sum_probs=197.0
Q ss_pred CCCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH
Q 000830 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS 1091 (1265)
Q Consensus 1012 ~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~ 1091 (1265)
+...+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 34 ~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g---------- 98 (282)
T cd03291 34 SSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---------- 98 (282)
T ss_pred CCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------
Confidence 3445679999999952 3589999999999999999999999999999999999999999999998
Q ss_pred HhcccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000830 1092 LRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV 1171 (1265)
Q Consensus 1092 lR~~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARAL 1171 (1265)
+++|+||++.+|++|++||+.++.. ..+.++.++++..++.+.+..+|.++++.+++.+.+||||||||++|||||
T Consensus 99 ---~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL 174 (282)
T cd03291 99 ---RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV 174 (282)
T ss_pred ---EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH
Confidence 4999999999999999999987532 234456677788888999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCcCCCCHHHHHHHHHHH-HHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhcCCcHHH
Q 000830 1172 LKNPEILLLDEATSALDVESERVVQQAL-QRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYF 1250 (1265)
Q Consensus 1172 lr~p~ILlLDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~ 1250 (1265)
+++|++|||||||++||+++...+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+ ....|.
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~-~~~~~~ 253 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS-LRPDFS 253 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh-cchHHH
Confidence 9999999999999999999999888754 55556899999999999998899999999999999999999986 345565
Q ss_pred HHH
Q 000830 1251 KLI 1253 (1265)
Q Consensus 1251 ~l~ 1253 (1265)
+.+
T Consensus 254 ~~~ 256 (282)
T cd03291 254 SKL 256 (282)
T ss_pred HHH
Confidence 554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=397.39 Aligned_cols=218 Identities=33% Similarity=0.527 Sum_probs=185.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999963 3589999999999999999999999999999999999999999999999999876654 467
Q ss_pred eeEEccCCccccc-cHHHHhccCCCC--CCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDD--ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
|+||+|++.||+. ||+|||.|+... .+.. ++.++++..++ +........+||||||||++||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL-----------EEFAQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHHHH
Confidence 9999999999976 999999987531 1222 23333333333 3334455678999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCC
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1265)
|||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|+|++.|++++++.++
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 8999999999998765 9999999999999999999998775
Q ss_pred chHH
Q 000830 610 NSAY 613 (1265)
Q Consensus 610 ~~~~ 613 (1265)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 4333
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=376.28 Aligned_cols=221 Identities=33% Similarity=0.564 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.++++|++|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 3589999999999999999999999999999999999999999999999999877777888899
Q ss_pred eEEccCCccccccHHHHhccCCCCCC--HHHHHHHHHHhcHHHHHhcCccccc-ccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 461 GLVNQEPALFATTIRENILYGKDDAT--MEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
+|++|++.+|+.|++||+.++..... .+++. +.+..+ |++ ......+.+||||||||++||||++.
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVE---------YYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHH---------HHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987642211 11222 222222 222 13345678899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCchHHH
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1265)
+|++|||||||++||+.+...+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 999999999999999999999999998875 38999999999999875 999999999999999999998765443343
Q ss_pred H
Q 000830 615 A 615 (1265)
Q Consensus 615 ~ 615 (1265)
.
T Consensus 229 ~ 229 (241)
T PRK14250 229 K 229 (241)
T ss_pred H
Confidence 3
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=395.96 Aligned_cols=220 Identities=29% Similarity=0.497 Sum_probs=190.3
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC--cEEEECCcccCCCCHHHH
Q 000830 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA--GKVMVDGIDIKRLNLKSL 1092 (1265)
Q Consensus 1015 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~--G~I~idG~di~~~~l~~l 1092 (1265)
.|.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.+||.++...+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 367999999999963 358999999999999999999999999999999999999999 999999999987665 3
Q ss_pred hcccEEEecCCCCCcc-cHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1093 RKHIALVQQEPALFAT-SIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1093 R~~i~~VpQdp~LF~g-TIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
+++++||+|++.+|.. |++|||.++.. ..+. +.+.++++..++.++.++. ..+||||||||+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL-----------PAQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC-----------hhhCCHHHHHHH
Confidence 6789999999999976 99999987632 2232 3455566666665554443 357999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC---CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR---KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~---~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
+|||||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998764 6899999999999865 999999999999999999999
Q ss_pred hhcCCcHHH
Q 000830 1242 VENEDGAYF 1250 (1265)
Q Consensus 1242 l~~~~g~f~ 1250 (1265)
.+++...|.
T Consensus 227 ~~~p~~~~~ 235 (362)
T TIGR03258 227 YDAPADGFA 235 (362)
T ss_pred HhCcCcHHH
Confidence 886655553
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=366.67 Aligned_cols=203 Identities=33% Similarity=0.544 Sum_probs=180.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
+.++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999742 2368999999999999999999999999999999999999999999999999988888888899
Q ss_pred eeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000830 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1265)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 539 (1265)
|+||+|+|.+|++|++||+.+... ...+++.++++ +++++.+||||||||++||||++.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999986542 23333332221 34567899999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCc
Q 000830 540 SILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1265)
Q Consensus 540 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 602 (1265)
+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999988778999999999999988999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=379.93 Aligned_cols=212 Identities=35% Similarity=0.573 Sum_probs=180.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCH---HHHhc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL---KSLRK 1094 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l---~~lR~ 1094 (1265)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2458999999999999999999999999999999999999999999999999987654 44788
Q ss_pred ccEEEecCCCCCc-ccHHHHhccCCCC-----------CC---HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCCh
Q 000830 1095 HIALVQQEPALFA-TSIYENILYGKDG-----------AS---EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSG 1159 (1265)
Q Consensus 1095 ~i~~VpQdp~LF~-gTIreNl~~g~~~-----------~s---d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1159 (1265)
+++|+||++.+|. .|++||+.++... .. ++++.++++..++.+ .......+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence 9999999999886 5999999765311 01 223444444444433 33445568999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1160 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1160 GQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999865 9999999999999999
Q ss_pred Chhhhh
Q 000830 1237 THSSLV 1242 (1265)
Q Consensus 1237 t~~eLl 1242 (1265)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=385.91 Aligned_cols=214 Identities=29% Similarity=0.509 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccC--CCCHHHHhc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIK--RLNLKSLRK 1094 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~l~~lR~ 1094 (1265)
.|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999962 245899999999999999999999999999999999999999999999999984 344667899
Q ss_pred ccEEEecCC--CCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000830 1095 HIALVQQEP--ALFATSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1095 ~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrla 1166 (1265)
+++|+||+| .+|+.|++||+.++.. ..+. +.+.++++..++.++ ......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHH
Confidence 999999998 5788999999987421 2232 234555555555443 23445689999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||||++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998764 7899999999999974 99999999999999999999876
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=379.71 Aligned_cols=227 Identities=31% Similarity=0.463 Sum_probs=191.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCCCCHHH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKRLNLKS 1091 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~~l~~ 1091 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 3589999999999999999999999999999999999974 6999999999998888888
Q ss_pred HhcccEEEecCCCCC-cccHHHHhccCCC--C--CC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1092 LRKHIALVQQEPALF-ATSIYENILYGKD--G--AS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1092 lR~~i~~VpQdp~LF-~gTIreNl~~g~~--~--~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
+|++++|+||+|.+| ..|++||+.++.. . .. ++++.++++..++.+.+. ..+|+ ...+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~----~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDA----PAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcC----CcccCCHHHH
Confidence 999999999999755 6799999976431 1 11 235566666666644322 12333 3457999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhcCCcHHHHHH
Q 000830 1242 VENEDGAYFKLI 1253 (1265)
Q Consensus 1242 l~~~~g~f~~l~ 1253 (1265)
.+++...+.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14247 233 FTNPRHELTEKY 244 (250)
T ss_pred HcCCccHHHHHH
Confidence 875444454433
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=378.76 Aligned_cols=221 Identities=31% Similarity=0.514 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 35899999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEecCCCCCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFA-TSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~-gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||+|.+|. .|++||+.++.. ..+. +++.++++..++.+ +......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999996 699999976421 1121 22333343333321 012344567899999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCCc
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDG 1247 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g 1247 (1265)
++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.++...
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 229 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAN 229 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCC
Confidence 9999999999999999999999999999998753 7899999999998765 999999999999999999999764433
Q ss_pred HH
Q 000830 1248 AY 1249 (1265)
Q Consensus 1248 ~f 1249 (1265)
.+
T Consensus 230 ~~ 231 (242)
T cd03295 230 DF 231 (242)
T ss_pred hH
Confidence 34
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=395.99 Aligned_cols=223 Identities=27% Similarity=0.470 Sum_probs=186.2
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCc--ceEEECCeeCCCCChHHH
Q 000830 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS--GEILLDGNNIKGLDLKWL 456 (1265)
Q Consensus 379 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~--G~i~~~g~~~~~~~~~~~ 456 (1265)
.+.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.++ .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 357999999999963 358999999999999999999999999999999999999999 999999999976654 3
Q ss_pred hhheeEEccCCccccc-cHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 457 RQQIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
++.|+||+|++.+|+. ||+|||.|+... ...++..+. +.+.++.+ |++........+||||||||+||||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER-----VADALKLV--GLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHH
Confidence 5689999999999976 999999987421 122222211 11112222 3344455667789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC---CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCC
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV---GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1265)
||+.+|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++++.. ||+|++|++|++++.|+++++..++
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988754 7899999999999765 9999999999999999999998765
Q ss_pred chHH
Q 000830 610 NSAY 613 (1265)
Q Consensus 610 ~~~~ 613 (1265)
...|
T Consensus 231 ~~~~ 234 (362)
T TIGR03258 231 ADGF 234 (362)
T ss_pred CcHH
Confidence 4333
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=380.56 Aligned_cols=224 Identities=30% Similarity=0.494 Sum_probs=185.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCC--CC
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 452 (1265)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 35999999999963 3589999999999999999999999999999999999997 49999999998853 34
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCC---CCH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD---ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
...+|++|+||+|++.+|+.|++|||.++... ... +.+.++++..++.+. +++ ....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~----~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE---VKD----KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh---hHH----HHhCCcccCCHHH
Confidence 45678899999999999989999999886421 111 122333333222111 122 2344667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcch
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1265)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999865 99999999999999999999
Q ss_pred hccCCchHH
Q 000830 605 LISNPNSAY 613 (1265)
Q Consensus 605 l~~~~~~~~ 613 (1265)
+.+++...|
T Consensus 236 ~~~~~~~~~ 244 (254)
T PRK14273 236 LFFNPKNTK 244 (254)
T ss_pred HHhCCCChH
Confidence 876544433
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=373.71 Aligned_cols=203 Identities=38% Similarity=0.609 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 478999999963 35899999999999999999999999999999999999999999999999997654 3577899
Q ss_pred EEecCCCCCc-ccHHHHhccCCCC--CC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFA-TSIYENILYGKDG--AS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~-gTIreNl~~g~~~--~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||+|.+|. .|++||+.++... .+ ++++.++++..++.++.. ....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHH
Confidence 9999999886 5999999764221 12 223455555555544433 3345799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
|+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 7899999999999876 9999999999998875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=394.25 Aligned_cols=221 Identities=31% Similarity=0.520 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++ .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 358999999999999999999999999999999999999999999999999976554 35689
Q ss_pred eEEccCCccccc-cHHHHhccCCCC------CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDD------ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
+||+|++.+|+. |++||+.|+... .+.++..+ +.. +.++.+ |++......+.+||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA--KVT---QLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH--HHH---HHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 999999999985 999999987431 12222211 111 112222 2333345566789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988754 7899999999999766 99999999999999999999987654
Q ss_pred hHH
Q 000830 611 SAY 613 (1265)
Q Consensus 611 ~~~ 613 (1265)
..|
T Consensus 230 ~~~ 232 (353)
T PRK10851 230 TRF 232 (353)
T ss_pred chH
Confidence 433
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=377.90 Aligned_cols=218 Identities=33% Similarity=0.570 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----cceEEECCeeCCCC--ChH
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKGL--DLK 454 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~~--~~~ 454 (1265)
++++||+++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 35899999999999999999999999999999999999998 99999999998753 455
Q ss_pred HHhhheeEEccCCccccccHHHHhccCCCC---CCHHH----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHH
Q 000830 455 WLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1265)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1265)
.+|++++|+||++.+|+.|++||+.++... ...++ +.++++..+ +...+.......+.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAA-------LWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcC-------CCcchhhHhhCCcccCCHHHHH
Confidence 678899999999999999999999875321 11222 222222222 2111113455667899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhc
Q 000830 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 528 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767999999999998865 9999999999999999999887
Q ss_pred cCC
Q 000830 607 SNP 609 (1265)
Q Consensus 607 ~~~ 609 (1265)
..+
T Consensus 232 ~~~ 234 (247)
T TIGR00972 232 TNP 234 (247)
T ss_pred hCC
Confidence 543
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=380.64 Aligned_cols=219 Identities=32% Similarity=0.573 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCC--CCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1265)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 359999999999999999999999999999999999975 689999999999864 345
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCC--C-CH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
..+|++++|++|++.+|+.|++||+.++... . .. +++.++++..++.+ ...+..+..+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWD-------EVKDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCch-------hhhHHhhCCcccCCHHHH
Confidence 6778899999999999989999999875311 1 11 22233333332221 122345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccCC
Q 000830 606 ISNP 609 (1265)
Q Consensus 606 ~~~~ 609 (1265)
...+
T Consensus 236 ~~~~ 239 (253)
T PRK14242 236 FTRP 239 (253)
T ss_pred HcCC
Confidence 7653
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=389.86 Aligned_cols=226 Identities=29% Similarity=0.406 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCC----------CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCC
Q 000830 1017 TIELRGVHFSYPSRP----------EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKR 1086 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~----------~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1086 (1265)
-|+++|++++|+.+. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996421 2468999999999999999999999999999999999999999999999999998
Q ss_pred CCHH---HHhcccEEEecCC--CCC-cccHHHHhccCC----CCCCHHHH----HHHHHHhchHHHHHhCCCCccccccC
Q 000830 1087 LNLK---SLRKHIALVQQEP--ALF-ATSIYENILYGK----DGASEGEV----IEAAKLANAHSFISALPEGYSTKVGE 1152 (1265)
Q Consensus 1087 ~~l~---~lR~~i~~VpQdp--~LF-~gTIreNl~~g~----~~~sd~ei----~~al~~a~l~~~i~~lp~Gldt~vge 1152 (1265)
++.. .+|++++||+|+| .|| ..|+.+||.++. +..+.++. .++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 8754 3678999999999 477 479999986531 12343333 34444444421 12234
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeC
Q 000830 1153 RGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIES 1229 (1265)
Q Consensus 1153 ~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~ 1229 (1265)
...+||||||||++|||||+.+|++||+||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4567999999999999999999999999999999999999999999998764 7899999999999986 999999999
Q ss_pred CEEEEecChhhhhhcCCcHHHHH
Q 000830 1230 GKIIEQGTHSSLVENEDGAYFKL 1252 (1265)
Q Consensus 1230 G~Ive~Gt~~eLl~~~~g~f~~l 1252 (1265)
|+|+|.|++++++++....|.+.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHH
Confidence 99999999999988666667663
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=384.71 Aligned_cols=216 Identities=33% Similarity=0.522 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCC----CCHHH
Q 000830 1018 IELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKR----LNLKS 1091 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----~~l~~ 1091 (1265)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEecCC--CCCcccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1092 LRKHIALVQQEP--ALFATSIYENILYGKD--GASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1092 lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
+|++++||||+| .+|+.|++||+.++.. ..+.++ +.++++.+++.+ .........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 888999999998 6888999999987532 223333 334444444421 1123445679999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSS 1240 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1240 (1265)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999865 99999999999999999999
Q ss_pred hhh
Q 000830 1241 LVE 1243 (1265)
Q Consensus 1241 Ll~ 1243 (1265)
+.+
T Consensus 233 ~~~ 235 (290)
T PRK13634 233 IFA 235 (290)
T ss_pred Hhc
Confidence 875
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=380.26 Aligned_cols=224 Identities=33% Similarity=0.508 Sum_probs=189.5
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCC--CC
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKR--LN 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~ 1088 (1265)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 358999999999999999999999999999999999987 689999999999863 56
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCC--CCC---HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKD--GAS---EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~s---d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
...+|++++|+||++.+|..|++||+.++.. ... ++++.++++.+++.+. ++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHH
Confidence 6778999999999999999999999987532 111 2345556666655332 222334455689999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeC-----------CE
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIES-----------GK 1231 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~-----------G~ 1231 (1265)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999998778899999999999876 999999996 77
Q ss_pred EEEecChhhhhhcCCcHH
Q 000830 1232 IIEQGTHSSLVENEDGAY 1249 (1265)
Q Consensus 1232 Ive~Gt~~eLl~~~~g~f 1249 (1265)
++|.|+++++.+++...|
T Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (269)
T PRK14259 242 LVEFNETKKIFNSPKQKA 259 (269)
T ss_pred EEEeCCHHHHHhCcCChH
Confidence 999999999986444333
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=379.44 Aligned_cols=222 Identities=32% Similarity=0.558 Sum_probs=186.7
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCC--C
Q 000830 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--L 451 (1265)
Q Consensus 379 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~ 451 (1265)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999963 359999999999999999999999999999999999986 589999999999853 3
Q ss_pred ChHHHhhheeEEccCCccccccHHHHhccCCC---CCCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChH
Q 000830 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKD---DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1265)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1265)
+...+|++|+|++|++.+|+.|++||+.++.. ..+.+ ++.++++..+ ++.++.....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAA-------LWNEVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcC-------CChhhHHHHhcCCCCCCHH
Confidence 55678889999999999999999999987632 11222 2222232222 2222334566778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcc
Q 000830 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 525 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1265)
||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778899999999999865 9999999999999999999
Q ss_pred hhccCCc
Q 000830 604 ELISNPN 610 (1265)
Q Consensus 604 ~l~~~~~ 610 (1265)
++...+.
T Consensus 241 ~~~~~~~ 247 (260)
T PRK10744 241 TIFTKPA 247 (260)
T ss_pred HHHhCCC
Confidence 9876533
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=396.49 Aligned_cols=218 Identities=32% Similarity=0.513 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .++++
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999963 358999999999999999999999999999999999999999999999999987665 35789
Q ss_pred EEEecCCCCCcc-cHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
+||||++.+|.. |++||+.++.. ..+. +++.++++..++.++.++ ...+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999965 99999987632 1222 345566666666544433 33579999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCC
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1246 (1265)
||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 7899999999998875 99999999999999999999987655
Q ss_pred cHHH
Q 000830 1247 GAYF 1250 (1265)
Q Consensus 1247 g~f~ 1250 (1265)
..|-
T Consensus 227 ~~~~ 230 (369)
T PRK11000 227 NRFV 230 (369)
T ss_pred cHHH
Confidence 4443
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=385.63 Aligned_cols=220 Identities=31% Similarity=0.538 Sum_probs=185.4
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCC----ChHH
Q 000830 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKW 455 (1265)
Q Consensus 382 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~ 455 (1265)
++++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 24699999999999999999999999999999999999999999999999998653 3457
Q ss_pred HhhheeEEccCC--ccccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccc-cccCCCCCCChHHHHHHH
Q 000830 456 LRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGGQKQRIA 530 (1265)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqria 530 (1265)
+|++||||+|+| .+|+.|+.|||.++... .+.++..+. +.+.+..+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 888999999997 68888999999987422 233332221 12333333 5553 445678899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEeeCcchhcc
Q 000830 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 531 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
|||||+.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 3899999999999986 499999999999999999988876
Q ss_pred C
Q 000830 608 N 608 (1265)
Q Consensus 608 ~ 608 (1265)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=380.67 Aligned_cols=222 Identities=35% Similarity=0.532 Sum_probs=190.2
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCC--C
Q 000830 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKR--L 1087 (1265)
Q Consensus 1015 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~ 1087 (1265)
...|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 447999999999963 468999999999999999999999999999999999997 579999999999864 3
Q ss_pred CHHHHhcccEEEecCCCCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChh
Q 000830 1088 NLKSLRKHIALVQQEPALFATSIYENILYGKD--GA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160 (1265)
Q Consensus 1088 ~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1160 (1265)
+...+|+.++||||++.+|..|++||+.++.. .. + ++++.++++..++.+.+. +........||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHH
Confidence 46678999999999999999999999987522 11 2 234555566666544332 3345666789999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHS 1239 (1265)
Q Consensus 1161 QkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1239 (1265)
||||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778899999999999865 9999999999999999999
Q ss_pred hhhhcCC
Q 000830 1240 SLVENED 1246 (1265)
Q Consensus 1240 eLl~~~~ 1246 (1265)
++.+.+.
T Consensus 248 ~~~~~~~ 254 (267)
T PRK14237 248 NIFTNPK 254 (267)
T ss_pred HHhcCCC
Confidence 9976433
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=376.50 Aligned_cols=215 Identities=34% Similarity=0.529 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999964 459999999999999999999999999999999999999999999999999875543 256899
Q ss_pred EEccCCcccc-ccHHHHhccCCCCC------CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 462 LVNQEPALFA-TTIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
||+|+|.+|. .|++||+.++.... ...+..+ .+.+.+..+ |++........+||||||||++||||
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA-----KVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999986 49999998864211 1111111 111223322 23444556667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|+.+|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999988753 7899999999998765 999999999999999999988754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=365.68 Aligned_cols=200 Identities=39% Similarity=0.616 Sum_probs=181.7
Q ss_pred EEEEeEEEECCCCCC--cccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1018 IELRGVHFSYPSRPE--VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
|+++||+++|++..+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975321 3699999999999999999999999999999999999999999999999 6
Q ss_pred cEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000830 1096 IALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNP 1175 (1265)
Q Consensus 1096 i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p 1175 (1265)
++|+||+|.+|++|++||+.++. ..++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998853 34566778888888999999999999999999999999999999999999999999
Q ss_pred CEEEEecCcCCCCHHHHHHHHH-HHHHHc-CCceEEEEecCchhhhccCEEEEEeCCE
Q 000830 1176 EILLLDEATSALDVESERVVQQ-ALQRLM-RKRTTIIVAHRLSTIKNADQISVIESGK 1231 (1265)
Q Consensus 1176 ~ILlLDEaTSaLD~~te~~I~~-~l~~~~-~~~TvI~IaHRl~ti~~~DrI~vl~~G~ 1231 (1265)
+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 566554 4689999999999998999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=372.79 Aligned_cols=216 Identities=31% Similarity=0.483 Sum_probs=180.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH-hhhe
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1265)
|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 358999999999999999999999999999999999999999999999999987776554 5679
Q ss_pred eEEccCCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 539 (1265)
+|++|++.+|+. |++||+.++.......+.. .+...+.+.+..+ +......+.+||||||||++|||||+.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~l----~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRK--ARLERVYELFPRL----KERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHH--HHHHHHHHHHHhh----hhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999987 9999998864322111111 1111222222222 23345566789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhc
Q 000830 540 SILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 540 ~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999998875 48999999999998866 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=374.58 Aligned_cols=216 Identities=31% Similarity=0.562 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999963 45899999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEecCCCC-CcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000830 1098 LVQQEPAL-FATSIYENILYGKD--GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174 (1265)
Q Consensus 1098 ~VpQdp~L-F~gTIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~ 1174 (1265)
|+||++.+ +..|+++|+.++.. ..+.++..+ .+.++++.+ |++........+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 46799999976421 122222111 122333333 455555566678999999999999999999
Q ss_pred CCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhhc
Q 000830 1175 PEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1175 p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999876 37899999999999988999999999999999999999863
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=385.82 Aligned_cols=217 Identities=26% Similarity=0.464 Sum_probs=182.6
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCC---------
Q 000830 1018 IELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKR--------- 1086 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--------- 1086 (1265)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997432 1358999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhcccEEEecCC--CCCcccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhCC
Q 000830 1087 ---------------LNLKSLRKHIALVQQEP--ALFATSIYENILYGKD--GASEGE----VIEAAKLANAHSFISALP 1143 (1265)
Q Consensus 1087 ---------------~~l~~lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp 1143 (1265)
.+...+|++++||||+| .+|..|++|||.++.. ..+.++ +.++++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 13457889999999986 6888999999987632 233333 444454444421
Q ss_pred CCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-c
Q 000830 1144 EGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-A 1221 (1265)
Q Consensus 1144 ~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~ 1221 (1265)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. |
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 12334556899999999999999999999999999999999999999999999875 47899999999998755 9
Q ss_pred CEEEEEeCCEEEEecChhhhhhc
Q 000830 1222 DQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1222 DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
|||++|++|++++.|+++++.++
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998763
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=381.58 Aligned_cols=212 Identities=29% Similarity=0.536 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++|+|++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...++++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 23599999999999999999999999999999999999999999999999999888888888899
Q ss_pred eEEccCC--ccccccHHHHhccCCCC--CCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 461 GLVNQEP--ALFATTIRENILYGKDD--ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 461 ~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
+||+|+| .++..|+.||+.++... .+.+ ++.++++..++. ........+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-----------DFRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-----------HHhcCChhhCCHHHHHHHHHH
Confidence 9999998 57888999999986421 1222 222223333322 223344568999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEeeCcchh
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l 605 (1265)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998875 4899999999999985 5999999999999999998654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=385.88 Aligned_cols=220 Identities=30% Similarity=0.518 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCC----CChHH
Q 000830 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----LDLKW 455 (1265)
Q Consensus 382 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~ 455 (1265)
++++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 1469999999999999999999999999999999999999999999999999863 34556
Q ss_pred HhhheeEEccCC--ccccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCccccc-ccccCCCCCCChHHHHHHH
Q 000830 456 LRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIA 530 (1265)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqria 530 (1265)
.|++|+||+|+| .+|+.||+|||.|+... .+.++..+.+ . +.++.+ |++ ......+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~--~---~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKA--R---EMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH--H---HHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 68888999999987421 2333222111 1 112222 232 2234567789999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 531 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999988753 8999999999999865 99999999999999999988875
Q ss_pred C
Q 000830 608 N 608 (1265)
Q Consensus 608 ~ 608 (1265)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 4
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=378.64 Aligned_cols=218 Identities=31% Similarity=0.518 Sum_probs=184.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCC---------
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN--------- 1088 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~--------- 1088 (1265)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 35899999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcccEEEecCCCCCc-ccHHHHhccCCC---CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCC
Q 000830 1089 ----LKSLRKHIALVQQEPALFA-TSIYENILYGKD---GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQ 1156 (1265)
Q Consensus 1089 ----l~~lR~~i~~VpQdp~LF~-gTIreNl~~g~~---~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~ 1156 (1265)
...+|++++|+||++.+|. .|++||+.++.. ... ++++.++++..++.++ .......
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence 2467889999999999885 799999986421 112 2334455555554443 3344568
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEE
Q 000830 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKII 1233 (1265)
Q Consensus 1157 LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Iv 1233 (1265)
||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998764 7899999999999965 9999999999999
Q ss_pred EecChhhhhhcCCcHH
Q 000830 1234 EQGTHSSLVENEDGAY 1249 (1265)
Q Consensus 1234 e~Gt~~eLl~~~~g~f 1249 (1265)
+.|+++++.+.....|
T Consensus 227 ~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 227 EQGKPDEIFRQPKEER 242 (252)
T ss_pred EeCCHHHHhcCCCcHH
Confidence 9999999987544334
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=379.59 Aligned_cols=225 Identities=32% Similarity=0.498 Sum_probs=188.5
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCCC--C
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKRL--N 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~ 1088 (1265)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36999999999963 3589999999999999999999999999999999999985 799999999998653 3
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
...+|+.++|+||++.+|..|++||+.++.. ..+. +++.++++.+++.+.+ +.........||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 4567889999999999999999999986421 1222 2345555555553221 1222344567999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999876 999999999999999999999
Q ss_pred hhcCCcHHH
Q 000830 1242 VENEDGAYF 1250 (1265)
Q Consensus 1242 l~~~~g~f~ 1250 (1265)
.+++...|.
T Consensus 241 ~~~~~~~~~ 249 (258)
T PRK14268 241 FHNPREKST 249 (258)
T ss_pred hcCCCCHHH
Confidence 865444443
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=377.32 Aligned_cols=220 Identities=35% Similarity=0.556 Sum_probs=180.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCC---hHHHhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWLRQ 458 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~ 458 (1265)
++++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 145999999999999999999999999999999999999999999999999988776 456788
Q ss_pred heeEEccCCcccc-ccHHHHhccCCCCCC--HHHH---HHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 459 QIGLVNQEPALFA-TTIRENILYGKDDAT--MEEI---TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
.++|++|++.+|. .|++||+.++..... ...+ ........+.+.+..+ |++......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 9999999999887 599999987542110 0000 0000011112223332 334445667789999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
|||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 99999999999999999999999999999999875 38999999999999984 999999999999999998876
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=380.83 Aligned_cols=224 Identities=27% Similarity=0.461 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHH---HHh
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK---SLR 1093 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR 1093 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 4589999999999999999999999999999999999999999999999999876543 357
Q ss_pred cccEEEecCCCCCcc-cHHHHhccCCC---CCCHH----HHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1094 KHIALVQQEPALFAT-SIYENILYGKD---GASEG----EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~g-TIreNl~~g~~---~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
++++|+||++.+|.+ |++||+.++.. ..+.+ .+.++++..++.+. ......+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 889999999999986 99999976421 12222 23344444444332 2233457999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999876 9999999999999999999998
Q ss_pred hcCCcHHHHHHH
Q 000830 1243 ENEDGAYFKLIN 1254 (1265)
Q Consensus 1243 ~~~~g~f~~l~~ 1254 (1265)
+.....+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 754445555554
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=380.49 Aligned_cols=223 Identities=32% Similarity=0.533 Sum_probs=188.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCCCC--HH
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKRLN--LK 1090 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~~~--l~ 1090 (1265)
=+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 468999999999999999999999999999999999986 47999999999987543 34
Q ss_pred HHhcccEEEecCCCCCcccHHHHhccCC--CCC------CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1091 SLRKHIALVQQEPALFATSIYENILYGK--DGA------SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1091 ~lR~~i~~VpQdp~LF~gTIreNl~~g~--~~~------sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
.+|++++|+||++.+|.+|++||+.++. .+. .++++.++++..++.+.+ .+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 6789999999999999999999997641 111 123455566666654322 1234455678999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999875 999999999999999999999
Q ss_pred hhcCCcHHH
Q 000830 1242 VENEDGAYF 1250 (1265)
Q Consensus 1242 l~~~~g~f~ 1250 (1265)
++++...|.
T Consensus 236 ~~~~~~~~~ 244 (251)
T PRK14244 236 FKNPQSSKT 244 (251)
T ss_pred hcCCCChHH
Confidence 876555443
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=374.28 Aligned_cols=210 Identities=27% Similarity=0.446 Sum_probs=178.3
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH---H
Q 000830 1017 TIELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS---L 1092 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---l 1092 (1265)
.++++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146899999999999999999999999999999999999999999999999998887654 3
Q ss_pred h-cccEEEecCCCCCcc-cHHHHhccCC--CCCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1093 R-KHIALVQQEPALFAT-SIYENILYGK--DGASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1093 R-~~i~~VpQdp~LF~g-TIreNl~~g~--~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
| +.++|+||+|.+|.. |++||+.++. ...+. +++.++++..++ +........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL-----------EHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHH
Confidence 3 689999999999875 9999997631 11122 234445544444 333444556899999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKNADQISVIESGKIIEQGT 1237 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt 1237 (1265)
++||||++++|+||||||||++||+++...+.+.|++.. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4789999999999999999999999999998775
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=380.58 Aligned_cols=223 Identities=32% Similarity=0.530 Sum_probs=190.7
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCC--C
Q 000830 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKR--L 1087 (1265)
Q Consensus 1015 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~ 1087 (1265)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 457999999999963 3589999999999999999999999999999999999984 89999999999875 3
Q ss_pred CHHHHhcccEEEecCCCCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChh
Q 000830 1088 NLKSLRKHIALVQQEPALFATSIYENILYGKD--GA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160 (1265)
Q Consensus 1088 ~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1160 (1265)
+...+|++++|+||++.+|.+|++||+.++.. .. . ++++.++++.+++.+.+. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678999999999999999999999976421 11 1 234566666666544332 2345566789999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHS 1239 (1265)
Q Consensus 1161 QkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1239 (1265)
||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778999999999999875 9999999999999999999
Q ss_pred hhhhcCCc
Q 000830 1240 SLVENEDG 1247 (1265)
Q Consensus 1240 eLl~~~~g 1247 (1265)
++.+++..
T Consensus 253 ~~~~~~~~ 260 (272)
T PRK14236 253 TLFTSPAK 260 (272)
T ss_pred HHhcCCCc
Confidence 99864333
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=382.58 Aligned_cols=217 Identities=34% Similarity=0.549 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCC---CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCC-HHHH
Q 000830 1017 TIELRGVHFSYPSRP---EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN-LKSL 1092 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~---~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-l~~l 1092 (1265)
.|+++|++++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997431 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcccEEEecCCC--CCcccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1093 RKHIALVQQEPA--LFATSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1093 R~~i~~VpQdp~--LF~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
|++++|+||+|. +|..|+.+|+.++.. ..+ ++++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 677799999987521 122 345667777777766655443 5799999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhh
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999998753 78999999999999889999999999999999999997
Q ss_pred hc
Q 000830 1243 EN 1244 (1265)
Q Consensus 1243 ~~ 1244 (1265)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 63
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=394.99 Aligned_cols=206 Identities=35% Similarity=0.622 Sum_probs=178.2
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHH----hcccEEEecCCCCCc-c
Q 000830 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL----RKHIALVQQEPALFA-T 1108 (1265)
Q Consensus 1034 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l----R~~i~~VpQdp~LF~-g 1108 (1265)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876554 468999999999996 5
Q ss_pred cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000830 1109 SIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDE 1182 (1265)
Q Consensus 1109 TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDE 1182 (1265)
|++||+.++.. ..+ ++++.++++..++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987521 112 234566677777665554443 5799999999999999999999999999
Q ss_pred CcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCCcHHH
Q 000830 1183 ATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAYF 1250 (1265)
Q Consensus 1183 aTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~ 1250 (1265)
|||+||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++...|.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 999999999999999999875 37899999999999865 999999999999999999999875544443
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=378.29 Aligned_cols=224 Identities=31% Similarity=0.509 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--P---TAGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--~~l 1089 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 358999999999999999999999999999999999997 3 58999999999864 445
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--C-CCHH----HHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--G-ASEG----EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~-~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|++++|+||+|.+|..|++||+.++.. . .+++ ++.++++..++.+++. ........+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999976421 1 1222 2344455555543322 223445668999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999875 999999999999999999998
Q ss_pred hhcCCcHHH
Q 000830 1242 VENEDGAYF 1250 (1265)
Q Consensus 1242 l~~~~g~f~ 1250 (1265)
.++....|.
T Consensus 242 ~~~~~~~~~ 250 (259)
T PRK14274 242 FSNPDDQRT 250 (259)
T ss_pred hhCCCCHHH
Confidence 765444433
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=378.73 Aligned_cols=224 Identities=33% Similarity=0.506 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 1089 (1265)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 358999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--CCC-----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--GAS-----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~s-----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|+.++|+||++.+|+.|++||+.++.. ... ++++.++++..+++... + ........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~----~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---K----DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---H----HHhccChhhCCHHHH
Confidence 567889999999999999999999986532 111 22344555555543211 1 122345568999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778899999999999876 999999999999999999999
Q ss_pred hhcCCcHHH
Q 000830 1242 VENEDGAYF 1250 (1265)
Q Consensus 1242 l~~~~g~f~ 1250 (1265)
...+...|.
T Consensus 234 ~~~~~~~~~ 242 (251)
T PRK14251 234 FIAPKKQIT 242 (251)
T ss_pred HhCCCCHHH
Confidence 764443343
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=371.41 Aligned_cols=203 Identities=32% Similarity=0.524 Sum_probs=169.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChH---HHhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 458 (1265)
++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 23599999999999999999999999999999999999999999999999998766543 4678
Q ss_pred heeEEccCCccccc-cHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 459 QIGLVNQEPALFAT-TIRENILYGKDD--AT----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
+++|++|++.+|.. |++||+.++... .. .+++.++++..+ +.........+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVG-----------LEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHH
Confidence 99999999999875 999999875311 11 122333333332 2233344556899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i 596 (1265)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998875 48999999999999875 999999999975
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=376.00 Aligned_cols=218 Identities=35% Similarity=0.570 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999741 45899999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEccCCcccc-ccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccc--cccCCCCCCChHHHHHHHHHHHhc
Q 000830 462 LVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFET--QVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
|++|++.+|+ .|++||+.++... ...++.. ..+.+.+..+ |+.. ...+.+.+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999996 5999999875321 1111111 1122333333 2332 456677899999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
++|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998753 8999999999998765 999999999999999999888654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=374.71 Aligned_cols=220 Identities=35% Similarity=0.561 Sum_probs=182.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChH---HHh
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r 457 (1265)
|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997431 12699999999999999999999999999999999999999999999999998876553 347
Q ss_pred hheeEEccCCcccc-ccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 458 QQIGLVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
+.++|++|++.+|. .|++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 88999999999997 5999999875321 1111111 1122333333 34444555667899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|+.+|++|||||||++||+.+...+.+.|+++. + ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999998875 3 8999999999999865 999999999999999998887643
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=370.42 Aligned_cols=207 Identities=26% Similarity=0.487 Sum_probs=176.6
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
|+++||+++|++... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999974321 268999999999999999999999999999999999999999999999999975 456778999
Q ss_pred EEEecCCCCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
+|+||+|.+|.+ |++||+.+... ..+ ++++.++++..++.+. ......+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975321 122 2344555555555443 33455689999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 47899999999999876 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=385.36 Aligned_cols=220 Identities=27% Similarity=0.493 Sum_probs=181.6
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCC---------
Q 000830 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--------- 450 (1265)
Q Consensus 382 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--------- 450 (1265)
|+++|++|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1359999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHHhhheeEEccCC--ccccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCccccc
Q 000830 451 ---------------LDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFE 511 (1265)
Q Consensus 451 ---------------~~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~ 511 (1265)
.+...+|++||||+|+| .+|..||+|||.|+... ...++..+.+ . +.+..+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~--~---~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRA--A---KYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHH--H---HHHHHc--CCC
Confidence 13456788999999986 67888999999987432 2333332211 1 112222 232
Q ss_pred -ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEE
Q 000830 512 -TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVI 588 (1265)
Q Consensus 512 -t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i 588 (1265)
........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+. .||+|
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 23556778999999999999999999999999999999999999999999998875 4899999999999875 49999
Q ss_pred EEEeCCEEEEeeCcchhccC
Q 000830 589 AVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 589 ~~l~~G~i~~~g~~~~l~~~ 608 (1265)
++|++|++++.|+++++.+.
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=375.88 Aligned_cols=224 Identities=34% Similarity=0.556 Sum_probs=189.0
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCC--CC
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKR--LN 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~ 1088 (1265)
|.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999973 3589999999999999999999999999999999999863 68999999999875 45
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCC--CC-----CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKD--GA-----SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
...+|++++|+||+|.+|+.|+++|+.++.. .. .++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678999999999999999999999987521 11 1234455555555543322 22344556899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSS 1240 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1240 (1265)
|||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778899999999998876 99999999999999999999
Q ss_pred hhhcCCcHH
Q 000830 1241 LVENEDGAY 1249 (1265)
Q Consensus 1241 Ll~~~~g~f 1249 (1265)
+..+....+
T Consensus 232 ~~~~~~~~~ 240 (250)
T PRK14240 232 LFTNPKDKR 240 (250)
T ss_pred HHhCCCChH
Confidence 976544444
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=376.43 Aligned_cols=220 Identities=34% Similarity=0.543 Sum_probs=179.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh---HHHhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1265)
|+++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2459999999999999999999999999999999999999999999999999877654 34678
Q ss_pred heeEEccCCccccc-cHHHHhccCCCCCC--HHHH---HHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 459 QIGLVNQEPALFAT-TIRENILYGKDDAT--MEEI---TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
+++||+|++.+|+. |++||+.++..... .... ........+.+.+..+ |++......+.+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 89999999998874 99999987642110 0000 0000011122223333 344445667789999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
|||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||++++|++|++++.|+++++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999998874 37999999999999865 999999999999999998886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=381.43 Aligned_cols=214 Identities=30% Similarity=0.509 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3589999999999999999999999999999999999999999999999999887778889999
Q ss_pred EEEecCC--CCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1097 ALVQQEP--ALFATSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1097 ~~VpQdp--~LF~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
+||||+| .+|..|+++|+.++.. ..+. +.+.++++..++.++.... ...||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4788899999976421 2232 3456667776766554443 347999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhh
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIK-NADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||+.+|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+. .||||++|++|++++.|+++++++
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999999999999998764 789999999999996 599999999999999999999976
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=380.31 Aligned_cols=215 Identities=33% Similarity=0.603 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++|++++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 34689999999999999999999999999999999999999999999999999887878889999
Q ss_pred EEEecCC--CCCcccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1097 ALVQQEP--ALFATSIYENILYGKD--GASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1097 ~~VpQdp--~LF~gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
+|+||+| .++..|++||+.++.. ..+.++ +.++++..++.++..+ ...+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4567899999987521 123332 4445555555544433 3468999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999998753 489999999999998899999999999999999999876
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=377.81 Aligned_cols=223 Identities=32% Similarity=0.509 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc---CCC--CCcEEEECCcccCCC--CH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF---YDP--TAGKVMVDGIDIKRL--NL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl---~~p--~~G~I~idG~di~~~--~l 1089 (1265)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 3589999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--CC-----CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--GA-----SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|++++|+||+|.+|..|++||+.++.. .. .+++++++++..++.+++. +.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 677899999999999999999999976421 11 1234455555555543332 234456678999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhcCCcHH
Q 000830 1242 VENEDGAY 1249 (1265)
Q Consensus 1242 l~~~~g~f 1249 (1265)
.+++...|
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14245 233 FTNPEKEA 240 (250)
T ss_pred hcCCCChH
Confidence 87544443
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=387.11 Aligned_cols=229 Identities=27% Similarity=0.414 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCC----------CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCC
Q 000830 381 HIEFKDVSFCYPSRP----------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~----------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~ 450 (1265)
-++++|++++|+.+. ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996321 2468999999999999999999999999999999999999999999999999988
Q ss_pred CChHH---HhhheeEEccCC--cccc-ccHHHHhccCC----CCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCC
Q 000830 451 LDLKW---LRQQIGLVNQEP--ALFA-TTIRENILYGK----DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQ 520 (1265)
Q Consensus 451 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 520 (1265)
.+... +|++|+||+|+| .|++ .||.|||.++. +..+.++..+.++ ++.+.+ .++ +......+.+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~--~~l~~v-gl~---~~~~~~~p~~ 161 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVK--AMMLKV-GLL---PNLINRYPHE 161 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHH--HHHHHc-CCC---hHHhcCCccc
Confidence 87543 577899999998 4775 59999997542 1223333322211 122222 121 1234566788
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 000830 521 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1265)
Q Consensus 521 LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~ 597 (1265)
||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999976 9999999999999
Q ss_pred EeeCcchhccCCchHHHH
Q 000830 598 KTGSHEELISNPNSAYAA 615 (1265)
Q Consensus 598 ~~g~~~~l~~~~~~~~~~ 615 (1265)
+.|+.+++..++...|.+
T Consensus 242 e~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 242 ELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEcCHHHHHcCCCCHHHH
Confidence 999999998776566654
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=379.59 Aligned_cols=220 Identities=30% Similarity=0.489 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 1089 (1265)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999963 358999999999999999999999999999999999865 789999999999865 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--GA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|++++|+||++.+|.+|++||+.++.. .. . ++.+.++++..++.+.+ .........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHH
Confidence 567899999999999999999999986421 11 1 23345555555443211 1223445668999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999998865 999999999999999999999
Q ss_pred hhcCC
Q 000830 1242 VENED 1246 (1265)
Q Consensus 1242 l~~~~ 1246 (1265)
.++..
T Consensus 251 ~~~~~ 255 (268)
T PRK14248 251 FTSPK 255 (268)
T ss_pred HhCCC
Confidence 87543
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=367.99 Aligned_cols=199 Identities=30% Similarity=0.533 Sum_probs=173.3
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEE
Q 000830 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIAL 1098 (1265)
Q Consensus 1019 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~ 1098 (1265)
+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 358999999999999999999999999999999999999999999999998864 457789999
Q ss_pred EecCC--CCCcccHHHHhccCCCCC--CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000830 1099 VQQEP--ALFATSIYENILYGKDGA--SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174 (1265)
Q Consensus 1099 VpQdp--~LF~gTIreNl~~g~~~~--sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~ 1174 (1265)
+||+| .+|..|++||+.++.... .++++.++++..++.++..+.| ..||||||||++|||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 467889999998754322 2356777788877766544433 46999999999999999999
Q ss_pred CCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEE
Q 000830 1175 PEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKII 1233 (1265)
Q Consensus 1175 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Iv 1233 (1265)
|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999874 57899999999999976 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=374.30 Aligned_cols=216 Identities=28% Similarity=0.488 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH-Hhccc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS-LRKHI 1096 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~i 1096 (1265)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 35899999999999999999999999999999999999999999999999998877655 45789
Q ss_pred EEEecCCCCCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKD--GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLK 1173 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr 1173 (1265)
+|+||++.+|.+ |++||+.++.. ....++..+ .+.++++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 99999986432 112222111 123334443 45545556667899999999999999999
Q ss_pred CCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1174 NPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1174 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 47899999999988766 99999999999999999999865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=368.08 Aligned_cols=203 Identities=28% Similarity=0.492 Sum_probs=177.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++||+++|++ .++|+|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 35899999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEecCCCCCcc-cHHHHhccCC--CCCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGK--DGAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~--~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||+|.+|.+ |++||+.+.. ...+ ++++.++++..++.++.+ +. ..+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KK----IGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cc----hhhCCHHHHHHHHHHHH
Confidence 99999999986 9999997631 1111 245566677776655432 32 34699999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
|+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998777999999999999975 9999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=378.97 Aligned_cols=220 Identities=33% Similarity=0.531 Sum_probs=184.9
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCC--C
Q 000830 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--L 451 (1265)
Q Consensus 379 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~ 451 (1265)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 3599999999999999999999999999999999999975 89999999999864 3
Q ss_pred ChHHHhhheeEEccCCccccccHHHHhccCCC--CC--CH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCCh
Q 000830 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKD--DA--TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1265)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1265)
+...+|+.++||+|++.+|+.|+.||+.++.. .. .. +++.++++..+ +++.+.+.....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAG-------LWEEVKDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-------CchhhhHHhhCCcccCCH
Confidence 45677889999999999998899999987531 10 11 12222333322 222122344567789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCc
Q 000830 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1265)
Q Consensus 524 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1265)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988778899999999999865 999999999999999999
Q ss_pred chhccC
Q 000830 603 EELISN 608 (1265)
Q Consensus 603 ~~l~~~ 608 (1265)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 988754
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=377.38 Aligned_cols=227 Identities=33% Similarity=0.502 Sum_probs=190.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCCC--CH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKRL--NL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~l 1089 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3589999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC---CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD---GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~---~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|++++|+||+|.+|..|++||+.++.. ... ++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 567889999999999999999999986421 111 233555666666543322 224455678999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998765 999999999999999999999
Q ss_pred hhcCCcHHHHHH
Q 000830 1242 VENEDGAYFKLI 1253 (1265)
Q Consensus 1242 l~~~~g~f~~l~ 1253 (1265)
.++....|.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14262 233 VERPKNKLTEEY 244 (250)
T ss_pred HhCCCChHHHHH
Confidence 875444455443
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=392.10 Aligned_cols=209 Identities=32% Similarity=0.474 Sum_probs=178.6
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCc----ccCCCCHHHH---h-cccEEEecCCCC
Q 000830 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI----DIKRLNLKSL---R-KHIALVQQEPAL 1105 (1265)
Q Consensus 1034 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~----di~~~~l~~l---R-~~i~~VpQdp~L 1105 (1265)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. |+...+...+ | ++++||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5799999999999999999999999999999999999999999999996 6777765554 3 589999999999
Q ss_pred Cc-ccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000830 1106 FA-TSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEIL 1178 (1265)
Q Consensus 1106 F~-gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~IL 1178 (1265)
|+ .|++||+.++.. ..+. +...++++.+++.++.+.. ..+||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 799999987631 1222 3456667777665554333 3469999999999999999999999
Q ss_pred EEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCCcHHHHHH
Q 000830 1179 LLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1179 lLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l~ 1253 (1265)
|||||||+||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++.++.+.|.+.+
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~ 264 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHHH
Confidence 99999999999999999999998764 7899999999999855 999999999999999999999876555555443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=374.19 Aligned_cols=220 Identities=35% Similarity=0.586 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCC--------
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN-------- 1088 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-------- 1088 (1265)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999963 35899999999999999999999999999999999999999999999999987542
Q ss_pred HHHHhcccEEEecCCCCCc-ccHHHHhccCC---CCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1089 LKSLRKHIALVQQEPALFA-TSIYENILYGK---DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~-gTIreNl~~g~---~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
...+|++++||||++.+|. .|++||+.++. .....++..+. +.+.++.+ |++........+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3567889999999999886 69999997641 11222222111 12233333 44433445567899999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998764 7899999999999976 9999999999999999999987
Q ss_pred hcCC
Q 000830 1243 ENED 1246 (1265)
Q Consensus 1243 ~~~~ 1246 (1265)
+...
T Consensus 233 ~~~~ 236 (250)
T PRK11264 233 ADPQ 236 (250)
T ss_pred cCCC
Confidence 6443
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=393.00 Aligned_cols=214 Identities=25% Similarity=0.474 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999998888999999
Q ss_pred eEEccCCcc-ccccHHHHhccCCCCC-------C---HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHH
Q 000830 461 GLVNQEPAL-FATTIRENILYGKDDA-------T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 461 ~~v~Q~~~l-f~~ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1265)
+||+|++.+ |+.|++||+.+++... . .+.+.++++..++. ........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-----------~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-----------QFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHH
Confidence 999999987 5669999999875211 1 12233333333332 223445678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 530 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
+|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999885 48999999999999965 99999999999999999999886
Q ss_pred C
Q 000830 608 N 608 (1265)
Q Consensus 608 ~ 608 (1265)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=377.33 Aligned_cols=220 Identities=32% Similarity=0.500 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCcEEEECCcccCCC--CH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--P---TAGKVMVDGIDIKRL--NL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~~--~l 1089 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 358999999999999999999999999999999999954 6 489999999998643 34
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--GA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|+.++||||+|.+|+.|++||+.++.. .. . ++++.++++.+++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 11 1 233445555555543222 234455678999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999865 999999999999999999999
Q ss_pred hhcCC
Q 000830 1242 VENED 1246 (1265)
Q Consensus 1242 l~~~~ 1246 (1265)
.+++.
T Consensus 235 ~~~~~ 239 (252)
T PRK14239 235 FMNPK 239 (252)
T ss_pred HhCCC
Confidence 87543
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=375.60 Aligned_cols=225 Identities=30% Similarity=0.493 Sum_probs=189.2
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCcEEEECCcccCCC--
Q 000830 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--P---TAGKVMVDGIDIKRL-- 1087 (1265)
Q Consensus 1015 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~~-- 1087 (1265)
+|.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++...
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 367999999999963 358999999999999999999999999999999999986 4 689999999998653
Q ss_pred CHHHHhcccEEEecCCCCCc-ccHHHHhccCCC--C-CC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCCh
Q 000830 1088 NLKSLRKHIALVQQEPALFA-TSIYENILYGKD--G-AS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSG 1159 (1265)
Q Consensus 1088 ~l~~lR~~i~~VpQdp~LF~-gTIreNl~~g~~--~-~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSg 1159 (1265)
+...+|++++|+||++.+|. .|++||+.++.. . .+ ++++.++++..++.+.+.. .......+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCH
Confidence 45567899999999999997 599999976421 1 11 2334555556665443321 23345668999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 000830 1160 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1160 GQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~ 1238 (1265)
|||||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998878899999999999865 999999999999999999
Q ss_pred hhhhhcCCcHH
Q 000830 1239 SSLVENEDGAY 1249 (1265)
Q Consensus 1239 ~eLl~~~~g~f 1249 (1265)
+++..++...|
T Consensus 232 ~~~~~~~~~~~ 242 (252)
T PRK14256 232 KKIFTTPEKKQ 242 (252)
T ss_pred HHHHhCCCcHH
Confidence 99987554443
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=380.73 Aligned_cols=216 Identities=30% Similarity=0.539 Sum_probs=189.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC---cEEEECCcccCCCCHHHH
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA---GKVMVDGIDIKRLNLKSL 1092 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~idG~di~~~~l~~l 1092 (1265)
+.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 469999999999742 2358999999999999999999999999999999999999987 899999999988777788
Q ss_pred hcccEEEecCC--CCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1093 RKHIALVQQEP--ALFATSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1093 R~~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
|++++||||+| .+++.|++|||.++.. ..+. +.+.++++..++.++....| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 99999999998 4678899999987522 2333 33566677777766554443 5899999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhh
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
++|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998764 78999999999999889999999999999999999887
Q ss_pred h
Q 000830 1243 E 1243 (1265)
Q Consensus 1243 ~ 1243 (1265)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 5
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=394.99 Aligned_cols=218 Identities=31% Similarity=0.504 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999766543 4679
Q ss_pred eEEccCCccccc-cHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
+||+|++.+|+. |++||+.|+... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999976 999999987431 12222111 111222222 23334455667899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 9999999999999999999999999988743 8999999999998865 99999999999999999999876643
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=369.56 Aligned_cols=209 Identities=27% Similarity=0.488 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 3589999999999999999999999999999999999999999999999988753 356788999
Q ss_pred EEecCCCCCcc-cHHHHhccCCC--CC----CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGKD--GA----SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~~--~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||++.+|.. |+++|+.++.. .. .++++.++++..++.++.... ..+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999998875 99999976311 11 123456666666665544332 34799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999998753 6899999999999876 999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=379.28 Aligned_cols=221 Identities=30% Similarity=0.461 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 3689999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCCCCCcc-cHHHHhccCCC----------CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKD----------GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~----------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
+|+||++.+|.+ |++||+.++.. ...++++.++++.+++.++....| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 999999877655 99999986521 012345677777777765544332 46999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
+|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999998753 7899999999999965 9999999999999999999987
Q ss_pred hcCCcHHHHHH
Q 000830 1243 ENEDGAYFKLI 1253 (1265)
Q Consensus 1243 ~~~~g~f~~l~ 1253 (1265)
+ ......++
T Consensus 237 ~--~~~~~~~~ 245 (265)
T PRK10575 237 R--GETLEQIY 245 (265)
T ss_pred C--HHHHHHHh
Confidence 5 23344444
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=379.47 Aligned_cols=216 Identities=31% Similarity=0.518 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.++++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 34599999999999999999999999999999999999999999999999999888777788899
Q ss_pred eEEccCC--ccccccHHHHhccCCCC--CCHHH----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 461 GLVNQEP--ALFATTIRENILYGKDD--ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 461 ~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
+|++|++ .+++.|++|||.++... .+.++ +.++++..+ ++..+.....+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVG-----------MEDFLNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcC-----------ChhhhhCCcccCCHHHHHHHHHH
Confidence 9999998 45677999999886321 12222 223333333 23334455568999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|||+.+|++|||||||++||+.+...+.+.|.++.+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 7999999999999988999999999999999999888764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=361.38 Aligned_cols=217 Identities=31% Similarity=0.537 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCc---ccCCCCHHHHh
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI---DIKRLNLKSLR 1093 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~---di~~~~l~~lR 1093 (1265)
.|.+++++..|+. .++++|||++|+.||.+|+.||||||||||++++.|+..|++|+|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 3788899998864 45899999999999999999999999999999999999999999999999 777643 344
Q ss_pred cccEEEecCCCCCc-ccHHHHhccCCC----CC----CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1094 KHIALVQQEPALFA-TSIYENILYGKD----GA----SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~-gTIreNl~~g~~----~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
++||+|+|+..||. .||++||+||.. .. ....+.+-++.+++..+-+.-| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 78999999999985 699999999952 11 2345566677777776666555 5799999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
+||||||..+|++|+||||.++||++-.+.+++.|++... +.|+++|||+.+.+.. ||||+||++|+|.+.|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999999764 7899999999999876 999999999999999999999
Q ss_pred hhcCCcHH
Q 000830 1242 VENEDGAY 1249 (1265)
Q Consensus 1242 l~~~~g~f 1249 (1265)
...+++.|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 88777655
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=392.32 Aligned_cols=222 Identities=32% Similarity=0.548 Sum_probs=184.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
..|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++ .+++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 358999999999999999999999999999999999999999999999999977654 4678
Q ss_pred eeEEccCCccccc-cHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
||||+|++.||+. ||+|||.|+... .+..+..+ +.. +.++.+ |+.........+||||||||+||||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~--~v~---~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS--RVN---EMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH--HHH---HHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999986 999999987431 12222211 111 122222 2333445566789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCchHH
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1265)
.+|++||||||||+||+.++..+.+.|+++. .+.|+|+|||+++++.. ||+|++|++|++++.|+++|+..++...|
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 9999999999999999999999998887764 37999999999998755 99999999999999999999987755433
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=376.77 Aligned_cols=219 Identities=32% Similarity=0.509 Sum_probs=185.2
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCC-------
Q 000830 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL------- 1087 (1265)
Q Consensus 1015 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~------- 1087 (1265)
++.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 457999999999963 4589999999999999999999999999999999999999999999999988642
Q ss_pred ------CHHHHhcccEEEecCCCCCcc-cHHHHhccCC---CCCCH----HHHHHHHHHhchHHHHHhCCCCccccccCC
Q 000830 1088 ------NLKSLRKHIALVQQEPALFAT-SIYENILYGK---DGASE----GEVIEAAKLANAHSFISALPEGYSTKVGER 1153 (1265)
Q Consensus 1088 ------~l~~lR~~i~~VpQdp~LF~g-TIreNl~~g~---~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~ 1153 (1265)
....+|++++||||++.+|.. |++||+.++. ..... +++.++++..++.+.. ....
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCC
Confidence 135678899999999999975 9999997631 11122 2344445444443322 1345
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCE
Q 000830 1154 GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGK 1231 (1265)
Q Consensus 1154 G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ 1231 (1265)
...||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 56899999999999999999999999999999999999999999999875 47999999999999987 99999999999
Q ss_pred EEEecChhhhhhcCC
Q 000830 1232 IIEQGTHSSLVENED 1246 (1265)
Q Consensus 1232 Ive~Gt~~eLl~~~~ 1246 (1265)
+++.|+++++.+...
T Consensus 230 i~~~~~~~~~~~~~~ 244 (257)
T PRK10619 230 IEEEGAPEQLFGNPQ 244 (257)
T ss_pred EEEeCCHHHhhhCcc
Confidence 999999999976443
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=374.55 Aligned_cols=220 Identities=32% Similarity=0.503 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCCCChHH
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLDLKW 455 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~~ 455 (1265)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3589999999999999999999999999999999999984 6999999999998877788
Q ss_pred HhhheeEEccCCccc-cccHHHHhccCCCC----CCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 456 LRQQIGLVNQEPALF-ATTIRENILYGKDD----ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 456 ~r~~i~~v~Q~~~lf-~~ti~~ni~~~~~~----~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
+|+.|+|++|++.+| ..|++||+.++... .... ++.++++..+ +++..+......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQ-------LWDEVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcC-------CCcchhhhhcCCcccCCHHHH
Confidence 889999999999766 46999999876321 1111 2222222222 221112234556678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccCCc
Q 000830 606 ISNPN 610 (1265)
Q Consensus 606 ~~~~~ 610 (1265)
.+.+.
T Consensus 233 ~~~~~ 237 (250)
T PRK14247 233 FTNPR 237 (250)
T ss_pred HcCCc
Confidence 76543
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=369.14 Aligned_cols=207 Identities=39% Similarity=0.603 Sum_probs=172.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999964 359999999999999999999999999999999999999999999999999876443 467899
Q ss_pred EEccCCcccc-ccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 462 LVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
||+|++.+|. .|++||+.++... ...++..+ .+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 4999999876321 11111111 112223332 344445556678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
|++|||||||++||+.+...+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999875 38999999999998865 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=365.95 Aligned_cols=203 Identities=28% Similarity=0.472 Sum_probs=178.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++... ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 3689999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEecCCCCC-cccHHHHhccCC--CCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000830 1098 LVQQEPALF-ATSIYENILYGK--DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174 (1265)
Q Consensus 1098 ~VpQdp~LF-~gTIreNl~~g~--~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~ 1174 (1265)
||||++.+| ..|++||+.++. ...+++++.++++..++.+...+ ....||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 579999997642 12345677778888877665433 2357999999999999999999
Q ss_pred CCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1175 PEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1175 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999875 47899999999999976 9999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=382.85 Aligned_cols=214 Identities=30% Similarity=0.541 Sum_probs=183.6
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
..|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 46999999999963 46899999999999999999999999999999999999999999999999997754 457899
Q ss_pred cEEEecCCCCCc-ccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1096 IALVQQEPALFA-TSIYENILYGKD--GASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1096 i~~VpQdp~LF~-gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
++|+||++.+|. .|++||+.+... ..+..+ +.++++..+ +++..+++++ +||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~----~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-------LENKADAKVG----ELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchHhcCchh----hCCHHHHHHHHHH
Confidence 999999999886 699999975321 223332 223333333 3344555554 6999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
|||+.+|++|+|||||++||+.+.+.+++.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999975 47899999999999976 999999999999999999999763
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=385.22 Aligned_cols=227 Identities=28% Similarity=0.457 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCC-------CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCH
Q 000830 1017 TIELRGVHFSYPSRP-------EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~-------~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 1089 (1265)
.|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2468999999999999999999999999999999999999999999999999988864
Q ss_pred H---HHhcccEEEecCCC--CCc-ccHHHHhccC---CCCCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCC
Q 000830 1090 K---SLRKHIALVQQEPA--LFA-TSIYENILYG---KDGAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQ 1156 (1265)
Q Consensus 1090 ~---~lR~~i~~VpQdp~--LF~-gTIreNl~~g---~~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~ 1156 (1265)
. .+|++|+||||+|. |+. -|+.+|+..+ ..... .+.+.++++.+++.+ ..++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCcc
Confidence 3 57889999999994 554 4898888532 11122 234556666665532 12333 3457
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEE
Q 000830 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKII 1233 (1265)
Q Consensus 1157 LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Iv 1233 (1265)
||||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998754 7899999999999976 9999999999999
Q ss_pred EecChhhhhhcCCcHHHHHH
Q 000830 1234 EQGTHSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1234 e~Gt~~eLl~~~~g~f~~l~ 1253 (1265)
|.|++++++++....|.+.+
T Consensus 235 e~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred EECCHHHHhcCCCCHHHHHH
Confidence 99999999986666676543
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=370.47 Aligned_cols=204 Identities=36% Similarity=0.521 Sum_probs=172.2
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH----H
Q 000830 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS----L 1092 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~----l 1092 (1265)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 146899999999999999999999999999999999999999999999999998776432 4
Q ss_pred hcccEEEecCCCCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1093 RKHIALVQQEPALFAT-SIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1093 R~~i~~VpQdp~LF~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
|++++|+||+|.+|.+ |++||+.++.. ... ++++.++++..++ +........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL-----------GDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhcChhhcCHHHHHHH
Confidence 6789999999999976 99999987532 111 1234444444444 3334444568999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEE
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKI 1232 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~I 1232 (1265)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998764 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=378.44 Aligned_cols=213 Identities=31% Similarity=0.539 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCC-HHHHhccc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN-LKSLRKHI 1096 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-l~~lR~~i 1096 (1265)
|+++||+++|++ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 235899999999999999999999999999999999999999999999999998765 46788899
Q ss_pred EEEecCCC--CCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1097 ALVQQEPA--LFATSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1097 ~~VpQdp~--LF~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
+|+||+|. ++..|++||+.++.. ..+. +++.++++..++.++. ......||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHHHHH
Confidence 99999985 677899999987532 1222 3344555555554443 334467999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||+.+|+||||||||++||+.+...+++.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999875 4789999999999998899999999999999999999865
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=370.17 Aligned_cols=215 Identities=29% Similarity=0.481 Sum_probs=177.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++||+++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999642 14699999999999999999999999999999999999999999999999998654 356778899
Q ss_pred EEccCCcccc-ccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
||+|++.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 9999999985 699999987421 111211111 111222222 222233445568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999988778999999999999865 999999999999999988765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=360.06 Aligned_cols=223 Identities=36% Similarity=0.552 Sum_probs=189.9
Q ss_pred cEEEEeEEEECCCCCC---------------------CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 000830 381 HIEFKDVSFCYPSRPD---------------------VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~---------------------~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 439 (1265)
.|+++||++-|++++. ..-++|+||+++.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5888899888864321 1247899999999999999999999999999999999999999
Q ss_pred eEEECCeeCCCCChHHHh----hheeEEccCCccccc-cHHHHhccCCCCC------CHHHHHHHHHHhcHHHHHhcCcc
Q 000830 440 EILLDGNNIKGLDLKWLR----QQIGLVNQEPALFAT-TIRENILYGKDDA------TMEEITRAAKLSEAMSFISNLPE 508 (1265)
Q Consensus 440 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~ 508 (1265)
+|+++|.|+..++.++|| +++++|+|+.-|++- ||.||..||.+-. +.+...++.+..++.++-.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~---- 159 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD---- 159 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh----
Confidence 999999999999987764 579999999999976 9999999997532 2223344445555444433
Q ss_pred cccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-cc
Q 000830 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NA 585 (1265)
Q Consensus 509 g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~ 585 (1265)
..+.+||||+||||.|||||..+|+|||+|||+|||||--+...|+.|.++.+ +||+|+|||++++.- -.
T Consensus 160 -------~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 160 -------KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -------cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 44567999999999999999999999999999999999999999999887753 799999999999864 59
Q ss_pred CEEEEEeCCEEEEeeCcchhccCCchHHH
Q 000830 586 DVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1265)
Q Consensus 586 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1265)
|||..|++|+|+..||++|++.+|...|-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence 99999999999999999999988776664
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=375.75 Aligned_cols=220 Identities=32% Similarity=0.542 Sum_probs=184.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCC--CC
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~ 452 (1265)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 358999999999999999999999999999999999987 699999999998853 45
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCCC--C---HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHH
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA--T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1265)
...+|++++||+|++.+|..|++||+.++.... . .+++.++++..+ +..++++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAA-------VWDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhC-------CcchhhhhhCCCcccCCHHHHH
Confidence 667888999999999999889999999864311 1 112222222222 2223334456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeC-----------CE
Q 000830 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQG-----------RK 595 (1265)
Q Consensus 528 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~-----------G~ 595 (1265)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988778999999999998865 999999996 67
Q ss_pred EEEeeCcchhccCC
Q 000830 596 IVKTGSHEELISNP 609 (1265)
Q Consensus 596 i~~~g~~~~l~~~~ 609 (1265)
+++.|+.+++...+
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999987653
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=380.48 Aligned_cols=218 Identities=34% Similarity=0.526 Sum_probs=179.7
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH----hh
Q 000830 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQ 458 (1265)
Q Consensus 383 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~ 458 (1265)
.++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45688888853 458999999999999999999999999999999999999999999999999887765443 45
Q ss_pred heeEEccCCcccc-ccHHHHhccCCCC--CCH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 459 QIGLVNQEPALFA-TTIRENILYGKDD--ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
+++|++|++.+|+ .|++||+.++... ... +++.++++..+ ++........+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVG-----------LEGWEHKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CHhHhhCCcccCCHHHHHHHHH
Confidence 7999999999986 5999999875321 111 12222233222 3333445556899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
||||+.+|+||||||||++||+.+...+.+.|.++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998874 37999999999998865 999999999999999999998765
Q ss_pred CchHHH
Q 000830 609 PNSAYA 614 (1265)
Q Consensus 609 ~~~~~~ 614 (1265)
+...|.
T Consensus 252 ~~~~~~ 257 (269)
T cd03294 252 PANDYV 257 (269)
T ss_pred cCcHHH
Confidence 444443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=362.35 Aligned_cols=200 Identities=37% Similarity=0.569 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 382 IEFKDVSFCYPSRPD--VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
++++||+++|++..+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999975321 3599999999999999999999999999999999999999999999998 5
Q ss_pred eeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000830 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1265)
Q Consensus 460 i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 539 (1265)
|+|++|+|.+|+.|++||+.++.. ...++..++++..++.+++..+|.|+++.+++++.+||||||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998753 2345666777777888899999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHH-HHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCE
Q 000830 540 SILLLDEATSALDAESENSVQE-ALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1265)
Q Consensus 540 ~illlDE~ts~lD~~~~~~i~~-~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~ 595 (1265)
+++||||||++||+++.+.+.+ .+.+.. +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 455553 4799999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=376.73 Aligned_cols=223 Identities=30% Similarity=0.467 Sum_probs=189.3
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCC--CC
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKR--LN 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~ 1088 (1265)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999963 3589999999999999999999999999999999999985 48999999999864 44
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCC---CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKD---GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~---~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
...+|++++|+||+|.+|+.|++||+.++.. ..+ ++.+.++++.+++.+++.. .....+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999976421 111 2335566667776544332 2234556899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEe-----CCEEEEe
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIE-----SGKIIEQ 1235 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~-----~G~Ive~ 1235 (1265)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998778999999999999976 99999998 5999999
Q ss_pred cChhhhhhcCCcH
Q 000830 1236 GTHSSLVENEDGA 1248 (1265)
Q Consensus 1236 Gt~~eLl~~~~g~ 1248 (1265)
|+++++.+++...
T Consensus 236 ~~~~~~~~~~~~~ 248 (259)
T PRK14260 236 GVTTQIFSNPLDS 248 (259)
T ss_pred CCHHHHhcCCCCh
Confidence 9999997644433
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=373.88 Aligned_cols=222 Identities=23% Similarity=0.451 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH-Hhcc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS-LRKH 1095 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~ 1095 (1265)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999963 35899999999999999999999999999999999999999999999999998877665 4567
Q ss_pred cEEEecCCCCCcc-cHHHHhccCCCCCCH--HH---HHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1096 IALVQQEPALFAT-SIYENILYGKDGASE--GE---VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1096 i~~VpQdp~LF~g-TIreNl~~g~~~~sd--~e---i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
++|+||++.+|.+ |++||+.++...... .. .........+.++++.+ |++.........||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHH
Confidence 9999999999987 999999875321000 00 00000011123333333 4444445556789999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|++++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999998778999999999999976 99999999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=375.82 Aligned_cols=218 Identities=31% Similarity=0.472 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCC--CCCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIK--GLDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~--~~~~ 453 (1265)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 3599999999999999999999999999999999999987 4999999999986 4455
Q ss_pred HHHhhheeEEccCCccccc-cHHHHhccCCC--C--CCHHH----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChH
Q 000830 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKD--D--ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1265)
..+|++++|++|++.+|+. |+.||+.++.. . ...++ +.++++..+ +...+.......+.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA-------LWDEVKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcC-------CccchhhhhccChhhCCHH
Confidence 6778899999999999976 99999987531 1 01222 222222222 1111223345677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcc
Q 000830 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 525 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1265)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999999865 9999999999999999999
Q ss_pred hhccC
Q 000830 604 ELISN 608 (1265)
Q Consensus 604 ~l~~~ 608 (1265)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=373.74 Aligned_cols=218 Identities=32% Similarity=0.548 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT-----AGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--~~l 1089 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 35899999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--GA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|+.++||||+|.+|+.|++||+.++.. .. . ++.+.++++..++.+.+. ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 678999999999999999999999987521 11 1 123444455555543332 234556778999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999999987 899999999999999999998
Q ss_pred hhc
Q 000830 1242 VEN 1244 (1265)
Q Consensus 1242 l~~ 1244 (1265)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=390.53 Aligned_cols=219 Identities=32% Similarity=0.521 Sum_probs=188.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.++.+.+. .|++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 358999999999999999999999999999999999999999999999999987664 5789
Q ss_pred cEEEecCCCCCcc-cHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1096 IALVQQEPALFAT-SIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1096 i~~VpQdp~LF~g-TIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
++||+|++.||.. |++||+.++.. ..+. +++.++++..++.++.++. ..+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRK-----------PHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999999999975 99999998632 2232 3445556666655444333 357999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcC
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~ 1245 (1265)
|||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999988887653 6899999999999765 9999999999999999999999866
Q ss_pred CcHHH
Q 000830 1246 DGAYF 1250 (1265)
Q Consensus 1246 ~g~f~ 1250 (1265)
...|.
T Consensus 242 ~~~~~ 246 (377)
T PRK11607 242 TTRYS 246 (377)
T ss_pred ccHHH
Confidence 65553
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=376.31 Aligned_cols=222 Identities=27% Similarity=0.511 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCCC--Ch
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1265)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3589999999999999999999999999999999999985 799999999988643 23
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1265)
..+|+.++|++|++.+|+.|++||+.++.. ....++ +.++++..+ +.+...........+|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAA-------LWDETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CCcchhhhhcCChhhCCHHHHH
Confidence 456788999999999999999999987532 112222 222222221 1111123345667789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhc
Q 000830 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 528 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999865 9999999999999999999987
Q ss_pred cCCchH
Q 000830 607 SNPNSA 612 (1265)
Q Consensus 607 ~~~~~~ 612 (1265)
.++...
T Consensus 242 ~~~~~~ 247 (258)
T PRK14268 242 HNPREK 247 (258)
T ss_pred cCCCCH
Confidence 653333
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=372.32 Aligned_cols=216 Identities=27% Similarity=0.460 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH-hhhe
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1265)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 359999999999999999999999999999999999999999999999999887766543 5679
Q ss_pred eEEccCCccccc-cHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
+|++|++.+|++ |++||+.++.+. ...++..+ .+.+.+..+ |++........+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 999999875321 11111111 122333333 45555667778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 48999999999987765 99999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=355.68 Aligned_cols=178 Identities=39% Similarity=0.698 Sum_probs=166.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999753 23589999999999999999999999999999999999999999999999998766 667889999
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000830 1098 LVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177 (1265)
Q Consensus 1098 ~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1177 (1265)
|+||+|.+|+.|++||+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 357999999999999999999999
Q ss_pred EEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhccCEEEEEeCCEEEEec
Q 000830 1178 LLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1178 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~G 1236 (1265)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999987789999999999999889999999999998865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=376.96 Aligned_cols=226 Identities=27% Similarity=0.464 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH
Q 000830 1018 IELRGVHFSYPSR------PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS 1091 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~ 1091 (1265)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1346899999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcccEEEecCCC--CC-cccHHHHhccCCC---CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCC
Q 000830 1092 ---LRKHIALVQQEPA--LF-ATSIYENILYGKD---GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLS 1158 (1265)
Q Consensus 1092 ---lR~~i~~VpQdp~--LF-~gTIreNl~~g~~---~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1158 (1265)
+|++++|+||+|. ++ ..|++||+.++.. ... ++++.++++..++.+ .........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 6788999999983 44 4699999864311 111 223344444443321 22344566899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 000830 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQ 1235 (1265)
Q Consensus 1159 gGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~ 1235 (1265)
||||||++|||||+.+|++|||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998764 7899999999999975 999999999999999
Q ss_pred cChhhhhhcCCcHHHHHH
Q 000830 1236 GTHSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1236 Gt~~eLl~~~~g~f~~l~ 1253 (1265)
|++++++...+..+..+.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 999999874333344343
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=375.55 Aligned_cols=223 Identities=26% Similarity=0.449 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCCCC-HH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKRLN-LK 1090 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~~-l~ 1090 (1265)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999973 4689999999999999999999999999999999999986 6999999999987663 45
Q ss_pred HHhcccEEEecCCCCCcccHHHHhccCCC---CCCHHHHHH----HHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1091 SLRKHIALVQQEPALFATSIYENILYGKD---GASEGEVIE----AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1091 ~lR~~i~~VpQdp~LF~gTIreNl~~g~~---~~sd~ei~~----al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
.+|++++|+||+|.+|..|+++|+.++.. ..+++++.+ .++..++. ..+++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-------DAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC-------chhhhHhhCCcccCCHHHHH
Confidence 67899999999999999999999987531 134444332 23333332 22223455667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 9999999999999999999998
Q ss_pred hcCCcHH
Q 000830 1243 ENEDGAY 1249 (1265)
Q Consensus 1243 ~~~~g~f 1249 (1265)
+.+...+
T Consensus 251 ~~~~~~~ 257 (276)
T PRK14271 251 SSPKHAE 257 (276)
T ss_pred hCcCcHH
Confidence 7543333
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=370.06 Aligned_cols=214 Identities=29% Similarity=0.473 Sum_probs=178.2
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH---H
Q 000830 381 HIEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 456 (1265)
.++++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-hheeEEccCCccccc-cHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 457 R-QQIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 457 r-~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
| +.++|++|++.+|+. |++||+.++.. ....++..+ .+.+.+..+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 579999999999876 99999987421 111222111 111223222 344455667789999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEeeC
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 601 (1265)
||++.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999874 4899999999999999889999999999998875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=387.52 Aligned_cols=232 Identities=22% Similarity=0.391 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCC---cceEEECCeeCCCCChHHH
Q 000830 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGLDLKWL 456 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~~~~~~ 456 (1265)
-++++|++++|+.. ...++++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999642 2346999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----hheeEEccCC--ccccc-cHHHHhccCC---CCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 457 R----QQIGLVNQEP--ALFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 457 r----~~i~~v~Q~~--~lf~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
+ ++|+||+|+| .+++. |+.+|+.... ...+.++..+ +..++.+. ..|+++. ..++..+.+||||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~--~~~~~L~~-vgL~~~~-~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFE--ESVRMLDA-VKMPEAR-KRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHH-cCCCChH-HHhcCCcccCCHHHH
Confidence 3 4799999998 45553 8888775321 1122222221 11112222 2455443 336778899999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcc
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1265)
||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|+++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998854 8999999999999975 9999999999999999999
Q ss_pred hhccCCchHHHHH
Q 000830 604 ELISNPNSAYAAL 616 (1265)
Q Consensus 604 ~l~~~~~~~~~~~ 616 (1265)
++.+++...|.+.
T Consensus 248 ~i~~~p~~pyt~~ 260 (330)
T PRK09473 248 DVFYQPSHPYSIG 260 (330)
T ss_pred HHHhCCCCHHHHH
Confidence 9998776677653
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=374.93 Aligned_cols=221 Identities=30% Similarity=0.470 Sum_probs=189.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 1089 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 358999999999999999999999999999999999986 479999999999853 456
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCCC--C---CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKDG--A---SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~--~---sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
..+|++++|+||++.+|+.|++||+.++... . .++++.++++.+++.+.+.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999989999999875321 1 12345556666666554432 2344566899999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEe---------CCEEEE
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIE---------SGKIIE 1234 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~---------~G~Ive 1234 (1265)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||||++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999999876 99999998 899999
Q ss_pred ecChhhhhhcCCc
Q 000830 1235 QGTHSSLVENEDG 1247 (1265)
Q Consensus 1235 ~Gt~~eLl~~~~g 1247 (1265)
.|+++++.+++..
T Consensus 240 ~~~~~~~~~~~~~ 252 (264)
T PRK14243 240 FDRTEKIFNSPQQ 252 (264)
T ss_pred eCCHHHHHhCCCc
Confidence 9999999864443
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=380.03 Aligned_cols=219 Identities=26% Similarity=0.496 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCC--CCChHHHhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQ 458 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 458 (1265)
.|+++|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 245999999999999999999999999999999999999999999999999984 334567888
Q ss_pred heeEEccCC--ccccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 459 QIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 459 ~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
.++|++|+| .+|+.|++||+.++... .+.++..+.. . +.++.+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~---~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV--D---NALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHH--H---HHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 57888999999875321 2222221111 1 111221 23334456678999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEeeCcchhccC
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999988753 899999999999987 4999999999999999999998764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=384.54 Aligned_cols=218 Identities=27% Similarity=0.477 Sum_probs=182.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
..|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 35999999999963 45999999999999999999999999999999999999999999999999987654 457889
Q ss_pred eeEEccCCcccc-ccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 460 IGLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
||||||++.++. .|++||+.+... ..+..+..+. ..++.+.+ .+++..++.+ .+||||||||++|||||+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~--~~~~l~~~-~l~~~~~~~~----~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL--VPPLLEFA-KLENKADAKV----GELSGGMKRRLTLARALV 154 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHc-CCchHhcCch----hhCCHHHHHHHHHHHHHh
Confidence 999999999986 499999985321 1222222221 11222222 3444445444 579999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999885 48999999999999976 999999999999999999998643
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=377.35 Aligned_cols=228 Identities=28% Similarity=0.422 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCC------CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChH-
Q 000830 382 IEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK- 454 (1265)
Q Consensus 382 i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~- 454 (1265)
|+++||+|+|++. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 135699999999999999999999999999999999999999999999999999877654
Q ss_pred --HHhhheeEEccCCc--ccc-ccHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCccccc-ccccCCCCCCChHH
Q 000830 455 --WLRQQIGLVNQEPA--LFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQ 525 (1265)
Q Consensus 455 --~~r~~i~~v~Q~~~--lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq 525 (1265)
.+|+.|+||+|++. ++. .|++||+.++.. ....++.. ..+.+.++.+ |++ ......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQK-----ARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 36778999999983 444 599999975421 11111111 1122233333 343 23456778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCc
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1265)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998753 8999999999999975 999999999999999999
Q ss_pred chhccCCchHHHHH
Q 000830 603 EELISNPNSAYAAL 616 (1265)
Q Consensus 603 ~~l~~~~~~~~~~~ 616 (1265)
+++....+..++.+
T Consensus 236 ~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 236 AQLLSFKHPAGRNL 249 (265)
T ss_pred HHHcCCCCHHHHHH
Confidence 99987534444444
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=370.36 Aligned_cols=217 Identities=33% Similarity=0.561 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCC--CHHHHhcc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL--NLKSLRKH 1095 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~--~l~~lR~~ 1095 (1265)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 3589999999999999999999999999999999999999999999999998764 34567889
Q ss_pred cEEEecCCCCCc-ccHHHHhccCCC---CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000830 1096 IALVQQEPALFA-TSIYENILYGKD---GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV 1171 (1265)
Q Consensus 1096 i~~VpQdp~LF~-gTIreNl~~g~~---~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARAL 1171 (1265)
++|+||++.+|. .|+++|+.++.. ..+.++..+. +.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQ-----ARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999999886 599999976421 1222222111 12233332 444444445568999999999999999
Q ss_pred ccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1172 LKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1172 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
+++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999875 47899999999999975 999999999999999999998764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=375.66 Aligned_cols=223 Identities=28% Similarity=0.475 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 1089 (1265)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 6999999999973 358999999999999999999999999999999999987 699999999999853 355
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--CCCHH-----HHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--GASEG-----EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~sd~-----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|++++|+||+|.+|..|++||+.++.. +.+++ .+.++++..++. +++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 22221 223333333322 1233334556678999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999876 999999999999999999999
Q ss_pred hhcCCcHH
Q 000830 1242 VENEDGAY 1249 (1265)
Q Consensus 1242 l~~~~g~f 1249 (1265)
.+++...|
T Consensus 254 ~~~~~~~~ 261 (271)
T PRK14238 254 FSNPSDKR 261 (271)
T ss_pred HcCCCCHH
Confidence 86544333
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=368.03 Aligned_cols=211 Identities=25% Similarity=0.455 Sum_probs=175.5
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
|+++||+++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 259999999999999999999999999999999999999999999999999875 456678899
Q ss_pred eEEccCCccccc-cHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 461 GLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
+|++|++.+|+. |++||+.+... ....++..+ .+.+.++.+ |++......+.+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999986 99999976422 112222111 111223322 34445566778899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998875 48999999999998865 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=376.59 Aligned_cols=215 Identities=31% Similarity=0.495 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 23589999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCCC--CCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000830 1097 ALVQQEPA--LFATSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIA 1168 (1265)
Q Consensus 1097 ~~VpQdp~--LF~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLA 1168 (1265)
+|+||+|. ++..|+++|+.++.. ..+. +++.++++..++.++. .....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999994 445689999977532 1222 3445555555554432 234467999999999999
Q ss_pred HHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhh
Q 000830 1169 RAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1169 RALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||||++|++|++++.|+++++.+
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999998753 789999999999998899999999999999999999876
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=375.41 Aligned_cols=221 Identities=26% Similarity=0.461 Sum_probs=190.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46899999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEecCCCCCcc-cHHHHhccCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGKDG----------ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~~~----------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrla 1166 (1265)
|+||++.+|.+ |++||+.++... ..++++.++++..++.++.+ .....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999998876 999999875211 11234556666666654433 334579999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT- 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence 9999999999999999999999999999999999875 47899999999999875 99999999999999999999875
Q ss_pred CCcHHHHHHH
Q 000830 1245 EDGAYFKLIN 1254 (1265)
Q Consensus 1245 ~~g~f~~l~~ 1254 (1265)
...+.+.+.
T Consensus 228 -~~~~~~~~~ 236 (255)
T PRK11231 228 -PGLLRTVFD 236 (255)
T ss_pred -HHHHHHHhC
Confidence 344555553
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=383.85 Aligned_cols=229 Identities=27% Similarity=0.480 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC---CcEEEECCcccCCCCHHHH
Q 000830 1017 TIELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT---AGKVMVDGIDIKRLNLKSL 1092 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~~~l~~l 1092 (1265)
.++++|++++|+.+. ...+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+..++.+.+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996432 246899999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----cccEEEecCC--CCCc-ccHHHHhccC---CCCCCHHH----HHHHHHHhchHHHHHhCCCCccccccCCCCCCC
Q 000830 1093 R----KHIALVQQEP--ALFA-TSIYENILYG---KDGASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLS 1158 (1265)
Q Consensus 1093 R----~~i~~VpQdp--~LF~-gTIreNl~~g---~~~~sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1158 (1265)
| ++|+||||+| .++. -|+.+|+... ....+.++ +.+.++.++ +|++. ..++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChH-HHhcCCcccCC
Confidence 3 4899999999 4554 4777776431 11223322 333344333 33332 22456678899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 000830 1159 GGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQ 1235 (1265)
Q Consensus 1159 gGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~ 1235 (1265)
||||||++|||||+.+|++||+|||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||||+||.+|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998864 7899999999999975 999999999999999
Q ss_pred cChhhhhhcCCcHHHHHH
Q 000830 1236 GTHSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1236 Gt~~eLl~~~~g~f~~l~ 1253 (1265)
|+++++.+++...|.+.+
T Consensus 244 g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGL 261 (330)
T ss_pred CCHHHHHhCCCCHHHHHH
Confidence 999999987777777643
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=370.78 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH-Hhcc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS-LRKH 1095 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~ 1095 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 35899999999999999999999999999999999999999999999999998887654 6788
Q ss_pred cEEEecCCCCCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000830 1096 IALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174 (1265)
Q Consensus 1096 i~~VpQdp~LF~g-TIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~ 1174 (1265)
++|+||++.+|.+ |+++|+.++....+.++..+.++ +.++.++ +++.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 99999987532222222222211 1112111 111112234567999999999999999999
Q ss_pred CCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1175 PEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1175 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999875 47999999999998765 99999999999999999999975
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=369.47 Aligned_cols=206 Identities=34% Similarity=0.523 Sum_probs=174.8
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
|+++|++++|++... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 478999999974211 469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEecCCCCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALFA-TSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
+||||+|.+|. .|++||+.++.. ..+ ++++.++++..++.++..+ ...+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHH
Confidence 99999999987 699999976421 111 2345566666665544433 33579999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhc-cCEEEEEe--CCEEEEecChh
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIE--SGKIIEQGTHS 1239 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~--~G~Ive~Gt~~ 1239 (1265)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999874 37899999999998865 99999999 79999988643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=373.98 Aligned_cols=227 Identities=30% Similarity=0.478 Sum_probs=190.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCCC--CH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKRL--NL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~l 1089 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 3589999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--GA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
...|+.++|+||+|.+|+.|++||+.++.. .. . ++.+.++++..++.+. +.+.....+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHH
Confidence 677889999999999999999999987532 11 1 2234445555444322 22345566778999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++||||++.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999975 999999999999999999999
Q ss_pred hhcCCcHHHHHH
Q 000830 1242 VENEDGAYFKLI 1253 (1265)
Q Consensus 1242 l~~~~g~f~~l~ 1253 (1265)
.+++...+.+.+
T Consensus 236 ~~~~~~~~~~~~ 247 (253)
T PRK14261 236 FENPHEELTENY 247 (253)
T ss_pred HhCCCcHHHHHH
Confidence 865444455444
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=378.44 Aligned_cols=219 Identities=33% Similarity=0.547 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCC----CHHH
Q 000830 1018 IELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL----NLKS 1091 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~l~~ 1091 (1265)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 13689999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcccEEEecCC--CCCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhCCCCcc-ccccCCCCCCChhHHHHHH
Q 000830 1092 LRKHIALVQQEP--ALFATSIYENILYGKD--GASEGEVIEAAKLANAHSFISALPEGYS-TKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1092 lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~LSgGQkQrla 1166 (1265)
+|++|+|+||+| .+|+.|++||+.++.. ..+.++..+.+ .++++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 889999999998 6888999999986421 22333322211 1222222 333 1234455679999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998754 7899999999999865 99999999999999999999876
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=385.15 Aligned_cols=229 Identities=25% Similarity=0.400 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC----CCCcEEEECCcccCCCCHHH
Q 000830 1017 TIELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD----PTAGKVMVDGIDIKRLNLKS 1091 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~----p~~G~I~idG~di~~~~l~~ 1091 (1265)
.++++||+++|+.... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975322 358999999999999999999999999999999999998 48999999999999888766
Q ss_pred Hh----cccEEEecCCC--CCc-ccHHHHh----ccCCCC---CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCC
Q 000830 1092 LR----KHIALVQQEPA--LFA-TSIYENI----LYGKDG---ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQL 1157 (1265)
Q Consensus 1092 lR----~~i~~VpQdp~--LF~-gTIreNl----~~g~~~---~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~L 1157 (1265)
+| +.|+||||+|. ++. -|+.+|+ ...... ...+++.++++.+++.+... .......+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhC
Confidence 54 36999999995 442 2555544 321111 11244566666666643211 123455689
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 000830 1158 SGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIE 1234 (1265)
Q Consensus 1158 SgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive 1234 (1265)
|||||||++|||||+.+|++||+||||++||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||.+|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 7899999999999964 99999999999999
Q ss_pred ecChhhhhhcCCcHHHHHH
Q 000830 1235 QGTHSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1235 ~Gt~~eLl~~~~g~f~~l~ 1253 (1265)
.|+++++++++...|.+.+
T Consensus 235 ~g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred ECCHHHHhhCCCChHHHHH
Confidence 9999999986666676544
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=366.97 Aligned_cols=203 Identities=35% Similarity=0.601 Sum_probs=173.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999974 3589999999999999999999999999999999999999999999999999765543 57899
Q ss_pred EEecCCCCCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFA-TSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~-gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||++.+|. .|++||+.++.. ..+. +++.++++..++.++... ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999985 699999986421 1222 234455555555544333 345799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 7899999999999876 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=370.68 Aligned_cols=218 Identities=28% Similarity=0.462 Sum_probs=191.1
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH
Q 000830 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456 (1265)
Q Consensus 377 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 456 (1265)
...+.|+++|+++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------
Confidence 345679999999952 3589999999999999999999999999999999999999999999998
Q ss_pred hhheeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 457 RQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 457 r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
.|+|++|++.+|+.|++||+.++... ...++.++++..++.+.+..+|.++++.+++.+.+||||||||++|||||+
T Consensus 99 --~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 99 --RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred --EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 39999999999999999999986432 233445556666777888889999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccCCchHHH
Q 000830 537 KNPSILLLDEATSALDAESENSVQEAL-DRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1265)
.+|++|||||||++||+.+...+.+.+ ..+.+++|+|++||+++.+..||+|++|++|++++.|+++++... ...|.
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~ 253 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFS 253 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHH
Confidence 999999999999999999999888754 555568999999999999988999999999999999999998764 33443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=371.88 Aligned_cols=212 Identities=29% Similarity=0.483 Sum_probs=179.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH-Hhccc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS-LRKHI 1096 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~i 1096 (1265)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999973 35899999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEecCCCCCcc-cHHHHhccCCCCC--CHHH-HHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000830 1097 ALVQQEPALFAT-SIYENILYGKDGA--SEGE-VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~~~~--sd~e-i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALl 1172 (1265)
+|+||++.+|.. |+++|+.++.... ..++ ..++++..+ +++........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999998653221 1122 122222221 1222334455679999999999999999
Q ss_pred cCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1173 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998764 7899999999999986 9999999999999999999984
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=377.19 Aligned_cols=217 Identities=29% Similarity=0.502 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++||+|+|++....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334589999999999999999999999999999999999999999999999999877777888899
Q ss_pred eEEccCCc--cccccHHHHhccCCC--CCCHHHH----HHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 461 GLVNQEPA--LFATTIRENILYGKD--DATMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~--~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
+||+|+|. ++..|+.|||.++.. ..+.+++ .++++..++ ..........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNM-----------LDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----------HhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 667799999987632 2233332 222333222 2223445678999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|||+++|++|||||||++||+.+...+.+.|.++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988753 8999999999999988999999999999999999998764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=367.86 Aligned_cols=205 Identities=29% Similarity=0.487 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH---Hh
Q 000830 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS---LR 1093 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 1093 (1265)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 146899999999999999999999999999999999999999999999999998877554 34
Q ss_pred -cccEEEecCCCCCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1094 -KHIALVQQEPALFA-TSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1094 -~~i~~VpQdp~LF~-gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
++++|+||+|.+|. .|++||+.++.. ..+. +++.++++..+ ++.........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVG-----------LEHRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHH
Confidence 68999999999985 599999976321 1121 23334444444 43334444567999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEEE
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKII 1233 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~Iv 1233 (1265)
+|||||+++|++|||||||++||+++...+.+.|++..+ ++|+|+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999998753 78999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=372.53 Aligned_cols=224 Identities=32% Similarity=0.524 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 1089 (1265)
.++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 358999999999999999999999999999999999875 389999999999875 346
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--GA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|++++|+||+|.+|.+|++||+.++.. .. + ++++.++++.+++.+++..+ ....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678999999999999999999999986521 11 1 23455667777776554422 2345568999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999887 899999999999999999999
Q ss_pred hhcCCcHHH
Q 000830 1242 VENEDGAYF 1250 (1265)
Q Consensus 1242 l~~~~g~f~ 1250 (1265)
...+.+.|.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PRK14266 233 FINPKDKRT 241 (250)
T ss_pred HhCCCChHH
Confidence 765555543
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=369.11 Aligned_cols=208 Identities=36% Similarity=0.498 Sum_probs=172.4
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChH----HH
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK----WL 456 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~----~~ 456 (1265)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997421 14699999999999999999999999999999999999999999999999998876643 24
Q ss_pred hhheeEEccCCccccc-cHHHHhccCCCCC--CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 457 RQQIGLVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 457 r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
+++++|++|++.+|.. |++||+.++.... ...+.. ..+.+.+..+ |++......+.+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999999986 9999998864211 111111 1122233333 3444456667899999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEE
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i 596 (1265)
||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 8999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=374.76 Aligned_cols=220 Identities=31% Similarity=0.513 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC--C---CcceEEECCeeCCC--CCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKG--LDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~ 453 (1265)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 359999999999999999999999999999999999997 3 59999999999863 345
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCCC---CHHHH----HHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA---TMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
..+|+.++|++|++.+|+.|++||+.++.... ..++. .++++..+ +.+.+.+.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA-------LWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcC-------CchhhhhhhhCCcccCCHHHH
Confidence 57788999999999999999999998763211 12222 12222222 211122345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999998
Q ss_pred ccCCc
Q 000830 606 ISNPN 610 (1265)
Q Consensus 606 ~~~~~ 610 (1265)
..++.
T Consensus 242 ~~~~~ 246 (259)
T PRK14274 242 FSNPD 246 (259)
T ss_pred hhCCC
Confidence 76533
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.57 Aligned_cols=222 Identities=30% Similarity=0.488 Sum_probs=182.3
Q ss_pred cccEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCC----C-
Q 000830 1015 EGTIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKR----L- 1087 (1265)
Q Consensus 1015 ~g~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----~- 1087 (1265)
.+.|+++|++++|++.+ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999997432 1358999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhcccEEEecCC--CCCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhCCCCcc-ccccCCCCCCChhHH
Q 000830 1088 NLKSLRKHIALVQQEP--ALFATSIYENILYGKD--GASEGEVIEAAKLANAHSFISALPEGYS-TKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1088 ~l~~lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~LSgGQk 1162 (1265)
+...+|++++|+||+| .+|..|++||+.++.. ....++..+.+ .+.++.+ |+. ........+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 4567888999999998 4778899999987532 22333322211 1122221 221 123345568999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHS 1239 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1239 (1265)
||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998753 7899999999999865 9999999999999999999
Q ss_pred hhhh
Q 000830 1240 SLVE 1243 (1265)
Q Consensus 1240 eLl~ 1243 (1265)
++.+
T Consensus 237 ~~~~ 240 (289)
T PRK13645 237 EIFS 240 (289)
T ss_pred HHhc
Confidence 8865
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=372.40 Aligned_cols=219 Identities=32% Similarity=0.496 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCCC--CH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKRL--NL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~l 1089 (1265)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3589999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD--GA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|++++|+||++.+|..|++||+.++.. .. + .+++.++++.+++.+.+. .........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 567899999999999999999999986421 11 1 133455666666543322 223345668999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999876 999999999999999999999
Q ss_pred hhcC
Q 000830 1242 VENE 1245 (1265)
Q Consensus 1242 l~~~ 1245 (1265)
....
T Consensus 234 ~~~~ 237 (251)
T PRK14270 234 FLEP 237 (251)
T ss_pred hcCC
Confidence 7643
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=378.80 Aligned_cols=216 Identities=33% Similarity=0.558 Sum_probs=181.6
Q ss_pred cEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCC----CHH
Q 000830 1017 TIELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL----NLK 1090 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~l~ 1090 (1265)
.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 14689999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcccEEEecCC--CCCcccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhCCCCccc-cccCCCCCCChhH
Q 000830 1091 SLRKHIALVQQEP--ALFATSIYENILYGKD--GASEGE----VIEAAKLANAHSFISALPEGYST-KVGERGVQLSGGQ 1161 (1265)
Q Consensus 1091 ~lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~Gldt-~vge~G~~LSgGQ 1161 (1265)
..|+.++|+||+| .+|..|++||+.++.. ..+.++ +.++++.. |+++ .......+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-----------GLSEDLISKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCChhHhhCCcccCCHHH
Confidence 6788999999998 5888899999976421 223222 23333333 3432 2344456899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHS 1239 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1239 (1265)
|||++|||||+++|++|||||||++||+.+...+.+.|++.. ++.|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 47899999999999865 9999999999999999999
Q ss_pred hhhh
Q 000830 1240 SLVE 1243 (1265)
Q Consensus 1240 eLl~ 1243 (1265)
++.+
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 9875
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=369.87 Aligned_cols=211 Identities=38% Similarity=0.593 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++ .++++|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 578999999973 358999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEecCCCCCcc-cHHHHhccCCC--CC----CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGKD--GA----SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~~--~~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||++.+|.+ |+++|+.++.. .. .++++.++++..++.++....| .+||+|||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999976421 11 1345566666666665554433 5799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998764 7899999999999876 999999999999999999998764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=371.05 Aligned_cols=216 Identities=30% Similarity=0.516 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccC------CCCHHH
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIK------RLNLKS 1091 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~------~~~l~~ 1091 (1265)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 35899999999999999999999999999999999999999999999999873 123456
Q ss_pred HhcccEEEecCCCCCcc-cHHHHhccCC---CCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1092 LRKHIALVQQEPALFAT-SIYENILYGK---DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1092 lR~~i~~VpQdp~LF~g-TIreNl~~g~---~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
+|++++|+||+|.+|.+ |++||+.++. .....++..+ .+.++++.+ |++........+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 78899999999999975 9999996421 1122222111 122333333 34444444456899999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||++++|++|||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998754 7899999999999976 99999999999999999998865
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=371.23 Aligned_cols=204 Identities=32% Similarity=0.466 Sum_probs=178.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999963 35899999999999999999999999999999999999999999999998763 567899
Q ss_pred EEEecCCCCCc-ccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000830 1097 ALVQQEPALFA-TSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNP 1175 (1265)
Q Consensus 1097 ~~VpQdp~LF~-gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p 1175 (1265)
+|+||++.+|. .|++||+.++.....++++.++++..++.++. .....+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 69999998754322345666677766665443 3344689999999999999999999
Q ss_pred CEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 000830 1176 EILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHS 1239 (1265)
Q Consensus 1176 ~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~ 1239 (1265)
++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999874 37899999999999865 9999999999999988765
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=364.03 Aligned_cols=203 Identities=26% Similarity=0.456 Sum_probs=172.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++|+|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999964 35999999999999 99999999999999999999999999999999999987766 67788999
Q ss_pred EEccCCccccc-cHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 462 LVNQEPALFAT-TIRENILYGKD--DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
|++|++.+|.. |++||+.+... .... +++.++++..++.+ .......+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD-----------RAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 99999999986 99999986421 1111 22233333333221 2233456899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
|+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988777999999999999865 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=363.94 Aligned_cols=199 Identities=33% Similarity=0.543 Sum_probs=167.6
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeE
Q 000830 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1265)
Q Consensus 383 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1265)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 458999999999999999999999999999999999999999999999998753 456778999
Q ss_pred EccCC--ccccccHHHHhccCCCCCC--HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 463 VNQEP--ALFATTIRENILYGKDDAT--MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 463 v~Q~~--~lf~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
++|++ .+++.|++||+.++.+... .+++.++++..++ +........+||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDL-----------YALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCC-----------chhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4677899999988643221 2233444443333 2223445568999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~ 597 (1265)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999998874 58999999999999875 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=390.67 Aligned_cols=209 Identities=34% Similarity=0.540 Sum_probs=173.4
Q ss_pred ccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH----hhheeEEccCCccccc-
Q 000830 398 AIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL----RQQIGLVNQEPALFAT- 472 (1265)
Q Consensus 398 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~- 472 (1265)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ |++++||+|++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988876554 3579999999999975
Q ss_pred cHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 000830 473 TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550 (1265)
Q Consensus 473 ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~ 550 (1265)
|++||+.++... ...++..+ .+.+.+..+ |++........+||||||||++|||||+.+|++||||||||+
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 999999986321 11111111 111222222 333344556678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCchHH
Q 000830 551 LDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1265)
Q Consensus 551 lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1265)
||+.+...+++.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 99999999999998874 48999999999999865 99999999999999999999987654444
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=376.16 Aligned_cols=227 Identities=30% Similarity=0.478 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChH---HHh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLR 457 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r 457 (1265)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 4589999999999999999999999999999999999999999999999998766543 357
Q ss_pred hheeEEccCCccccc-cHHHHhccCCCC---CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 458 QQIGLVNQEPALFAT-TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
++++|++|++.+|++ |+.||+.++... ....+... + +.+.+..+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~--~---~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS--T---VMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH--H---HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999986 999999875211 11111111 1 11122222 2333344556789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 236 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPD 236 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCc
Confidence 99999999999999999999999999999998753 7999999999999876 99999999999999999999886544
Q ss_pred hHHHHHH
Q 000830 611 SAYAALV 617 (1265)
Q Consensus 611 ~~~~~~~ 617 (1265)
..+..+.
T Consensus 237 ~~~~~~~ 243 (269)
T PRK11831 237 PRVRQFL 243 (269)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=366.26 Aligned_cols=201 Identities=35% Similarity=0.577 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHH---HHhc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK---SLRK 1094 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR~ 1094 (1265)
|+++|++++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24689999999999999999999999999999999999999999999999999877643 4688
Q ss_pred ccEEEecCCCCCc-ccHHHHhccCCC------CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1095 HIALVQQEPALFA-TSIYENILYGKD------GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1095 ~i~~VpQdp~LF~-gTIreNl~~g~~------~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
+++|+||+|.+|. .|++||+.++.. ...+++++++++..++.+.....| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 699999976421 112345667777777665544332 4799999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCE
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGK 1231 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ 1231 (1265)
||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 47899999999999986 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=374.62 Aligned_cols=219 Identities=31% Similarity=0.491 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCC--CCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1265)
.|+++|++|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999963 359999999999999999999999999999999999865 799999999999864 334
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCCC---CH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA---TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
..++++++|++|++.+|++|++||+.++.... .. +.+.++++..+ +..+........+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA-------LWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcC-------CCcchHHHHhcCcccCCHHHH
Confidence 56788999999999999999999998753211 11 11222222221 111122334567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999998865 999999999999999999988
Q ss_pred ccCC
Q 000830 606 ISNP 609 (1265)
Q Consensus 606 ~~~~ 609 (1265)
..++
T Consensus 251 ~~~~ 254 (268)
T PRK14248 251 FTSP 254 (268)
T ss_pred HhCC
Confidence 7653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=370.11 Aligned_cols=216 Identities=26% Similarity=0.493 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 45999999999999999999999999999999999999999999999999987766544 45899
Q ss_pred EEccCCccc-cccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 462 LVNQEPALF-ATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 462 ~v~Q~~~lf-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
|++|++.++ ..|++||+.++... ....+..+ .+.+.+..+ |++......+.+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 56999999875321 12221111 122334333 455556677789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 48999999999999988999999999999999998887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=370.77 Aligned_cols=219 Identities=33% Similarity=0.511 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCC--------
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-------- 452 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-------- 452 (1265)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3889999999963 35999999999999999999999999999999999999999999999999986532
Q ss_pred hHHHhhheeEEccCCcccc-ccHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHH
Q 000830 453 LKWLRQQIGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1265)
...+|++++||+|++.+|+ .|++||+.++.. ....++..+. +.+.++.+ |++......+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3457789999999999886 599999986421 1122221111 12233333 34444556778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhc
Q 000830 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 529 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988754 8999999999999876 9999999999999999999987
Q ss_pred cCC
Q 000830 607 SNP 609 (1265)
Q Consensus 607 ~~~ 609 (1265)
+.+
T Consensus 233 ~~~ 235 (250)
T PRK11264 233 ADP 235 (250)
T ss_pred cCC
Confidence 653
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=375.97 Aligned_cols=221 Identities=30% Similarity=0.537 Sum_probs=187.5
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCC--CC
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKR--LN 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~ 1088 (1265)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 46999999999963 358999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCC-----CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKD-----GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~-----~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
...+|++++||||++.+|..|++||+.++.. ...++++.++++..++...+. ........+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 5678899999999999998999999986421 112345666666666543322 1234455689999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEE-EEeCCEEEEecChhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQIS-VIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~-vl~~G~Ive~Gt~~eL 1241 (1265)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5799999999999998
Q ss_pred hhcCC
Q 000830 1242 VENED 1246 (1265)
Q Consensus 1242 l~~~~ 1246 (1265)
.++..
T Consensus 268 ~~~~~ 272 (285)
T PRK14254 268 FENPE 272 (285)
T ss_pred HhCcC
Confidence 76433
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=372.39 Aligned_cols=220 Identities=34% Similarity=0.573 Sum_probs=183.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCC--CC
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 452 (1265)
+.|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999973 3589999999999999999999999999999999999863 69999999999864 34
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCCC---CH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA---TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
...+|+.++||+|++.+|+.|++||+.++.... .. +++.++++..++ .+++.......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAAL-------WDEVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-------chhhHHHHhcCCCCCCHHH
Confidence 556788999999999999999999998763211 11 122222222222 1222234556778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcch
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1265)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998865 99999999999999999998
Q ss_pred hccCC
Q 000830 605 LISNP 609 (1265)
Q Consensus 605 l~~~~ 609 (1265)
+...+
T Consensus 232 ~~~~~ 236 (250)
T PRK14240 232 LFTNP 236 (250)
T ss_pred HHhCC
Confidence 87543
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=387.70 Aligned_cols=211 Identities=29% Similarity=0.466 Sum_probs=172.7
Q ss_pred CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCe----eCCCCChHHHh----hheeEEccCCc
Q 000830 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGN----NIKGLDLKWLR----QQIGLVNQEPA 468 (1265)
Q Consensus 397 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~----~~~~~~~~~~r----~~i~~v~Q~~~ 468 (1265)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|. ++...+...++ ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 56666655443 57999999999
Q ss_pred ccc-ccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 000830 469 LFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545 (1265)
Q Consensus 469 lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlD 545 (1265)
+|+ .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~-----~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRK-----RVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 998 5999999987421 12221111 111222222 2333344556789999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCchHHH
Q 000830 546 EATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614 (1265)
Q Consensus 546 E~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 614 (1265)
||||+||+.+...+++.|.++.+ ++|+|+|||+++++.. ||+|++|++|++++.|++++++.++...|.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999999988753 8999999999999754 999999999999999999999876544444
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=374.02 Aligned_cols=227 Identities=31% Similarity=0.479 Sum_probs=192.0
Q ss_pred CCcccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccC--
Q 000830 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIK-- 1085 (1265)
Q Consensus 1013 ~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~-- 1085 (1265)
+..+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred CCCceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 34578999999999973 3589999999999999999999999999999999999875 7999999998874
Q ss_pred --CCCHHHHhcccEEEecCCCCCcccHHHHhccCCC--C-----CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCC
Q 000830 1086 --RLNLKSLRKHIALVQQEPALFATSIYENILYGKD--G-----ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQ 1156 (1265)
Q Consensus 1086 --~~~l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~ 1156 (1265)
..+...+|++++|+||++.+|.+|++||+.++.. . ..++++.++++.+++.+. +.+........
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~ 161 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFN 161 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCccc
Confidence 3345678899999999999999999999986521 1 113456666666665432 22334555678
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 000830 1157 LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQ 1235 (1265)
Q Consensus 1157 LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~ 1235 (1265)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999998777899999999999975 999999999999999
Q ss_pred cChhhhhhcCCcHH
Q 000830 1236 GTHSSLVENEDGAY 1249 (1265)
Q Consensus 1236 Gt~~eLl~~~~g~f 1249 (1265)
|+++++..+....|
T Consensus 242 g~~~~~~~~~~~~~ 255 (265)
T PRK14252 242 GATDTIFIKPKNKQ 255 (265)
T ss_pred CCHHHHHhCCCCHH
Confidence 99999975443333
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=372.94 Aligned_cols=219 Identities=31% Similarity=0.519 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCC---------
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD--------- 452 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--------- 452 (1265)
|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999963 35999999999999999999999999999999999999999999999999986543
Q ss_pred ----hHHHhhheeEEccCCcccc-ccHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChH
Q 000830 453 ----LKWLRQQIGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1265)
Q Consensus 453 ----~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1265)
...+|+.++|++|++.+|. .|+.||+.++.. ....++..+ .+.+.+..+ |++......+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2466888999999999886 699999987521 111111111 122334333 3444566677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeC
Q 000830 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 525 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 601 (1265)
||||++|||||+++|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 8999999999999865 99999999999999999
Q ss_pred cchhccCCc
Q 000830 602 HEELISNPN 610 (1265)
Q Consensus 602 ~~~l~~~~~ 610 (1265)
++++.+.+.
T Consensus 231 ~~~~~~~~~ 239 (252)
T TIGR03005 231 PDEIFRQPK 239 (252)
T ss_pred HHHHhcCCC
Confidence 999876543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=366.48 Aligned_cols=209 Identities=29% Similarity=0.501 Sum_probs=172.9
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH---Hh
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1265)
++++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 246999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -hheeEEccCCccccc-cHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 458 -QQIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 458 -~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
+.++||+|++.+|+. |++||+.++.. .....+..+ .+.+.+..+ |++......+.+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 679999999999964 99999987421 111111111 111223332 3444456667889999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEE
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIV 597 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 597 (1265)
||+.+|++|||||||++||++++..+.+.|.++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998875 379999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.55 Aligned_cols=217 Identities=25% Similarity=0.461 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH-Hhcc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS-LRKH 1095 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~ 1095 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999963 46899999999999999999999999999999999999999999999999998877644 5789
Q ss_pred cEEEecCCCCCcc-cHHHHhccCCC---CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000830 1096 IALVQQEPALFAT-SIYENILYGKD---GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV 1171 (1265)
Q Consensus 1096 i~~VpQdp~LF~g-TIreNl~~g~~---~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARAL 1171 (1265)
++|+||++.+|.+ |++||+.++.. ..+.++.. ..+.++++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999999875 99999986421 11222211 1233445544 455555566678999999999999999
Q ss_pred ccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1172 LKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1172 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
+++|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998875 47899999999988765 99999999999999999999875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=369.96 Aligned_cols=212 Identities=30% Similarity=0.503 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH-Hhhhe
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQI 460 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 460 (1265)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999973 35999999999999999999999999999999999999999999999999998777654 46789
Q ss_pred eEEccCCccccc-cHHHHhccCCCCC--CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
+|++|++.+|+. |++||+.++.... ..++.. . +.+..+ ++++........+||||||||++|||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~---~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP-----D---EIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHH-----H---HHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 9999998764221 111110 1 111111 112333456677899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
+|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999988753 7999999999999986 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=367.13 Aligned_cols=211 Identities=35% Similarity=0.534 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999973 358999999999999999999999999999999999999999999999999986553 478899
Q ss_pred EEecCCCCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||+|.+|.+ |++||+.++.. ..+ ++++.++++..++.++.. ....+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999986532 111 234455555555544433 2335799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998754 7899999999999876 999999999999999999999763
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=352.33 Aligned_cols=178 Identities=37% Similarity=0.643 Sum_probs=165.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++|+|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23599999999999999999999999999999999999999999999999988665 567788999
Q ss_pred EEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000830 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1265)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 541 (1265)
|++|++.+|+.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 457999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEee
Q 000830 542 LLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 542 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 600 (1265)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=365.06 Aligned_cols=209 Identities=25% Similarity=0.425 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 3599999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEccCCccccc-cHHHHhccCCC--CCCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 462 LVNQEPALFAT-TIRENILYGKD--DATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
|++|++.+++. |++||+.++.. ....+ ++.++++..+ ++........+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVG-----------LLEAADRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CHHHhhCChhhCCHHHHHHHHHHHH
Confidence 99999998876 99999987421 11111 2222222222 2222334456899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
++.+|++|||||||++||+++...+.+.|.++. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998875 3 7899999999999876 999999999999999987664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=371.22 Aligned_cols=213 Identities=29% Similarity=0.474 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999973 3589999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEecCCCC-CcccHHHHhccCCCC--C----CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPAL-FATSIYENILYGKDG--A----SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~L-F~gTIreNl~~g~~~--~----sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
+|+||++.+ +..|++||+.++... . .++.+.++++..++.++. ......||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHH
Confidence 999999987 678999999875321 1 123455666666654433 2334579999999999999
Q ss_pred Hhc------cCCCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000830 1170 AVL------KNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSS 1240 (1265)
Q Consensus 1170 ALl------r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1240 (1265)
||+ .+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999999999875 47899999999999875 99999999999999999999
Q ss_pred hhh
Q 000830 1241 LVE 1243 (1265)
Q Consensus 1241 Ll~ 1243 (1265)
+.+
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=382.93 Aligned_cols=229 Identities=28% Similarity=0.458 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCC-------CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh
Q 000830 381 HIEFKDVSFCYPSRP-------DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~-------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~ 453 (1265)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2468999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhhheeEEccCC--ccccc-cHHHHhccCC---CCCCHHHHHHHHHHhcHHHHHhcCccccc-ccccCCCCCCCh
Q 000830 454 K---WLRQQIGLVNQEP--ALFAT-TIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSG 523 (1265)
Q Consensus 454 ~---~~r~~i~~v~Q~~--~lf~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSg 523 (1265)
. .+|++|+||+|+| .|++. ||.+|+..+. ......+..+ .+.+.+..+ |++ ......+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERRE-----KALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 4677899999998 36654 9999986421 1112211111 111222222 111 123445678999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 524 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
|||||++|||||+.+|++||+||||++||..++..|.+.|.++.+ |.|+|+|||+++.+.. ||+|++|++|+|+|.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988753 8999999999999976 9999999999999999
Q ss_pred CcchhccCCchHHHHH
Q 000830 601 SHEELISNPNSAYAAL 616 (1265)
Q Consensus 601 ~~~~l~~~~~~~~~~~ 616 (1265)
+.+++++++...|.+.
T Consensus 238 ~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 238 TKEQIFNNPRHPYTQA 253 (327)
T ss_pred CHHHHhcCCCCHHHHH
Confidence 9999988766666543
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=383.87 Aligned_cols=227 Identities=23% Similarity=0.394 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC----CCcceEEECCeeCCCCChHHH
Q 000830 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----PLSGEILLDGNNIKGLDLKWL 456 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~~~~~~~~~~ 456 (1265)
++++|++++|+.... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|+++..++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999974322 459999999999999999999999999999999999998 489999999999988887665
Q ss_pred hh----heeEEccCCc--cccc-cHHHHhccCC---CCCCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCC
Q 000830 457 RQ----QIGLVNQEPA--LFAT-TIRENILYGK---DDATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1265)
Q Consensus 457 r~----~i~~v~Q~~~--lf~~-ti~~ni~~~~---~~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1265)
++ .|+||+|+|. +++. |+.+++.... .....+ ++.++++..+ |++ ........+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~g-------L~~-~~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVG-------IPD-PASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCC-------CCC-hHHHHhCCchhCC
Confidence 43 6999999995 4443 6666554211 011111 2222222222 221 1233567788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 000830 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599 (1265)
Q Consensus 523 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 599 (1265)
||||||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998853 8999999999999865 999999999999999
Q ss_pred eCcchhccCCchHHHHH
Q 000830 600 GSHEELISNPNSAYAAL 616 (1265)
Q Consensus 600 g~~~~l~~~~~~~~~~~ 616 (1265)
|+.+++.+++...|.+.
T Consensus 236 g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQA 252 (326)
T ss_pred CCHHHHhhCCCChHHHH
Confidence 99999998766666543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=362.75 Aligned_cols=210 Identities=32% Similarity=0.494 Sum_probs=186.9
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCH----HHHhc
Q 000830 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL----KSLRK 1094 (1265)
Q Consensus 1019 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l----~~lR~ 1094 (1265)
.+.|+.|+|+.+ .++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999744 468999999999999999999999999999999999999999999999998876542 34577
Q ss_pred ccEEEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000830 1095 HIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174 (1265)
Q Consensus 1095 ~i~~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~ 1174 (1265)
.++|+||+|.+|+.|++||+.++.+ ..+++..++++..++.+++..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999988543 345667788888899899999999999999998999999999999999999999
Q ss_pred CCEEEEecCcCCCCHHHHHHHHH--HHHHHc-CCceEEEEecCchhhhccCEEEEEeCCE
Q 000830 1175 PEILLLDEATSALDVESERVVQQ--ALQRLM-RKRTTIIVAHRLSTIKNADQISVIESGK 1231 (1265)
Q Consensus 1175 p~ILlLDEaTSaLD~~te~~I~~--~l~~~~-~~~TvI~IaHRl~ti~~~DrI~vl~~G~ 1231 (1265)
|++|||||||++||+.+...+.+ .++... .++|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988887 454443 3689999999999998899999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=374.09 Aligned_cols=220 Identities=27% Similarity=0.477 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCC--CCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1265)
.++++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 358999999999999999999999999999999999997 699999999999853 345
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCC--CCCHHH-----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DATMEE-----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~~~~-----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
..++++++|++|++.+|..|++||+.++.. ...+++ +.++++..+ +.+++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAA-------IWDELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcC-------CcchHHHHHhcCcccCCHHHH
Confidence 667889999999999998999999987532 111111 111111111 112333445677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccCCc
Q 000830 606 ISNPN 610 (1265)
Q Consensus 606 ~~~~~ 610 (1265)
...+.
T Consensus 254 ~~~~~ 258 (271)
T PRK14238 254 FSNPS 258 (271)
T ss_pred HcCCC
Confidence 76543
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=371.36 Aligned_cols=225 Identities=30% Similarity=0.463 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~l 1089 (1265)
.+.+++++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999963 4689999999999999999999999999999999999987 79999999999864 344
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCCC-----CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGKD-----GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~-----~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
..+|++++|+||+|.+|..|++||+.++.. ....+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999987531 1123466777777776544432 2345667899999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEe--------CCEEEEe
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIE--------SGKIIEQ 1235 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~--------~G~Ive~ 1235 (1265)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778899999999999876 99999996 8999999
Q ss_pred cChhhhhhcCCcHHHH
Q 000830 1236 GTHSSLVENEDGAYFK 1251 (1265)
Q Consensus 1236 Gt~~eLl~~~~g~f~~ 1251 (1265)
|+++++++++...+.+
T Consensus 238 g~~~~~~~~~~~~~~~ 253 (261)
T PRK14263 238 GPTAQIFQNPREQLTS 253 (261)
T ss_pred CCHHHHHhCCCcHHHH
Confidence 9999998754433433
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=362.55 Aligned_cols=203 Identities=27% Similarity=0.449 Sum_probs=173.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 4599999999999999999999999999999999999999999999999988654 45678899
Q ss_pred EEccCCcccc-ccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 462 LVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
||+|++.+|. .|++||+.++.. ..+.+++.++++..++.+ .....+.+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-----------SAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 599999987532 123344444444443322 23445678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998875 48999999999999875 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=370.38 Aligned_cols=222 Identities=30% Similarity=0.513 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccC-CCCHH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIK-RLNLK 1090 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~-~~~l~ 1090 (1265)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4589999999999999999999999999999999999986 5999999999985 45667
Q ss_pred HHhcccEEEecCCCCCcccHHHHhccCCC--CCC-H----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1091 SLRKHIALVQQEPALFATSIYENILYGKD--GAS-E----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1091 ~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~s-d----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
.+|+.++|+||+|.+|..|++||+.++.. ... + +++.++++.+++.+.+ ..........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence 88999999999999999999999986521 111 1 2344455555554332 22334455689999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999887 9999999999999999999987
Q ss_pred hcCCcH
Q 000830 1243 ENEDGA 1248 (1265)
Q Consensus 1243 ~~~~g~ 1248 (1265)
+++...
T Consensus 233 ~~~~~~ 238 (249)
T PRK14253 233 SNPKDD 238 (249)
T ss_pred cCCCCh
Confidence 644333
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.11 Aligned_cols=217 Identities=34% Similarity=0.556 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCC--ChHHHhhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL--DLKWLRQQ 459 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~--~~~~~r~~ 459 (1265)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 3589999999999999999999999999999999999999999999999998764 34567889
Q ss_pred eeEEccCCcccc-ccHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHh
Q 000830 460 IGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal 535 (1265)
++|++|++.++. .|++||+.++.. .....+..+ .+.+.+..+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999999886 499999987531 112222111 112333333 445555667789999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 536 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+.+|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 48999999999999865 999999999999999999988654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=370.66 Aligned_cols=222 Identities=29% Similarity=0.527 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----cceEEECCeeCCC--CCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--LDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~ 453 (1265)
.|+++|++|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 35999999999999999999999999999999999999997 6999999998864 345
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCC--CC-HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--AT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqria 530 (1265)
..+|+.++||+|++.+|+.|++||+.++... .. .++..+.+.. +.+.+ .+.+.........+.+||||||||++
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~--~l~~~-~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEK--SLRQA-ALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHH--HHHHh-CCchhhhhHhhCCcccCCHHHHHHHH
Confidence 5778899999999999999999999876321 11 1112111111 11111 22222334466778899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 531 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999888668999999999999876 899999999999999999988654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=342.91 Aligned_cols=220 Identities=30% Similarity=0.478 Sum_probs=190.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH-Hhhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1265)
-++++|++-.|+. ..+|++|||++++||+++++|+||+||||+++.|+|+.+|.+|+|.++|+|+...+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999974 46999999999999999999999999999999999999999999999999999998765 5778
Q ss_pred eeEEccCCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
|+||||.-.+|+. ||+||+.+|......++- ......+..+-+|. +......++.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999987 999999987532221111 11112223344564 56677888999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|++|+|||||.+|-|.-.+.|.+.|+++++ +.||++|-++...... |||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 6799999999998755 999999999999999999999876
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=375.37 Aligned_cols=212 Identities=31% Similarity=0.475 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccC--CCCHHHHhcc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIK--RLNLKSLRKH 1095 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~l~~lR~~ 1095 (1265)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 35899999999999999999999999999999999999999999999999985 3445678899
Q ss_pred cEEEecCCC--CCcccHHHHhccCC--CCCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1096 IALVQQEPA--LFATSIYENILYGK--DGASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1096 i~~VpQdp~--LF~gTIreNl~~g~--~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
++||||+|. +|..|+.+|+.++. ...+. +++.++++..++.++. + ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-------H----QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-------c----CCchhCCHHHHHHHHH
Confidence 999999985 67789999997641 12222 2344555555554432 2 2345799999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
||||+.+|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999875 47899999999999965 99999999999999999999876
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=371.14 Aligned_cols=219 Identities=33% Similarity=0.523 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhc---cCC--CcceEEECCeeCCCC--Ch
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF---YEP--LSGEILLDGNNIKGL--DL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~---~~~--~~G~i~~~g~~~~~~--~~ 453 (1265)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 4589999999999999999999999999999999997 454 589999999998653 34
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCC--C-CHHH----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
..+|++++|++|++.+|+.|++||+.++... . ..++ +.++++.. .+++..++.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGA-------ALWDEVKDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHc-------CCCcchhhhhhCCcccCCHHHH
Confidence 5678899999999999988999999875321 1 1111 12222221 2222233455677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999998
Q ss_pred ccCC
Q 000830 606 ISNP 609 (1265)
Q Consensus 606 ~~~~ 609 (1265)
.+++
T Consensus 233 ~~~~ 236 (250)
T PRK14245 233 FTNP 236 (250)
T ss_pred hcCC
Confidence 7653
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=374.36 Aligned_cols=220 Identities=33% Similarity=0.536 Sum_probs=185.5
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCC--C
Q 000830 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--L 451 (1265)
Q Consensus 379 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~ 451 (1265)
.+.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 3589999999999999999999999999999999999984 89999999999864 3
Q ss_pred ChHHHhhheeEEccCCccccccHHHHhccCCCC--C-CH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChH
Q 000830 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1265)
Q Consensus 452 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1265)
+...+|+.++|++|++.+|+.|++||+.++... . .. +++.++++..+ +++...+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAA-------LWDEVKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcC-------CChhHHHHhhCCcccCCHH
Confidence 456778899999999999989999999875321 1 11 12223333322 2222234556778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcc
Q 000830 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 525 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1265)
||||++|||||+++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999988778999999999999865 9999999999999999999
Q ss_pred hhccC
Q 000830 604 ELISN 608 (1265)
Q Consensus 604 ~l~~~ 608 (1265)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 88755
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=364.72 Aligned_cols=202 Identities=33% Similarity=0.530 Sum_probs=172.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCH---HHHhc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL---KSLRK 1094 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l---~~lR~ 1094 (1265)
|+++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 358999999999999999999999999999999999999999999999999987654 34788
Q ss_pred ccEEEecCCCCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1095 HIALVQQEPALFA-TSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1095 ~i~~VpQdp~LF~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
.++||||+|.+|. .|++||+.++.. ..+ ++++.++++..++.+.... ...+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHH
Confidence 9999999999997 499999986421 122 2345566666665544333 234799999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEE
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKI 1232 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~I 1232 (1265)
||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 47899999999999986 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=372.72 Aligned_cols=222 Identities=31% Similarity=0.511 Sum_probs=188.7
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CcEEEECCcccCC--CC
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT-----AGKVMVDGIDIKR--LN 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--~~ 1088 (1265)
+.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.|+.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 35899999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKD--GA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
...+|+.++|+||++.+|..|++||+.++.. .. + ++.+.++++..++.+++.. ..+.....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999976421 11 2 2335566666666544332 2345567899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhc-cCEEEEEeC-----CEEE
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIES-----GKII 1233 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~~-----G~Iv 1233 (1265)
|||++|||||+++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999864 47999999999999876 999999999 9999
Q ss_pred EecChhhhhhcCCc
Q 000830 1234 EQGTHSSLVENEDG 1247 (1265)
Q Consensus 1234 e~Gt~~eLl~~~~g 1247 (1265)
+.|+++++.+++..
T Consensus 236 ~~~~~~~~~~~~~~ 249 (261)
T PRK14258 236 EFGLTKKIFNSPHD 249 (261)
T ss_pred EeCCHHHHHhCCCC
Confidence 99999999875444
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=364.31 Aligned_cols=201 Identities=41% Similarity=0.672 Sum_probs=171.7
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEE
Q 000830 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIAL 1098 (1265)
Q Consensus 1019 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~ 1098 (1265)
+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999742 2468999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EecCC--CCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1099 VQQEP--ALFATSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1099 VpQdp--~LF~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
+||+| .++..|++||+.++.. ..+. +++.+.++..++.++. ......||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHHHHH
Confidence 99998 3678899999976421 1222 2344455555544333 33446799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCE
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGK 1231 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~ 1231 (1265)
|+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999998764 7899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=371.56 Aligned_cols=219 Identities=28% Similarity=0.513 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCCC--Ch
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1265)
.|+++|++|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 3599999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCCC---CHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA---TME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~---~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
...++.++|++|++.+|+.|++||+.++.... ... .+.++++.. .+.+++.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGA-------ALWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHh-------cCchhhHHHhhcChhhCCHHHH
Confidence 66788899999999999999999999864211 111 122222222 2223334456778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999965 999999999999999999988
Q ss_pred ccCC
Q 000830 606 ISNP 609 (1265)
Q Consensus 606 ~~~~ 609 (1265)
...+
T Consensus 236 ~~~~ 239 (253)
T PRK14261 236 FENP 239 (253)
T ss_pred HhCC
Confidence 7553
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=371.80 Aligned_cols=225 Identities=33% Similarity=0.520 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT-----AGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--~~l 1089 (1265)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 46899999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhcccEEEecCCCCCcc-cHHHHhccCCC--CC-CHHHHHHH----HHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1090 KSLRKHIALVQQEPALFAT-SIYENILYGKD--GA-SEGEVIEA----AKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~g-TIreNl~~g~~--~~-sd~ei~~a----l~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
..+|+.++|+||+|.+|.. |++||+.++.. .. .+++..+. ++..++.+. +++.++++ ..+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~~----~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKTP----ATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcCC----cccCCHHH
Confidence 5778999999999999984 99999976431 11 23333332 223333222 22233443 45799999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSS 1240 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1240 (1265)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999986 99999999999999999999
Q ss_pred hhhcCCcHHHH
Q 000830 1241 LVENEDGAYFK 1251 (1265)
Q Consensus 1241 Ll~~~~g~f~~ 1251 (1265)
+++++...+.+
T Consensus 234 ~~~~~~~~~~~ 244 (252)
T PRK14272 234 LFTNPRDERTE 244 (252)
T ss_pred HHhCcCcHHHH
Confidence 98755554543
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=372.58 Aligned_cols=219 Identities=29% Similarity=0.463 Sum_probs=184.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCC--CC
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~ 452 (1265)
..|+++|++|+|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999997 589999999999864 34
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCC--C-CHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
...+|+.|+||+|++.+|+.|++||+.++... . ..+ ++.++++..+ +.++.++..+..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAA-------LWDQVKDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcC-------CCchhhhhhcCCcccCCHHH
Confidence 55678899999999999999999999886321 1 111 1222222222 22222345667788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcch
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1265)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999865 99999999999999999999
Q ss_pred hccC
Q 000830 605 LISN 608 (1265)
Q Consensus 605 l~~~ 608 (1265)
+...
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 8764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=372.83 Aligned_cols=214 Identities=27% Similarity=0.413 Sum_probs=187.5
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcc
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
..|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...++++
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 36999999999973 358999999999999999999999999999999999999999999999999988888888899
Q ss_pred cEEEecCCCCCc-ccHHHHhccCC-CC---------CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1096 IALVQQEPALFA-TSIYENILYGK-DG---------ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1096 i~~VpQdp~LF~-gTIreNl~~g~-~~---------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
++|+||++.+|. .|++||+.++. +. ..++.+.++++..++.++.. .....||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHH
Confidence 999999998875 69999998642 11 11234566666666654432 3446799999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
++||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998753 7899999999998866 999999999999999999998
Q ss_pred hh
Q 000830 1242 VE 1243 (1265)
Q Consensus 1242 l~ 1243 (1265)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 75
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=367.73 Aligned_cols=219 Identities=25% Similarity=0.413 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH-Hhhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1265)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 35999999999999999999999999999999999999999999999999998877654 6778
Q ss_pred eeEEccCCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
++|++|++.+|++ |++||+.++......++..+.+ ..+.+.+..+ +........+||||||||++|||||+.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~--~~~l~~~~~l----~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI--KWVYELFPRL----HERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH--HHHHHHHHHH----HHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 9999998864322222222111 1111222111 1123346678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 99999999999999999999999998875 48999999999998755 999999999999999999998643
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=372.53 Aligned_cols=219 Identities=31% Similarity=0.499 Sum_probs=184.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~l 1089 (1265)
.++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3589999999999999999999999999999999999974 69999999999853 445
Q ss_pred HHHhcccEEEecCCCCCc-ccHHHHhccCCC---CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1090 KSLRKHIALVQQEPALFA-TSIYENILYGKD---GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~-gTIreNl~~g~~---~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
..+|+.++|+||++.+|. .|++||+.++.. ..+ ++.+.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999997 599999976421 111 233455565665543321 22344556899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEe------CCEEEE
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIE------SGKIIE 1234 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~------~G~Ive 1234 (1265)
|||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999998777899999999999865 99999997 899999
Q ss_pred ecChhhhhhcC
Q 000830 1235 QGTHSSLVENE 1245 (1265)
Q Consensus 1235 ~Gt~~eLl~~~ 1245 (1265)
.|++++++..+
T Consensus 234 ~~~~~~~~~~~ 244 (258)
T PRK14241 234 IDDTEKIFSNP 244 (258)
T ss_pred cCCHHHHHhCc
Confidence 99999997643
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=374.55 Aligned_cols=218 Identities=29% Similarity=0.525 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCC-hHHHhhhe
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWLRQQI 460 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~r~~i 460 (1265)
++++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 235999999999999999999999999999999999999999999999999987765 35678899
Q ss_pred eEEccCCc--cccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 461 GLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
+||+|+|. +++.|+.|||.++... .+.++..+.+ .+.+..+ |++......+..||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRV-----DRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5667999999886421 2222222111 1122222 3444455667789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998875 48999999999999988999999999999999999887654
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=371.45 Aligned_cols=220 Identities=29% Similarity=0.507 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCC--CCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1265)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 358999999999999999999999999999999999986 489999999998853 455
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCCC--C---HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA--T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1265)
..+|++++||+|++.+|+.|++||+.++.... . .+++.++++..++.+++ +......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 67788999999999999889999998864211 1 12223333333333222 223456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe---------CCEEEE
Q 000830 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ---------GRKIVK 598 (1265)
Q Consensus 529 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~---------~G~i~~ 598 (1265)
++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777999999999999866 99999998 899999
Q ss_pred eeCcchhccCCc
Q 000830 599 TGSHEELISNPN 610 (1265)
Q Consensus 599 ~g~~~~l~~~~~ 610 (1265)
.|+++|+.+.+.
T Consensus 240 ~~~~~~~~~~~~ 251 (264)
T PRK14243 240 FDRTEKIFNSPQ 251 (264)
T ss_pred eCCHHHHHhCCC
Confidence 999999976543
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=376.49 Aligned_cols=226 Identities=33% Similarity=0.473 Sum_probs=188.1
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCCC--C
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKRL--N 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~~--~ 1088 (1265)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 36899999999963 358999999999999999999999999999999999864 4999999999998643 3
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKD--GA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
...+|++++||||+|.+|..|++||+.++.. .. + ++++.++++..++.+.+. .........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHH
Confidence 3467899999999999998999999987521 11 1 123445555555432221 12234556799999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSS 1240 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1240 (1265)
|||++|||||+.+|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999876 99999999999999999999
Q ss_pred hhhcCCcHHHH
Q 000830 1241 LVENEDGAYFK 1251 (1265)
Q Consensus 1241 Ll~~~~g~f~~ 1251 (1265)
+.+++...|.+
T Consensus 268 ~~~~~~~~~~~ 278 (286)
T PRK14275 268 LFTNPKDRMTE 278 (286)
T ss_pred HHhCCCcHHHH
Confidence 98754444444
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=370.91 Aligned_cols=223 Identities=32% Similarity=0.528 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCC--CCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 453 (1265)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 359999999999999999999999999999999999997 479999999998854 344
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCC--C-CHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
..+|+.++|++|++.+|+.|++||+.++... . ..+ ++.++++..+ +...........+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAA-------IWKETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC-------CCcchHHHhccChhhCCHHHH
Confidence 5678889999999999999999999876321 1 111 1222222222 111111234566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999866 999999999999999999998
Q ss_pred ccCCchHH
Q 000830 606 ISNPNSAY 613 (1265)
Q Consensus 606 ~~~~~~~~ 613 (1265)
...+...|
T Consensus 234 ~~~~~~~~ 241 (251)
T PRK14251 234 FIAPKKQI 241 (251)
T ss_pred HhCCCCHH
Confidence 76543333
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=364.85 Aligned_cols=198 Identities=31% Similarity=0.532 Sum_probs=169.1
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEE
Q 000830 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIAL 1098 (1265)
Q Consensus 1019 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~ 1098 (1265)
+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 35899999999999999999999999999999999999999999999998874 46889999
Q ss_pred EecCCCC---CcccHHHHhccCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1099 VQQEPAL---FATSIYENILYGKDG----------ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1099 VpQdp~L---F~gTIreNl~~g~~~----------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
+||+|.+ |+.|++||+.++... ..++++.++++..++.++... ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999986 668999999875321 112345666666666554432 3357999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
+|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 57899999999999976 9999999886 56654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=378.76 Aligned_cols=224 Identities=30% Similarity=0.527 Sum_probs=183.2
Q ss_pred cccEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCC----C-
Q 000830 379 SGHIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG----L- 451 (1265)
Q Consensus 379 ~~~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~- 451 (1265)
.+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35799999999997432 1358999999999999999999999999999999999999999999999998752 2
Q ss_pred ChHHHhhheeEEccCC--ccccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHH
Q 000830 452 DLKWLRQQIGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1265)
Q Consensus 452 ~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1265)
+...+|+.|+||+|+| .+|+.|++||+.++... ...++..+.+ .++.+.+ .+|++ .....+.+|||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~--~~ll~~~-~L~~~---~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV--PELLKLV-QLPED---YVKRSPFELSGGQKR 157 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCChh---HhcCChhhCCHHHHH
Confidence 3456788999999998 46778999999876421 2222222211 1222222 34322 245667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcch
Q 000830 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1265)
Q Consensus 528 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1265)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998875 38999999999998865 99999999999999999888
Q ss_pred hccC
Q 000830 605 LISN 608 (1265)
Q Consensus 605 l~~~ 608 (1265)
+...
T Consensus 238 ~~~~ 241 (289)
T PRK13645 238 IFSN 241 (289)
T ss_pred HhcC
Confidence 7654
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=374.14 Aligned_cols=220 Identities=29% Similarity=0.545 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.++++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 34699999999999999999999999999999999999999999999999999877777888999
Q ss_pred eEEccCCc--cccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 461 GLVNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 461 ~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
+||+|+|. ++..|++||+.++... .+.++..+. +.+.+..+ |++........+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDI-----IDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 4567999999876321 122222111 11222222 2333455666799999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998753 4899999999999888999999999999999998887654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=368.96 Aligned_cols=221 Identities=23% Similarity=0.416 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH-hhhe
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1265)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 358999999999999999999999999999999999999999999999999887766543 4579
Q ss_pred eEEccCCccccc-cHHHHhccCCCCCC-H-HH---HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDDAT-M-EE---ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~~-~-~~---~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
+|++|++.+|++ |++||+.++..... . .. .........+.+.+..+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999987 99999988642110 0 00 00001111122334333 44455566778999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998778999999999999976 99999999999999999988764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=373.69 Aligned_cols=213 Identities=29% Similarity=0.467 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999963 3599999999999999999999999999999999999999999999999999888888888899
Q ss_pred eEEccCCccccc-cHHHHhccCCCCC----------CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHH
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDDA----------TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1265)
+|++|++.++.+ |+.||+.++.... ..+++.++++..++ +........+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL-----------KPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-----------HHHhcCCcccCCHHHHHHH
Confidence 999999877765 9999998763210 11223333333332 2223444568999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhc
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 530 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
+|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999998753 7999999999999865 9999999999999999998876
Q ss_pred c
Q 000830 607 S 607 (1265)
Q Consensus 607 ~ 607 (1265)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=380.59 Aligned_cols=213 Identities=31% Similarity=0.516 Sum_probs=180.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999998754 35678999
Q ss_pred EEEecCCCCCc-ccHHHHhccCC--CCCCHHHHH----HHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALFA-TSIYENILYGK--DGASEGEVI----EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF~-gTIreNl~~g~--~~~sd~ei~----~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
+|+||++.+|. .|++||+.+.. ...+..+.. ++++..++ ++.+++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-------hhHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 69999997421 123333332 23333332 33344444 469999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 47899999999999976 999999999999999999999763
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=377.12 Aligned_cols=221 Identities=30% Similarity=0.547 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCC----ChH
Q 000830 381 HIEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLK 454 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~ 454 (1265)
.|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 14699999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhhheeEEccCC--ccccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCccccc-ccccCCCCCCChHHHHHH
Q 000830 455 WLRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 455 ~~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 529 (1265)
..++.|+|++|+| .+|..|++||+.++.. ....++..+. +.+.+..+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6778899999998 5777899999987532 1222222111 11223322 343 234566789999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 530 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +|.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 48999999999999865 99999999999999999988765
Q ss_pred C
Q 000830 608 N 608 (1265)
Q Consensus 608 ~ 608 (1265)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=368.88 Aligned_cols=218 Identities=23% Similarity=0.430 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH-Hhhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW-LRQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 459 (1265)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 35999999999999999999999999999999999999999999999999998777644 5778
Q ss_pred eeEEccCCccccc-cHHHHhccCCCC---CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHh
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal 535 (1265)
++|++|++.+|+. |++||+.++... .+.++. ...+.+.+..+ |++........+||||||||++|||||
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999999885 999999875321 111111 11223344444 455556677789999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 536 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+.+|++|||||||++||+.+...+.+.+.++. +|+|+|++||+++.+.. ||++++|++|++++.|++++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 48999999999987765 999999999999999999888653
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=371.86 Aligned_cols=219 Identities=31% Similarity=0.509 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC--C---CcceEEECCeeCCCC--Ch
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKGL--DL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~~--~~ 453 (1265)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 358999999999999999999999999999999999954 6 599999999998643 34
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCC--C-CHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
..+|+.++||+|++.+|+.|++||+.++... . ..+ ++.++++..++ ..+..+.....+.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASI-------WDEVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCC-------chhHHHHHhcCcccCCHHHH
Confidence 5678899999999999999999999875311 1 111 12222222221 11223345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988768999999999998865 999999999999999999998
Q ss_pred ccCC
Q 000830 606 ISNP 609 (1265)
Q Consensus 606 ~~~~ 609 (1265)
.+.+
T Consensus 235 ~~~~ 238 (252)
T PRK14239 235 FMNP 238 (252)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=375.95 Aligned_cols=213 Identities=37% Similarity=0.564 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCC--CCHHHHhcc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKR--LNLKSLRKH 1095 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--~~l~~lR~~ 1095 (1265)
|+++||+++|++ ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2358999999999999999999999999999999999999999999999999852 234567899
Q ss_pred cEEEecCC--CCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1096 IALVQQEP--ALFATSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1096 i~~VpQdp--~LF~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
|+|+||+| .+|..|++||+.++.. ..+. +++.++++..++.++. + ....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~----~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-------N----KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-------c----CChhhCCHHHHHHHHH
Confidence 99999998 4788999999986421 1222 3345555555554332 2 2345799999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
|||++++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998754 7899999999999875 99999999999999999999876
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=369.98 Aligned_cols=223 Identities=26% Similarity=0.490 Sum_probs=184.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC--C---CcceEEECCeeCCCC--C
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKGL--D 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~~--~ 452 (1265)
+.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999963 359999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred hHHHhhheeEEccCCcccc-ccHHHHhccCCCC---CCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChH
Q 000830 453 LKWLRQQIGLVNQEPALFA-TTIRENILYGKDD---ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1265)
...+|+.++||+|++.+|. .|++||+.++... .+.+ ++.++++..++.+ .+....+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWD-------EVKDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhHHhhCCcCcCCHH
Confidence 4567889999999999998 4999999875311 1111 1222222222211 1222345567899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcc
Q 000830 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 525 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1265)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 9999999999999999999
Q ss_pred hhccCCchH
Q 000830 604 ELISNPNSA 612 (1265)
Q Consensus 604 ~l~~~~~~~ 612 (1265)
++...+...
T Consensus 233 ~~~~~~~~~ 241 (252)
T PRK14256 233 KIFTTPEKK 241 (252)
T ss_pred HHHhCCCcH
Confidence 987654433
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=366.27 Aligned_cols=212 Identities=36% Similarity=0.568 Sum_probs=173.9
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCH---HHHh
Q 000830 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL---KSLR 1093 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l---~~lR 1093 (1265)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1268999999999999999999999999999999999999999999999999988763 5778
Q ss_pred cccEEEecCC--CCC-cccHHHHhccCCC----CCCHHHHHHHHHHhchHHHHHhCCCCcc-ccccCCCCCCChhHHHHH
Q 000830 1094 KHIALVQQEP--ALF-ATSIYENILYGKD----GASEGEVIEAAKLANAHSFISALPEGYS-TKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1094 ~~i~~VpQdp--~LF-~gTIreNl~~g~~----~~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~LSgGQkQrl 1165 (1265)
++++|+||+| .++ ..|+++|+.++.. ...+++...+. .+.++.+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 5799999975311 11111111110 1223333 332 234455678999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
+|||||+.+|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998764 7899999999999985 9999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=368.19 Aligned_cols=205 Identities=30% Similarity=0.446 Sum_probs=174.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999963 35999999999999999999999999999999999999999999999998753 45778
Q ss_pred eeEEccCCcccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 460 IGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
++|++|++.+|+ .|++||+.++......+++.++++..+ ++......+.+||||||||++|||||+++
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVG-----------LADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcC-----------ChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 599999988643212233333333332 33344566788999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcc
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1265)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998874 37999999999999865 9999999999999988765
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=371.53 Aligned_cols=220 Identities=25% Similarity=0.492 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHH-hcc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL-RKH 1095 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l-R~~ 1095 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 468999999999999999999999999999999999999999999999999988776554 456
Q ss_pred cEEEecCCCCCcc-cHHHHhccCCCCCC--------------HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChh
Q 000830 1096 IALVQQEPALFAT-SIYENILYGKDGAS--------------EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160 (1265)
Q Consensus 1096 i~~VpQdp~LF~g-TIreNl~~g~~~~s--------------d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1160 (1265)
++|+||+|.+|.+ |++||+.++..... +.+..++ ...+.++++.+ |++........+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999986 99999987521100 0000000 11123344444 5555556667789999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237 (1265)
Q Consensus 1161 QkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt 1237 (1265)
||||++||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999998753 7899999999999976 99999999999999999
Q ss_pred hhhhhh
Q 000830 1238 HSSLVE 1243 (1265)
Q Consensus 1238 ~~eLl~ 1243 (1265)
++++.+
T Consensus 238 ~~~~~~ 243 (255)
T PRK11300 238 PEEIRN 243 (255)
T ss_pred HHHHhh
Confidence 999875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=371.74 Aligned_cols=219 Identities=31% Similarity=0.534 Sum_probs=181.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCCCC--hH
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGLD--LK 454 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~~--~~ 454 (1265)
-+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 458999999999999999999999999999999999986 47999999999886543 34
Q ss_pred HHhhheeEEccCCccccccHHHHhccCCC--CC--CHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 455 WLRQQIGLVNQEPALFATTIRENILYGKD--DA--TME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~--~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
.+|++++||+|++.+|+.|++||+.++.. .. ..+ ++.++++..+ +.+.+.+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVG-------LWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-------CCchhhhHhhcChhhCCHHHH
Confidence 57889999999999999999999987521 11 111 1222222222 221122345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999998
Q ss_pred ccCCc
Q 000830 606 ISNPN 610 (1265)
Q Consensus 606 ~~~~~ 610 (1265)
.+.+.
T Consensus 236 ~~~~~ 240 (251)
T PRK14244 236 FKNPQ 240 (251)
T ss_pred hcCCC
Confidence 76543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=376.47 Aligned_cols=220 Identities=29% Similarity=0.514 Sum_probs=182.4
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCC----ChHH
Q 000830 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKW 455 (1265)
Q Consensus 382 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~ 455 (1265)
|+++||+|+|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997422 13599999999999999999999999999999999999999999999999998754 3466
Q ss_pred HhhheeEEccCC--ccccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCccccc-ccccCCCCCCChHHHHHHH
Q 000830 456 LRQQIGLVNQEP--ALFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIA 530 (1265)
Q Consensus 456 ~r~~i~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqria 530 (1265)
+|+.|+|++|++ .+|+.|++||+.++.. ..+.++..+.+ .+.+..+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 6788899999987532 12233222211 1222222 232 2345667789999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 531 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|||||+.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998875 48999999999999865 999999999999999999888654
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=381.20 Aligned_cols=217 Identities=27% Similarity=0.457 Sum_probs=179.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999998653 35678899
Q ss_pred eEEccCCcccc-ccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 461 GLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
+||+|++.++. .|++||+.+... ..+..+..+.+ .++.+.+ .+++.. .....+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~ll~~~-~l~~~~----~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEFA-RLESKA----DVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHC-CChhHh----cCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999886 499999975221 12222222211 1122221 333333 34456899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998875 48999999999999875 999999999999999999888643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=375.13 Aligned_cols=217 Identities=28% Similarity=0.477 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCC---CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCC-hHHH
Q 000830 381 HIEFKDVSFCYPSRP---DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD-LKWL 456 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~---~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~ 456 (1265)
-++++|++|+|++.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997422 246999999999999999999999999999999999999999999999999987643 3567
Q ss_pred hhheeEEccCCc--cccccHHHHhccCCCC--CCHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHH
Q 000830 457 RQQIGLVNQEPA--LFATTIRENILYGKDD--ATME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1265)
Q Consensus 457 r~~i~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1265)
|++++||+|+|. ++..|+.||+.|+... .+.. ++.++++..+ +.........+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVG-----------MYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHH
Confidence 889999999984 6767999999986321 1222 2222233332 3333445567899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhc
Q 000830 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 529 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 389999999999999889999999999999999999987
Q ss_pred cC
Q 000830 607 SN 608 (1265)
Q Consensus 607 ~~ 608 (1265)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=378.62 Aligned_cols=212 Identities=25% Similarity=0.462 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 468999999999999999999999999999999999999999999999999977 4467889999
Q ss_pred EEecCCCCCcc-cHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||+|.+|.+ |++||+.+... ..+. +++.++++.. |++........+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELV-----------GLRPEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCchHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999976 99999975321 1222 2333333333 34444445567899999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
|+++|++|||||||++||+.+.+.+++.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998778999999999999877 999999999999999999999763
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=371.11 Aligned_cols=212 Identities=27% Similarity=0.445 Sum_probs=184.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 46899999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEecCCC-CCcccHHHHhccCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000830 1098 LVQQEPA-LFATSIYENILYGKDG----------ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1098 ~VpQdp~-LF~gTIreNl~~g~~~----------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrla 1166 (1265)
|+||++. .+..|++||+.++... ..++++.++++..++.+.. ......||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence 9999996 4567999999875210 0122455566666554432 2344579999999999
Q ss_pred HHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
||||++.+|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999998754 6899999999999965 99999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=364.07 Aligned_cols=208 Identities=32% Similarity=0.527 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++||+++|+. . ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999963 2 249999999999999999999999999999999999999999999999886654 357899
Q ss_pred EEecCCCCCcc-cHHHHhccCC-CC-----CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGK-DG-----ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~-~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||++.+|.+ |++||+.++. +. ..++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998642 11 12346778888888877666554 3699999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhh
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~ 1243 (1265)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999998753 7899999999999876 99999999999999999999986
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=360.02 Aligned_cols=201 Identities=33% Similarity=0.546 Sum_probs=175.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999632 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEecCCCCCcc-cHHHHhccCCC-C-----CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGKD-G-----ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~~-~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||+|.+|.+ |++||+.++.. . ..++++.++++..++.+.....| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999986532 1 12446777788877766655543 4799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
++++|++|||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998753 7899999999999976 9999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=368.86 Aligned_cols=228 Identities=29% Similarity=0.491 Sum_probs=190.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEEC------CcccCCCCH
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVD------GIDIKRLNL 1089 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id------G~di~~~~l 1089 (1265)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |.++.+.+.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35999999999963 358999999999999999999999999999999999999998666655 477777777
Q ss_pred HHHhcccEEEecCCCCCcc-cHHHHhccCCC--CC-CHHH----HHHHHHHhchHHHHHhCCCCccccccCCCCCCChhH
Q 000830 1090 KSLRKHIALVQQEPALFAT-SIYENILYGKD--GA-SEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~g-TIreNl~~g~~--~~-sd~e----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ 1161 (1265)
..+|++++|+||+|.+|.+ |+++|+.++.. .. ++++ +.++++..++.+++. ......+..||+||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 7889999999999999976 99999986521 11 2223 344555555533221 12334566799999
Q ss_pred HHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSS 1240 (1265)
Q Consensus 1162 kQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~e 1240 (1265)
|||++||||++++|++|||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999988778999999999999955 99999999999999999999
Q ss_pred hhhcCCcHHHHHH
Q 000830 1241 LVENEDGAYFKLI 1253 (1265)
Q Consensus 1241 Ll~~~~g~f~~l~ 1253 (1265)
+.+++...|.+.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (257)
T PRK14246 239 IFTSPKNELTEKY 251 (257)
T ss_pred HHhCCCcHHHHHH
Confidence 9876555565544
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=371.08 Aligned_cols=229 Identities=24% Similarity=0.427 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHH
Q 000830 1017 TIELRGVHFSYPSR------PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK 1090 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~ 1090 (1265)
.|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 124689999999999999999999999999999999999999999999999999765666
Q ss_pred HHhcccEEEecCCC--CCcc-cHHHHhccCC---CCCC----HHHHHHHHHHhchH-HHHHhCCCCccccccCCCCCCCh
Q 000830 1091 SLRKHIALVQQEPA--LFAT-SIYENILYGK---DGAS----EGEVIEAAKLANAH-SFISALPEGYSTKVGERGVQLSG 1159 (1265)
Q Consensus 1091 ~lR~~i~~VpQdp~--LF~g-TIreNl~~g~---~~~s----d~ei~~al~~a~l~-~~i~~lp~Gldt~vge~G~~LSg 1159 (1265)
..+++++|+||+|. ++.. |+.+|+.++. .... ++++.++++..++. +... . ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-------Y----YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-------c----CchhcCH
Confidence 66788999999985 4443 8899986421 1111 24566667777663 2222 2 2357999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1160 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1160 GQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
|||||++|||||+++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999753 7899999999999987 9999999999999999
Q ss_pred ChhhhhhcC-CcHHHHHHHHh
Q 000830 1237 THSSLVENE-DGAYFKLINLQ 1256 (1265)
Q Consensus 1237 t~~eLl~~~-~g~f~~l~~~~ 1256 (1265)
+++++.+.+ ...+++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998743 34566777643
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=373.91 Aligned_cols=215 Identities=29% Similarity=0.493 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
-++++|++++|+++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3589999999999999999999999999999999999999999999999999877777888899
Q ss_pred eEEccCC--ccccccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 461 GLVNQEP--ALFATTIRENILYGKD--DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 461 ~~v~Q~~--~lf~~ti~~ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
+||+|+| .+|+.|+.||+.++.. ..+.++ +.++++..++ .......+..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL-----------EELRDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhHhcCCcccCCHHHHHHHHHH
Confidence 9999998 4777899999987532 122222 2222333222 2233445678999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEeeCcchhccC
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999988753 899999999999985 5999999999999999999998764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=373.36 Aligned_cols=216 Identities=29% Similarity=0.511 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCc---ceEEECCeeCCCCChHHHh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS---GEILLDGNNIKGLDLKWLR 457 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~i~~~g~~~~~~~~~~~r 457 (1265)
.|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999642 2459999999999999999999999999999999999999998 8999999999877777788
Q ss_pred hheeEEccCCc--cccccHHHHhccCCCC--CCHHH----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHH
Q 000830 458 QQIGLVNQEPA--LFATTIRENILYGKDD--ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 458 ~~i~~v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1265)
++|+||+|+|. +++.|+.|||.++... .+.++ +.++++..+ ++........+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVG-----------MLDYIDSEPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCC-----------ChhHhcCCcccCCHHHHHHH
Confidence 89999999984 5677999999886422 22322 222233322 33344556679999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhcc
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 530 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 899999999999998899999999999999999988865
Q ss_pred C
Q 000830 608 N 608 (1265)
Q Consensus 608 ~ 608 (1265)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=372.10 Aligned_cols=220 Identities=32% Similarity=0.533 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 24589999999999999999999999999999999999999999999999999888888888999
Q ss_pred eEEccCCc-cc-cccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 461 GLVNQEPA-LF-ATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 461 ~~v~Q~~~-lf-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
+|++|+|. +| ..|+++|+.++... ...++..+. ...+.+.+ |+.......+.+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~-----~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR--VSEALKQV-----DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH--HHHHHHHc-----CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 44 45999999886432 122222111 11111211 1222334566789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEeeCcchhccC
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 7899999999999888999999999999999999988654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=335.32 Aligned_cols=219 Identities=29% Similarity=0.484 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
+++.+++++|++ ...+++||||+++.||+++|.|||||||||++++|..++.|++|+|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 678999999974 3458999999999999999999999999999999999999999999999999765 4667888999
Q ss_pred EEccCCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000830 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~ 540 (1265)
+++-+.-|+.. |++|||.|...-.......-.++.+++.+.+ +++.....+..++|-|+||||+|||||++||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l-----~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL-----QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 99988888876 9999998743211111111123333332222 22333344455799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 541 ILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 541 illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+++||||||+||..+.+.+.+.+.+++. |++||+.||.+++++. ||+|+++++|+++..|+.+++.++
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999998875 9999999999999985 999999999999999999887653
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=366.97 Aligned_cols=227 Identities=26% Similarity=0.449 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcc-----cCCCCHHH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID-----IKRLNLKS 1091 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~~~l~~ 1091 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 358999999999999999999999999999999999999999999999999 87776554
Q ss_pred ----HhcccEEEecCCC--CC-cccHHHHhccCC---CCCCHHHHHHHHHHhchHHHHHhCCCCcc-ccccCCCCCCChh
Q 000830 1092 ----LRKHIALVQQEPA--LF-ATSIYENILYGK---DGASEGEVIEAAKLANAHSFISALPEGYS-TKVGERGVQLSGG 1160 (1265)
Q Consensus 1092 ----lR~~i~~VpQdp~--LF-~gTIreNl~~g~---~~~sd~ei~~al~~a~l~~~i~~lp~Gld-t~vge~G~~LSgG 1160 (1265)
+|+.++|+||++. ++ ..|+.+|+.+.. ......++.+ ...++++.+ |++ +.....+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3668999999984 33 348888886421 1111122211 234555555 343 3456677889999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237 (1265)
Q Consensus 1161 QkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt 1237 (1265)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998754 7899999999999985 99999999999999999
Q ss_pred hhhhhhcCCcHHHHHH
Q 000830 1238 HSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1238 ~~eLl~~~~g~f~~l~ 1253 (1265)
++++..++...|.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 236 TDQVLDDPQHPYTQLL 251 (258)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 9999875555565543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=364.33 Aligned_cols=209 Identities=33% Similarity=0.498 Sum_probs=171.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
|+++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997411 1469999999999999999999999999999999999999999999999998763 35789
Q ss_pred eEEccCCcccc-ccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 461 GLVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
+||+|++.+|+ .|++||+.++... ...++.. ..+.+.+..+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999987 5999999875321 1111111 1112223322 33334455667899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEe--CCEEEEeeCc
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQ--GRKIVKTGSH 602 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~--~G~i~~~g~~ 602 (1265)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|+++++++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998874 37999999999998765 99999999 7999998864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=363.84 Aligned_cols=208 Identities=30% Similarity=0.441 Sum_probs=177.5
Q ss_pred cEEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH---H
Q 000830 1017 TIELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS---L 1092 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---l 1092 (1265)
.|+++||+++|++... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974321 35899999999999999999999999999999999999999999999999998877643 2
Q ss_pred -hcccEEEecCCCCCcc-cHHHHhccCC--CCCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000830 1093 -RKHIALVQQEPALFAT-SIYENILYGK--DGAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR 1164 (1265)
Q Consensus 1093 -R~~i~~VpQdp~LF~g-TIreNl~~g~--~~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQr 1164 (1265)
+++++|+||+|.+|.+ |++||+.++. ...+ .+++.++++..++.++.... ...||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence 3689999999999875 9999997531 1111 23556666666665554433 34799999999
Q ss_pred HHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEeCCEEEEe
Q 000830 1165 VAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKIIEQ 1235 (1265)
Q Consensus 1165 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~Ive~ 1235 (1265)
++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+..||++++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998753 7899999999999988999999999999874
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=370.38 Aligned_cols=212 Identities=27% Similarity=0.489 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 45999999999999999999999999999999999999999999999999988888788888999
Q ss_pred EEccCCccccc-cHHHHhccCCCC-------CC---HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHH
Q 000830 462 LVNQEPALFAT-TIRENILYGKDD-------AT---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqria 530 (1265)
|++|++.++.+ |+.||+.++... .. .+++.++++.. |++......+..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHH
Confidence 99999998876 999999886321 01 11222222222 2233344566789999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 531 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
||||++.+|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998875 48999999999999865 99999999999999999988864
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=372.26 Aligned_cols=223 Identities=27% Similarity=0.508 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCCCC-hH
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGLD-LK 454 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~-~~ 454 (1265)
.++++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999973 4589999999999999999999999999999999999986 7999999999987653 45
Q ss_pred HHhhheeEEccCCccccccHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 455 WLRQQIGLVNQEPALFATTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
.+|++++|++|++.+|+.|++||+.++.. ..+.++..+.+ ..+.+.+ .+++.+++.....+.+||||||||++|
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA--QARLTEV-GLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH--HHHHHHc-CCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 67889999999999999999999987632 12333332211 1111111 233333345567788999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCC
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 609 (1265)
||||+.+|++|||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.+.+
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999999988767899999999999875 9999999999999999999997653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=366.98 Aligned_cols=216 Identities=28% Similarity=0.499 Sum_probs=180.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCC------CCChHH
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK------GLDLKW 455 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~------~~~~~~ 455 (1265)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ......
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 35999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhhheeEEccCCccccc-cHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 456 LRQQIGLVNQEPALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 456 ~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
+|++|+|++|++.+|++ |+.||+.++.. ....++.. ..+.+.+..+ |++........+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 78899999999999976 99999975311 11122211 1122333333 44555666778999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
||||+.+|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999999999999999999998875 48999999999999865 99999999999999999888754
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=348.31 Aligned_cols=172 Identities=45% Similarity=0.753 Sum_probs=162.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++. ..++++|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 245899999999999999999999999999999999999999999999999999998889999999
Q ss_pred EEecCCCCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000830 1098 LVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177 (1265)
Q Consensus 1098 ~VpQdp~LF~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1177 (1265)
|++|+|.+|++|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhccCEEEEEeCCEE
Q 000830 1178 LLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKNADQISVIESGKI 1232 (1265)
Q Consensus 1178 LlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~DrI~vl~~G~I 1232 (1265)
|||||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999875 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=370.64 Aligned_cols=221 Identities=33% Similarity=0.510 Sum_probs=188.5
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCcEEEECCcccCC--CC
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP-----TAGKVMVDGIDIKR--LN 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~ 1088 (1265)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 37999999999973 3589999999999999999999999999999999999864 58999999999864 34
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCCC-----CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHH
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKDG-----ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQ 1163 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQ 1163 (1265)
...+|++++|+||++.+|..|+++|+.++... ..++++.++++.+++.+.+.. ........|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHH
Confidence 45678999999999999989999999875211 123445566666666544432 233455679999999
Q ss_pred HHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEe---------CCEEE
Q 000830 1164 RVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIE---------SGKII 1233 (1265)
Q Consensus 1164 rlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~---------~G~Iv 1233 (1265)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999998778999999999999975 99999997 89999
Q ss_pred EecChhhhhhcCC
Q 000830 1234 EQGTHSSLVENED 1246 (1265)
Q Consensus 1234 e~Gt~~eLl~~~~ 1246 (1265)
+.|+++++..++.
T Consensus 249 ~~g~~~~~~~~~~ 261 (274)
T PRK14265 249 EFSPTEQMFGSPQ 261 (274)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999976444
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=364.22 Aligned_cols=211 Identities=33% Similarity=0.580 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++ . +|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 l~~~~l~~~~~~---~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE---F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC---c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 2 7999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEecCCCCCc-ccHHHHhccCCCC--CC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFA-TSIYENILYGKDG--AS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~-gTIreNl~~g~~~--~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||++.+|. .|++||+.++... .+ ++++.++++..++.++..+. ...||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHH
Confidence 9999999995 7999999864311 11 23456667677766555443 35799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcC
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENE 1245 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~ 1245 (1265)
++++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999998754 7899999999999876 9999999999999999999998743
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=362.50 Aligned_cols=204 Identities=30% Similarity=0.467 Sum_probs=173.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH---Hhc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS---LRK 1094 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR~ 1094 (1265)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 235899999999999999999999999999999999999999999999999998776543 688
Q ss_pred ccEEEecCCCCC-cccHHHHhccCC--CCCCHH----HHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1095 HIALVQQEPALF-ATSIYENILYGK--DGASEG----EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1095 ~i~~VpQdp~LF-~gTIreNl~~g~--~~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
.++|+||+|.+| ..|++||+.++. ...+++ ++.++++..++.+... ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 999999999874 679999998742 122333 3445555555544433 3345799999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIE 1234 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive 1234 (1265)
|||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999875 46899999999999987 99999999999854
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=362.81 Aligned_cols=211 Identities=27% Similarity=0.461 Sum_probs=179.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 3599999999999999999999999999999999999999999999999999888887788899
Q ss_pred eEEccCCccccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCccccc-ccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 461 GLVNQEPALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
+|++|++.+|+.|++||+.++... ...++ .+ +.+.+..+ |+. +.....+.+||||||||++|||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~----~~---~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP----AI---FLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH----HH---HHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999989999999864210 11110 11 11233333 232 34567778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEE-eCCEEEEeeCcc
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVV-QGRKIVKTGSHE 603 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l-~~G~i~~~g~~~ 603 (1265)
+|+++||||||++||+.+...+.+.|.++. .++|+|++||+++.++.||+|++| +++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999874 378999999999999889999999 477788899885
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=369.75 Aligned_cols=219 Identities=30% Similarity=0.526 Sum_probs=181.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCC--------
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL-------- 451 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-------- 451 (1265)
+.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 4589999999999999999999999999999999999999999999999988542
Q ss_pred -----ChHHHhhheeEEccCCccccc-cHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccccc-cCCCCCC
Q 000830 452 -----DLKWLRQQIGLVNQEPALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQV-GERGIQL 521 (1265)
Q Consensus 452 -----~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~L 521 (1265)
....++++++||+|++.+|+. |++||+.++.. .....+..+ .+.+.++.+ |+.... ...+.+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccC
Confidence 134667889999999999975 99999986421 111111111 111223332 333332 5567889
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 000830 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599 (1265)
Q Consensus 522 SgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 599 (1265)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 48999999999999986 999999999999999
Q ss_pred eCcchhccC
Q 000830 600 GSHEELISN 608 (1265)
Q Consensus 600 g~~~~l~~~ 608 (1265)
|+++++...
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999988754
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=368.22 Aligned_cols=218 Identities=29% Similarity=0.524 Sum_probs=183.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCC-CCChH
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIK-GLDLK 454 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~-~~~~~ 454 (1265)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999973 4589999999999999999999999999999999999986 5999999999885 44566
Q ss_pred HHhhheeEEccCCccccccHHHHhccCCCC--CC-HH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHH
Q 000830 455 WLRQQIGLVNQEPALFATTIRENILYGKDD--AT-ME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1265)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~-~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1265)
.+|+.++|++|++.+|+.|++||+.++... .. .+ ++.++++..+ +.+++.+.....+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA-------LWDEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcC-------CchhhhHHhhcCcccCCHHHHH
Confidence 788899999999999999999999876321 11 11 1222222222 2222234456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhc
Q 000830 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 528 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999988876
Q ss_pred cC
Q 000830 607 SN 608 (1265)
Q Consensus 607 ~~ 608 (1265)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=382.01 Aligned_cols=217 Identities=27% Similarity=0.470 Sum_probs=181.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|+++.... ...++.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999987644 4678899
Q ss_pred eEEccCCcccc-ccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhcc
Q 000830 461 GLVNQEPALFA-TTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~lf~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~ 537 (1265)
|||||++.++. .|++||+.+... ..+..+..+.+ .++.++ ..+++..++. ..+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~ll~~-~~L~~~~~~~----~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEF-ARLESKADAR----VSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHH-cCCchhhCCC----hhhCCHHHHHHHHHHHHHhc
Confidence 99999999875 499999985321 11222222211 112222 2345444444 45799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 538 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999875 48999999999999976 999999999999999999998643
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=361.69 Aligned_cols=207 Identities=35% Similarity=0.564 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999974 3589999999999999999999999999999999999999999999999998765443 46799
Q ss_pred EEccCCcccc-ccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 462 LVNQEPALFA-TTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 462 ~v~Q~~~lf~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
|++|++.+|. .|++||+.++... ...++..+. +.+.+..+ |++........+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER-----VREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 4999999875321 122221111 11122222 333445566678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998875 38999999999999876 9999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=367.92 Aligned_cols=218 Identities=31% Similarity=0.493 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCCC--Ch
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1265)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3589999999999999999999999999999999999985 799999999998643 34
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCC--C-CH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
..+|+.++|++|++.+|+.|++||+.++... . +. +++.++++..+ +.+++.......+..||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA-------LWDEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcC-------CchhhhhHhhCCcccCCHHHH
Confidence 5678889999999999999999999876321 1 11 12222233222 222223345567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999998
Q ss_pred ccC
Q 000830 606 ISN 608 (1265)
Q Consensus 606 ~~~ 608 (1265)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=362.84 Aligned_cols=210 Identities=27% Similarity=0.486 Sum_probs=180.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEecCCCCCcccHHHHhccCC---CCC-CHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000830 1097 ALVQQEPALFATSIYENILYGK---DGA-SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172 (1265)
Q Consensus 1097 ~~VpQdp~LF~gTIreNl~~g~---~~~-sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALl 1172 (1265)
+|+||++.+|+.|++||+.++. ... .++++.++++..++. ++.......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999997631 111 122333444444332 12344556789999999999999999
Q ss_pred cCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhccCEEEEEe-CCEEEEecChh
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIE-SGKIIEQGTHS 1239 (1265)
Q Consensus 1173 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~-~G~Ive~Gt~~ 1239 (1265)
++|+++||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998753 789999999999998899999994 66677889886
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=368.79 Aligned_cols=223 Identities=34% Similarity=0.507 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCcEEEECCcccCC--CCH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD--P---TAGKVMVDGIDIKR--LNL 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--~~l 1089 (1265)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999973 358999999999999999999999999999999999975 4 58999999999864 345
Q ss_pred HHHhcccEEEecCCCCCcccHHHHhccCC--CCC-C----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHH
Q 000830 1090 KSLRKHIALVQQEPALFATSIYENILYGK--DGA-S----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~--~~~-s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQk 1162 (1265)
..+|++++|+||+|.+|..|+++|+.++. ... . ++++.++++.+++.+.+ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 56788999999999999999999998642 111 1 23344455555543222 2233445568999999
Q ss_pred HHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241 (1265)
Q Consensus 1163 QrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eL 1241 (1265)
||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999875 999999999999999999998
Q ss_pred hhcCCcHH
Q 000830 1242 VENEDGAY 1249 (1265)
Q Consensus 1242 l~~~~g~f 1249 (1265)
..++...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14255 235 FLNPKEKE 242 (252)
T ss_pred hcCCCChH
Confidence 86544433
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=378.78 Aligned_cols=213 Identities=31% Similarity=0.546 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|+++
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 35899999999999999999999999999999999999999999999999997654 5688999
Q ss_pred EEEecCCCCC-cccHHHHhccCCC--CCCHHHHH----HHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALF-ATSIYENILYGKD--GASEGEVI----EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF-~gTIreNl~~g~~--~~sd~ei~----~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
+|+||++.+| ..|++||+.+... ..+..+.. ++++..+ +++..++.++ +||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~~~~~~~----~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADARVS----DLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchhhCCChh----hCCHHHHHHHHHHH
Confidence 9999999987 5699999975211 12222222 2222222 3444555554 69999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
||+.+|++|||||||++||+.+...+++.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 47899999999999976 999999999999999999999763
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=380.12 Aligned_cols=229 Identities=24% Similarity=0.378 Sum_probs=188.6
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC----CCCcEEEECCcccCCCCHHH
Q 000830 1017 TIELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD----PTAGKVMVDGIDIKRLNLKS 1091 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~----p~~G~I~idG~di~~~~l~~ 1091 (1265)
.|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996422 2468999999999999999999999999999999999986 58999999999999888765
Q ss_pred Hh----cccEEEecCCCC--C-cccHHHHhccC---C---C----C--CCHHHHHHHHHHhchHHHHHhCCCCccccccC
Q 000830 1092 LR----KHIALVQQEPAL--F-ATSIYENILYG---K---D----G--ASEGEVIEAAKLANAHSFISALPEGYSTKVGE 1152 (1265)
Q Consensus 1092 lR----~~i~~VpQdp~L--F-~gTIreNl~~g---~---~----~--~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge 1152 (1265)
++ ++|+||||+|.. + ..|+.+|+... . . . ...+++.++++.+++.+.-+ ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 53 479999999973 3 35899988531 1 0 0 01235566677776643211 1123
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeC
Q 000830 1153 RGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIES 1229 (1265)
Q Consensus 1153 ~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~ 1229 (1265)
....||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 3457999999999999999999999999999999999999999999999764 7899999999999976 999999999
Q ss_pred CEEEEecChhhhhhcCCcHHHHHH
Q 000830 1230 GKIIEQGTHSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1230 G~Ive~Gt~~eLl~~~~g~f~~l~ 1253 (1265)
|+|+|.|+++++.+++...|.+.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHH
Confidence 999999999999886666776643
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=346.54 Aligned_cols=172 Identities=40% Similarity=0.677 Sum_probs=161.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 245899999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000830 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541 (1265)
Q Consensus 462 ~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~i 541 (1265)
|++|++.+|+.|++||+ ||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEE
Q 000830 542 LLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRKI 596 (1265)
Q Consensus 542 lllDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i 596 (1265)
|||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 48999999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=368.31 Aligned_cols=219 Identities=29% Similarity=0.521 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCCC--Ch
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1265)
.|+++|++|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3589999999999999999999999999999999999984 899999999988653 33
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCC---CCHHH----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDD---ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
..+++.++|++|++.+|+.|++||+.++... ...++ +.++++..++. +..+......+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALW-------DEVKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCC-------chhHHHHhCChhhcCHHHH
Confidence 4668889999999999999999999875311 11111 22223222221 1122345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999988
Q ss_pred ccCC
Q 000830 606 ISNP 609 (1265)
Q Consensus 606 ~~~~ 609 (1265)
.+.+
T Consensus 233 ~~~~ 236 (250)
T PRK14262 233 VERP 236 (250)
T ss_pred HhCC
Confidence 7643
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=361.17 Aligned_cols=201 Identities=32% Similarity=0.514 Sum_probs=168.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChH---HHhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 458 (1265)
++++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 24599999999999999999999999999999999999999999999999999876543 4678
Q ss_pred heeEEccCCcccc-ccHHHHhccCCCC--CCH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 459 QIGLVNQEPALFA-TTIRENILYGKDD--ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~-~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
.++|++|++.+|. .|++||+.++... ... +++.++++..++. ........+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-----------HKADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHH
Confidence 8999999999996 5999999875211 111 2222333332222 22334456899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCE
Q 000830 532 SRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1265)
Q Consensus 532 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~ 595 (1265)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998875 48999999999999976 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=365.23 Aligned_cols=213 Identities=34% Similarity=0.529 Sum_probs=173.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh---HHHh
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLR 457 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r 457 (1265)
|+++||+|+|++.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996431 1258999999999999999999999999999999999999999999999999987764 5678
Q ss_pred hheeEEccCC--ccc-cccHHHHhccCCCC---CCHHHHHHHHHHhcHHHHHhcCccccc-ccccCCCCCCChHHHHHHH
Q 000830 458 QQIGLVNQEP--ALF-ATTIRENILYGKDD---ATMEEITRAAKLSEAMSFISNLPERFE-TQVGERGIQLSGGQKQRIA 530 (1265)
Q Consensus 458 ~~i~~v~Q~~--~lf-~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqria 530 (1265)
++++|++|++ .++ ..|++||+.++... ...++..+.+ +.+.+..+ |+. ......+.+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8999999999 344 46999999764211 1111111110 01223333 232 3456677899999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 531 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998753 8999999999999874 9999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=358.99 Aligned_cols=210 Identities=30% Similarity=0.450 Sum_probs=183.6
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh----HHHhh
Q 000830 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL----KWLRQ 458 (1265)
Q Consensus 383 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~----~~~r~ 458 (1265)
.+.|+.|+|+.+ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 469999999999999999999999999999999999999999999999998866542 23567
Q ss_pred heeEEccCCccccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
.++|++|++.+|+.|++||+.++.+. ..++..++++..++.+.+..+|.|+++..+....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 89999999999988999999987542 34455666777777777888899999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHH--HHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCE
Q 000830 539 PSILLLDEATSALDAESENSVQE--ALDRVM-VGRTTVVVAHRLSTIRNADVIAVVQGRK 595 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~--~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~ 595 (1265)
|++|||||||++||+.+...+.+ .++.+. .++|+|++||+++.+..||++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988887 455443 3799999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=367.27 Aligned_cols=212 Identities=28% Similarity=0.447 Sum_probs=180.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 35999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEccCCcc-ccccHHHHhccCCCCC--CH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 462 LVNQEPAL-FATTIRENILYGKDDA--TM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 462 ~v~Q~~~l-f~~ti~~ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
|++|++.+ +..|++||+.++.... .. +.+.++++.. |++........+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHHH
Confidence 99999987 5669999998864211 11 1122222222 23333455667899999999999999
Q ss_pred hc------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 535 IV------KNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 535 l~------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
|+ .+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 48999999999999875 999999999999999999887
Q ss_pred cc
Q 000830 606 IS 607 (1265)
Q Consensus 606 ~~ 607 (1265)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 64
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=369.19 Aligned_cols=223 Identities=25% Similarity=0.449 Sum_probs=184.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH-hhh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 459 (1265)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 459999999999999999999999999999999999999999999999999987776554 456
Q ss_pred eeEEccCCccccc-cHHHHhccCCCCCCH----------HHH--HHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDDATM----------EEI--TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 460 i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~----------~~~--~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
++|++|++.+|+. |++||+.++...... ... ........+.+.++.+ |++......+.+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999986 999999986321000 000 0000111122334443 455566778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcc
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1265)
||++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988753 7899999999999866 9999999999999999988
Q ss_pred hhccC
Q 000830 604 ELISN 608 (1265)
Q Consensus 604 ~l~~~ 608 (1265)
++...
T Consensus 240 ~~~~~ 244 (255)
T PRK11300 240 EIRNN 244 (255)
T ss_pred HHhhC
Confidence 87643
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=372.02 Aligned_cols=217 Identities=28% Similarity=0.434 Sum_probs=178.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCC--CCChHHHhhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIK--GLDLKWLRQQ 459 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 459 (1265)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 35999999999999999999999999999999999999999999999999985 3344567889
Q ss_pred eeEEccCCc--cccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHh
Q 000830 460 IGLVNQEPA--LFATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 460 i~~v~Q~~~--lf~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal 535 (1265)
|+||+|++. ++..|+.+|+.++.. ....++..+. +.+.+..+ |++........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 567799999987521 1122222111 11112211 122223445678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 536 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998875 48999999999999865 999999999999999999887654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=359.60 Aligned_cols=201 Identities=25% Similarity=0.491 Sum_probs=170.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 458999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEecCCCCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||++.+|.+ |++||+.++.. ..+ ++++.++++..+ ++........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLE-----------LSEYANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcC-----------ChHHHhCcHhhCCHHHHHHHHHHHH
Confidence 99999999975 99999976421 111 123334444443 3333444556899999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~G 1236 (1265)
++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999875 47899999999999876 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=368.32 Aligned_cols=227 Identities=30% Similarity=0.499 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----cceEEECCeeCCC--CCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--LDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~ 453 (1265)
.++++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 45999999999999999999999999999999999999874 8999999999864 344
Q ss_pred HHHhhheeEEccCCccccc-cHHHHhccCCCC--C-CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHH
Q 000830 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKDD--A-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1265)
..+|+.++|++|++.+|+. |+.||+.++... . ..++..+.+... ...+ .+..+........+.+||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~--l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS--LRGA-ALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHc-CcchhhhhhhcCCcccCCHHHHHHH
Confidence 5678889999999999985 999999865321 1 222222221110 0101 1111111223445678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 530 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999999886 999999999999999999998765
Q ss_pred CchHH
Q 000830 609 PNSAY 613 (1265)
Q Consensus 609 ~~~~~ 613 (1265)
+...+
T Consensus 238 ~~~~~ 242 (252)
T PRK14272 238 PRDER 242 (252)
T ss_pred cCcHH
Confidence 43333
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=382.77 Aligned_cols=212 Identities=29% Similarity=0.465 Sum_probs=184.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCC----CHHHHh
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRL----NLKSLR 1093 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~l~~lR 1093 (1265)
|++ |++++|.+ .. + |+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +....|
T Consensus 2 l~~-~l~k~~~~---~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999963 22 3 99999999999999999999999999999999999999999999998653 244568
Q ss_pred cccEEEecCCCCCc-ccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000830 1094 KHIALVQQEPALFA-TSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~-gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALl 1172 (1265)
++++||||++.+|. .|++||+.++.....++++.++++..++.++.+.. ..+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHHHHH
Confidence 89999999999996 59999999875444456677777777765554443 3579999999999999999
Q ss_pred cCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCC
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246 (1265)
Q Consensus 1173 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~ 1246 (1265)
++|++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999998764 6899999999998876 99999999999999999999988654
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=360.37 Aligned_cols=205 Identities=37% Similarity=0.632 Sum_probs=170.3
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeE
Q 000830 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1265)
Q Consensus 383 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1265)
+++|++++|++. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999742 2459999999999999999999999999999999999999999999999999987777788899999
Q ss_pred EccCCc--cccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 463 VNQEPA--LFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 463 v~Q~~~--lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
++|++. +++.|++||+.++... ....+..+ .+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999984 5678999999875321 12211111 111222222 233344566788999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCE
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~ 595 (1265)
|++|||||||++||+.++..+.+.|.++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998875 48999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=376.37 Aligned_cols=215 Identities=22% Similarity=0.417 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++|++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 459999999999999999999999999999999999999999999999999876 4457788999
Q ss_pred EEccCCccccc-cHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 462 LVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
|+||++.+|+. |+.||+.+.... ...++..+. +.+.+..+ |++........+||||||||++|||||+.+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999763211 111221111 11223333 344455666788999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
|++|||||||++||+.+.+.+++.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999998778999999999999876 99999999999999999998854
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=372.57 Aligned_cols=221 Identities=29% Similarity=0.496 Sum_probs=182.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCCC--C
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGL--D 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~ 452 (1265)
..|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 358999999999999999999999999999999999864 4999999999988643 3
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCC--C-CHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--A-TME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
...+|++++||+|++.+|+.|++||+.++... . ... ++.++++..++ .++........+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAAL-------WDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCC-------ccchhhHhhCChhhCCHHH
Confidence 34578899999999999988999999976321 1 111 12222222221 1111223456678899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcch
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1265)
|||++|||||+.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999865 99999999999999999999
Q ss_pred hccCCc
Q 000830 605 LISNPN 610 (1265)
Q Consensus 605 l~~~~~ 610 (1265)
+.+++.
T Consensus 268 ~~~~~~ 273 (286)
T PRK14275 268 LFTNPK 273 (286)
T ss_pred HHhCCC
Confidence 876543
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=375.27 Aligned_cols=220 Identities=31% Similarity=0.497 Sum_probs=187.7
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCcEEEECCcccCCC--C
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-----PTAGKVMVDGIDIKRL--N 1088 (1265)
Q Consensus 1016 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~~--~ 1088 (1265)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999974 358999999999999999999999999999999999986 6899999999998753 4
Q ss_pred HHHHhcccEEEecCCCCCcccHHHHhccCCCC-------------------CCHHHHHHHHHHhchHHHHHhCCCCcccc
Q 000830 1089 LKSLRKHIALVQQEPALFATSIYENILYGKDG-------------------ASEGEVIEAAKLANAHSFISALPEGYSTK 1149 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~-------------------~sd~ei~~al~~a~l~~~i~~lp~Gldt~ 1149 (1265)
...+|++++|+||++.+|.+|++||+.++... ..++++.++++..++. .++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHH
Confidence 56788999999999999999999999865211 0123344555554443 233445
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcCCceEEEEecCchhhhc-cCEE-EEE
Q 000830 1150 VGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN-ADQI-SVI 1227 (1265)
Q Consensus 1150 vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~DrI-~vl 1227 (1265)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56677889999999999999999999999999999999999999999999998877899999999999876 9997 567
Q ss_pred eCCEEEEecChhhhhhcC
Q 000830 1228 ESGKIIEQGTHSSLVENE 1245 (1265)
Q Consensus 1228 ~~G~Ive~Gt~~eLl~~~ 1245 (1265)
++|++++.|+++++.+..
T Consensus 274 ~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 274 TGGELVEYDDTDKIFENP 291 (305)
T ss_pred cCCEEEEeCCHHHHHhCc
Confidence 999999999999997643
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=368.87 Aligned_cols=220 Identities=33% Similarity=0.507 Sum_probs=183.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCC--CC
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 452 (1265)
+.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 3589999999999999999999999999999999999985 48999999998854 34
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCC---CCH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD---ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
...++++++||+|++.+|+.|++||+.++... ... +.+.++++..++.+++ .......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 56778899999999999999999999875311 111 1223333333332222 223456678899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe-----CCEEEEe
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ-----GRKIVKT 599 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~-----~G~i~~~ 599 (1265)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988778999999999999876 99999998 5999999
Q ss_pred eCcchhccCC
Q 000830 600 GSHEELISNP 609 (1265)
Q Consensus 600 g~~~~l~~~~ 609 (1265)
|+++++.+.+
T Consensus 236 ~~~~~~~~~~ 245 (259)
T PRK14260 236 GVTTQIFSNP 245 (259)
T ss_pred CCHHHHhcCC
Confidence 9999987543
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=367.25 Aligned_cols=227 Identities=26% Similarity=0.428 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC---CcEEEECCcccCCC-----C
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT---AGKVMVDGIDIKRL-----N 1088 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~~-----~ 1088 (1265)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 45899999999999999999999999999999999999986 49999999998653 3
Q ss_pred HHHHhcccEEEecCCCCCc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhchHHHHHhCCCCccccccCC
Q 000830 1089 LKSLRKHIALVQQEPALFA-TSIYENILYGKDG--------------ASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153 (1265)
Q Consensus 1089 l~~lR~~i~~VpQdp~LF~-gTIreNl~~g~~~--------------~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~ 1153 (1265)
...+|++++|+||++.+|. .|+++|+.++... ...+++.++++..++.+.. ...
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 4567889999999999887 5999999865311 0122345555555554333 334
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCC
Q 000830 1154 GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESG 1230 (1265)
Q Consensus 1154 G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G 1230 (1265)
..+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 457999999999999999999999999999999999999999999999763 7899999999998755 9999999999
Q ss_pred EEEEecChhhhhhcCCcHHHHHHHHhhccC
Q 000830 1231 KIIEQGTHSSLVENEDGAYFKLINLQQRQD 1260 (1265)
Q Consensus 1231 ~Ive~Gt~~eLl~~~~g~f~~l~~~~~~~~ 1260 (1265)
++++.|+++++ . .....+++.......
T Consensus 230 ~i~~~g~~~~~-~--~~~~~~~~~~~~~~~ 256 (262)
T PRK09984 230 HVFYDGSSQQF-D--NERFDHLYRSINRVE 256 (262)
T ss_pred EEEEeCCHHHh-c--cHHHHHHHhhhhccc
Confidence 99999999997 3 345677776655443
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=360.34 Aligned_cols=201 Identities=35% Similarity=0.581 Sum_probs=170.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCC--CCHHHHhcc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKR--LNLKSLRKH 1095 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--~~l~~lR~~ 1095 (1265)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 358999999999999999999999999999999999999999999999999853 455678899
Q ss_pred cEEEecCCCCCc-ccHHHHhccCCC---CCCHH----HHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1096 IALVQQEPALFA-TSIYENILYGKD---GASEG----EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1096 i~~VpQdp~LF~-gTIreNl~~g~~---~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
++|+||+|.+|. .|++||+.++.. ..+.+ ++.++++..++ +..+.....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL-----------ADKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------HhHhhhCccccCHHHHHHHHH
Confidence 999999999986 699999976421 22222 23333444333 333344446899999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCEE
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKI 1232 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~I 1232 (1265)
|||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999998754 7899999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=359.84 Aligned_cols=206 Identities=33% Similarity=0.516 Sum_probs=169.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh---HHHhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL---KWLRQ 458 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 458 (1265)
++++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 358999999999999999999999999999999999999999999999999887654 34678
Q ss_pred heeEEccCCccccc-cHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHh
Q 000830 459 QIGLVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal 535 (1265)
.++||+|++.+|+. |++||+.++... ...++..+.+ .+.+..+ |++........+||||||||++|||||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV-----PAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999985 999999875321 1222211111 1122222 233334445578999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1265)
Q Consensus 536 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i 596 (1265)
+.+|+++||||||++||+++...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999874 58999999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=406.94 Aligned_cols=104 Identities=34% Similarity=0.557 Sum_probs=94.4
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHhccCC---CEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhh
Q 000830 1145 GYST-KVGERGVQLSGGQKQRVAIARAVLKNP---EILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIK 1219 (1265)
Q Consensus 1145 Gldt-~vge~G~~LSgGQkQrlaLARALlr~p---~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~ 1219 (1265)
|++. .++.....||||||||++|||||+++| +++||||||++||+.+.+.+.+.|+++. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 6654 467778899999999999999999999 9999999999999999999999999875 4789999999999999
Q ss_pred ccCEEEEE------eCCEEEEecChhhhhhcCCcH
Q 000830 1220 NADQISVI------ESGKIIEQGTHSSLVENEDGA 1248 (1265)
Q Consensus 1220 ~~DrI~vl------~~G~Ive~Gt~~eLl~~~~g~ 1248 (1265)
.||+|++| ++|+|++.|+++++.+++.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999 799999999999999755443
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=369.91 Aligned_cols=219 Identities=31% Similarity=0.557 Sum_probs=182.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCC--CC
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKG--LD 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~ 452 (1265)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45999999999963 359999999999999999999999999999999999997 689999999999864 34
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCC--CC---HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHH
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD--AT---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1265)
...++++++||+|++.+|+.|++||+.++... .. .+++.++++..+ +..........++.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAA-------LWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC-------CCchhHHHHhCCcccCCHHHHH
Confidence 56678899999999999988999999875311 11 122233333222 2111122356677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEE-EEeCCEEEEeeCcchh
Q 000830 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIA-VVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 528 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~-~l~~G~i~~~g~~~~l 605 (1265)
|++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998767899999999999876 99975 5799999999999888
Q ss_pred ccC
Q 000830 606 ISN 608 (1265)
Q Consensus 606 ~~~ 608 (1265)
..+
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 654
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=369.03 Aligned_cols=214 Identities=27% Similarity=0.445 Sum_probs=183.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 359999999999999999999999999999999999999999999999999988888888889
Q ss_pred eeEEccCCcccc-ccHHHHhccCC-CC------CCH---HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHH
Q 000830 460 IGLVNQEPALFA-TTIRENILYGK-DD------ATM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1265)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~-~~------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1265)
++||+|++.+|. .|++||+.++. +. ... +++.++++..+ ++......+.+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG-----------ITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcC-----------CHHHhcCCcccCChHHHHH
Confidence 999999998876 59999998753 11 011 12222333322 3333455677899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 529 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
++||||++++|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 7899999999998865 999999999999999998887
Q ss_pred cc
Q 000830 606 IS 607 (1265)
Q Consensus 606 ~~ 607 (1265)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=378.99 Aligned_cols=229 Identities=21% Similarity=0.371 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC----CCcceEEECCeeCCCCChHH
Q 000830 381 HIEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE----PLSGEILLDGNNIKGLDLKW 455 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~~~~~~~~~ 455 (1265)
-|+++|++++|+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++...+.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999632 23469999999999999999999999999999999999986 58999999999998887765
Q ss_pred Hh----hheeEEccCCc--ccc-ccHHHHhccCCC---C-----CCHHHHHHHHHHhcHHHHHhc--CcccccccccCCC
Q 000830 456 LR----QQIGLVNQEPA--LFA-TTIRENILYGKD---D-----ATMEEITRAAKLSEAMSFISN--LPERFETQVGERG 518 (1265)
Q Consensus 456 ~r----~~i~~v~Q~~~--lf~-~ti~~ni~~~~~---~-----~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~g 518 (1265)
++ +.|+||+|+|. +++ .||.+|+..... . ....+.. ..+.+.+.. |++ ........+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~~gL~~-~~~~~~~~p 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK-----RRAIELLHRVGIKD-HKDAMRSFP 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHH-----HHHHHHHHHCCCCC-hHHHHhCCc
Confidence 43 47999999996 343 489999864210 0 0101111 111222222 221 112245667
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCE
Q 000830 519 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRK 595 (1265)
Q Consensus 519 ~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~ 595 (1265)
.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998753 8999999999999976 99999999999
Q ss_pred EEEeeCcchhccCCchHHHH
Q 000830 596 IVKTGSHEELISNPNSAYAA 615 (1265)
Q Consensus 596 i~~~g~~~~l~~~~~~~~~~ 615 (1265)
|++.|+.+++..++...|.+
T Consensus 237 ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 237 TVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEECCHHHHHhCCCCHHHH
Confidence 99999999998776666755
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=367.04 Aligned_cols=212 Identities=28% Similarity=0.446 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC--------CcEEEECCcccCCCCH
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT--------AGKVMVDGIDIKRLNL 1089 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~--------~G~I~idG~di~~~~l 1089 (1265)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 35899999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcccEEEecCCC-CCcccHHHHhccCCC-C------CC---HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCC
Q 000830 1090 KSLRKHIALVQQEPA-LFATSIYENILYGKD-G------AS---EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLS 1158 (1265)
Q Consensus 1090 ~~lR~~i~~VpQdp~-LF~gTIreNl~~g~~-~------~s---d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LS 1158 (1265)
..+|+.++|+||++. +|..|++||+.++.. . .+ ++.++++++..+ +++.++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG-----------ATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC-----------cHhhhcCCcccCC
Confidence 888889999999986 578899999977521 1 11 122344444444 4444555667899
Q ss_pred hhHHHHHHHHHHhc---------cCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEE
Q 000830 1159 GGQKQRVAIARAVL---------KNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISV 1226 (1265)
Q Consensus 1159 gGQkQrlaLARALl---------r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~v 1226 (1265)
||||||++|||||+ .+|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998754 6899999999999975 999999
Q ss_pred EeCCEEEEecChhhhhh
Q 000830 1227 IESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1227 l~~G~Ive~Gt~~eLl~ 1243 (1265)
|++|++++.|+++++++
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999875
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=383.80 Aligned_cols=234 Identities=33% Similarity=0.534 Sum_probs=190.7
Q ss_pred ccEEEEeEEEECCCC--------CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCee--CC
Q 000830 380 GHIEFKDVSFCYPSR--------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN--IK 449 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~--------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~--~~ 449 (1265)
.-++++|+++.|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ +.
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 457899999999742 23568999999999999999999999999999999999999999999999987 23
Q ss_pred CCChHHHhhheeEEccCCc--ccc-ccHHHHhccCCCCCCH-HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 450 GLDLKWLRQQIGLVNQEPA--LFA-TTIRENILYGKDDATM-EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 450 ~~~~~~~r~~i~~v~Q~~~--lf~-~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
.-+....|+++-+|+|||+ |-+ .||.++|.-....... ..-....+.+.+.+.+ .||.. ....++.+|||||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V-gL~~~---~l~ryP~elSGGQ 434 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV-GLPPE---FLDRYPHELSGGQ 434 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc-CCCHH---HHhcCchhcCcch
Confidence 2234567889999999996 444 4999999743211100 0111112333333333 34422 4677888999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCc
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1265)
||||||||||+.+|+++|+|||||+||+-+...|.+.|+++.+ |.|.|+|||+++.++. ||||+||++|+|||.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999998864 8999999999999988 999999999999999999
Q ss_pred chhccCCchHHHHHH
Q 000830 603 EELISNPNSAYAALV 617 (1265)
Q Consensus 603 ~~l~~~~~~~~~~~~ 617 (1265)
+++.+.+...|.+..
T Consensus 515 ~~v~~~p~h~Ytr~L 529 (539)
T COG1123 515 EKVFENPQHPYTRKL 529 (539)
T ss_pred HHHhcCCCChHHHHH
Confidence 999998888887654
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=364.79 Aligned_cols=228 Identities=25% Similarity=0.393 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC----CCcEEEECCcccCCCCHHHH
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP----TAGKVMVDGIDIKRLNLKSL 1092 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p----~~G~I~idG~di~~~~l~~l 1092 (1265)
.|+++||+++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 2589999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcccEEEecCCC-CCc--ccHHHHhccC----CCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000830 1093 RKHIALVQQEPA-LFA--TSIYENILYG----KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1093 R~~i~~VpQdp~-LF~--gTIreNl~~g----~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrl 1165 (1265)
++.++||||+|. .|. .|+.+|+... .....+++++++++..++.++ ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 443 4888886431 112234566777776665432 1234455678999999999
Q ss_pred HHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1166 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl 1242 (1265)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999875 9999999999999999999998
Q ss_pred hcCCc-HHHHHHHHhhc
Q 000830 1243 ENEDG-AYFKLINLQQR 1258 (1265)
Q Consensus 1243 ~~~~g-~f~~l~~~~~~ 1258 (1265)
++... .++.++..+..
T Consensus 230 ~~~~~~~~~~~~~~~~~ 246 (254)
T PRK10418 230 NAPKHAVTRSLVSAHLA 246 (254)
T ss_pred hCCCCHHHHHHHHhhhh
Confidence 75444 44556655443
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=338.03 Aligned_cols=220 Identities=29% Similarity=0.497 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHH-Hhcc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS-LRKH 1095 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~ 1095 (1265)
.++++||+..|.. ..+|++|||++++||+++++||||+||||++++++|+.+|.+|+|.++|.||...+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999963 46999999999999999999999999999999999999999999999999999998887 5889
Q ss_pred cEEEecCCCCCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000830 1096 IALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174 (1265)
Q Consensus 1096 i~~VpQdp~LF~g-TIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~ 1174 (1265)
|+||||...+|.. ||+|||.+|.-...+++-++ ...++..+-+| -|.......+.+|||||+|.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999965 99999998732222111111 00122223344 244455667789999999999999999999
Q ss_pred CCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1175 PEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1175 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
|++|+|||||.+|-|.--+.|.++|+++.+ +-||+.|-++.....+ +||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999885 4599999999999775 999999999999999999999974
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=370.45 Aligned_cols=218 Identities=31% Similarity=0.536 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCC--CChHHHhhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQ 459 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 459 (1265)
|+++|++++|++ ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2358999999999999999999999999999999999999999999999999852 234567889
Q ss_pred eeEEccCC--ccccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHh
Q 000830 460 IGLVNQEP--ALFATTIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 460 i~~v~Q~~--~lf~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal 535 (1265)
|+|++|++ .+|+.|+.||+.++... .+.++..+. .. +.+..+ |++......+.+||||||||++|||||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~--~~---~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR--VK---EALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH--HH---HHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999997 57888999999876321 122222111 11 112221 222223345678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 536 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999875 48999999999999875 999999999999999999988754
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=360.22 Aligned_cols=198 Identities=28% Similarity=0.516 Sum_probs=164.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeE
Q 000830 383 EFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGL 462 (1265)
Q Consensus 383 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 462 (1265)
+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 35899999999999999999999999999999999999999999999998764 46778999
Q ss_pred EccCCcc---ccccHHHHhccCCCCC-------CH---HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHH
Q 000830 463 VNQEPAL---FATTIRENILYGKDDA-------TM---EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 463 v~Q~~~l---f~~ti~~ni~~~~~~~-------~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 529 (1265)
|+|++.+ ++.|++||+.++.... .. +++.++++..+ ++........+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVG-----------LSELADRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcC-----------CHHHHhCCcccCCHHHHHHH
Confidence 9999976 5679999998764311 11 11222222222 22233445678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 530 aiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998875 58999999999999876 9999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=367.42 Aligned_cols=220 Identities=28% Similarity=0.474 Sum_probs=185.3
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCC----
Q 000830 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIK---- 449 (1265)
Q Consensus 379 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~---- 449 (1265)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 467999999999973 3599999999999999999999999999999999999975 7999999998774
Q ss_pred CCChHHHhhheeEEccCCccccccHHHHhccCCC--CCC-----HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCC
Q 000830 450 GLDLKWLRQQIGLVNQEPALFATTIRENILYGKD--DAT-----MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1265)
Q Consensus 450 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 522 (1265)
..+...+++.++|++|++.+|++|++||+.++.. ... .+++.++++.+++ .+++.+..+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAAL-------WDEVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCC-------chhhhHHHhCCcccCC
Confidence 2344567889999999999999999999987531 111 1223333333322 2233445667788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeC
Q 000830 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 523 gGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 601 (1265)
||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988778999999999999865 99999999999999999
Q ss_pred cchhccC
Q 000830 602 HEELISN 608 (1265)
Q Consensus 602 ~~~l~~~ 608 (1265)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9988754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=355.77 Aligned_cols=202 Identities=36% Similarity=0.585 Sum_probs=176.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
++++||+++|+. .++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 468999999999999999999999999999999999999999999999987643 4678899
Q ss_pred EEecCCCCCcc-cHHHHhccCC-CC-----CCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFAT-SIYENILYGK-DG-----ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~-~~-----~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||+|.+|.+ |++||+.++. +. ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999997542 11 12345667777777776655544 3799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt 1237 (1265)
++++|+++||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 7899999999999875 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=380.68 Aligned_cols=212 Identities=29% Similarity=0.465 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCC----ChHHHh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL----DLKWLR 457 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r 457 (1265)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 89999963 2 23 89999999999999999999999999999999999999999999998653 234567
Q ss_pred hheeEEccCCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhc
Q 000830 458 QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~ 536 (1265)
++++||+|++.+|+. |++||+.++......+++.+.++.. |++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL-----------GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc-----------CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 889999999999975 9999999875433333333333333 2333445566789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccCCc
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPN 610 (1265)
Q Consensus 537 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 610 (1265)
.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999988753 7899999999998866 99999999999999999999987653
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=361.84 Aligned_cols=210 Identities=29% Similarity=0.444 Sum_probs=170.7
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCcEEEECCcccCCCCHHHHh
Q 000830 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD---PTAGKVMVDGIDIKRLNLKSLR 1093 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~~~l~~lR 1093 (1265)
+.|+||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998542 3579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cccEEEecCCCCCcc-cHHHHhccCCC----CCCHHHHHHHHHHhchHH-HHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000830 1094 KHIALVQQEPALFAT-SIYENILYGKD----GASEGEVIEAAKLANAHS-FISALPEGYSTKVGERGVQLSGGQKQRVAI 1167 (1265)
Q Consensus 1094 ~~i~~VpQdp~LF~g-TIreNl~~g~~----~~sd~ei~~al~~a~l~~-~i~~lp~Gldt~vge~G~~LSgGQkQrlaL 1167 (1265)
++++|+||++.+|.+ |++||+.++.. ....++... ...++ .++.+ +++.........||||||||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRK----KRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHH----HHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHH
Confidence 999999999999987 99999986421 111111110 01111 22221 33333344556899999999999
Q ss_pred HHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCc-hhhh-ccCEEEEEeCCEEEEec
Q 000830 1168 ARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRL-STIK-NADQISVIESGKIIEQG 1236 (1265)
Q Consensus 1168 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl-~ti~-~~DrI~vl~~G~Ive~G 1236 (1265)
||||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||++ +.+. .||+|++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999875 478999999998 4554 59999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=358.54 Aligned_cols=205 Identities=24% Similarity=0.468 Sum_probs=171.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 359999999999999999999999999999999999999999999999987753 4577899
Q ss_pred EEccCCccccc-cHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 462 LVNQEPALFAT-TIRENILYGKDD--ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
|++|++.++.+ |++||+.++... ....+.. ..+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 999999874311 1111111 1122334333 344445566788999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998875 47899999999999865 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=366.70 Aligned_cols=225 Identities=24% Similarity=0.420 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCee-----CCCCChHH
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNN-----IKGLDLKW 455 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~-----~~~~~~~~ 455 (1265)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 358999999999999999999999999999999999999999999999998 77666544
Q ss_pred ----HhhheeEEccCCc--ccc-ccHHHHhccCC---CCCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 456 ----LRQQIGLVNQEPA--LFA-TTIRENILYGK---DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 456 ----~r~~i~~v~Q~~~--lf~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
.++.++||+|++. ++. .|+.+|+.+.. ......+..+ .+.+.+..++-+ ++..+..+.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3557999999984 444 48899986421 1111122211 233455555321 245677889999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCc
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSH 602 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 602 (1265)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988753 7899999999999975 999999999999999999
Q ss_pred chhccCCchHHH
Q 000830 603 EELISNPNSAYA 614 (1265)
Q Consensus 603 ~~l~~~~~~~~~ 614 (1265)
+++..++...|.
T Consensus 237 ~~~~~~~~~~~~ 248 (258)
T PRK11701 237 DQVLDDPQHPYT 248 (258)
T ss_pred HHHhcCCCCHHH
Confidence 998765444444
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=365.22 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=175.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--CCCCCcEEEECCcccCCCCHHHH-hc
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF--YDPTAGKVMVDGIDIKRLNLKSL-RK 1094 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~l~~l-R~ 1094 (1265)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 4589999999999999999999999999999999999 47999999999999988877664 45
Q ss_pred ccEEEecCCCCCcc-cHHHHhccCCCC---------CCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChh
Q 000830 1095 HIALVQQEPALFAT-SIYENILYGKDG---------ASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGG 1160 (1265)
Q Consensus 1095 ~i~~VpQdp~LF~g-TIreNl~~g~~~---------~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgG 1160 (1265)
.++|+||+|.+|.+ |++||+.+.... .+. +.+.++++..++.+. -.+..+. ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE------FLNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh------hcccccc---cCcCHH
Confidence 69999999999876 899998653110 111 223333333333210 1122221 249999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc--cCEEEEEeCCEEEEecC
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN--ADQISVIESGKIIEQGT 1237 (1265)
Q Consensus 1161 QkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~--~DrI~vl~~G~Ive~Gt 1237 (1265)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875 47899999999999986 79999999999999999
Q ss_pred hhhhhh
Q 000830 1238 HSSLVE 1243 (1265)
Q Consensus 1238 ~~eLl~ 1243 (1265)
++++..
T Consensus 229 ~~~~~~ 234 (243)
T TIGR01978 229 VELAKE 234 (243)
T ss_pred HHHhcc
Confidence 986543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=329.16 Aligned_cols=213 Identities=31% Similarity=0.554 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|.|+|||.|+.. ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999974 3448999999999999999999999999999999999999999999999999987 5678899999
Q ss_pred EEecCCCCCc-ccHHHHhccCCC--CCCHH----HHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFA-TSIYENILYGKD--GASEG----EVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~-gTIreNl~~g~~--~~sd~----ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
+++-+.-|+. -|.||||.|... +.++. ++.+..+.-++.+. +|+.+| +||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHHHh----hhchhhHHHHHHHHH
Confidence 9997777875 499999987421 22233 33444444444444 344555 599999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMR-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
|+++|+|++||||||+||.-+.+.+++-|++... +++||+-||-++.++. ||+|+++.+|+++..|+++++.+.
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999999875 8999999999999995 999999999999999999999763
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=366.05 Aligned_cols=221 Identities=25% Similarity=0.411 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 35999999999999999999999999999999999999999999999999998888888888899
Q ss_pred EEccCCccc-cccHHHHhccCCCCCCH-HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000830 462 LVNQEPALF-ATTIRENILYGKDDATM-EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNP 539 (1265)
Q Consensus 462 ~v~Q~~~lf-~~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~ 539 (1265)
|++|++.++ ..|++||+.++...... ...........+.+.+..+ |+.......+..||||||||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998654 56999999886321000 0000000001122223332 2333345567789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 540 SILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 540 ~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999998754 7899999999999954 99999999999999999888754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=366.95 Aligned_cols=218 Identities=32% Similarity=0.539 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCC--CCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 453 (1265)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999964 3589999999999999999999999999999999999974 79999999998853 345
Q ss_pred HHHhhheeEEccCCccccc-cHHHHhccCCCC---CCHHH----HHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKDD---ATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~---~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
..+|+.++|++|++.+|+. |++||+.++... ...++ +.++++..++ ..+........+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANL-------WNEVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-------chhhhhHhhCCcccCCHHH
Confidence 6778899999999999975 999999865311 11111 2222222221 1112234456678899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe------CCEEEE
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ------GRKIVK 598 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~------~G~i~~ 598 (1265)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988777999999999999865 99999997 899999
Q ss_pred eeCcchhccC
Q 000830 599 TGSHEELISN 608 (1265)
Q Consensus 599 ~g~~~~l~~~ 608 (1265)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998654
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=356.80 Aligned_cols=205 Identities=34% Similarity=0.537 Sum_probs=171.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCC--CChHHHhhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG--LDLKWLRQQ 459 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 459 (1265)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 358999999999999999999999999999999999999999999999998853 344567889
Q ss_pred eeEEccCCcccc-ccHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHh
Q 000830 460 IGLVNQEPALFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 460 i~~v~Q~~~lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal 535 (1265)
++|++|++.+|+ .|++||+.++.. ....++..+. +.+.+..+ |++........+||||||||++|||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999987 599999987532 1122221111 12233333 344455666789999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKI 596 (1265)
Q Consensus 536 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i 596 (1265)
+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 47999999999999975 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=359.07 Aligned_cols=212 Identities=25% Similarity=0.383 Sum_probs=172.8
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHH---H
Q 000830 381 HIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---L 456 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 456 (1265)
.|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974221 35899999999999999999999999999999999999999999999999998776643 2
Q ss_pred -hhheeEEccCCccccc-cHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHH
Q 000830 457 -RQQIGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532 (1265)
Q Consensus 457 -r~~i~~v~Q~~~lf~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiA 532 (1265)
++.++|++|++.+|.. |++||+.++.. .....+.. ..+.+.+..+ |++........+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-----NGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3579999999999886 99999986421 11111111 1111222222 222233445678999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhccCEEEEEeCCEEEEe
Q 000830 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRNADVIAVVQGRKIVKT 599 (1265)
Q Consensus 533 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 599 (1265)
|||+.+|++|||||||++||+.+...+.+.|+++. + ++|+|++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998874 3 7899999999999888999999999999764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=354.59 Aligned_cols=201 Identities=28% Similarity=0.461 Sum_probs=168.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5789999999632 2 39999999999999999999999999999999999999999999999876554 357899
Q ss_pred EEccCCccccc-cHHHHhccCCC-CC-----CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 462 LVNQEPALFAT-TIRENILYGKD-DA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~-~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
|++|++.+|.+ |++||+.++.. .. ..+++.++++..++ +........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGL-----------AGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCC-----------HHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999986 99999987642 11 12223333333333 222334556899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
++.+|++|||||||++||++++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 38999999999999876 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=357.65 Aligned_cols=208 Identities=28% Similarity=0.473 Sum_probs=171.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChH---HHhh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK---WLRQ 458 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 458 (1265)
|+++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 24589999999999999999999999999999999999999999999999998876544 3678
Q ss_pred heeEEccCCccc-cccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHh
Q 000830 459 QIGLVNQEPALF-ATTIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 459 ~i~~v~Q~~~lf-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal 535 (1265)
.++|++|++.++ +.|++||+.++.. ..+.++..+.+. +.++.+ |++........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS-----AALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHH-----HHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 999999999875 5699999987531 122322222111 112221 222234455678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVK 598 (1265)
Q Consensus 536 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~ 598 (1265)
+.+|++|||||||++||+.+.+.+.+.|.++. ++.|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999998875 47999999999999976 99999999999863
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=375.35 Aligned_cols=200 Identities=27% Similarity=0.462 Sum_probs=172.0
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccEEEecCCCCCcc-cHH
Q 000830 1033 VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIY 1111 (1265)
Q Consensus 1033 ~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~g-TIr 1111 (1265)
.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 458999999999999999999999999999999999999999999999999976 445678999999999999976 999
Q ss_pred HHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcC
Q 000830 1112 ENILYGKD--GAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATS 1185 (1265)
Q Consensus 1112 eNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS 1185 (1265)
||+.+... ..+ ++++.++++..++.+. ......+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99976321 122 2234455555554332 223345799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1186 ALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1186 aLD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
+||+.+.+.+++.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 47899999999999976 999999999999999999999764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=364.92 Aligned_cols=220 Identities=32% Similarity=0.485 Sum_probs=184.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCC--CC
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKG--LD 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 452 (1265)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999963 3589999999999999999999999999999999999863 69999999999864 34
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCCC-----CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHH
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1265)
...+|++|+|++|++.+|+.|+.||+.++.... ..+.+.++++.+++.+.+ .......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHH
Confidence 456788999999999999889999998763211 112223333333332222 22345667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe---------CCEEE
Q 000830 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ---------GRKIV 597 (1265)
Q Consensus 528 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~---------~G~i~ 597 (1265)
|++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988778999999999999865 99999997 89999
Q ss_pred EeeCcchhccCC
Q 000830 598 KTGSHEELISNP 609 (1265)
Q Consensus 598 ~~g~~~~l~~~~ 609 (1265)
+.|+.+++...+
T Consensus 249 ~~g~~~~~~~~~ 260 (274)
T PRK14265 249 EFSPTEQMFGSP 260 (274)
T ss_pred EeCCHHHHHhCC
Confidence 999999987653
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=364.50 Aligned_cols=219 Identities=28% Similarity=0.439 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CcceEEECCeeCCCC--Ch
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP-----LSGEILLDGNNIKGL--DL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 453 (1265)
.+.+++++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999963 4599999999999999999999999999999999999987 799999999998643 34
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCCCC-----CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKDDA-----TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQR 528 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 528 (1265)
..+|+.++|++|++.+|+.|+.||+.++.... ..+++.++++..++.+. .....++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDE-------VKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchh-------hhhhhhCCcccCCHHHHHH
Confidence 46788899999999999899999998864211 11234444444433222 2223456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe--------CCEEEEe
Q 000830 529 IAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQ--------GRKIVKT 599 (1265)
Q Consensus 529 iaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~--------~G~i~~~ 599 (1265)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778999999999998865 99999996 8999999
Q ss_pred eCcchhccCC
Q 000830 600 GSHEELISNP 609 (1265)
Q Consensus 600 g~~~~l~~~~ 609 (1265)
|+++++++.+
T Consensus 238 g~~~~~~~~~ 247 (261)
T PRK14263 238 GPTAQIFQNP 247 (261)
T ss_pred CCHHHHHhCC
Confidence 9999987653
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=365.86 Aligned_cols=221 Identities=28% Similarity=0.512 Sum_probs=183.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----cceEEECCeeCCC--CC
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL-----SGEILLDGNNIKG--LD 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~ 452 (1265)
+.|+++|++|+|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 35899999999999999999999999999999999999985 8999999998753 34
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCC---CCH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDD---ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
...+|+.++|++|++.+|+.|++||+.++... .+. +.+.++++..++.+ ..+...+..+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD-------EIKHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hhhhHhcCCcccCCHHH
Confidence 45778899999999999999999999865211 111 12222333332221 12234566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeC-----CEEE
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQG-----RKIV 597 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~-----G~i~ 597 (1265)
|||++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998864 48999999999999875 999999999 9999
Q ss_pred EeeCcchhccCCc
Q 000830 598 KTGSHEELISNPN 610 (1265)
Q Consensus 598 ~~g~~~~l~~~~~ 610 (1265)
+.|+++++...+.
T Consensus 236 ~~~~~~~~~~~~~ 248 (261)
T PRK14258 236 EFGLTKKIFNSPH 248 (261)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999876543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=369.89 Aligned_cols=213 Identities=32% Similarity=0.543 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhe
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.++++|++++|+. ++.+|+||||+|++|+++|++||||||||||+++|+|++.|++|+|.++|.+...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999972 24699999999999999999999999999999999999999999999999988665 77888999
Q ss_pred eEEccCCccccc-cHHHHhccCC-----CC-CCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHH
Q 000830 461 GLVNQEPALFAT-TIRENILYGK-----DD-ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiAR 533 (1265)
|||||+|.+++. |++||+.|.. +. ...+.+.+.++..+ |++ .-..+..+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~-------L~~----~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFG-------LED----KANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcC-------Cch----hhCcchhhcCHHHHHHHHHHH
Confidence 999999998877 9999998742 11 11233444444332 332 114456789999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMV-G-RTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 534 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
||+.+|++|||||||++||+.+...+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999865 5 799999999999987 99999999999999998888654
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=366.01 Aligned_cols=230 Identities=27% Similarity=0.464 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCH-
Q 000830 1017 TIELRGVHFSYPSR------PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL- 1089 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l- 1089 (1265)
.|+++||+++|+.. .+.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999731 02468999999999999999999999999999999999999999999999999987765
Q ss_pred --HHHhcccEEEecCCC--CC-cccHHHHhccCCC---CCCHHHHHHHHHHhchHHHHHhCCCCccc-cccCCCCCCChh
Q 000830 1090 --KSLRKHIALVQQEPA--LF-ATSIYENILYGKD---GASEGEVIEAAKLANAHSFISALPEGYST-KVGERGVQLSGG 1160 (1265)
Q Consensus 1090 --~~lR~~i~~VpQdp~--LF-~gTIreNl~~g~~---~~sd~ei~~al~~a~l~~~i~~lp~Gldt-~vge~G~~LSgG 1160 (1265)
..+|+.++|+||++. ++ ..|+++|+.+... ..+.+ .....+.+.++.+ |+++ ........||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 347889999999983 43 4699999864211 11111 1122234445544 5653 455667789999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 000830 1161 QKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237 (1265)
Q Consensus 1161 QkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt 1237 (1265)
||||++|||||+.+|++|||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999998753 7899999999999986 99999999999999999
Q ss_pred hhhhhhcCCcHHHHHHH
Q 000830 1238 HSSLVENEDGAYFKLIN 1254 (1265)
Q Consensus 1238 ~~eLl~~~~g~f~~l~~ 1254 (1265)
++++.. .++.|..-+.
T Consensus 236 ~~~~~~-~~~~~~~~~~ 251 (268)
T PRK10419 236 VGDKLT-FSSPAGRVLQ 251 (268)
T ss_pred hhhccC-CCCHHHHHHH
Confidence 999986 5666654443
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=364.44 Aligned_cols=221 Identities=24% Similarity=0.371 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCC--------cceEEECCeeCCCCCh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL--------SGEILLDGNNIKGLDL 453 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~--------~G~i~~~g~~~~~~~~ 453 (1265)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999963 35999999999999999999999999999999999999998 9999999999988887
Q ss_pred HHHhhheeEEccCCc-cccccHHHHhccCCC-CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHH
Q 000830 454 KWLRQQIGLVNQEPA-LFATTIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAI 531 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~-lf~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriai 531 (1265)
..+++.++|++|++. +|..|++||+.++.. ...............+.+.+..+ |+++..+....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 788888999999986 567899999987632 11000000000001112223332 45566677788999999999999
Q ss_pred HHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 000830 532 SRAIV---------KNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599 (1265)
Q Consensus 532 ARal~---------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 599 (1265)
||||+ .+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 59999999999999999999999999998753 7999999999999865 999999999999999
Q ss_pred eCcchhcc
Q 000830 600 GSHEELIS 607 (1265)
Q Consensus 600 g~~~~l~~ 607 (1265)
|++++++.
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99988864
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=362.63 Aligned_cols=220 Identities=29% Similarity=0.530 Sum_probs=184.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCCC--ChH
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGL--DLK 454 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~~~ 454 (1265)
++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++... +..
T Consensus 4 l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 4 IEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 789999999963 459999999999999999999999999999999999874 4899999999998653 456
Q ss_pred HHhhheeEEccCCccccccHHHHhccCCC--CC-CHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHH
Q 000830 455 WLRQQIGLVNQEPALFATTIRENILYGKD--DA-TME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1265)
Q Consensus 455 ~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1265)
.+|++++|+||++.+|+.|++||+.++.. .. ..+ ++.++++..++.+++. ...+..+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHHH
Confidence 77889999999999999999999987532 11 112 2333344444333322 2245667899999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhc
Q 000830 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 528 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999876 9999999999999999999987
Q ss_pred cCCch
Q 000830 607 SNPNS 611 (1265)
Q Consensus 607 ~~~~~ 611 (1265)
..+..
T Consensus 234 ~~~~~ 238 (250)
T PRK14266 234 INPKD 238 (250)
T ss_pred hCCCC
Confidence 55333
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=360.48 Aligned_cols=211 Identities=40% Similarity=0.574 Sum_probs=178.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++|+|++ +++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 468999999974 3599999999999999999999999999999999999999999999999998765542 67899
Q ss_pred EEccCCccccc-cHHHHhccCCCC--CCH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 462 LVNQEPALFAT-TIRENILYGKDD--ATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
||+|++.+|.+ |++||+.++... .+. +++.++++..+ ++........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQ-----------LEGYANRKPSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999976 999999865321 111 12222222222 3334445567899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998753 8999999999999865 999999999999999998887654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=358.50 Aligned_cols=215 Identities=35% Similarity=0.522 Sum_probs=180.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999974 359999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCCccccc-cHHHHhccCCCCC--CHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccC
Q 000830 462 LVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~ 538 (1265)
|+||++.+|++ |++||+.++.... +..+.. ..+.+.+..++ +.........+||||||||++|||||+++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~~--l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELVQ--LEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHcC--CHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 9999998764311 111111 11223344332 22234455678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 539 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
|+++||||||++||+++++.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999998754 7999999999999866 999999999999999999998754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=369.36 Aligned_cols=214 Identities=32% Similarity=0.546 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhccc
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++||+.+|.. ...+|+||||+|++||.+|++||||||||||+++|+|+..|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999973 24689999999999999999999999999999999999999999999999998765 77889999
Q ss_pred EEEecCCCCCcc-cHHHHhccCC-----C-CCCHHHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000830 1097 ALVQQEPALFAT-SIYENILYGK-----D-GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQdp~LF~g-TIreNl~~g~-----~-~~sd~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1169 (1265)
|||||+|.++.. |++|||.+.. + ...++.+.+.++..++.+.- +. ....||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~----~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NK----KVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Cc----chhhcCHHHHHHHHHHH
Confidence 999999998865 9999998742 1 12245677788777775421 22 33569999999999999
Q ss_pred HhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC-C-ceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhc
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMR-K-RTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1170 ALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~-~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~ 1244 (1265)
||+.+|++|||||||++||+.+...+++.|++..+ + +||++.||.++.+.. ||||++|++|+++..|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999876 4 699999999999988 999999999999999999998763
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=342.69 Aligned_cols=220 Identities=30% Similarity=0.518 Sum_probs=187.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHH-hhhe
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQI 460 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 460 (1265)
++.+|++++|++ ..+++||||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|+||...++... |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 678999999963 569999999999999999999999999999999999999999999999999999998765 5679
Q ss_pred eEEccCCccccc-cHHHHhccCCCCC-----------CHHHHHHHH-HHhcHHHHHhcCcccccccccCCCCCCChHHHH
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDDA-----------TMEEITRAA-KLSEAMSFISNLPERFETQVGERGIQLSGGQKQ 527 (1265)
Q Consensus 461 ~~v~Q~~~lf~~-ti~~ni~~~~~~~-----------~~~~~~~~~-~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 527 (1265)
+--+|.+.+|++ ||.||+..+.... ...+-.++. +..++.+++ |++....+...+||+|||.
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----CCchhhcchhhcCChhHhH
Confidence 999999999987 9999998763211 000111121 222233333 4555566677789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcch
Q 000830 528 RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604 (1265)
Q Consensus 528 riaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 604 (1265)
|+.|||||+.+|++|+||||.++|.+.....+.+.|+++++ |.|+++|-||++.+.. ||||+||+.|+++.+|+|+|
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 99999999999999999999999999999999999999874 5999999999999977 99999999999999999999
Q ss_pred hccCC
Q 000830 605 LISNP 609 (1265)
Q Consensus 605 l~~~~ 609 (1265)
+.+++
T Consensus 237 V~~dp 241 (250)
T COG0411 237 VRNNP 241 (250)
T ss_pred HhcCH
Confidence 98764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=348.20 Aligned_cols=225 Identities=36% Similarity=0.603 Sum_probs=197.5
Q ss_pred cEEEEeEEEECCCCCCc---------------------ccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc
Q 000830 1017 TIELRGVHFSYPSRPEV---------------------VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075 (1265)
Q Consensus 1017 ~I~~~~Vsf~Y~~~~~~---------------------~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G 1075 (1265)
.|+++||+.-+..++.. .-++|+||+|+.||+..|.|-||||||||++++-|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 47888888877643221 247899999999999999999999999999999999999999
Q ss_pred EEEECCcccCCCCHHHHh----cccEEEecCCCCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhCCC
Q 000830 1076 KVMVDGIDIKRLNLKSLR----KHIALVQQEPALFA-TSIYENILYGKD--GAS----EGEVIEAAKLANAHSFISALPE 1144 (1265)
Q Consensus 1076 ~I~idG~di~~~~l~~lR----~~i~~VpQdp~LF~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~ 1144 (1265)
+|++||.|+..++.++|| +++++|+|..-||+ .||.||..||.. ..+ ++...++++.+|+.+|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999987764 57999999999985 599999999853 223 3456788999999999888774
Q ss_pred CccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-c
Q 000830 1145 GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-A 1221 (1265)
Q Consensus 1145 Gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~ 1221 (1265)
+||||+|||+.|||||..+|+||++|||.|||||--...+|+.|.++.+ .||+++|||+|++... .
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 6999999999999999999999999999999999999999999988754 6899999999999755 9
Q ss_pred CEEEEEeCCEEEEecChhhhhhcCCcHHHHH
Q 000830 1222 DQISVIESGKIIEQGTHSSLVENEDGAYFKL 1252 (1265)
Q Consensus 1222 DrI~vl~~G~Ive~Gt~~eLl~~~~g~f~~l 1252 (1265)
|||.+|++|+|++.|||+|.+.++...|-+-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 9999999999999999999998777666443
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=370.63 Aligned_cols=219 Identities=29% Similarity=0.541 Sum_probs=184.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCcceEEECCeeCCCC--C
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-----PLSGEILLDGNNIKGL--D 452 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~ 452 (1265)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 359999999999999999999999999999999999986 6899999999998643 3
Q ss_pred hHHHhhheeEEccCCccccccHHHHhccCCCCC--------------C-----HHHHHHHHHHhcHHHHHhcCccccccc
Q 000830 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDA--------------T-----MEEITRAAKLSEAMSFISNLPERFETQ 513 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~~~--------------~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~ 513 (1265)
...+|++++||+|++.+|+.||+||+.++.... . .+++.++++.. .+++++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQA-------ALWDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHc-------CCchhhhHH
Confidence 556788999999999999999999999763210 0 01111111111 334445566
Q ss_pred ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEE-EEE
Q 000830 514 VGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVI-AVV 591 (1265)
Q Consensus 514 ~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i-~~l 591 (1265)
....+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 77888999999999999999999999999999999999999999999999998777999999999999865 9997 577
Q ss_pred eCCEEEEeeCcchhccC
Q 000830 592 QGRKIVKTGSHEELISN 608 (1265)
Q Consensus 592 ~~G~i~~~g~~~~l~~~ 608 (1265)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999888654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=363.07 Aligned_cols=219 Identities=31% Similarity=0.509 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC--C---CcceEEECCeeCCC--CCh
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE--P---LSGEILLDGNNIKG--LDL 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~ 453 (1265)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999973 358999999999999999999999999999999999975 5 59999999998864 334
Q ss_pred HHHhhheeEEccCCccccccHHHHhccCCC--CC-CHH----HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 454 KWLRQQIGLVNQEPALFATTIRENILYGKD--DA-TME----EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~~~~--~~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
..+++.++|++|++.+|+.|++||+.++.. .. ..+ ++.++++..+ +.+++.......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA-------IWDEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC-------CccchhhHHhcCcccCCHHHH
Confidence 567788999999999999999999987521 11 111 1222222222 112223345566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchh
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEEL 605 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 605 (1265)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999998888
Q ss_pred ccCC
Q 000830 606 ISNP 609 (1265)
Q Consensus 606 ~~~~ 609 (1265)
...+
T Consensus 235 ~~~~ 238 (252)
T PRK14255 235 FLNP 238 (252)
T ss_pred hcCC
Confidence 7653
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=364.25 Aligned_cols=227 Identities=24% Similarity=0.442 Sum_probs=182.7
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChH
Q 000830 381 HIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~ 454 (1265)
.|+++||+++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhhheeEEccCCc--cccc-cHHHHhccCCC---CCCH----HHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChH
Q 000830 455 WLRQQIGLVNQEPA--LFAT-TIRENILYGKD---DATM----EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGG 524 (1265)
Q Consensus 455 ~~r~~i~~v~Q~~~--lf~~-ti~~ni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 524 (1265)
..++.++||+|++. +++. |+.+|+.++.. .... +++.++++..++. ++ .......+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~----~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL------PD----HASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC------hH----HHhcCchhcCHH
Confidence 66678999999985 4544 89999875321 1111 1222233332221 11 123345689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeC
Q 000830 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 525 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 601 (1265)
||||++|||||+.+|+||||||||++||+.+...+.+.|.++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999999875 38999999999999986 99999999999999999
Q ss_pred cchhccCC-chHHHHHH
Q 000830 602 HEELISNP-NSAYAALV 617 (1265)
Q Consensus 602 ~~~l~~~~-~~~~~~~~ 617 (1265)
++++...+ ...+..++
T Consensus 234 ~~~~~~~~~~~~~~~~~ 250 (267)
T PRK15112 234 TADVLASPLHELTKRLI 250 (267)
T ss_pred HHHHhcCCCCHHHHHHH
Confidence 99987653 23444454
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=356.63 Aligned_cols=209 Identities=33% Similarity=0.487 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhhee
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
++++||+++|++ . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 2 2489999999999999999999999999999999999999999999998765442 56799
Q ss_pred EEccCCccccc-cHHHHhccCC-CCC--C---HHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHH
Q 000830 462 LVNQEPALFAT-TIRENILYGK-DDA--T---MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 462 ~v~Q~~~lf~~-ti~~ni~~~~-~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARa 534 (1265)
|++|++.+|.+ |+.||+.++. +.. . .+++.++++..++ +..+......||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGI-----------EDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCc-----------HHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999986 9999998753 111 1 1233334444433 333444556899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhccC
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 535 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
++++|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988743 7899999999999876 999999999999999999888754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=358.38 Aligned_cols=214 Identities=26% Similarity=0.416 Sum_probs=171.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC---CCcceEEECCeeCCCCChHHHh
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE---PLSGEILLDGNNIKGLDLKWLR 457 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~r 457 (1265)
+.|+||+|+|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 3579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hheeEEccCCccccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHH-HHhcCcccccccccCCCCCCChHHHHHHHHHHHh
Q 000830 458 QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMS-FISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 458 ~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal 535 (1265)
++++|++|++.+|++ |++||+.++..........++.+...+.+ .+..+ ++.........+||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 99999987532110000000111011111 12221 233334456678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCc-hhh-hccCEEEEEeCCEEEEee
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL-STI-RNADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 536 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~~-~~~d~i~~l~~G~i~~~g 600 (1265)
+++|++|||||||++||+.+...+.+.|.++. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998875 478999999998 455 459999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=378.30 Aligned_cols=212 Identities=29% Similarity=0.440 Sum_probs=179.4
Q ss_pred eEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCC----HHHHhcccE
Q 000830 1022 GVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN----LKSLRKHIA 1097 (1265)
Q Consensus 1022 ~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~lR~~i~ 1097 (1265)
|++++|++ .. + |+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999963 23 4 999999999999999999999999999999999999999999999986542 345688999
Q ss_pred EEecCCCCCcc-cHHHHhccCCCCCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000830 1098 LVQQEPALFAT-SIYENILYGKDGASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172 (1265)
Q Consensus 1098 ~VpQdp~LF~g-TIreNl~~g~~~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARALl 1172 (1265)
||||++.+|.. |++||+.++...... +.+.+.++..++. ........+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-----------HLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 999999876432221 2244445444443 3344445689999999999999999
Q ss_pred cCCCEEEEecCcCCCCHHHHHHHHHHHHHHcC--CceEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhhcCCcHH
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAY 1249 (1265)
Q Consensus 1173 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~Ive~Gt~~eLl~~~~g~f 1249 (1265)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 99999999999999999999999999998764 6899999999999876 99999999999999999999987655444
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=362.46 Aligned_cols=202 Identities=27% Similarity=0.442 Sum_probs=171.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCcEEEECCcccCCCCHHHHhcccE
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 3589999999999999999999999999999999999999999999999998642 34689
Q ss_pred EEecCCCCCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000830 1098 LVQQEPALFA-TSIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQdp~LF~-gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1170 (1265)
|+||++.+|. .|++||+.++.. ..+. +++.++++..++.+. ......+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA-----------EKRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHH
Confidence 9999999887 699999976421 1222 234445555544433 333456799999999999999
Q ss_pred hccCCCEEEEecCcCCCCHHHHHHHHHHHHHHc--CCceEEEEecCchhhhc-cCEEEEEe--CCEEEEecCh
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIE--SGKIIEQGTH 1238 (1265)
Q Consensus 1171 Llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~--~G~Ive~Gt~ 1238 (1265)
|+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999874 37899999999999876 99999998 5999998764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=361.24 Aligned_cols=226 Identities=28% Similarity=0.471 Sum_probs=185.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECC------eeCCCCCh
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG------NNIKGLDL 453 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g------~~~~~~~~ 453 (1265)
..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++...+.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 45999999999964 4589999999999999999999999999999999999999997766665 56666667
Q ss_pred HHHhhheeEEccCCccccc-cHHHHhccCCCC--C-CHHHH----HHHHHHhcHHHHHhcCcccccccccCCCCCCChHH
Q 000830 454 KWLRQQIGLVNQEPALFAT-TIRENILYGKDD--A-TMEEI----TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQ 525 (1265)
Q Consensus 454 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~--~-~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 525 (1265)
..+|++++|++|++.+|.+ |++||+.++... . ..++. .++++..++.+ .......+.+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK-------EVYDRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------cchhhhcCCcccCCHHH
Confidence 7788999999999999976 999999876321 1 12222 22222222211 11123456778899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCEEEEEeCCEEEEeeCcch
Q 000830 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEE 604 (1265)
Q Consensus 526 kqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~ 604 (1265)
|||++||||++.+|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999998877899999999999995 499999999999999999999
Q ss_pred hccCCchHHHH
Q 000830 605 LISNPNSAYAA 615 (1265)
Q Consensus 605 l~~~~~~~~~~ 615 (1265)
+.+.+...|.+
T Consensus 239 ~~~~~~~~~~~ 249 (257)
T PRK14246 239 IFTSPKNELTE 249 (257)
T ss_pred HHhCCCcHHHH
Confidence 88764444443
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=363.18 Aligned_cols=220 Identities=26% Similarity=0.380 Sum_probs=178.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCC---cceEEECCeeCCCC-----C
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL---SGEILLDGNNIKGL-----D 452 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~-----~ 452 (1265)
-|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 45899999999999999999999999999999999999986 49999999988653 2
Q ss_pred hHHHhhheeEEccCCccccc-cHHHHhccCCCCCCH--H---HHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHH
Q 000830 453 LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATM--E---EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQK 526 (1265)
Q Consensus 453 ~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~~~~~~~~--~---~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 526 (1265)
...++++++|++|++.+|+. |++||+.++...... . ..........+.+.+..+ |++......+.+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 35667889999999998885 999999876421100 0 000000011122233322 233334556778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcc
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 603 (1265)
||++|||||+.+|++|||||||++||+++...+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 37999999999998755 9999999999999999998
Q ss_pred hh
Q 000830 604 EL 605 (1265)
Q Consensus 604 ~l 605 (1265)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=373.80 Aligned_cols=203 Identities=23% Similarity=0.418 Sum_probs=169.9
Q ss_pred CccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCChHHHhhheeEEccCCccccc-cHH
Q 000830 397 VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIR 475 (1265)
Q Consensus 397 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 475 (1265)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++|||||++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 458999999999999999999999999999999999999999999999999875 345678899999999999976 999
Q ss_pred HHhccCCC--CCCHHHHHHHHHHhcHHHHHhcCcccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 000830 476 ENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553 (1265)
Q Consensus 476 ~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqriaiARal~~~~~illlDE~ts~lD~ 553 (1265)
||+.+... ..+..+..+ .+.+.+..+ |++........+||||||||++|||||+.+|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99987421 112222111 111223222 233334455678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeCcchhcc
Q 000830 554 ESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 554 ~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999875 48999999999999976 99999999999999999988764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=361.63 Aligned_cols=215 Identities=25% Similarity=0.332 Sum_probs=173.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCcceEEECCeeCCCCChHHH-hh
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY--EPLSGEILLDGNNIKGLDLKWL-RQ 458 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~g~~~~~~~~~~~-r~ 458 (1265)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 35899999999999999999999999999999999994 7999999999999988776554 45
Q ss_pred heeEEccCCccccc-cHHHHhccCCCC---------CCHHHHHHHHHHhcHHHHHhcCcccccc-cccCCCC-CCChHHH
Q 000830 459 QIGLVNQEPALFAT-TIRENILYGKDD---------ATMEEITRAAKLSEAMSFISNLPERFET-QVGERGI-QLSGGQK 526 (1265)
Q Consensus 459 ~i~~v~Q~~~lf~~-ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~-~LSgGqk 526 (1265)
.++||+|++.+|++ |++||+.+.... .+.++..+ .+.+.+..+ |++. ....... +||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 59999999999986 999999764211 01111111 111222222 2221 1223333 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc--cCEEEEEeCCEEEEeeCcc
Q 000830 527 QRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN--ADVIAVVQGRKIVKTGSHE 603 (1265)
Q Consensus 527 qriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~--~d~i~~l~~G~i~~~g~~~ 603 (1265)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999999875 47999999999999975 7999999999999999887
Q ss_pred hhc
Q 000830 604 ELI 606 (1265)
Q Consensus 604 ~l~ 606 (1265)
++.
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=363.03 Aligned_cols=227 Identities=26% Similarity=0.418 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccCCCcceEEECCeeCCCCCh-
Q 000830 381 HIEFKDVSFCYPSR------PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL- 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~- 453 (1265)
.|+++||+|+|+.. .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999731 13469999999999999999999999999999999999999999999999999887765
Q ss_pred --HHHhhheeEEccCCc--ccc-ccHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHhcCcccccc-cccCCCCCCChH
Q 000830 454 --KWLRQQIGLVNQEPA--LFA-TTIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFET-QVGERGIQLSGG 524 (1265)
Q Consensus 454 --~~~r~~i~~v~Q~~~--lf~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgG 524 (1265)
..+++.++|++|++. ++. .|+.||+.+... ..... .....+.+.+..+ |+++ .....+..||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 346788999999983 443 599999865321 11111 1111223334433 4543 456778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEeeC
Q 000830 525 QKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 525 qkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 601 (1265)
||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999988753 7999999999999975 99999999999999999
Q ss_pred cchhccCCchHHH
Q 000830 602 HEELISNPNSAYA 614 (1265)
Q Consensus 602 ~~~l~~~~~~~~~ 614 (1265)
++++....+..+.
T Consensus 236 ~~~~~~~~~~~~~ 248 (268)
T PRK10419 236 VGDKLTFSSPAGR 248 (268)
T ss_pred hhhccCCCCHHHH
Confidence 9998765333333
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=352.31 Aligned_cols=231 Identities=32% Similarity=0.555 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEEcCCCCcHHHHHHHHHhccC-C----CcceEEECCeeCCCCChHH
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYE-P----LSGEILLDGNNIKGLDLKW 455 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-~----~~G~i~~~g~~~~~~~~~~ 455 (1265)
++++|++.+|+... ...+++||||++++||++||||+|||||||+.+.|+|+++ | .+|+|.++|+|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999987432 3568999999999999999999999999999999999998 4 5799999999999998875
Q ss_pred Hh----hheeEEccCCc--cccc-cHHHHhc----cCCCCCCHHH-HHHHHHHhcHHHHHhcCcccccccccCCCCCCCh
Q 000830 456 LR----QQIGLVNQEPA--LFAT-TIRENIL----YGKDDATMEE-ITRAAKLSEAMSFISNLPERFETQVGERGIQLSG 523 (1265)
Q Consensus 456 ~r----~~i~~v~Q~~~--lf~~-ti~~ni~----~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 523 (1265)
+| +.|+||+|||. |-+- ||.+-+. ......+.+| ..+|. ++.+.+ .+|+ -+......+.+|||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~---~~L~~V-gi~~-~~~~~~~YPhelSG 156 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAI---ELLELV-GIPD-PERRLKSYPHELSG 156 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHH---HHHHHc-CCCC-HHHHHhhCCcccCC
Confidence 43 36999999984 3222 5544443 2111101111 11111 111222 3443 23356778889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEee
Q 000830 524 GQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 524 GqkqriaiARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 600 (1265)
|||||+.||-||+.+|++||.||||+|||..++++|.+.|+++.+ |.|+|+|||++..+.. ||||+||..|+|||.|
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 999999999999999999999999999999999999999998864 8999999999999876 9999999999999999
Q ss_pred CcchhccCCchHHHHHH
Q 000830 601 SHEELISNPNSAYAALV 617 (1265)
Q Consensus 601 ~~~~l~~~~~~~~~~~~ 617 (1265)
+.+++..++...|.+..
T Consensus 237 ~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 237 PVEEIFKNPKHPYTRGL 253 (316)
T ss_pred CHHHHhcCCCChHHHHH
Confidence 99999999888886543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1265 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-104 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-95 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-93 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-94 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-92 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-73 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-69 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-68 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-68 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-64 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-62 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-61 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-59 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-60 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-60 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-60 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-59 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-59 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-58 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-58 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-56 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-54 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-55 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-51 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-51 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-49 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-48 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-48 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-47 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-46 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-45 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-26 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-25 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 9e-22 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-24 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-21 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-24 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-23 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-20 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-22 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-22 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-21 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-21 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-21 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-21 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-21 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-18 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-21 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-21 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-21 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-21 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-21 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-20 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-20 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-20 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-20 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-20 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 4e-20 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 9e-20 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 9e-20 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-19 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-19 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-19 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-19 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-19 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-19 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-19 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-19 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 4e-19 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 5e-19 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-18 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-18 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-16 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-18 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-15 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 9e-18 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-15 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-16 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-16 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-16 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-16 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-16 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-16 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-15 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-15 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 5e-15 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-14 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 7e-14 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 8e-13 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 7e-14 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 9e-13 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-12 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-11 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-11 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-11 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-11 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-11 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-10 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-10 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-10 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-09 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-09 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 7e-09 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 1e-07 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-08 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 4e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 3e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 3e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 3e-04 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 3e-04 | ||
| 3zqj_A | 993 | Mycobacterium Tuberculosis Uvra Length = 993 | 4e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra Length = 993 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1595 bits (4132), Expect = 0.0
Identities = 467/1280 (36%), Positives = 748/1280 (58%), Gaps = 30/1280 (2%)
Query: 12 NDYNNSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVS 71
+ + N + + +K+++K +VS+ +F +A + D + M +G++ A +HGV+
Sbjct: 4 EEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVA 63
Query: 72 VPVFFIFFGKLINIIGLAYLFPKTAS---------------HKVAKYSLDFVYLSVAILF 116
+P+ + FG + + K ++ ++ Y+ + + +L
Sbjct: 64 LPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLI 123
Query: 117 SSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDAL 176
++I+VS W RQ K+R + +++NQ+I FD GE+ + +T D+ + + +
Sbjct: 124 VAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGI 182
Query: 177 SEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKS 236
+K+G F ++ F GGFIIGF R W+++LV L+I P++ L+ G++A + + +
Sbjct: 183 GDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHA 242
Query: 237 YVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVL 296
Y KAG +AEEV+ +RTV AF G+ K ++ Y L + G K + + +G+ ++
Sbjct: 243 YAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLI 302
Query: 297 FLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIF 356
+ S++L WY + +V + G+ T +V+I S+GQA+P+I AF A+ AAY +F
Sbjct: 303 YASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVF 362
Query: 357 EMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALV 416
++I+ + SK+G K D + G++EFK++ F YPSR +V I L + +G+ VALV
Sbjct: 363 KIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALV 422
Query: 417 GGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRE 476
G SG GKST + L++R Y+PL G + +DG +I+ +++++LR+ IG+V+QEP LFATTI E
Sbjct: 423 GNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAE 482
Query: 477 NILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536
NI YG++D TM+EI +A K + A FI LP +F+T VGERG QLSGGQKQRIAI+RA+V
Sbjct: 483 NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542
Query: 537 KNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKI 596
+NP ILLLDEATSALD ESE VQ ALD+ GRTT+V+AHRLST+RNADVIA G I
Sbjct: 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVI 602
Query: 597 VKTGSHEELISNPNSAYAALVQLQEAASQQ-----SNSSQCPNMGRPLSIKFSRELSGTR 651
V+ G+H+EL+ Y LV Q A ++ + S+ +S K S R
Sbjct: 603 VEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRR 661
Query: 652 TSFGASFRSEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAIIAGAQ 711
S S + +A + S ++ + +W Y V G CAII G
Sbjct: 662 RSTRKSICGPHDQDRKLSTKEALDEDVPP-ASFWRILKLNSTEWPYFVVGIFCAIINGGL 720
Query: 712 MPLFALGVSQALVAYYM--DWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERL 769
P F++ S+ + + +T ++ ++LF +I+ I ++ +FG GE L
Sbjct: 721 QPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEIL 780
Query: 770 TLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVT 829
T R+R +F ++L ++ WFD+ N++ L +RL +DA ++ R ++ QN +
Sbjct: 781 TKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLG 840
Query: 830 ASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNI 889
+I+ I W++TL+++A P+I + E G K + +A EA+ N
Sbjct: 841 TGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENF 900
Query: 890 RTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWYGSVLM 949
RTV + E K +Y++ L P + + + + GI + +Q ++ SY A +G+ L+
Sbjct: 901 RTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLV 960
Query: 950 GKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQV--IGDI 1007
++L +F++V+ F ++ A+A+G+ + PD K A+ + ++++ ++
Sbjct: 961 TQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQ 1020
Query: 1008 GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL 1067
G + +EG ++ GV F+YP+RP + + + +L+V+ G+++ALVG SG GKSTV+ L+
Sbjct: 1021 GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080
Query: 1068 RFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDG--ASEGE 1125
RFYDP AG V +DG +IK+LN++ LR + +V QEP LF SI ENI YG + S E
Sbjct: 1081 RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE 1140
Query: 1126 VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATS 1185
++ AAK AN H FI +LP+ Y+T+VG++G QLSGGQKQR+AIARA+++ P ILLLDEATS
Sbjct: 1141 IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATS 1200
Query: 1186 ALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENE 1245
ALD ESE+VVQ+AL + RT I++AHRLSTI+NAD I VI++GK+ E GTH L+
Sbjct: 1201 ALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ- 1259
Query: 1246 DGAYFKLINLQQRQDPQHSQ 1265
G YF ++++Q +
Sbjct: 1260 KGIYFSMVSVQAGAKRSYVH 1279
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 678 bits (1752), Expect = 0.0
Identities = 206/618 (33%), Positives = 338/618 (54%), Gaps = 6/618 (0%)
Query: 16 NSSNNNNNNNTEDQESSKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVF 75
S ++ + + + S +++ ++ +G A ++G P F
Sbjct: 666 KSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNST-EWPYFVVGIFCAIINGGLQPAF 724
Query: 76 FIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAK 135
+ F K++ + P+T +SL F+ L + + +++ + GE +
Sbjct: 725 SVIFSKVVGVFTNG-GPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKR 783
Query: 136 MRMAYLRSMLNQDISLFDTEA-STGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGF 194
+R +SML QD+S FD +TG + + + +D V+ A ++ I+ G
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGI 843
Query: 195 IIGFARVWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTV 254
II WQ++L+ L+IVP+IA+AG + + G + +K +G+IA E I N RTV
Sbjct: 844 IISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTV 903
Query: 255 QAFAGEDKAVKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKH 314
+ E K +Y ++L Y+ K G+ +++ S++ + + +V +
Sbjct: 904 VSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQ 963
Query: 315 ISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRK 374
+ +V +++GQ + + +A +A I +IE+ + S G K
Sbjct: 964 LMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLK 1023
Query: 375 LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434
+ L G+++F V F YP+RP + + L++ G+ +ALVG SG GKSTV+ L+ERFY
Sbjct: 1024 PNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 435 EPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD--ATMEEITR 492
+P++G + LDG IK L+++WLR Q+G+V+QEP LF +I ENI YG + + EEI R
Sbjct: 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVR 1143
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
AAK + FI +LP+++ T+VG++G QLSGGQKQRIAI+RA+V+ P ILLLDEATSALD
Sbjct: 1144 AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
ESE VQEALD+ GRT +V+AHRLSTI+NAD+I V+Q K+ + G+H++L++
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGI 1262
Query: 613 YAALVQLQEAASQQSNSS 630
Y ++V +Q A +
Sbjct: 1263 YFSMVSVQAGAKRSYVHH 1280
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 504 bits (1300), Expect = e-165
Identities = 159/575 (27%), Positives = 288/575 (50%), Gaps = 14/575 (2%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFC 745
+L+ + P + I I+ A + L + D + + + ++
Sbjct: 15 RLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV--LLWMPLVVI 72
Query: 746 CAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLES 805
++ I I + ++ + +R ++F ++ + +FD+ S+ L SR+
Sbjct: 73 GLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITY 130
Query: 806 DATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI--ISGHISEKLF 863
D+ + + +++ + F++ F +W++++++V P++ +S++
Sbjct: 131 DSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKR-- 188
Query: 864 FQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923
F+ N+ + A + + + V F ++ + + + + + +
Sbjct: 189 FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248
Query: 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALA-MGETLALVPD 982
I I Q + L+ S + + ++ ++ + + +
Sbjct: 249 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTIT-VVFSSMIALMRPLKSLTNVNAQ 307
Query: 983 LLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLK 1042
+G ++F +LD + + + + G +E R V F+YP R + ++ NLK
Sbjct: 308 FQRGMAACQTLFAILDSEQE-KDEGKRVIDRATGDLEFRNVTFTYPGREVPAL-RNINLK 365
Query: 1043 VRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQE 1102
+ AGK++ALVG+SGSGKST+ SLI RFYD G +++DG D++ L SLR +ALV Q
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 1103 PALFATSIYENILYGK-DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161
LF ++ NI Y + + S ++ EAA++A A FI+ + G T +GE GV LSGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNA 1221
+QR+AIARA+L++ IL+LDEATSALD ESER +Q AL L + RT++++AHRLSTI+ A
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQA 545
Query: 1222 DQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
D+I V+E G I+E+GTHS L+ G Y +L +Q
Sbjct: 546 DEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 475 bits (1225), Expect = e-154
Identities = 179/600 (29%), Positives = 299/600 (49%), Gaps = 34/600 (5%)
Query: 33 KKQQQKRSVSLFK-LFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYL 91
+ + F+ L+ + + + I ++ S L++
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPF-KAGLIVAGIALILNAASDTFMLSLLKPLLDDG----- 55
Query: 92 FPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISL 151
F KT + L + L + +S+I C + + MR M+ ++
Sbjct: 56 FGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAF 115
Query: 152 FDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSI 211
FD + STG ++S IT D V + S + + + +G FI+ F WQ+S++ + +
Sbjct: 116 FDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVL 174
Query: 212 VPLIALAGGMYAYVTIGLIARVRKSYVKA----GEI---AEEVIGNVRTVQAFAGEDKAV 264
P+++ + R R G++ AE+++ + V F G++
Sbjct: 175 APIVS-------IAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVET 227
Query: 265 KVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV-VVHKHISNGG-ESF 322
K + + + G K A + + + L+ + +++ S V ++ G
Sbjct: 228 KRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVV 287
Query: 323 TTMLNVVIAGL-SLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGH 381
+ + ++ L SL R AA +F ++ D+ + R +D+ +G
Sbjct: 288 FSSMIALMRPLKSLTNVNAQFQ---RGMAACQTLFAIL--DSEQEKDEGK-RVIDRATGD 341
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+EF++V+F YP R A+ L IPAGK VALVG SGSGKST+ SLI RFY+ G I
Sbjct: 342 LEFRNVTFTYPGREVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDA-TMEEITRAAKLSEAM 500
L+DG++++ L LR Q+ LV+Q LF T+ NI Y + + + E+I AA+++ AM
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM 460
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
FI+ + +T +GE G+ LSGGQ+QRIAI+RA++++ IL+LDEATSALD ESE ++Q
Sbjct: 461 DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
ALD + RT++V+AHRLSTI AD I VV+ IV+ G+H EL++ + YA L ++Q
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 494 bits (1274), Expect = e-161
Identities = 150/575 (26%), Positives = 286/575 (49%), Gaps = 14/575 (2%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFC 745
+L++ +R V TI +I A + L + + ++ ++ + +
Sbjct: 15 RLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF--LRILPFMIL 72
Query: 746 CAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLES 805
+ + + + +++R ++F+ + + +FD+ S+ L SR+
Sbjct: 73 GLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITY 130
Query: 806 DATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLI--ISGHISEKLF 863
D+ + +++ + + F +W+++LV++ P++ +S++
Sbjct: 131 DSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKR-- 188
Query: 864 FQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIA 923
F+ N+ A A + + + V ++ ++ + + + +++
Sbjct: 189 FRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQ 248
Query: 924 GIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLA-LVPD 982
I + Q + L+ SV + + + + + + L + +
Sbjct: 249 SIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFT-VVFSAMFGLMRPLKALTSVTSE 307
Query: 983 LLKGNQMAASVFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLK 1042
+G ++F ++D +T+ E V G ++++ V F+Y + + + +
Sbjct: 308 FQRGMAACQTLFGLMDLETERDNG-KYEAERVNGEVDVKDVTFTYQGKEKPAL-SHVSFS 365
Query: 1043 VRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQE 1102
+ GK++ALVG+SGSGKST+ +L RFYD +G + +DG D++ L +LR+H ALV Q
Sbjct: 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425
Query: 1103 PALFATSIYENILYGKDG-ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161
LF +I NI Y +G + ++ +AA+ A+A FI +P+G T +GE G LSGGQ
Sbjct: 426 VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485
Query: 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNA 1221
+QRVAIARA+L++ +L+LDEATSALD ESER +Q AL L + +T +++AHRLSTI+ A
Sbjct: 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA 545
Query: 1222 DQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
D+I V++ G+IIE+G H+ L+ DGAY +L +Q
Sbjct: 546 DEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 465 bits (1198), Expect = e-150
Identities = 170/601 (28%), Positives = 296/601 (49%), Gaps = 35/601 (5%)
Query: 32 SKKQQQKRSVSLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYL 91
S + + +L+ + Y + + +I ++ + L++
Sbjct: 2 SLHSDESNWQTFKRLWTYIRLY-KAGLVVSTIALVINAAADTYMISLLKPLLDEG----- 55
Query: 92 FPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISL 151
F S+ + + L S + C + +MR ++ +
Sbjct: 56 FGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRF 115
Query: 152 FDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSI 211
FD E STG ++S IT D V A S + + + + +G + F WQ+SLV + +
Sbjct: 116 FDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVV 174
Query: 212 VPLIALAGGMYAYVTIGLIA-RVRKSYVKA----GEI---AEEVIGNVRTVQAFAGEDKA 263
P++A A I ++ R RK G + AE+++ + V ++ G++
Sbjct: 175 APVVAFA--------ISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVE 226
Query: 264 VKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV-VVHKHISNGG-ES 321
K + + ++ + K A+ + + + L+ +++ SV + ++ G
Sbjct: 227 RKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTV 286
Query: 322 FTTMLNVVIAGL-SLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSG 380
+ + ++ L +L + R AA +F +++ +T + ++++G
Sbjct: 287 VFSAMFGLMRPLKALTSVTSEFQ---RGMAACQTLFGLMDLETERDNGKY---EAERVNG 340
Query: 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
++ KDV+F Y + A+ IP GK VALVG SGSGKST+ +L RFY+ SG
Sbjct: 341 EVDVKDVTFTYQGKEKPALSH-VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEA 499
I LDG++++ L LR+ LV+Q LF TI NI Y + + T E+I +AA+ + A
Sbjct: 400 ICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHA 459
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
M FI N+P+ +T +GE G LSGGQ+QR+AI+RA++++ +L+LDEATSALD ESE ++
Sbjct: 460 MEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI 519
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQL 619
Q ALD + +T +V+AHRLSTI AD I VV +I++ G H +L++ + AYA L ++
Sbjct: 520 QAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRI 578
Query: 620 Q 620
Q
Sbjct: 579 Q 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 491 bits (1267), Expect = e-161
Identities = 178/583 (30%), Positives = 289/583 (49%), Gaps = 22/583 (3%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVK-----KI 740
+ V+P I II L L + A+ + T E I
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 741 TILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILA 800
I ++ + I ++ +R+K+++ + + ++ +N +
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVI 121
Query: 801 SRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLII--SGHI 858
SR+ +D + ++ + + + + I F L+ ++TL + +P I
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 859 SEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918
+L + S+A + E V I V +F ED + + + +
Sbjct: 182 FGRL--RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNF-DKKNTNFLTRAL 238
Query: 919 RGQ-IAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALA-MGET 976
+ + + + G+ L + + +F+ + +
Sbjct: 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITV-GTLAAFVGYLELLFGPLRRL 297
Query: 977 LALVPDLLKGNQMAAS--VFEVLDRKTQVIGDIG-EELTNVEGTIELRGVHFSYPSRPEV 1033
+A L + A+ VF+++D + +G + + +G I++ V F Y
Sbjct: 298 VASFTTLTQS--FASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAP 355
Query: 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR 1093
++ KD NL + G+++A VG SG GKST+++LI RFYD T+G++++DG +IK SLR
Sbjct: 356 IL-KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414
Query: 1094 KHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153
I LVQQ+ LF+ ++ ENIL G+ A++ EV+EAAK+ANAH FI LP+GY T+VGER
Sbjct: 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER 474
Query: 1154 GVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAH 1213
GV+LSGGQKQR++IAR L NP IL+LDEATSALD+ESE ++Q+AL L + RTT+IVAH
Sbjct: 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534
Query: 1214 RLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
RLSTI +AD+I VIE+G I+E GTH L+ GAY L ++Q
Sbjct: 535 RLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 458 bits (1180), Expect = e-148
Identities = 176/589 (29%), Positives = 275/589 (46%), Gaps = 29/589 (4%)
Query: 45 KLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLIN--IIGLAYLFPKTASHKVAK 102
+ F Y + I + + + I+ I A + H
Sbjct: 4 RYLQFVKPY-KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 103 YSLDFVYLSVAILFSSWIEVSCWM-YTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEV 161
+ + +I +T + +R + + G+V
Sbjct: 63 IGIALFIFVIVRPPIEFI-RQYLAQWTSNKILYDIRKKLYNHLQALSARFYA-NNQVGQV 120
Query: 162 ISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGM 221
IS + +D+ +D + + N + I F +++L L I P
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYI----- 175
Query: 222 YAYVTIGLIARVRKSY----VKAGEI---AEEVIGNVRTVQAFAGEDKAVKVYKEALSNT 274
R+RK E+ E + + V++FA ED K + + +N
Sbjct: 176 --LTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233
Query: 275 YKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWY-VSVVVHKHISNGG-ESFTTMLNVVIAG 332
K +++ V + +++ + + I+ G +F L ++
Sbjct: 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFG- 292
Query: 333 LSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTG-RKLDKLSGHIEFKDVSFCY 391
L + T ++ A+ +F++I D + G + ++ G I+ VSF Y
Sbjct: 293 -PLRRLVASFTTLTQSFASMDRVFQLI--DEDYDIKNGVGAQPIEIKQGRIDIDHVSFQY 349
Query: 392 PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGL 451
+ I L I G+ VA VG SG GKST+I+LI RFY+ SG+IL+DG+NIK
Sbjct: 350 NDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF 408
Query: 452 DLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFE 511
LR QIGLV Q+ LF+ T++ENIL G+ AT EE+ AAK++ A FI NLP+ ++
Sbjct: 409 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468
Query: 512 TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRT 571
T+VGERG++LSGGQKQR++I+R + NP IL+LDEATSALD ESE+ +QEALD + RT
Sbjct: 469 TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRT 528
Query: 572 TVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
T++VAHRLSTI +AD I V++ IV+TG+H ELI+ AY L +Q
Sbjct: 529 TLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 470 bits (1211), Expect = e-157
Identities = 100/261 (38%), Positives = 146/261 (55%), Gaps = 4/261 (1%)
Query: 1008 GEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL 1067
N++G ++ + V F+YP+ P V + + + GK ALVG +GSGKSTV +L+
Sbjct: 7 SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66
Query: 1068 RFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDG-ASEGEV 1126
Y PT GKV++DG + + + L +A V QEP LF S ENI YG + E+
Sbjct: 67 NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEI 126
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
A + AH FIS P+GY T+VGE G QLSGGQ+Q VA+ARA+++ P +L+LD ATSA
Sbjct: 127 TAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186
Query: 1187 LDVESERVVQQALQRLMRK--RTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVEN 1244
LD ++ VQ+ L RT +++ +LS + A I ++ G + EQGTH L+E
Sbjct: 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
Query: 1245 EDGAYFKLINLQQRQDPQHSQ 1265
G Y ++ +
Sbjct: 247 -GGCYRSMVEALAAPSDAAAH 266
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 469 bits (1210), Expect = e-157
Identities = 101/267 (37%), Positives = 151/267 (56%), Gaps = 4/267 (1%)
Query: 368 SSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVI 427
+ G ++F+DVSF YP+ P+V + + GK+ ALVG +GSGKSTV
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 428 SLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK-DDAT 486
+L++ Y+P G++LLDG + D +L Q+ V QEP LF + RENI YG T
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT 122
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
MEEIT A S A FIS P+ ++T+VGE G QLSGGQ+Q +A++RA+++ P +L+LD
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN 182
Query: 547 ATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604
ATSALDA ++ VQ L RT +++ +LS A I ++ + + G+H +
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQ 242
Query: 605 LISNPNSAYAALVQLQEAASQQSNSSQ 631
L+ Y ++V+ A S +
Sbjct: 243 LMER-GGCYRSMVEALAAPSDAAAHHH 268
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 452 bits (1165), Expect = e-150
Identities = 117/245 (47%), Positives = 160/245 (65%), Gaps = 1/245 (0%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
+ I R + F Y V+ + NL ++ G+ + +VG+SGSGKST+ LI RFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDSPVI-LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 1073 TAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKL 1132
G+V++DG D+ + LR+ + +V Q+ L SI +NI G S +VI AAKL
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 1133 ANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE 1192
A AH FIS L EGY+T VGE+G LSGGQ+QR+AIARA++ NP+IL+ DEATSALD ESE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 1193 RVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKL 1252
V+ + + ++ + RT II+AHRLST+KNAD+I V+E GKI+EQG H L+ + Y L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 1253 INLQQ 1257
LQ
Sbjct: 242 YQLQS 246
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 435 bits (1121), Expect = e-144
Identities = 114/243 (46%), Positives = 163/243 (67%), Gaps = 1/243 (0%)
Query: 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
I F+++ F Y V I D L I G+++ +VG SGSGKST+ LI+RFY P
Sbjct: 4 HHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62
Query: 438 SGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLS 497
+G++L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 122
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
A FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSALD ESE+
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 558 SVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617
+ + ++ GRT +++AHRLST++NAD I V++ KIV+ G H+EL+S P S Y+ L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Query: 618 QLQ 620
QLQ
Sbjct: 243 QLQ 245
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 430 bits (1108), Expect = e-142
Identities = 107/243 (44%), Positives = 161/243 (66%), Gaps = 4/243 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ R V F+Y ++ +D + + + +A G SG GKST+ SL+ RFY PTAG++
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDG-ASEGEVIEAAKLANAH 1136
+DG I ++L++ R I V Q+ A+ A +I EN+ YG +G ++ ++ + LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQ 1196
SF+ +P+ +T+VGERGV++SGGQ+QR+AIARA L+NP+IL+LDEAT++LD ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1197 QALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
+AL LM+ RTT+++AHRLSTI +AD+I IE G+I G H+ LV Y K ++ Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
Query: 1257 QRQ 1259
Sbjct: 239 LTV 241
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 412 bits (1062), Expect = e-135
Identities = 111/245 (45%), Positives = 162/245 (66%), Gaps = 4/245 (1%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ + V F Y + + I+A G SG GKST+ SL+ERFY+P +GEI
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEAM 500
+DG I + L+ R QIG V+Q+ A+ A TIREN+ YG + D T E++ + L+ A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
SF+ N+P++ T+VGERG+++SGGQ+QR+AI+RA ++NP IL+LDEAT++LD+ESE+ VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
+ALD +M GRTT+V+AHRLSTI +AD I ++ +I +G H EL++ + YA V Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
Query: 621 EAASQ 625
Q
Sbjct: 239 LTVGQ 243
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 420 bits (1081), Expect = e-138
Identities = 108/251 (43%), Positives = 164/251 (65%), Gaps = 2/251 (0%)
Query: 1010 ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
IE V+FSYP + K N + +G + ALVG +GSGKST+ L+ RF
Sbjct: 10 HEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69
Query: 1070 YDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEA 1129
YD G + + G ++ + N S+R I +V Q+ LF +I NILYGK A++ EVI+A
Sbjct: 70 YDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKA 128
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
K A + FI ALP+ + T VG +G++LSGG++QR+AIAR +LK+P+I++ DEATS+LD
Sbjct: 129 TKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDS 188
Query: 1190 ESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAY 1249
++E + Q+A++ L + RT II+AHRLSTI +A+ I ++ GKI+E+GTH L++ +G Y
Sbjct: 189 KTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEY 247
Query: 1250 FKLINLQQRQD 1260
++ N+Q +
Sbjct: 248 AEMWNMQSGGN 258
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 392 bits (1010), Expect = e-128
Identities = 105/258 (40%), Positives = 164/258 (63%), Gaps = 2/258 (0%)
Query: 368 SSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVI 427
S K +IEF DV+F YP + + IP+G ALVG +GSGKST+
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 428 SLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATM 487
L+ RFY+ G+I + G N+ + +R IG+V Q+ LF TI+ NILYGK DAT
Sbjct: 64 KLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122
Query: 488 EEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEA 547
EE+ +A K ++ FI LP++++T VG +G++LSGG++QRIAI+R ++K+P I++ DEA
Sbjct: 123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182
Query: 548 TSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
TS+LD+++E Q+A++ + RT +++AHRLSTI +A+ I ++ KIV+ G+H++L+
Sbjct: 183 TSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Query: 608 NPNSAYAALVQLQEAASQ 625
N YA + +Q +
Sbjct: 243 L-NGEYAEMWNMQSGGND 259
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 404 bits (1040), Expect = e-131
Identities = 132/272 (48%), Positives = 178/272 (65%), Gaps = 6/272 (2%)
Query: 993 VFEVLDRKTQVIGDIG-EELTNVEGTIELRGVHFSY-PSRPEVVIFKDFNLKVRAGKSMA 1050
+F++L +T+V G L +G IE VHFSY R +D + V G+++A
Sbjct: 28 MFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE---TLQDVSFTVMPGQTLA 84
Query: 1051 LVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSI 1110
LVG SG+GKST+L L+ RFYD ++G + +DG DI ++ SLR HI +V Q+ LF +I
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144
Query: 1111 YENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170
+NI YG+ A EV AA+ A H I A PEGY T+VGERG++LSGG+KQRVAIAR
Sbjct: 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204
Query: 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESG 1230
+LK P I+LLDEATSALD +ER +Q +L ++ RTTI+VAHRLST+ NADQI VI+ G
Sbjct: 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDG 264
Query: 1231 KIIEQGTHSSLVENEDGAYFKLINLQQRQDPQ 1262
I+E+G H +L+ G Y + LQQ Q+
Sbjct: 265 CIVERGRHEALLSR-GGVYADMWQLQQGQEET 295
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 356 bits (917), Expect = e-113
Identities = 117/266 (43%), Positives = 162/266 (60%), Gaps = 5/266 (1%)
Query: 373 RKLDKLSGHIEFKDVSFCY-PSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431
L G IEF++V F Y R + G+ +ALVG SG+GKST++ L+
Sbjct: 45 GPLRFQKGRIEFENVHFSYADGRE---TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF 101
Query: 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEIT 491
RFY+ SG I +DG +I + LR IG+V Q+ LF TI +NI YG+ A +E+
Sbjct: 102 RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVE 161
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
AA+ + I PE + TQVGERG++LSGG+KQR+AI+R I+K P I+LLDEATSAL
Sbjct: 162 AAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL 221
Query: 552 DAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNS 611
D +E ++Q +L +V RTT+VVAHRLST+ NAD I V++ IV+ G HE L+S
Sbjct: 222 DTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR-GG 280
Query: 612 AYAALVQLQEAASQQSNSSQCPNMGR 637
YA + QLQ+ + S ++ M R
Sbjct: 281 VYADMWQLQQGQEETSEDTKPQTMER 306
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 401 bits (1034), Expect = e-126
Identities = 165/592 (27%), Positives = 299/592 (50%), Gaps = 43/592 (7%)
Query: 683 SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITI 742
+ +L +RP + + ++ L + + + ++ + + +
Sbjct: 24 TLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDL--LPRYML 81
Query: 743 LFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASR 802
+ +T ++ ++ + + + R+R+++F + +G+FD + SR
Sbjct: 82 ILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIISR 139
Query: 803 LESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPL--IISGHI-- 858
+ +D + ++ + + + ++ F +N ++LV ++ PL +I+ +
Sbjct: 140 VINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSS 199
Query: 859 -SEKLFF--QGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKR 915
+ K F+ Q G L N + E +S + + F E+K +E + + E ++
Sbjct: 200 QTRKYFYENQRVLGQL-------NGIIEEDISGLTVIKLFTREEKEMEKF-DRVNESLRK 251
Query: 916 SFIRGQ-IAGIFYGISQFFIFSSYGLALWYGSVLMGK------ELASFKSVMKSFMVLIV 968
+ Q +G+ + + L +G L K +A+F + F +
Sbjct: 252 VGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLN 311
Query: 969 TALAMGETLALVPDLLKGNQMAAS----VFEVLDRKTQVIGDIGEELTNVEGTIELRGVH 1024
+ QMA + +FE+LD + + EL V G IE + V
Sbjct: 312 ELSNQFNMI----------QMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVW 361
Query: 1025 FSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI 1084
FSY + + KD ++ G+ +ALVG +GSGK+T+++L++RFYD G+++VDGIDI
Sbjct: 362 FSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419
Query: 1085 KRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPE 1144
+++ SLR I +V Q+ LF+T++ EN+ YG GA++ E+ EAAKL ++ FI LPE
Sbjct: 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPE 479
Query: 1145 GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR 1204
GY T + + G LS GQ+Q +AI RA L NP+IL+LDEATS +D ++E+ +Q A+ +LM
Sbjct: 480 GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME 539
Query: 1205 KRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
+T+II+AHRL+TIKNAD I V+ G+I+E G H L++ + G Y++L Q
Sbjct: 540 GKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ-KRGFYYELFTSQ 590
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-119
Identities = 178/599 (29%), Positives = 301/599 (50%), Gaps = 34/599 (5%)
Query: 33 KKQQQKRSVSLFKLFAFADFY--DYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAY 90
K + + +L +L + + I++ + + + GV P GK I+++
Sbjct: 15 KPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSP---YLIGKTIDVV---- 67
Query: 91 LFPKTASHKVAKYSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDIS 150
F + +Y L + W++ + + ++R + +
Sbjct: 68 -FVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVG 126
Query: 151 LFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLS 210
FD G++IS + +D+ + + L + F I G I+ F +SLVTLS
Sbjct: 127 FFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLS 185
Query: 211 IVPLIALAGGMYAYVTIGLIARVRKSYVK----AGEI---AEEVIGNVRTVQAFAGEDKA 263
IVPL L +T + ++ RK + + G++ EE I + ++ F E+K
Sbjct: 186 IVPLTVL-------ITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKE 238
Query: 264 VKVYKEALSNTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSV-VVHKHISNGG-ES 321
++ + + K G KA + G+ M+ V L ++L+ + + I+ G +
Sbjct: 239 MEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIAT 298
Query: 322 FTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGH 381
F L+ + + A A+A IFE++ D + +L ++ G
Sbjct: 299 FIGYSRQFTRPLN--ELSNQFNMIQMALASAERIFEIL--DLEEEKDDPDAVELREVRGE 354
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEFK+V F Y + I G+ VALVG +GSGK+T+++L+ RFY+ G+I
Sbjct: 355 IEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
L+DG +I+ + LR IG+V Q+ LF+TT++EN+ YG AT EEI AAKL+ +
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH 472
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
FI +LPE +ET + + G LS GQ+Q +AI+RA + NP IL+LDEATS +D ++E S+Q
Sbjct: 473 FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
A+ ++M G+T++++AHRL+TI+NAD+I V++ +IV+ G H+ELI Y L Q
Sbjct: 533 AMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQ 590
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 342 bits (879), Expect = e-104
Identities = 148/483 (30%), Positives = 256/483 (53%), Gaps = 24/483 (4%)
Query: 773 VREKMFSAILS---NEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVT 829
+R +F +LS + + F +S L +RL +D T L+ +V+ I+++ L
Sbjct: 98 LRRDLFRKVLSFSISNVNRF-----HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFV 152
Query: 830 ASFVIAFILNWRITLVVVATYPLIISG-----HISEKLFFQGYGGNLSKAYLKANMLAAE 884
V+A +N +++ V++ P I+ LF + ++ + N + E
Sbjct: 153 GGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLF-----RKIQESTDEVNRVVRE 207
Query: 885 AVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGIFYGISQFFIFSSYGLALWY 944
+ +R V AF E+ E + + + + + F + LW+
Sbjct: 208 NLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWF 267
Query: 945 GSVLMGKELASFKSVMK--SFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002
G VL+ S+M ++++ I+ +L M + +++ + A V EVL+ K
Sbjct: 268 GGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNF--IVRASASAKRVLEVLNEKPA 325
Query: 1003 VI-GDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKST 1061
+ D L NVEG++ V F Y + V+ N V+ G +A++G++GSGKST
Sbjct: 326 IEEADNALALPNVEGSVSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKST 384
Query: 1062 VLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGA 1121
+++LI R DP G+V VD +D++ + LK LR HI+ V QE LF+ +I EN+ +G++ A
Sbjct: 385 LMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDA 444
Query: 1122 SEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLD 1181
++ E++EAAK+A H FI +LPEGY ++V G SGGQKQR++IARA++K P++L+LD
Sbjct: 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD 504
Query: 1182 EATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSL 1241
+ TS++D +E+ + L+R + TT I+ ++ T AD+I V+ GK+ GTH L
Sbjct: 505 DCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
Query: 1242 VEN 1244
+E+
Sbjct: 565 LEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 332 bits (853), Expect = e-101
Identities = 132/478 (27%), Positives = 243/478 (50%), Gaps = 22/478 (4%)
Query: 157 STGEVISAITSDIIVVQDALSEKVGNFMHYISR----FLGGFIIGFARVWQISLVTLSIV 212
T +I+ +T+D+ +Q+ V + + R F+GG ++ + ++S V + ++
Sbjct: 118 HTSSLITRLTNDVTQLQNL----VMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLI 173
Query: 213 PLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALS 272
P I L L ++++S + + E + VR V+AF E+ + +++A
Sbjct: 174 PPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANE 233
Query: 273 NTYKYGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGE--SFTTMLNVVI 330
+ + A L ++ + ++W+ V+V + G ++T L ++
Sbjct: 234 SLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIM 293
Query: 331 AGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFC 390
SL + +RA A+A + E++ + + L + G + F++V F
Sbjct: 294 --FSLMMIGNILNFIVRASASAKRVLEVLNEKP-AIEEADNALALPNVEGSVSFENVEFR 350
Query: 391 YPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKG 450
Y D + + G +VA++G +GSGKST+++LI R +P G + +D +++
Sbjct: 351 YFENTDPVLSG-VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409
Query: 451 LDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510
+ LK LR I V QE LF+ TI+EN+ +G++DAT +EI AAK+++ FI +LPE +
Sbjct: 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGY 469
Query: 511 ETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR 570
+++V G SGGQKQR++I+RA+VK P +L+LD+ TS++D +E + + L R G
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529
Query: 571 TTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQE-AASQQS 627
TT ++ ++ T AD I V+ K+ G+H+EL+ + Y +E SQ
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPY------REIYESQFG 580
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 1e-59
Identities = 61/240 (25%), Positives = 115/240 (47%), Gaps = 5/240 (2%)
Query: 1015 EGTIELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073
G + ++ + Y I ++ + + G+ + L+G++GSGKST+LS LR +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 1074 AGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLA 1133
G++ +DG+ + L+ RK ++ Q+ +F+ + +N L S+ E+ + A
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEV 132
Query: 1134 NAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER 1193
S I P + + G LS G KQ + +AR+VL +ILLLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1194 VVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLI 1253
++++ L++ T I+ R+ + DQ VIE K+ + + L +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 4e-55
Identities = 70/287 (24%), Positives = 120/287 (41%), Gaps = 9/287 (3%)
Query: 380 GHIEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
G + KD++ Y AI + I G+ V L+G +GSGKST++S R
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-E 74
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSE 498
GEI +DG + + L+ R+ G++ Q+ +F+ T R+N L + +EI + A
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEVG 133
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
S I P + + + + G LS G KQ + ++R+++ ILLLDE ++ LD +
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 559 VQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQ 618
++ L + T ++ R+ + D V++ K+ + S EL P + A
Sbjct: 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFI 253
Query: 619 LQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFRSEKESV 665
S + N + R S V
Sbjct: 254 ----GSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQV 296
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 7e-53
Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 21/242 (8%)
Query: 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTA 1074
+ + V + V+ KD N K+ G+ +A+ G +G+GK+++L +I+ +P+
Sbjct: 4 TTEVVMENVTAFWEEGGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1075 GKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGK--DGASEGEVIEAAKL 1132
GK+ G I+ Q + +I ENI++G D VI+A +L
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109
Query: 1133 ANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE 1192
IS E + +GE G+ LSGGQ+ R+++ARAV K+ ++ LLD LDV +E
Sbjct: 110 EED---ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 1193 R-VVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFK 1251
+ + + + +LM +T I+V ++ +K AD+I ++ G GT S L +
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSS 225
Query: 1252 LI 1253
+
Sbjct: 226 KL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 3e-44
Identities = 59/241 (24%), Positives = 116/241 (48%), Gaps = 21/241 (8%)
Query: 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLS 438
+ + ++V+ + + D I G+++A+ G +G+GK++++ +I EP
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKD-INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK--DDATMEEITRAAKL 496
G+I G I +Q + TI+ENI++G D+ + +A +L
Sbjct: 63 GKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
E IS E+ +GE GI LSGGQ+ RI+++RA+ K+ + LLD LD +E
Sbjct: 110 EED---ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 557 NSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ + + ++M +T ++V ++ ++ AD I ++ G+ EL + +++
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSS 225
Query: 616 L 616
Sbjct: 226 K 226
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 6e-51
Identities = 78/253 (30%), Positives = 124/253 (49%), Gaps = 23/253 (9%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
+I +R F++ + + G +A+VGQ G GKS++LS +L D G
Sbjct: 2 NSITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1076 KVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASE--GEVIEAAKLA 1133
V + G +A V Q+ + S+ ENIL+G VI+A L
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107
Query: 1134 NAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE-SE 1192
+ LP G T++GE+GV LSGGQKQRV++ARAV N +I L D+ SA+D +
Sbjct: 108 PD---LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 1193 RVVQQAL--QRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYF 1250
+ + + + +++ +T I+V H +S + D I V+ GKI E G++ L+ DGA+
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFA 223
Query: 1251 KLINLQQRQDPQH 1263
+ + H
Sbjct: 224 EFLRTYASHHHHH 236
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 6e-44
Identities = 69/258 (26%), Positives = 128/258 (49%), Gaps = 31/258 (12%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
I ++ +F + + IP G +VA+VG G GKS+++S + + + G
Sbjct: 2 NSITVRNATFTWARSDPPTLNG-ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK--DDATMEEITRAAKLS 497
+ + G+ + V Q+ + ++RENIL+G ++ + +A L
Sbjct: 61 HVAIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+ LP T++GE+G+ LSGGQKQR++++RA+ N I L D+ SA+DA
Sbjct: 108 PD---LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH--- 161
Query: 558 SVQEAL-DRVMV------GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610
V + + + V+ +T ++V H +S + DVI V+ G KI + GS++EL++ +
Sbjct: 162 -VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-D 219
Query: 611 SAYAALVQLQEAASQQSN 628
A+A ++ + +
Sbjct: 220 GAFAEFLRTYASHHHHHH 237
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 1e-48
Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 21/275 (7%)
Query: 994 FEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVG 1053
+ ++ + N + + + FS S + KD N K+ G+ +A+ G
Sbjct: 12 AFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAG 71
Query: 1054 QSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYEN 1113
+G+GK+++L +I+ +P+ GK+ G I+ Q + +I EN
Sbjct: 72 STGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKEN 118
Query: 1114 ILYGK--DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV 1171
I+ G D VI+A +L IS E + +GE G+ LSGGQ+ R+++ARAV
Sbjct: 119 II-GVSYDEYRYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISLARAV 174
Query: 1172 LKNPEILLLDEATSALDVESERVV-QQALQRLMRKRTTIIVAHRLSTIKNADQISVIESG 1230
K+ ++ LLD LDV +E+ + + + +LM +T I+V ++ +K AD+I ++ G
Sbjct: 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
Query: 1231 KIIEQGTHSSLVENEDGAYFKLINLQQRQDPQHSQ 1265
GT S L + + D ++
Sbjct: 235 SSYFYGTFSELQNL-RPDFSSKLMGCDSFDQFSAE 268
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 4e-41
Identities = 64/276 (23%), Positives = 122/276 (44%), Gaps = 26/276 (9%)
Query: 368 SSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVI 427
+ RK + F + S + I G+++A+ G +G+GK++++
Sbjct: 27 QNNNNRKTSNGDDSLSFSNFSLLGT-----PVLKDINFKIERGQLLAVAGSTGAGKTSLL 81
Query: 428 SLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK--DDA 485
+I EP G+I G I +Q + TI+ENI+ G D+
Sbjct: 82 MMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENII-GVSYDEY 127
Query: 486 TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLD 545
+ +A +L E IS E+ +GE GI LSGGQ+ RI+++RA+ K+ + LLD
Sbjct: 128 RYRSVIKACQLEED---ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 184
Query: 546 EATSALDAESENSV-QEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEE 604
LD +E + + + ++M +T ++V ++ ++ AD I ++ G+ E
Sbjct: 185 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244
Query: 605 LISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLS 640
L + +++ + ++ Q S + + L
Sbjct: 245 LQNL-RPDFSSKLMGCDSFDQFSAERRNSILTETLH 279
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 5e-46
Identities = 49/235 (20%), Positives = 102/235 (43%), Gaps = 26/235 (11%)
Query: 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L+ V + + E ++ NL+V G+ + ++G +GSGK+T+L I P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFA--TSIYENILYGKD--GASEGEVIEAAKL 1132
+ ++G++++++ R +I P + ++ + + ++ G +E K
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1133 ANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE 1192
L E + + +LS GQ V + A+ PEI+ LDE +D
Sbjct: 115 LK-------LGEEILRR---KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 1193 RVVQQALQRLMRKRTTIIVAHRLST-IKNADQISVIESGKIIEQ-GTHSSLVENE 1245
V+ + ++ + I+V H L + + G ++ + S L+E+
Sbjct: 165 HVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-45
Identities = 49/244 (20%), Positives = 95/244 (38%), Gaps = 24/244 (9%)
Query: 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I+ K+V + + + L++ G+ V ++G +GSGK+T++ I P SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 441 ILLDGNNIKGLDLKWLRQQIGLVNQEPALFA--TTIRENILYGKDDATMEEITRAAKLSE 498
I ++G ++ + R I P + T+ + + ++ ++ E
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR----DLFLE 110
Query: 499 AMSFISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
+ + L E R + +LS GQ + S A+ P I+ LDE +DA +
Sbjct: 111 MLKAL-KLGEEIL----RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165
Query: 558 SVQEALDRVMVGRTTVVVAHRLST-IRNADVIAVV-QGRKIVKTGSHEELISNPNSAYAA 615
+ + G+ ++V H L + A G ++ S EL+ +
Sbjct: 166 VISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGER 223
Query: 616 LVQL 619
L
Sbjct: 224 NDAL 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 1e-43
Identities = 61/233 (26%), Positives = 111/233 (47%), Gaps = 26/233 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+++ ++++Y + K N+ ++ G+ A++G +G GKST+ P++G++
Sbjct: 8 LKVEELNYNYSDGTHAL--KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1078 MVDGIDI--KRLNLKSLRKHIALVQQEPA--LFATSIYENILYGKD--GASEGE----VI 1127
+ D I R + LR+ I +V Q+P LF+ S+Y+++ +G E E V
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
A K LS GQK+RVAIA ++ P++L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 1188 DVESERVVQQALQRLMRKR--TTIIVAHRLSTI-KNADQISVIESGKIIEQGT 1237
D + + L + ++ T II H + + D + V++ G++I QG
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 9e-38
Identities = 58/241 (24%), Positives = 119/241 (49%), Gaps = 26/241 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ +++++ Y ++I G++ A++GG+G GKST+ +P SG I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 442 LLDGNNI--KGLDLKWLRQQIGLVNQEPA--LFATTIRENILYGKDDATM--EEITRAAK 495
L D I + LR+ IG+V Q+P LF+ ++ +++ +G + + +EI +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 496 LSEAMSF--ISNLPER--FETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
A+ I +L ++ LS GQK+R+AI+ +V P +L+LDE T+ L
Sbjct: 126 --NALKRTGIEHLKDKPTHC---------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 552 DAESENSVQEALDRVM--VGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISN 608
D + + + L + +G T ++ H + + D + V++ +++ G+ +E+ +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 609 P 609
Sbjct: 235 K 235
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 2e-43
Identities = 60/240 (25%), Positives = 112/240 (46%), Gaps = 17/240 (7%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I+L + + I K + ++ G L G +G+GK+T+L+++ + T+G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1078 MVDGIDIKRL--NLKSLRKHIALVQQEPAL---FATSIYENILYGKDGASEG--EVIEAA 1130
+ G ++ + +++R+HI V + + ++ G S G + I+
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFK-SIGVYQDIDDE 137
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
AH + + G S K + LS G+KQRV IARA++ P++L+LDE + LD
Sbjct: 138 IRNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI 195
Query: 1191 SERVVQQALQRLMRKRTT---IIVAHRLSTIKNA-DQISVIESGKIIEQGTHSSLVENED 1246
+ + L L T I V H + I +I +++ G+ I+QG ++ +E+
Sbjct: 196 ARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSEN 255
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 6e-38
Identities = 52/245 (21%), Positives = 105/245 (42%), Gaps = 27/245 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ + + I K I G L G +G+GK+T+++++ + SG +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 442 LLDGNNI--KGLDLKWLRQQIGLVNQEPAL---FATTIRENILYGKDDA-------TMEE 489
L G G + +RQ IG V+ + + ++ G + E
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 490 ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549
A +L + + + + + +G LS G+KQR+ I+RA++ P +L+LDE +
Sbjct: 139 RNEAHQLLKLV----GMSAKAQQYIG----YLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 550 ALDAESENSVQEALDRVM---VGRTTVVVAHRLSTIRNA-DVIAVVQGRKIVKTGSHEEL 605
LD + S+ LD + + V H + I I +++ + ++ G+ E++
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
Query: 606 ISNPN 610
+++ N
Sbjct: 251 LTSEN 255
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-42
Identities = 66/255 (25%), Positives = 119/255 (46%), Gaps = 27/255 (10%)
Query: 1018 IELRGVHFSYPSRP--EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
IE+ V + E ++ +L + G+ + + G +GSGKST+L ++ +PT+G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1076 KVMVDGIDIKRLNLKSLRKHIALVQQEPA--LFATSIYENILYGKD--GASEGE---VIE 1128
V+ DG +R++I + Q P FA +++ + + V +
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 1129 AAKLAN--AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
A + SF +P LSGG+K+RVAIA ++ P+IL+LDE
Sbjct: 120 AMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 1187 LDVESERVVQQALQRLMRKRTTII-VAHRLSTI-KNADQISVIESGKIIEQGTHSSLVEN 1244
LD E + + + +++ T+I ++H + T+ + D++ V+E GK + GT +E
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Query: 1245 EDGAYFKLINLQQRQ 1259
D +F L R+
Sbjct: 229 YDPRFFTSKMLVMRR 243
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 2e-38
Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 17/247 (6%)
Query: 382 IEFKDVSFCYPSRP--DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
IE +VS + + + L I G+ + + G +GSGKST++ ++ EP SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPA--LFATTIRENILYG-KDDATMEEITRAAKL 496
++L DG K +R+ IG+ Q P FA + + + + K+ + K
Sbjct: 63 DVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK- 118
Query: 497 SEAMSFISNLPERFETQVGERG-IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+AM F+ + F+ +R LSGG+K+R+AI+ IV P IL+LDE LD E
Sbjct: 119 -KAMEFVGLDFDSFK----DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 556 ENSVQEALDRV-MVGRTTVVVAHRLSTI-RNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
+ + +++ +G+T ++++H + T+ + D + V++ K V G+ E + + +
Sbjct: 174 KTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 233
Query: 614 AALVQLQ 620
L
Sbjct: 234 FTSKMLV 240
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 9e-41
Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 25/234 (10%)
Query: 1018 IELRGVHFSYPSR-PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L + + + + +L V AG+ ++G SG+GKST++ + PT G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1077 VMVDGIDIKRLN---LKSLRKHIALVQQEPALFAT-SIYENILY-----GKDGAS-EGEV 1126
V+VDG ++ L+ L R+ I ++ Q L ++ +++ N+ + V
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
E L G K LSGGQKQRVAIARA+ NP++LL D+ATSA
Sbjct: 145 TELLSLV-----------GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 1187 LDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
LD + R + + L+ + R+ T +++ H + +K D ++VI +G++IEQ T
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 4e-40
Identities = 71/280 (25%), Positives = 141/280 (50%), Gaps = 20/280 (7%)
Query: 382 IEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I+ +++ + + + L +PAG+I ++G SG+GKST+I + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 441 ILLDGNNIKGLD---LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKL 496
+L+DG + L L R+QIG++ Q L ++ T+ N+ + + ++
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
+E +S + L ++ ++ LSGGQKQR+AI+RA+ NP +LL D+ATSALD +
Sbjct: 145 TELLSLV-GLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199
Query: 557 NSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
S+ E L + +G T +++ H + ++ D +AV+ ++++ + E+ S+P +
Sbjct: 200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 259
Query: 614 A-ALV------QLQEAASQQSNSSQCPNMGRPLSIKFSRE 646
A + + E ++ + + L ++F+ +
Sbjct: 260 AQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQ 299
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-36
Identities = 58/269 (21%), Positives = 101/269 (37%), Gaps = 33/269 (12%)
Query: 1000 KTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGK 1059
I D E+L N + + + + + ++G++G+GK
Sbjct: 334 LQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGENGTGK 391
Query: 1060 STVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYG 1117
+T++ L+ P G+ I +LN+ + IA LF I L
Sbjct: 392 TTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL-- 443
Query: 1118 KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177
+ + K I + LSGG+ QRVAI A+ +I
Sbjct: 444 ----NPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQRVAIVLALGIPADI 488
Query: 1178 LLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIE 1234
L+DE ++ LD E + + ++R + K+T IV H AD++ V E
Sbjct: 489 YLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN 548
Query: 1235 QGTHS--SLVENEDGAYFKLINLQQRQDP 1261
+ SL+ + + K +N+ R+DP
Sbjct: 549 AHARAPESLLTGCN-RFLKNLNVTFRRDP 576
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-32
Identities = 51/264 (19%), Positives = 99/264 (37%), Gaps = 34/264 (12%)
Query: 360 ERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGS 419
E A + + D S + + + + + +I+ ++G +
Sbjct: 332 EALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF----VLNVEEGEFSDSEILVMMGEN 387
Query: 420 GSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIREN 477
G+GK+T+I L+ +P G+ + N + Q+I LF IR
Sbjct: 388 GTGKTTLIKLLAGALKPDEGQDIPKLN------VSMKPQKIAPKFPGTVRQLFFKKIRGQ 441
Query: 478 ILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537
L + ++ + ++ + + ++ V LSGG+ QR+AI A+
Sbjct: 442 FL---NPQFQTDVVKPLRIDDII-------DQE---VQH----LSGGELQRVAIVLALGI 484
Query: 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGR 594
I L+DE ++ LD+E + + R + +T +V H AD + V +G
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Query: 595 KIVK--TGSHEELISNPNSAYAAL 616
+ E L++ N L
Sbjct: 545 PSKNAHARAPESLLTGCNRFLKNL 568
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 6e-31
Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 36/242 (14%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
T V Y + + R G+ + LVG +G GKST L ++ P G+
Sbjct: 77 TNLEAHVTHRYSANSFKL---HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 1077 VMVDGID---IKRLNLKSLRKH-IALVQQEPA---------LFATSIYENILYG------ 1117
IK L+ + +++ + +I +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 1118 KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEI 1177
+ S +V K+ + + E +LSGG+ QR AI + ++ ++
Sbjct: 194 RMEKSPEDVKRYIKILQLENVLKRDIE-----------KLSGGELQRFAIGMSCVQEADV 242
Query: 1178 LLLDEATSALDVESERVVQQALQRLMRKRTTIIVA-HRLSTIKN-ADQISVIESGKIIEQ 1235
+ DE +S LDV+ Q ++ L+ +I H LS + +D + +I G
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIY-GVPSVY 301
Query: 1236 GT 1237
G
Sbjct: 302 GV 303
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 7e-29
Identities = 46/236 (19%), Positives = 92/236 (38%), Gaps = 31/236 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIP-AGKIVALVGGSGSGKSTVISLI--------ER 432
V+ Y + F L P G+++ LVG +G GKST + ++ R
Sbjct: 78 NLEAHVTHRYSANS----FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 433 FYEPLSGEILL---DGNNIKGLDLKWLRQQIGLVNQEP--ALFATTIRENILYGKDDATM 487
F +P + ++ G+ ++ K L I + + I+ + + +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 488 EEITRAAKLSEAMSF--ISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLL 544
+ + + N+ +R I +LSGG+ QR AI + V+ + +
Sbjct: 194 RMEKSPEDVKRYIKILQLENVLKRD--------IEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 545 DEATSALDAESENSVQEALDRVMVGRTTVVVA-HRLSTIRN-ADVIAVVQGRKIVK 598
DE +S LD + + + + ++ V+ H LS + +D + ++ G V
Sbjct: 246 DEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 8e-36
Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 21/242 (8%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IEF V YP I G++V L+G SGSGK+T++ LI P G++
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
+ G + L + ++ +GLV Q ALF T+ +N+ +G + + + A++ E +
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 501 SFISNLPERFETQVGERGI-QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
F+ L R +LSGGQ+QR+A++RA+ P +LL DE +A+D + +
Sbjct: 131 RFM-RLES-----YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
Query: 560 QEALDRV--MVGRTTVVVAH----RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
+ + +V +G T+V V H L AD + V+ + + G+ EE+ P + +
Sbjct: 185 RTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
Query: 614 AA 615
A
Sbjct: 242 VA 243
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 31/234 (13%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
TIE GV YP V + + ++R G+ + L+G SGSGK+T+L LI PT G
Sbjct: 14 TIEFVGVEKIYPGGARSV--RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG--KDGASEGE----VIEA 1129
V + G + L + ++++ LV Q ALF ++Y+N+ +G + + E V E
Sbjct: 72 VWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL 129
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
+ S+ + P +LSGGQ+QRVA+ARA+ P++LL DE +A+D
Sbjct: 130 LRFMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT 178
Query: 1190 ESERVVQQALQRLMRKR--TTIIVAH----RLSTIKNADQISVIESGKIIEQGT 1237
+ R ++ ++++ + T++ V H L AD++ V+ G + + GT
Sbjct: 179 QIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGT 229
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-35
Identities = 38/209 (18%), Positives = 87/209 (41%), Gaps = 31/209 (14%)
Query: 1037 KDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096
+ + + G + G +G GK+T+L I + P G+++ +G+ I ++ + I
Sbjct: 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKI 80
Query: 1097 ALVQQEPALFAT-SIYENI-----LYGKDGASE--GEVIEAAKLANAHSFISALPEGYST 1148
+ +E + S+ + + LYG + +E+ ++ + +
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLG-------- 132
Query: 1149 KVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR-T 1207
+LS G +RV +A +L N EI +LD+ A+D +S+ V +++ +++++
Sbjct: 133 -------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185
Query: 1208 TIIVAHRLSTIKNADQISVIESGKIIEQG 1236
II + + D +
Sbjct: 186 VIISSREELSY--CDVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 42/226 (18%), Positives = 99/226 (43%), Gaps = 37/226 (16%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +D+S Y D + ++ + I G +V G +G GK+T++ I + +PL GEI
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI-----LYG--KDDATMEEITRA 493
+ G+ + ++ +I + +E + ++ + + LYG + + + +
Sbjct: 67 I-----YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 494 AKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
++ + + L S G +R+ ++ ++ N I +LD+ A+D
Sbjct: 122 VEVLDLKKKLGEL---------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 554 ESENSVQEALDRVMVGRTTVVVA--HRLSTIRNADVIAVVQGRKIV 597
+S++ V +++ ++ + V+++ LS DV +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSY---CDVNENLHKYSTK 209
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 60/235 (25%), Positives = 114/235 (48%), Gaps = 24/235 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ ++ + + + K + ++ G+ L+G +G+GK+T L +I P++G V
Sbjct: 16 VVVKDLRKRIGKKEIL---KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENI-----LYGKDGASEGEVI-EAA 1130
V G ++ +RK I+ + +E + E + Y + E++ A
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
++A L E +V S G +++ IARA++ NP + +LDE TS LDV
Sbjct: 132 EIAG-------LGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 1191 SERVVQQALQRLMRKRTTIIV-AHRLSTI-KNADQISVIESGKIIEQGTHSSLVE 1243
+ R V++ L++ ++ TI+V +H + + D+I++I +G I+E GT L E
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 2e-28
Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ KD+ + + +I G+I L+G +G+GK+T + +I +P SG +
Sbjct: 16 VVVKDLRKRIGKKEIL---KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENI-----LYGKDDATMEEITRAAK 495
+ G N+ + +R+ I + +E + E + Y + +EE +
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE--MVER 129
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
+E L E+ + +V S G +++ I+RA++ NP + +LDE TS LD +
Sbjct: 130 ATEIA----GLGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181
Query: 556 ENSVQEALDRVMVGRTTVVV-AHRLSTI-RNADVIAVVQGRKIVKTGSHEEL 605
V++ L + T++V +H + + D IA++ IV+TG+ EEL
Sbjct: 182 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 4e-35
Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 28/243 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE + +S + + ++ D L + +G+ ++G +G+GK+ + LI F+ P SG I
Sbjct: 2 IEIESLSRKWK---NFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
LLDG ++ L + + I V Q +LF +++N+ +G M++I ++ +
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFG---MRMKKIKDPKRVLDTA 112
Query: 501 SF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
I +L +R LSGG++QR+A++RA+V NP ILLLDE SALD ++ +
Sbjct: 113 RDLKIEHLLDRNPLT-------LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 559 VQEALDRV--MVGRTTVVVAH----RLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
+E L + T + + H AD IAVV K+++ G EE+ P
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEIFEKPVEG 222
Query: 613 YAA 615
A
Sbjct: 223 RVA 225
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-33
Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 30/230 (13%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE+ + + + + +LKV +G+ ++G +G+GK+ L LI F+ P +G++
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG--KDGASEGE-VIEAAKLA 1133
++DG D+ +L + IA V Q +LF ++ +N+ +G + + V++ A+
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1134 NAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER 1193
+ P LSGG++QRVA+ARA++ NP+ILLLDE SALD ++
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 1194 VVQQALQRLMRK--RTTIIVAH----RLSTIKNADQISVIESGKIIEQGT 1237
++ L L +K T + + H AD+I+V+ GK+I+ G
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGK 211
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 5e-35
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 28/215 (13%)
Query: 1036 FKDF--NLKVRAGKS-MALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL 1092
+F N+ G+ L+G +G+GKS L LI P G+V ++G DI L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPE 68
Query: 1093 RKHIALVQQEPALFA-TSIYENILYGKDGASEGE----VIEAAKLANAHSFISALPEGYS 1147
R+ I V Q+ ALF S+Y NI YG E V E A+ + P
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA--- 125
Query: 1148 TKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR- 1206
+LSGG++QRVA+ARA++ P +LLLDE SA+D++++ V+ + L+ + R+
Sbjct: 126 --------RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177
Query: 1207 -TTIIVAHRLS---TIKNADQISVIESGKIIEQGT 1237
+ V H L + AD+++V+ +G+I+E+G
Sbjct: 178 VPILHVTHDLIEAAML--ADEVAVMLNGRIVEKGK 210
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 1e-34
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 400 FDKFCLDI---PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456
F L++ L+G +G+GKS + LI +P GE+ L+G +I L +
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE-- 68
Query: 457 RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVG 515
R+ IG V Q+ ALF ++ NI YG + E R + I++L +R +
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR-- 126
Query: 516 ERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTTV 573
LSGG++QR+A++RA+V P +LLLDE SA+D +++ + E L V +
Sbjct: 127 -----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 574 VVAHRLS---TIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
V H L + AD +AV+ +IV+ G +E + + + A
Sbjct: 182 HVTHDLIEAAML--ADEVAVMLNGRIVEKGKLKE-LFSAKNGEVA 223
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 5e-35
Identities = 71/238 (29%), Positives = 116/238 (48%), Gaps = 35/238 (14%)
Query: 1018 IELRGVHFSYPS-RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD-PTAG 1075
++L+ V +Y + K+ NL ++ G+ ++++G SGSGKST+L+ I+ D PT G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEG 60
Query: 1076 KVMVDGIDIKRLNLKSL----RKHIALVQQEPALFA-TSIYEN-----ILYGKDGASEGE 1125
+V +D I L+ L R I V Q+ L + EN I + S E
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 1126 VIEAAKLANAHSFISALPEGYSTKVG--ERGV-----QLSGGQKQRVAIARAVLKNPEIL 1178
+ A L ER QLSGGQ+QRVAIARA+ NP I+
Sbjct: 121 RRKRAL--------ECL-----KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 1179 LLDEATSALDVESERVVQQALQRLMRK--RTTIIVAHRLSTIKNADQISVIESGKIIE 1234
L D+ T ALD ++ + Q L++L + +T ++V H ++ + ++I ++ G++
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 15/207 (7%)
Query: 382 IEFKDVSFCYPS-RPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
++ K+V+ Y + L+I G+ V+++G SGSGKST++++I +P GE
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 441 ILLDGNNIKGLD---LKWLR-QQIGLVNQEPALFA-TTIRENI---LYGKDDATMEEITR 492
+ +D LD L +R +IG V Q+ L T EN+ L K M R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
+ E + L ERF + QLSGGQ+QR+AI+RA+ NP I+L D+ T ALD
Sbjct: 122 RKRALECLKMA-ELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 553 AESENSVQEALDRV--MVGRTTVVVAH 577
+++ + + L ++ G+T VVV H
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTH 204
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 7e-35
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 26/250 (10%)
Query: 378 LSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPL 437
++ + +S + + P + + L + G+I+ ++G SG GK+T++ + F +P
Sbjct: 1 MTAALHIGHLSKSFQNTPVL---NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD 57
Query: 438 SGEILLDGNNIKGLDLKWL---RQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRA 493
SGEI L G I L +++G + QE LF T+ NI YG +
Sbjct: 58 SGEISLSGKTIFS-KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQER 116
Query: 494 AKLSEAMSFI--SNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
++ + S L R+ + LSGGQ+QR A++RA+ +P ++LLDE SAL
Sbjct: 117 QRIEAMLELTGISELAGRYPHE-------LSGGQQQRAALARALAPDPELILLDEPFSAL 169
Query: 552 DAESENSVQEALDRVM--VGRTTVVVAH----RLSTIRNADVIAVVQGRKIVKTGSHEEL 605
D + ++E + + G++ V V+H L AD IAV++ +I++T S EL
Sbjct: 170 DEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTASPHEL 226
Query: 606 ISNPNSAYAA 615
P AA
Sbjct: 227 YRQPADLDAA 236
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 1e-34
Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 32/235 (13%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ + + S+ + P + D +L + G+ + ++G SG GK+T+L + F P +G++
Sbjct: 5 LHIGHLSKSFQNTPVL---NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1078 MVDGIDI--KRLNLKSLRKHIALVQQEPALFA-TSIYENILYG--KDGASEGE----VIE 1128
+ G I K NL + + + QE LF ++Y NI YG + +
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA 121
Query: 1129 AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
+L P +LSGGQ+QR A+ARA+ +PE++LLDE SALD
Sbjct: 122 MLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSALD 170
Query: 1189 VESERVVQQALQRLMRKR--TTIIVAH----RLSTIKNADQISVIESGKIIEQGT 1237
+ R +++ + +R + + V+H L AD+I+V++ G+I++ +
Sbjct: 171 EQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTAS 222
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 2e-34
Identities = 78/250 (31%), Positives = 124/250 (49%), Gaps = 50/250 (20%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ + +H Y EV K +L+ RAG ++++G SGSGKST L I P+ G +
Sbjct: 7 LHVIDLHKRYGGH-EV--LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 1078 MVDGIDI-------------KRLNLKSLRKHIALVQQEPALFA-TSIYENILYGK---DG 1120
+V+G +I + L+ LR + +V Q L++ ++ EN++ G
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 1121 ASEGEVIEAAKLANAHSFISALPEGYSTKVG--ERG-----VQLSGGQKQRVAIARAVLK 1173
S+ + E A Y KVG ER V LSGGQ+QRV+IARA+
Sbjct: 124 LSKHDARERA-------------LKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM 170
Query: 1174 NPEILLLDEATSALDVESERVVQQALQRLMRK-----RTTIIVAHRLSTIKN-ADQISVI 1227
P++LL DE TSALD E +V + L R+M++ +T ++V H + ++ + + +
Sbjct: 171 EPDVLLFDEPTSALDPE---LVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 226
Query: 1228 ESGKIIEQGT 1237
GKI E+G
Sbjct: 227 HQGKIEEEGD 236
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 77/237 (32%), Positives = 116/237 (48%), Gaps = 45/237 (18%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI-------------KGL 451
L AG +++++G SGSGKST + I +P G I+++G NI
Sbjct: 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 86
Query: 452 DLKWLRQQIGLVNQEPALFA-TTIRENILYG--------KDDATMEEITRAAKLSEAMSF 502
L+ LR ++ +V Q L++ T+ EN++ K DA RA K +
Sbjct: 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA----RERALKYLAKV-- 140
Query: 503 ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEA 562
+ ER + + LSGGQ+QR++I+RA+ P +LL DE TSALD E V E
Sbjct: 141 --GIDERAQGKYPV---HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEV 192
Query: 563 LDRVMV-----GRTTVVVAHRLSTIRN-AD-VIAVVQGRKIVKTGSHEELISNPNSA 612
L +M G+T VVV H + R+ + VI + QG+ I + G E++ NP S
Sbjct: 193 LR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK-IEEEGDPEQVFGNPQSP 247
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 4e-34
Identities = 73/218 (33%), Positives = 108/218 (49%), Gaps = 21/218 (9%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNI--KGLDLKWLRQQIGL 462
+ I G++V ++G SGSGKST + + + GEI++DG N+ K +L +R+++G+
Sbjct: 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGM 104
Query: 463 VNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAMSFIS--NLPERFETQVGERGI 519
V Q LF T+ NI + + R ++AM + L ++
Sbjct: 105 VFQRFNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD---- 158
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV-----GRTTVV 574
LSGGQ QR+AI+RA+ P I+L DE TSALD E V E L VM G T VV
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLS-VMKQLANEGMTMVV 214
Query: 575 VAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611
V H + R D + + G I++ G E+L P
Sbjct: 215 VTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 252
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-33
Identities = 69/236 (29%), Positives = 115/236 (48%), Gaps = 22/236 (9%)
Query: 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071
+++ I++ + S+ + + K N+ +R G+ + ++G SGSGKST L + D
Sbjct: 19 SHMLQMIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75
Query: 1072 PTAGKVMVDGIDI--KRLNLKSLRKHIALVQQEPALFA-TSIYENILYGK---DGASEGE 1125
G++++DGI++ K NL +R+ + +V Q LF ++ NI +
Sbjct: 76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREK 135
Query: 1126 VIEAAKLANAHSFISALPE--GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183
A L + G K LSGGQ QRVAIARA+ P+I+L DE
Sbjct: 136 AEAKAM---------ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 1184 TSALDVESERVVQQALQRLMRKRTT-IIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
TSALD E V +++L + T ++V H + + D++ ++ G IIE+G
Sbjct: 187 TSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 8e-34
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 25/238 (10%)
Query: 1030 RPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNL 1089
+ N + + G+ + ++G +G GK+T +++ G V + +
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQ 337
Query: 1090 KSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTK 1149
+ + VQQ + + ++ L E EV + L H + +
Sbjct: 338 RIFPNYDGTVQQ----YLENASKDALSTSSWFFE-EVTKRLNL---HRLLESNVN----- 384
Query: 1150 VGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRT 1207
LSGG+ Q++ IA + K ++ +LD+ +S LDVE +V +A++R+ R K
Sbjct: 385 ------DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
Query: 1208 TIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDG--AYFKLINLQQRQDPQ 1262
T I+ H LS AD+I V + G+ + G +S V + G + + + + R+D +
Sbjct: 439 TFIIDHDLSIHDYIADRIIVFK-GEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAE 495
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 7e-30
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 18/213 (8%)
Query: 1036 FKDFNLKV-RAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR- 1093
FK F L + + ++G++G GK+TVL ++ P G + K LK R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRG 71
Query: 1094 KHIALVQQEP---ALFATSIYENILYGKDGASE---GEVIEAAKLANAHSFISALPEGYS 1147
K I +E L + + + AS+ G V E + + E +
Sbjct: 72 KEIYNYFKELYSNELKIVHKIQYV----EYASKFLKGTVNEILTKIDERGKKDEVKELLN 127
Query: 1148 -TKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK 1205
T + + LSGG QR+ +A ++L+ ++ + D+ +S LDV + +A++ L++
Sbjct: 128 MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN 187
Query: 1206 RTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
+ I+V H L + D I +I G+ G
Sbjct: 188 KYVIVVDHDLIVLDYLTDLIHIIY-GESSVYGR 219
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-29
Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 24/257 (9%)
Query: 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSG 420
R K K LD + D + + G+I+ ++G +G
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDN-GEAKEGEIIGILGPNG 304
Query: 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480
GK+T ++ G + + + + Q N + T+++ +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILS------YKPQRIFPNYD-----GTVQQYLEN 353
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
DA ++++ + NL E+ V + LSGG+ Q++ I+ + K
Sbjct: 354 ASKDALSTSSWFFEEVTKRL----NLHRLLESNVND----LSGGELQKLYIAATLAKEAD 405
Query: 541 ILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597
+ +LD+ +S LD E V +A+ RV T ++ H LS AD I V +G
Sbjct: 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEK 465
Query: 598 K-TGSHEELISNPNSAY 613
+ + + +
Sbjct: 466 AGLATSPVTLKTGMNEF 482
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 5e-26
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 41/234 (17%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIP-AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443
+V Y V F F L P I+ ++G +G GK+TV+ ++ P G+
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP-- 56
Query: 444 DGNNIKGLDLKWLR-------------------QQIGLVNQEPALFATTIRENILYGKDD 484
+ K LK R +I V T+ E +
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEIL------ 110
Query: 485 ATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLL 544
++E + ++ E ++ ++NL + LSGG QR+ ++ ++++ + +
Sbjct: 111 TKIDERGKKDEVKELLN-MTNLWNK---DAN----ILSGGGLQRLLVAASLLREADVYIF 162
Query: 545 DEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597
D+ +S LD ++ +A+ ++ + +VV H L + D+I ++ G V
Sbjct: 163 DQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV 216
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-33
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 24/229 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ + I K +L V+ G+ ++++G SGSGKST+L ++ PT GKV
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 1078 MVDGIDIKRLNLKSL----RKHIALV-QQEPALFATSIYENI----LYGKDGASEGEVIE 1128
++G ++ N K L + + V Q + + EN+ L G + E E
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM--GKPKKEAKE 119
Query: 1129 AAKLANAHSFISALPE-GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
+ L E G K+ + +LSGG++QRVAIARA+ P +L DE T L
Sbjct: 120 RGE--------YLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNL 171
Query: 1188 DVESERVVQQALQRLMRKRTTII-VAHRLSTIKNADQISVIESGKIIEQ 1235
D + + V ++ T+I+ V H + + ++ GK++ +
Sbjct: 172 DSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 22/206 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ +++ I L + G+ V+++G SGSGKST++ ++ P G++
Sbjct: 5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 442 LLDGNNIKGLD---LKWLR-QQIGLVNQEPALFA-TTIRENI----LYGKDDATMEEITR 492
L+G + + L LR +++G V Q L T EN+ L E R
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK-EAKER 120
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
L + L ++ + + +LSGG++QR+AI+RA+ P +L DE T LD
Sbjct: 121 GEYLLSEL----GLGDK----LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
Query: 553 AESENSVQEALDRV-MVGRTTVVVAH 577
+ + V + ++ G + V+V H
Sbjct: 173 SANTKRVMDIFLKINEGGTSIVMVTH 198
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-33
Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 41/234 (17%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ + + F Y + +F+ N + G +A++GQ+G GKST+L L+L + P GK+
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1078 MVDGIDIKRLNLKSLRKHIALV-QQEPALFATSIYENILYG---------KDGASEGEVI 1127
+ + I V Q + FA S+ + +L G K + + +V
Sbjct: 63 -------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 1128 EAAKLANAHSFISALPEGYSTKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
A L + ++ L +R LSGGQ+Q + IARA+ +++LLDE TSA
Sbjct: 110 MQA-LDYLN--LTHL--------AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 1187 LDVESERVVQQALQRLMRK--RTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
LD+ ++ +V L L + T + H+ + + A++ ++ + + G
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN-KQNFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 8e-32
Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 49/247 (19%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ +++ F Y + +F + D+ G I+A++G +G GKST++ L+ + P+ G+I
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEP-ALFATTIRENILYG------------KDDATME 488
+ Q IG V Q + FA ++ + +L G D
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD---Y 106
Query: 489 EITRAAKLSEAMSF--ISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
++ +A+ + +++L +R + LSGGQ+Q I I+RAI ++LLDE
Sbjct: 107 QVAM-----QALDYLNLTHLAKR---EFTS----LSGGQRQLILIARAIASECKLILLDE 154
Query: 547 ATSALDAESENSVQEALDRVMV--GRTTVVVAHRLST-IRNADVIAVVQGRKIVKTGSHE 603
TSALD +++ V L + T V H+ + + A+ ++ + K G
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF-KFGETR 213
Query: 604 ELISNPN 610
++++ N
Sbjct: 214 NILTSEN 220
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-32
Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 35/261 (13%)
Query: 1009 EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068
E +E + Y S + ++R G+ + +VG +G GK+T + ++
Sbjct: 349 RVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 404
Query: 1069 FYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYGKDGASEGEV 1126
+PT GKV D + ++I + L + + + E+
Sbjct: 405 VEEPTEGKVEWDL------TVAYKPQYIKAEYEGTVYELLSKIDSSKL---NSNFYKTEL 455
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
++ + + Y V + LSGG+ QRVAIA +L++ +I LLDE ++
Sbjct: 456 LKPLGIIDL----------YDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAY 501
Query: 1187 LDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243
LDVE V +A++ LM ++T ++V H + I +D++ V E G+ G +
Sbjct: 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHGRALPPMG 560
Query: 1244 NEDG--AYFKLINLQQRQDPQ 1262
+G + + + R+DP
Sbjct: 561 MREGMNRFLASVGITFRRDPD 581
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-29
Identities = 47/223 (21%), Positives = 82/223 (36%), Gaps = 32/223 (14%)
Query: 1032 EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG-IDIKRLNLK 1090
V+ G + +VG +G+GK+T + ++ P + I+
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 1091 SLRKH--------IALVQQEPALFATSIYENILYGKDG------ASEGEVIEAAKLANAH 1136
L+ + I V + + + GK G+ E K
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQY---VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE 219
Query: 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQ 1196
+ + QLSGG+ QRVAIA A+L+ DE +S LD+ V
Sbjct: 220 NVLDRELH-----------QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268
Query: 1197 QALQRLMRKRTTIIVA-HRLSTIKN-ADQISVIESGKIIEQGT 1237
+ ++RL + ++V H L+ + +D I V+ G+ G
Sbjct: 269 RVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY-GEPGVYGI 310
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 1e-28
Identities = 51/243 (20%), Positives = 104/243 (42%), Gaps = 29/243 (11%)
Query: 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSG 420
R + + + R + +E+ + Y S + +I G+++ +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480
GK+T + ++ EP G++ D Q I + T+ E +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYK------PQYIKAEYEG------TVYELLS- 439
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
++ +E + + + + ++ V + LSGG+ QR+AI+ ++++
Sbjct: 440 ---KIDSSKLNSNFYKTELLKPL-GIIDLYDRNVED----LSGGELQRVAIAATLLRDAD 491
Query: 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597
I LLDE ++ LD E +V A+ +M +T +VV H + I +D + V +G +
Sbjct: 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG-EPG 550
Query: 598 KTG 600
+ G
Sbjct: 551 RHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 3e-27
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 18/222 (8%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS-----LIERFYE-PLS 438
+D Y A + G +V +VG +G+GK+T + LI E S
Sbjct: 95 EDCVHRYG---VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGKDDATMEEITRAAKLS 497
+ ++ L + R + G + + + + + GK ++++ K
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPK-AVKGKVRELLKKVDEVGKFE 210
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
E + L + ++ QLSGG+ QR+AI+ A+++ DE +S LD
Sbjct: 211 EVVK-ELELENVLDRELH----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 265
Query: 558 SVQEALDRVMVGRTTVVVA-HRLSTIRN-ADVIAVVQGRKIV 597
V + R+ V+V H L+ + +DVI VV G V
Sbjct: 266 KVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGV 307
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 5e-32
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 31/218 (14%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK 1094
+ +VRAG+ + LVG +G+GKST+L+ + G + G ++ + L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1095 HIALV-QQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGER 1153
H A + QQ+ FAT ++ + + + E++ + R
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDV-AGALA--LDDK--------LGR 122
Query: 1154 GV-QLSGGQKQRVAIARAVL-------KNPEILLLDEATSALDVESERVVQQALQRLMRK 1205
QLSGG+ QRV +A VL ++LLLDE ++LDV Q AL +++
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ----QSALDKILSA 178
Query: 1206 -----RTTIIVAHRLS-TIKNADQISVIESGKIIEQGT 1237
++ +H L+ T+++A + +++ GK++ G
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 7e-29
Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 29/223 (13%)
Query: 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458
++ AG+I+ LVG +G+GKST+++ + G I G ++ L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLAL 73
Query: 459 QIGLVNQEPAL-FATTIRENILYG----KDDATMEEITRAAKLSEAMSFISNLPERFETQ 513
++Q+ FAT + + + ++ A L + R
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-------KLGRSTN- 125
Query: 514 VGERGIQLSGGQKQRIAISRAIV-------KNPSILLLDEATSALDAESENSVQEALDRV 566
QLSGG+ QR+ ++ ++ +LLLDE ++LD ++++ + L +
Sbjct: 126 ------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 567 -MVGRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELIS 607
G V+ +H L+ T+R+A +++G K++ +G EE+++
Sbjct: 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 6e-32
Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 1009 EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068
E + + Y S + +++ G+ + +VG +G GK+T + ++
Sbjct: 279 RVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG 334
Query: 1069 FYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEP--ALFATSIYENILYGKDGASEGEV 1126
+PT GK+ D + ++I + L + + + E+
Sbjct: 335 VEEPTEGKIEWDL------TVAYKPQYIKADYEGTVYELLSKIDASKL---NSNFYKTEL 385
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQ-LSGGQKQRVAIARAVLKNPEILLLDEATS 1185
++ + + + +R V LSGG+ QRVAIA +L++ +I LLDE ++
Sbjct: 386 LKPLGIIDLY---------------DREVNELSGGELQRVAIAATLLRDADIYLLDEPSA 430
Query: 1186 ALDVESERVVQQALQRLMRKR--TTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242
LDVE V +A++ LM K T ++V H + I +D++ V E G+ + G +
Sbjct: 431 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-GEPGKYGRALPPM 489
Query: 1243 ENEDG--AYFKLINLQQRQDP 1261
+G + I + R+DP
Sbjct: 490 GMREGMNRFLASIGITFRRDP 510
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 6e-29
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 25/219 (11%)
Query: 1036 FKDFNL-KVRAGKSMALVGQSGSGKSTVLSLIL-----RFYD-PTAGKVMVDGIDIKRLN 1088
F + L V+ G + +VG +G+GKST + ++ + ++ L
Sbjct: 36 FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ 95
Query: 1089 --LKSLR-KHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEG 1145
+ L+ I V + + I + A +G+VIE K A+ + + +
Sbjct: 96 NYFEKLKNGEIRPVVKPQ--YVDLIPK--------AVKGKVIELLKKADETGKLEEVVKA 145
Query: 1146 YS-TKVGERGV-QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM 1203
V ER + LSGG+ QRVAIA A+L+N DE +S LD+ +A++RL
Sbjct: 146 LELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205
Query: 1204 RKRTTIIVA-HRLSTIKN-ADQISVIESGKIIEQGTHSS 1240
+ +++V H L+ + +D I V+ G+ G S
Sbjct: 206 EEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYGIFSQ 243
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-28
Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 29/243 (11%)
Query: 361 RDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSG 420
R K + R + + + + Y S + +I G+++ +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 421 SGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILY 480
GK+T + ++ EP G+I D K Q I + T+ E +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVAY----K--PQYIKADYEG------TVYELL-- 368
Query: 481 GKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540
++ +E + + + + ++ +V E LSGG+ QR+AI+ ++++
Sbjct: 369 --SKIDASKLNSNFYKTELLKPL-GIIDLYDREVNE----LSGGELQRVAIAATLLRDAD 421
Query: 541 ILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597
I LLDE ++ LD E +V A+ +M +T +VV H + I +D + V +G +
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG-EPG 480
Query: 598 KTG 600
K G
Sbjct: 481 KYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-25
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 24/225 (10%)
Query: 385 KDVSFCYPSRPDVAIFDKFCLDIP-AGKIVALVGGSGSGKSTVIS-----LIERFYE-PL 437
+D Y F + L + G +V +VG +G+GKST + LI
Sbjct: 25 EDCVHRYGVNA----FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDND 80
Query: 438 SGEILLDGNNIKGL---DLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAA 494
S + ++ L K +I V + + I + + GK +++
Sbjct: 81 SWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLIPK-AVKGKVIELLKKADETG 137
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
KL E + + L E ++ LSGG+ QR+AI+ A+++N + DE +S LD
Sbjct: 138 KLEEVVKAL-ELENVLEREIQ----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192
Query: 555 SENSVQEALDRVMVGRTTVVVA-HRLSTIRN-ADVIAVVQGRKIV 597
+ A+ R+ +V+V H L+ + +D+I VV G V
Sbjct: 193 QRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGV 237
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-29
Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 31/237 (13%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I ++ V + V + + N+ + G+ ++G SG+GK+T + +I P+ G+
Sbjct: 3 RIIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1077 VMVDGIDIKRLNLKSL---RKHIALVQQEPALFAT-SIYENILYG----KDGASEGE--V 1126
+ D + + + I +V Q AL+ + +ENI + K E V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
E AK+ + H ++ P +LSG Q+QRVA+ARA++K+P +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1187 LDV---ESERVVQQALQRLMRKRTTIIVAHRLS---TIKNADQISVIESGKIIEQGT 1237
LD +S R + + +Q + T ++V+H + I AD++ V+ GK+++ G
Sbjct: 171 LDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVGK 224
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 5e-28
Identities = 77/249 (30%), Positives = 125/249 (50%), Gaps = 29/249 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I K+VS + VA+ D ++I G+ ++G SG+GK+T + +I P +GE+
Sbjct: 4 IIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 442 LLDG---NNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEIT 491
D + L + ++IG+V Q AL+ T ENI + + + +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
AK+ + I ++ F + LSG Q+QR+A++RA+VK+PS+LLLDE S L
Sbjct: 123 EVAKILD----IHHVLNHFPRE-------LSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 552 DAESENSVQEALDRV--MVGRTTVVVAHRLS---TIRNADVIAVVQGRKIVKTGSHEELI 606
DA +S + + V +G T +VV+H + I AD + V+ K+V+ G E+L
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVGKPEDLY 229
Query: 607 SNPNSAYAA 615
NP S A
Sbjct: 230 DNPVSIQVA 238
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 84/240 (35%), Positives = 122/240 (50%), Gaps = 44/240 (18%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L + + + + NLK++ G+ MAL+G SGSGKST+L I Y PT+GK
Sbjct: 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYG----KDGASEGE--VIEA 1129
+ D D+ L K +++ LV Q AL+ ++Y+NI + K E + V E
Sbjct: 60 IYFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
AK+ + ++ P QLSGGQ+QRVAIARA++K PE+LLLDE S LD
Sbjct: 118 AKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Query: 1190 E---SERVVQQALQRLMRKRTTIIVAHRLSTIKNADQ---------ISVIESGKIIEQGT 1237
R + LQ+ + TT+ V H DQ I+VI G+I++ GT
Sbjct: 167 LLRLEVRAELKRLQKEL-GITTVYVTH--------DQAEALAMADRIAVIREGEILQVGT 217
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-23
Identities = 79/254 (31%), Positives = 124/254 (48%), Gaps = 46/254 (18%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I+ +++ + + + L I G+ +AL+G SGSGKST++ I Y+P SG+I
Sbjct: 4 IKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEITRAA 494
D ++ L K + +GLV Q AL+ T+ +NI + + +++ A
Sbjct: 61 YFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA 118
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
K+ I L R QLSGGQ+QR+AI+RA+VK P +LLLDE S LDA
Sbjct: 119 KMLH----IDKLLNR-------YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDAL 167
Query: 555 ------SE-NSVQEALDRVMVGRTTVVVAH------RLSTIRNADVIAVVQGRKIVKTGS 601
+E +Q+ L G TTV V H + AD IAV++ +I++ G+
Sbjct: 168 LRLEVRAELKRLQKEL-----GITTVYVTHDQAEALAM-----ADRIAVIREGEILQVGT 217
Query: 602 HEELISNPNSAYAA 615
+E+ P +
Sbjct: 218 PDEVYYKPKYKFVG 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 3e-23
Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 34/243 (13%)
Query: 1019 ELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVM 1078
E++ +H Y + + K +LKV G+ + L+G +G+GK+T LS I GK++
Sbjct: 8 EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1079 VDGIDIKRLNLKSL-RKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAH 1136
+G DI + R IALV + +F ++YEN++ G A +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG-----------AYNRKDKE 113
Query: 1137 SFISALPEGYST--KVGERGVQ----LSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
L +S ++ ER Q LSGG++Q +AI RA++ P++L++DE + L
Sbjct: 114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL--- 170
Query: 1191 SERVVQQ---ALQRLMRKRTTIIV----AHRLSTIKNADQISVIESGKIIEQGTHSSLVE 1243
+ +V + +Q++ ++ TTI++ A +K A V+E+G+I+ +G S L++
Sbjct: 171 APILVSEVFEVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228
Query: 1244 NED 1246
NE
Sbjct: 229 NEM 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 85.2 bits (212), Expect = 2e-18
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 15/148 (10%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQQIGLV 463
L +P G+IV L+G +G+GK+T +S I G+I+ +G +I + R I LV
Sbjct: 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86
Query: 464 NQEPALFAT-TIRENILYG----KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERG 518
+ +F T+ EN++ G KD ++ L S L ER + G
Sbjct: 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKR-----DLEWIFSLFPRLKERLKQLGG--- 138
Query: 519 IQLSGGQKQRIAISRAIVKNPSILLLDE 546
LSGG++Q +AI RA++ P +L++DE
Sbjct: 139 -TLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 45/238 (18%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
++L + + + NL ++ G+ + L+G SG GK+T L +I +PT G+
Sbjct: 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYG----KDGASEGE--VIEA 1129
+ D+ L K ++I++V Q A++ ++YENI + K E + V A
Sbjct: 68 IYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 125
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
A+L ++ P QLSGGQ+QRVA+ARA++ P++LL+DE S LD
Sbjct: 126 AELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
Query: 1190 E---SERVVQQALQRLMRKRTTIIVAHRLSTIKNADQ---------ISVIESGKIIEQ 1235
+ + R + LQ+ + K TTI V H DQ I+V+ G + Q
Sbjct: 175 KLRVAMRAEIKKLQQKL-KVTTIYVTH--------DQVEAMTMGDRIAVMNRG-QLLQ 222
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 5e-20
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 54/258 (20%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++++ + + +K L I G+ + L+G SG GK+T + +I EP G I
Sbjct: 12 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEITRAA 494
++ L K + I +V Q A++ T+ ENI + D + + AA
Sbjct: 69 YFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+L + I L R QLSGGQ+QR+A++RAIV P +LL+DE S LDA+
Sbjct: 127 ELLQ----IEELLNR-------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
Query: 555 SENSVQEALDRV-M----------VGRTTVVVAH------RLSTIRNADVIAVVQGRKIV 597
L RV M + TT+ V H + D IAV+ +++
Sbjct: 176 --------L-RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTM-----GDRIAVMNRGQLL 221
Query: 598 KTGSHEELISNPNSAYAA 615
+ GS E+ PNS + A
Sbjct: 222 QIGSPTEVYLRPNSVFVA 239
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 3e-22
Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 46/241 (19%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+I + + + V + +V+ G+ +AL+G SG GK+T L ++ Y PT+G+
Sbjct: 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 1077 VMVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYG----KDGASEGE--VIEA 1129
+ D + + + K + + +V Q AL+ +++ENI + + E E V+E
Sbjct: 60 IYFDDVLVNDIPPKY--REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI 117
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
A+ + + P QLSGGQ+QRVA+ARA++K P++LL DE S LD
Sbjct: 118 ARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
Query: 1190 E---SERVVQQALQRLMRKRTTIIVAHRLSTIKNADQ---------ISVIESGKIIEQ-G 1236
R + LQ+ + T++ V H DQ I+V G + Q G
Sbjct: 167 NLRMIMRAEIKHLQQEL-GITSVYVTH--------DQAEAMTMASRIAVFNQG-KLVQYG 216
Query: 1237 T 1237
T
Sbjct: 217 T 217
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 1e-20
Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 54/258 (20%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I ++ + V D ++ G+ VAL+G SG GK+T + ++ Y+P SGEI
Sbjct: 4 IRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYG------KDDATMEEITRAA 494
D + + K +++G+V Q AL+ T+ ENI + D + + A
Sbjct: 61 YFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIA 118
Query: 495 KLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554
+ I NL +R + QLSGGQ+QR+A++RA+VK P +LL DE S LDA
Sbjct: 119 RKLL----IDNLLDR-------KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA- 166
Query: 555 SENSVQEALDRV-M----------VGRTTVVVAH------RLSTIRNADVIAVVQGRKIV 597
L R+ M +G T+V V H + A IAV K+V
Sbjct: 167 -------NL-RMIMRAEIKHLQQELGITSVYVTHDQAEAMTM-----ASRIAVFNQGKLV 213
Query: 598 KTGSHEELISNPNSAYAA 615
+ G+ +E+ +P + + A
Sbjct: 214 QYGTPDEVYDSPKNMFVA 231
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 4e-22
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 57/247 (23%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+ L V + V ++ +L+V+ G+ M L+G SG GK+T L +I +P+ G+
Sbjct: 3 GVRLVDVWKVFGEVTAV---REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1077 VMVDGIDIKRLNLKSLRKH-------IALVQQEPALFAT-SIYENILYG----KDGASEG 1124
+ + K + IA+V Q AL+ ++Y+NI + K E
Sbjct: 60 IYIGD---KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI 116
Query: 1125 E--VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDE 1182
+ V E A+L ++ P +LSGGQ+QRVA+ RA+++ P++ L+DE
Sbjct: 117 DQRVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDE 165
Query: 1183 ATSALD----VESERVVQQALQRLMRKRTTII-VAHRLSTIKNADQ---------ISVIE 1228
S LD V R + LQR + T I V H DQ I+V+
Sbjct: 166 PLSNLDAKLRVRM-RAELKKLQR--QLGVTTIYVTH--------DQVEAMTMGDRIAVMN 214
Query: 1229 SGKIIEQ 1235
G +++Q
Sbjct: 215 RG-VLQQ 220
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 1e-18
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ DV + +V + L++ G+ + L+G SG GK+T + +I EP G+I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 442 LLDGNNIKGLDLKWLRQ----QIGLVNQEPALFAT-TIRENILYG------KDDATMEEI 490
+ + + I +V Q AL+ T+ +NI + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
A+L ++ L R + +LSGGQ+QR+A+ RAIV+ P + L+DE S
Sbjct: 121 REVAELLG----LTELLNR-------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 551 LDA 553
LDA
Sbjct: 170 LDA 172
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 16/214 (7%)
Query: 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL-RKHI 1096
++ V G ++G +GSGKST++++I F G+V + DI L I
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 1097 ALVQQEPALFAT-SIYENILYGKDGASEGEVI----------EAAKLANAHSFISALPEG 1145
Q P ++ EN+L G+ E + E + A + L
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--K 142
Query: 1146 YSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK 1205
S + +LSGGQ + V I RA++ NP+++++DE + + + + L K
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 1206 RTTI-IVAHRLSTIKN-ADQISVIESGKIIEQGT 1237
T I+ HRL + N D + V+ +G+II +G
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 6e-18
Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 38/241 (15%)
Query: 401 DKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460
D + + G + ++G +GSGKST+I++I F + G + + +I + ++
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE----PAEL 79
Query: 461 ---GLVN--QEPALFAT-TIRENILYGKDDAT-------------MEEITRAAKLSEAMS 501
G+V Q P T+ EN+L G+ +E K + +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
F+ L ++ + G +LSGGQ + + I RA++ NP ++++DE + + + +
Sbjct: 140 FL-KLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 562 ALDRV-MVGRTTVVVAHRLSTIRN-ADVIAVV-QGRKIVKTGSHEELI----SNPN--SA 612
+ + G T +++ HRL + N D + V+ G+ I + G EE I S+P
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE-GRGEEEIKNVLSDPKVVEI 253
Query: 613 Y 613
Y
Sbjct: 254 Y 254
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 1e-18
Identities = 75/240 (31%), Positives = 115/240 (47%), Gaps = 44/240 (18%)
Query: 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
+++L+ V ++ EVV+ KD NL + G+ + VG SG GKST+L +I T+G
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 1077 VMVDGIDIKRLN-LKSLRKHIALVQQEPALFA-TSIYENILYG-K-DGASEGE----VIE 1128
+ + KR+N + + +V Q AL+ S+ EN+ +G K GA + V +
Sbjct: 60 LFIGE---KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ 116
Query: 1129 AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
A++ + P+ LSGGQ+QRVAI R ++ P + LLDE S LD
Sbjct: 117 VAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 1189 VE---SERVVQQAL-QRLMRKRTTIIVAH------RLSTIKNADQISVIESGKIIEQ-GT 1237
R+ L +RL RT I V H L AD+I V+++G + Q G
Sbjct: 166 AALRVQMRIEISRLHKRL--GRTMIYVTHDQVEAMTL-----ADKIVVLDAG-RVAQVGK 217
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-16
Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 29/183 (15%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLI---ERFYEPLS 438
++ ++V+ + +V + LDI G+ V VG SG GKST++ +I E S
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TITS 57
Query: 439 GEILLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATM--EEITR--- 492
G++ + + + +G+V Q AL+ ++ EN+ +G A E I +
Sbjct: 58 GDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN 115
Query: 493 -AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL 551
A++ + +++L +R + LSGGQ+QR+AI R +V PS+ LLDE S L
Sbjct: 116 QVAEVLQ----LAHLLDR-------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164
Query: 552 DAE 554
DA
Sbjct: 165 DAA 167
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 90.1 bits (223), Expect = 2e-18
Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 33/236 (13%)
Query: 1029 SRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN 1088
+ ++ L+++ + + G +G GKST++ I VDG +
Sbjct: 444 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQVDGFPTQE-E 494
Query: 1089 LKSLRKHIALVQQEPALFAT--SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGY 1146
+ V+ + + S+ + + G E F E
Sbjct: 495 CR-----TVYVEHDIDGTHSDTSVLDFVFESGVGTKE----AIKDKLIEFGF---TDEMI 542
Query: 1147 STKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKR 1206
+ + LSGG K ++A+ARAVL+N +ILLLDE T+ LD + + L
Sbjct: 543 AMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GI 596
Query: 1207 TTIIVAHRLSTIKN-ADQISVIESGKIIE-QGTHSSLVE--NEDGAYFKLINLQQR 1258
T+I ++H + N + I E K+ + +G + V+ AY +L N
Sbjct: 597 TSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLE 652
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 2e-16
Identities = 49/236 (20%), Positives = 92/236 (38%), Gaps = 28/236 (11%)
Query: 342 ITAFIRAKAAAYPIFEMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFD 401
+T F+ K A + E +R + + + + S Y ++ + +
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452
Query: 402 KFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461
K L + + + G +G GKST++ I + + + ++ I
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAI-------ANGQVDGFPTQEECRTVYVEHDI- 504
Query: 462 LVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQL 521
+ T + ++ T E I KL E F E + L
Sbjct: 505 -----DGTHSDTSVLDFVFESGVGTKEAI--KDKLIE-FGF---TDEMIAMPISA----L 549
Query: 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAH 577
SGG K ++A++RA+++N ILLLDE T+ LD + + L+ G T++ ++H
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 8e-12
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 1156 QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRL 1215
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL+ + II+ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA 958
Query: 1216 STIKN-ADQISVIESGKII 1233
KN +++ ++ G++
Sbjct: 959 EFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 2e-08
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRL 579
LSGGQK ++ ++ + P +++LDE T+ LD +S ++ +AL +++ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSA 958
Query: 580 STIRN-ADVIAVVQGRKIVKTG 600
+N + + V+ ++ +G
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 7e-06
Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 20/231 (8%)
Query: 343 TAFIRAKAAAYPIFEMIERD---TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAI 399
T F++ AA E+ D + G K K ++ ++ F YP
Sbjct: 631 TEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVK-TKQKAIVKVTNMEFQYPG-TSKPQ 688
Query: 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459
+A++G +G+GKST+I+++ P SGE+ N +
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT-HENCR---------- 737
Query: 460 IGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI 519
I + Q + + + + A I+ ++ +
Sbjct: 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFK--- 794
Query: 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR 570
+ G ++ I + + ++ + V
Sbjct: 795 -IEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAW 844
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-05
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+++ + F YP D N + +A++G +G+GKST+++++ PT+G+V
Sbjct: 672 VKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 29/235 (12%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL---RFYDPTAGKVMVDGIDIKRLNLKS 1091
I + +L V G+ A++G +GSGKST LS L Y+ T G V G D+ L L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKST-LSATLAGREDYEVTGGTVEFKGKDL--LALSP 91
Query: 1092 ---LRKHIALVQQEP--------ALFATSIYENILYGKDGASEGEVIEAAKLANAHSFIS 1140
+ I + Q P F + N + G + + L +
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL-NAVRSYRGQETLDRFDFQDLMEEKIALL 150
Query: 1141 ALPEGYSTKVGERGVQ--LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQA 1198
+PE R V SGG+K+R I + + PE+ +LDE+ S LD+++ +VV
Sbjct: 151 KMPEDLL----TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 1199 LQRLMRK-RTTIIVAH--R-LSTIKNADQISVIESGKIIEQGTHSSLVENEDGAY 1249
+ L R+ IIV H R L IK D + V+ G+I++ G + + + E+ Y
Sbjct: 207 VNSLRDGKRSFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDFTLVKQLEEQGY 260
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLI---ERFYEPLSGEILLDGNNIKGLDLK-WLRQQI 460
LD+ G++ A++G +GSGKST+ + + E YE G + G ++ L L R
Sbjct: 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDL--LALSPEDRAGE 97
Query: 461 G--LVNQEP--------ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510
G + Q P F T + + T++ + E ++ + +PE
Sbjct: 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL-KMPEDL 156
Query: 511 ETQVGERGIQ--LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV 568
R + SGG+K+R I + V P + +LDE+ S LD ++ V + ++ +
Sbjct: 157 ----LTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 212
Query: 569 -GRTTVVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
R+ ++V H R+ D + V+ +IVK+G
Sbjct: 213 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 33/235 (14%)
Query: 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLIL---RFYDPTAGKVMVDGIDIKRLNLKS 1091
I K NL V G+ AL+G +G+GKST L IL Y G++++DG +I L L
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKST-LGKILAGDPEYTVERGEILLDGENI--LELSP 74
Query: 1092 ---LRKHIALVQQEP--------ALFATSIYENILYGKDGASEGEVIEAAKLANAHSFIS 1140
RK + L Q P A F + E V E +
Sbjct: 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAK-----LGREVGVAEFWTKVKKALELL 129
Query: 1141 ALPEGYSTKVGERGVQ--LSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQA 1198
E Y R + SGG+K+R I + ++ P +LDE S LD+++ +VV +
Sbjct: 130 DWDESYL----SRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARG 185
Query: 1199 LQRLMRK-RTTIIVAH--R-LSTIKNADQISVIESGKIIEQGTHSSLVENEDGAY 1249
+ + +++ H R L+ I+ D++ V+ G+++ G +E E Y
Sbjct: 186 VNAMRGPNFGALVITHYQRILNYIQ-PDKVHVMMDGRVVATGGPELALELEAKGY 239
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 31/218 (14%)
Query: 405 LDIPAGKIVALVGGSGSGKSTVISLI---ERFYEPLSGEILLDGNNIKGLDLK-WLRQQI 460
L +P G++ AL+G +G+GKST+ ++ Y GEILLDG NI L+L R +
Sbjct: 24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENI--LELSPDERARK 80
Query: 461 G--LVNQEP--------ALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERF 510
G L Q P A F + + + E K+ +A+ + + E +
Sbjct: 81 GLFLAFQYPVEVPGVTIANFLRLALQAK--LGREVGVAEFWT--KVKKALELL-DWDESY 135
Query: 511 ETQVGERGIQ--LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMV 568
R + SGG+K+R I + +V P+ +LDE S LD ++ V ++ +
Sbjct: 136 ----LSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191
Query: 569 -GRTTVVVAH--RLSTIRNADVIAVVQGRKIVKTGSHE 603
+V+ H R+ D + V+ ++V TG E
Sbjct: 192 PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 2e-10
Identities = 85/612 (13%), Positives = 173/612 (28%), Gaps = 202/612 (33%)
Query: 342 ITAFIRAKAAAYPIF--EMIERD---TMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPD 396
+ + F E++ + MS ++ + +IE +D + D
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----ND 122
Query: 397 VAIFDKF-------------CL--DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+F K+ L PA ++ + G GSGK+ ++ ++
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTW-----------VALDV 170
Query: 442 LLDGNNIKGLDLK--WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEA 499
L +D K WL + N + + + +LY D +
Sbjct: 171 CLSYKVQCKMDFKIFWLN--LKNCNSPETVLE--MLQKLLYQID----------PNWTSR 216
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
SN+ R S + R + +N +L+L + ++ +
Sbjct: 217 SDHSSNIKLRIH----------SIQAELRRLLKSKPYEN-CLLVLL------NVQNAKAW 259
Query: 560 QEALD---RVMVGRTTVVVAHRLSTIRNADVIAVVQG--RKIVKTGSHEELISNPNS--- 611
A + ++++ TT R V + + H ++
Sbjct: 260 -NAFNLSCKILL--TT----------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 612 -AYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTSFGASFR----------- 659
+ Q+ + ++ P + S R
Sbjct: 307 LLKYLDCRPQDLPREVLTTN-------PRRLSI----------IAESIRDGLATWDNWKH 349
Query: 660 --SEKESVLSHGAADATEPATAKHVSAIKLYSMVRPDWTYGVCGTICAII-AGAQMPLFA 716
+K + + + + EPA + K++ ++ A +P
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYR-----KMFDR-------------LSVFPPSAHIP--- 388
Query: 717 LGVSQALVAYYMDW-DTTQREVKKITILFCCAAVI-------TVIVHAIEHLSFGIMGER 768
+ L W D + +V + +++ T+ + +I +L +
Sbjct: 389 ---TILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLEL-----K 436
Query: 769 LTLRVREKMFSAILS--NEIGWFDEMDNSSSIL-------------ASRLESDATLLRTI 813
+ L + +I+ N FD D L TL R +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 814 VVDRSTIL--IQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHIS------EKL--- 862
+D + I++ TA ILN TL + Y +I E+L
Sbjct: 497 FLDFRFLEQKIRHDS--TAWNASGSILN---TLQQLKFY----KPYICDNDPKYERLVNA 547
Query: 863 ---FFQGYGGNL 871
F NL
Sbjct: 548 ILDFLPKIEENL 559
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 3e-09
Identities = 90/613 (14%), Positives = 196/613 (31%), Gaps = 168/613 (27%)
Query: 594 RKIVKTGSHEELISNPNSAYAALVQLQEAASQQSNSSQCPNMGRPLSIKFSRELSGTRTS 653
+ I+ + +I + ++ L S+Q Q KF E+
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ----------KFVEEVLRINYK 92
Query: 654 FGAS-FRSEKESVLSHGAADATEPATAKHVSAI-KLYSMVRPDWTYGVCGTICAIIAGAQ 711
F S ++E+ T ++ +LY+ + Y V + +
Sbjct: 93 FLMSPIKTEQR---------QPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLR 141
Query: 712 MPLFALGVSQALVAYYMDWDTTQREVK---KITILFCCAAVITVIVHAIE-HLSFGI--- 764
L L ++ ++ + K T + A+ + + ++ + F I
Sbjct: 142 QALLELRPAKNVLIDGV---------LGSGK-TWV----ALDVCLSYKVQCKMDFKIFWL 187
Query: 765 -MGE----RLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRST 819
+ L + +K+ I N W D+SS+I R+ S LR ++ +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNI-KLRIHSIQAELRRLLKSKPY 243
Query: 820 -----IL--------IQNFG-----LVTASF--VIAFILNWRITLVVVATYPLIISGHIS 859
+L F L+T F V F+ T + + + + ++
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 860 EKLFFQGYGGNLSKAYLKANMLAAEAVSN----IRTVAAFCSED---------------- 899
+ L L + L E ++ + +A +
Sbjct: 304 KSLL-------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 900 KVLELYSRELVEPS--KRSFIRGQIAGIFYGISQFFIF------SSYGLA-LWYGSV--- 947
++E S ++EP+ ++ F + +F + L+ +W+ +
Sbjct: 357 TIIES-SLNVLEPAEYRKMFD------------RLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 948 --LMGKELASFKSVM----KSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKT 1001
++ +L S++ K + I L L L + S+ + +
Sbjct: 404 VMVVVNKLHK-YSLVEKQPKESTISI-----PSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 1002 QVIGDIGEELTNVEGTI-ELRGVHFSYPSRPEVV-----IFKDFNL---KVRAGKSMALV 1052
D ++ G H PE + +F DF K+R
Sbjct: 458 TFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH------D 510
Query: 1053 GQSGSGKSTVLSLI--LRFY-------DPTAGKVMVDGID-IKRLNLKSLR-KHIALVQQ 1101
+ + ++L+ + L+FY DP +++ +D + ++ + K+ L++
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 1102 EPALFA--TSIYE 1112
AL A +I+E
Sbjct: 571 --ALMAEDEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 2e-08
Identities = 65/364 (17%), Positives = 118/364 (32%), Gaps = 89/364 (24%)
Query: 946 SVLMGKE---LASFKSVMKSFMVLIVTALAMGETLA--LVPDLLKGN-QMAASVFEVLDR 999
S+L +E + K + + L T L+ E + V ++L+ N + S + R
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 1000 KTQVIGDIGEE----LTNVEGTIELRGVHFSYPSRPEVVI-FKDFNLKVRAGKSMALVGQ 1054
+ ++ + E L N V SR + + + L++R K++ + G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 1055 SGSGKSTVLSLILRFYDP-----------TAGKVMVDGIDIKRL-NL------------- 1089
GSGK+ V + Y ++ L L
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 1090 --KSLRKHIALVQQEPA-LFATSIYEN---ILYGKDGASEGEVIEAAKLANAHSFISALP 1143
+++ I +Q E L + YEN +L + A F
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNA--------F----- 262
Query: 1144 EGYSTKV----GERGV--QLSGGQKQRVAIARAVLKNPEILLLDEATS----ALDVESER 1193
S K+ + V LS +++ + L DE S LD +
Sbjct: 263 -NLSCKILLTTRFKQVTDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 1194 VVQQALQ---RLMRKRTTIIVA---HRLSTIKNADQISVIESGKIIEQGTHSSLVENEDG 1247
+ ++ L R + +II L+T N ++ + IIE + + L E
Sbjct: 318 LPREVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYR 372
Query: 1248 AYFK 1251
F
Sbjct: 373 KMFD 376
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 4e-08
Identities = 84/624 (13%), Positives = 176/624 (28%), Gaps = 204/624 (32%)
Query: 726 YYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNE 785
++MD++T + + + +++V A + + + M +ILS E
Sbjct: 5 HHMDFETGEHQ-------YQYKDILSVFEDAFV--------DNFDCKDVQDMPKSILSKE 49
Query: 786 IGWFDEMDNSSSILASRLESDATLL--------RTIVVDR--STILIQNFGLVTASFVIA 835
E+D+ I+ S+ TL + +V + +L N+ + +
Sbjct: 50 -----EIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 836 FILNWRITLVVVATY-------PLIISGHIS-EKLFFQGYGGNLSKAYLKAN-------- 879
+T + + + ++S + + + L +A L+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-----LRQALLELRPAKNVLID 156
Query: 880 -M-------LAAEAVSNIRTVAAF------------CSEDKVLE----LYSR---ELVEP 912
+ +A + + + S + VLE L +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 913 SKRSF-IRGQIAGIFYGISQFFIFSSYGLAL------WYGSVLMGKELASF--------- 956
S S I+ +I I + + Y L +F
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-----NAFNLSCKILLT 271
Query: 957 ---KSVMKSFMVLIVTALAM---------GETLAL--------VPDL----LKGNQMAAS 992
K V T +++ E +L DL L N S
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 993 VF-EVL---------------DRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIF 1036
+ E + D+ T +I L E R F + +F
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE----PAEYRK-MFD-----RLSVF 381
Query: 1037 KDFNLKVRAGKSMALVGQSGSG--------KSTVLSLILRFYDPTAGKVMVDGI--DIKR 1086
+ + ++L+ K SL+ + P + + I ++K
Sbjct: 382 PP-SAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISIPSIYLELKV 437
Query: 1087 LNLKSLRKHIALVQQ--EPALFATS----------IYENILYGKDGASEGEVIE------ 1128
H ++V P F + Y +I + E +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 1129 ------AAKLANAHSFISALPEGYST----KVGERGVQLSGGQKQRV--AIARAVLKNPE 1176
K+ + + +A +T K + + + + +R+ AI + K E
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 1177 ILLLDEATSALDVESERVVQQALQ 1200
L+ + T +++ AL
Sbjct: 558 NLICSKYT--------DLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 8e-06
Identities = 70/540 (12%), Positives = 151/540 (27%), Gaps = 171/540 (31%)
Query: 147 QDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISL 206
+ D + ++S D I++ +S L + Q +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSK----------DAVSGTL--RLFWTLLSKQEEM 78
Query: 207 VTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNV----RTVQAFAGED- 261
V + ++ + Y + L++ ++ + + I Q FA +
Sbjct: 79 VQKFVEEVLRIN---YKF----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 262 ---KAVKVYKEALSNTYK------YGRKAGLAKGLGLGSMHCVLFLSWSLLVWYVSVV-- 310
+ ++AL G G K +W + + V
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDG-VLGSGK-------------TW--VA--LDVCLS 173
Query: 311 --VHKHISNG------GESFTT-----MLNVVIAGLSL-GQAAPDITAFIRAKAAAYPIF 356
V + + ML ++ + + D ++ I+ I
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-----LRIH 228
Query: 357 EMIERDTMSKASSKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKF---CLDIPAGKIV 413
+ S L L +V + ++ F C KI+
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLL------NVQ-------NAKAWNAFNLSC------KIL 269
Query: 414 ------ALVGGSGSGKSTVISLIER---FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVN 464
+ + +T ISL +LL + + D L +++ N
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LPREVLTTN 326
Query: 465 QEP---ALFATTIRENIL-------YGKDDATMEEITRAAKLSEAM-SFISNLP-----E 508
P ++ A +IR+ + D KL+ + S ++ L +
Sbjct: 327 --PRRLSIIAESIRDGLATWDNWKHVNCD-----------KLTTIIESSLNVLEPAEYRK 373
Query: 509 RFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSAL-----DAESENSVQEAL 563
F+ R+++ P+ILL S + ++ V +
Sbjct: 374 MFD----------------RLSVFPPSAHIPTILL-----SLIWFDVIKSDVMVVVNKLH 412
Query: 564 DRVMVGR---TTVVVAHRL-----STIRNADVI--AVVQGRKIVKTGSHEELISNPNSAY 613
+V + + + + + N + ++V I KT ++LI Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-09
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 25/116 (21%)
Query: 498 EAMSFISNLPERFETQVGERGIQ------------------LSGGQKQRI------AISR 533
A + E ++V R + LSGG++ + A+S
Sbjct: 17 LASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSL 76
Query: 534 AIVKNPSILLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRNADVI 588
+ S+L+LDE T LD E + ++R + ++V+H AD +
Sbjct: 77 YLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 5e-09
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 1156 QLSGGQKQRVAIA------RAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK-RTT 1208
LSGG++ + +A + +L+LDE T LD E R + ++R ++K
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 1209 IIVAHRLSTIKNADQI 1224
I+V+H AD +
Sbjct: 117 ILVSHDEELKDAADHV 132
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 2e-08
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 12/132 (9%)
Query: 472 TTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGI-----QLSGGQK 526
RE L + E + + + + V G LSGG++
Sbjct: 195 ALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGER 254
Query: 527 Q------RIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRL 579
R+A+S + S+L+LDE T LD E + ++R + ++V+H
Sbjct: 255 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314
Query: 580 STIRNADVIAVV 591
AD + +
Sbjct: 315 ELKDAADHVIRI 326
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 2e-08
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 1156 QLSGGQKQRV------AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRK-RTT 1208
LSGG++ + A++ + +L+LDE T LD E R + ++R ++K
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 1209 IIVAHRLSTIKNADQISVIE 1228
I+V+H AD + I
Sbjct: 308 ILVSHDEELKDAADHVIRIS 327
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 6e-07
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 453 LKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFET 512
L +R+ G + +RE + E + + + R
Sbjct: 217 LDKVRRIFGRNGFQ-----AYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHA 271
Query: 513 QVGERGI-QLSGGQKQRI------AISRAIVKNPS-ILLLDEATSALDAESENSVQEALD 564
G I LSGG++ + AI+ A++ N ++LDE T LD + E
Sbjct: 272 PNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFR 331
Query: 565 RVMVGRTTVVVAHRLSTIRNADVIAVVQ 592
+V +++ H ADVI V+
Sbjct: 332 KVKSIPQMIIITHHRELEDVADVIINVK 359
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 1156 QLSGGQKQRV------AIARAVLKNP-EILLLDEATSALDVESERVVQQALQRLMRKRTT 1208
LSGG++ V AIA A++ N E ++LDE T LD + + +++
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 1209 IIVAHRLSTIKNADQISVIE 1228
II+ H AD I ++
Sbjct: 340 IIITHHRELEDVADVIINVK 359
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Length = 670 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 62/288 (21%), Positives = 102/288 (35%), Gaps = 101/288 (35%)
Query: 403 FCLDIPAGKIVALVGGSGSGKST-----VISLIERFY---------EPLSGEILLDGNNI 448
++IP GK+V L G SGSGKS+ + + +R Y + L D + I
Sbjct: 37 IDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAI 96
Query: 449 KGLDLKWLRQQIGLVNQEPALFATTI--------RENILYGK-DDATMEEITRAAKLSEA 499
+GL Q + T + + E+T + ++EA
Sbjct: 97 EGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMS-VTEA 155
Query: 500 MSFISN--LPERFETQVGERGIQ-------------------------LSGGQKQRIAIS 532
++F L E+ E Q+ ++ LSGG+ QRI
Sbjct: 156 LAFFDGLELTEK-EAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRI--- 211
Query: 533 R-A------------IVKNPSI---------LLLDEATSALDAESENSVQEALDRVM-VG 569
R A ++ PSI L+ L + +G
Sbjct: 212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI-----------------ATLKSMRDLG 254
Query: 570 RTTVVVAHRLSTIRNADVI------AVVQGRKIVKTGSHEELISNPNS 611
T +VV H T+ AD + A + G ++V G+ EE++++PNS
Sbjct: 255 NTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNS 302
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 5e-04
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 18/122 (14%)
Query: 1145 GYSTKVGERGVQLSGGQKQRVAIARAVLKNPE---ILLLDEATSALDVESERVVQQALQR 1201
GY K+G+ LSGG+ QR+ +A + K + +LDE T L E R + + L R
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 1202 LMRKRTTIIV-AHRLSTIKNADQISVI--------ESGKIIEQGTHSSLVENED---GAY 1249
L+ + T+IV H L IKNAD I I E G I+ GT + +N G +
Sbjct: 854 LVDRGNTVIVIEHNLDVIKNADHI--IDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRF 911
Query: 1250 FK 1251
K
Sbjct: 912 LK 913
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1265 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-101 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-94 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-95 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-90 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-89 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-86 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-87 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-84 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-86 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-80 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-71 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-68 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-55 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-50 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-47 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-44 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-45 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-44 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-45 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-44 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-43 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-43 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 9e-40 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-35 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-39 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-39 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-39 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 8e-37 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-38 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-34 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-38 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-34 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-38 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-38 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-34 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-34 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-34 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-33 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-34 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-33 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-25 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-21 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-10 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-08 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 5e-06 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-06 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 9e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.002 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.002 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 319 bits (818), Expect = e-101
Identities = 134/249 (53%), Positives = 180/249 (72%), Gaps = 2/249 (0%)
Query: 1009 EELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068
+ + +G I++ V F Y E I KD NL + G+++A VG SG GKST+++LI R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 1069 FYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIE 1128
FYD T+G++++DG +IK SLR I LVQQ+ LF+ ++ ENIL G+ A++ EV+E
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 1129 AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
AAK+ANAH FI LP+GY T+VGERGV+LSGGQKQR++IAR L NP IL+LDEATSALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 1189 VESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGA 1248
+ESE ++Q+AL L + RTT+IVAHRLSTI +AD+I VIE+G I+E GTH L+ GA
Sbjct: 187 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGA 245
Query: 1249 YFKLINLQQ 1257
Y L ++Q
Sbjct: 246 YEHLYSIQN 254
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 299 bits (768), Expect = 6e-94
Identities = 128/248 (51%), Positives = 171/248 (68%), Gaps = 2/248 (0%)
Query: 373 RKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432
+ ++ G I+ VSF Y + I L I G+ VA VG SG GKST+I+LI R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 433 FYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITR 492
FY+ SG+IL+DG+NIK LR QIGLV Q+ LF+ T++ENIL G+ AT EE+
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 493 AAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALD 552
AAK++ A FI NLP+ ++T+VGERG++LSGGQKQR++I+R + NP IL+LDEATSALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 553 AESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612
ESE+ +QEALD + RTT++VAHRLSTI +AD I V++ IV+TG+H ELI+ A
Sbjct: 187 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGA 245
Query: 613 YAALVQLQ 620
Y L +Q
Sbjct: 246 YEHLYSIQ 253
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 302 bits (776), Expect = 4e-95
Identities = 123/248 (49%), Positives = 170/248 (68%), Gaps = 3/248 (1%)
Query: 1010 ELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069
+ G +E R V F+YP R EV ++ NLK+ AGK++ALVG+SGSGKST+ SLI RF
Sbjct: 6 VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 64
Query: 1070 YDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGK-DGASEGEVIE 1128
YD G +++DG D++ L SLR +ALV Q LF ++ NI Y + + S ++ E
Sbjct: 65 YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 124
Query: 1129 AAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALD 1188
AA++A A FI+ + G T +GE GV LSGGQ+QR+AIARA+L++ IL+LDEATSALD
Sbjct: 125 AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 184
Query: 1189 VESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGA 1248
ESER +Q AL L + RT++++AHRLSTI+ AD+I V+E G I+E+GTHS L+ G
Sbjct: 185 TESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGV 243
Query: 1249 YFKLINLQ 1256
Y +L +Q
Sbjct: 244 YAQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 290 bits (743), Expect = 2e-90
Identities = 120/250 (48%), Positives = 172/250 (68%), Gaps = 3/250 (1%)
Query: 372 GRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE 431
R +D+ +G +EF++V+F YP R +V L IPAGK VALVG SGSGKST+ SLI
Sbjct: 4 KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 432 RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGK-DDATMEEI 490
RFY+ G IL+DG++++ L LR Q+ LV+Q LF T+ NI Y + ++ + E+I
Sbjct: 63 RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 122
Query: 491 TRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSA 550
AA+++ AM FI+ + +T +GE G+ LSGGQ+QRIAI+RA++++ IL+LDEATSA
Sbjct: 123 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 182
Query: 551 LDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPN 610
LD ESE ++Q ALD + RT++V+AHRLSTI AD I VV+ IV+ G+H EL++ +
Sbjct: 183 LDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-H 241
Query: 611 SAYAALVQLQ 620
YA L ++Q
Sbjct: 242 GVYAQLHKMQ 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 286 bits (734), Expect = 3e-89
Identities = 102/245 (41%), Positives = 156/245 (63%), Gaps = 4/245 (1%)
Query: 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDP 1072
++EG ++ + V F+YP+RP+V++ + +R G+ ALVG +GSGKSTV +L+ Y P
Sbjct: 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 1073 TAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYG-KDGASEGEVIEAAK 1131
T G++++DG + + + L + +A V QEP +F S+ ENI YG + E+ AA
Sbjct: 67 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 126
Query: 1132 LANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVES 1191
+ AHSFIS LP+GY T+V E G QLSGGQ+Q VA+ARA+++ P +L+LD+ATSALD S
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 1192 ERVVQQALQRLMRK--RTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAY 1249
+ V+Q L + R+ +++ LS ++ AD I +E G I E GTH L+E G Y
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245
Query: 1250 FKLIN 1254
+ ++
Sbjct: 246 WAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 279 bits (716), Expect = 1e-86
Identities = 104/245 (42%), Positives = 159/245 (64%), Gaps = 4/245 (1%)
Query: 377 KLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEP 436
L G ++F+DVSF YP+RPDV + + G++ ALVG +GSGKSTV +L++ Y+P
Sbjct: 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 437 LSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAK 495
G++LLDG + + ++L +Q+ V QEP +F +++ENI YG TMEEIT AA
Sbjct: 67 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 126
Query: 496 LSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAES 555
S A SFIS LP+ ++T+V E G QLSGGQ+Q +A++RA+++ P +L+LD+ATSALDA S
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 556 ENSVQEALDRVM--VGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613
+ V++ L R+ +++ LS + AD I ++G I + G+H++L+ Y
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245
Query: 614 AALVQ 618
A+VQ
Sbjct: 246 WAMVQ 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 279 bits (716), Expect = 8e-87
Identities = 117/240 (48%), Positives = 160/240 (66%), Gaps = 1/240 (0%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I R + F Y V++ + NL ++ G+ + +VG+SGSGKST+ LI RFY P G+V
Sbjct: 2 ITFRNIRFRYKPDSPVIL-DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHS 1137
++DG D+ + LR+ + +V Q+ L SI +NI G S +VI AAKLA AH
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1138 FISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQ 1197
FIS L EGY+T VGE+G LSGGQ+QR+AIARA++ NP+IL+ DEATSALD ESE V+ +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1198 ALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQQ 1257
+ ++ + RT II+AHRLST+KNAD+I V+E GKI+EQG H L+ + Y L LQ
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 271 bits (695), Expect = 5e-84
Identities = 113/239 (47%), Positives = 162/239 (67%), Gaps = 1/239 (0%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I F+++ F Y I D L I G+++ +VG SGSGKST+ LI+RFY P +G++
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMS 501
L+DG+++ D WLR+Q+G+V Q+ L +I +NI ++E++ AAKL+ A
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 502 FISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQE 561
FIS L E + T VGE+G LSGGQ+QRIAI+RA+V NP IL+ DEATSALD ESE+ +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 562 ALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
+ ++ GRT +++AHRLST++NAD I V++ KIV+ G H+EL+S P S Y+ L QLQ
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 277 bits (710), Expect = 5e-86
Identities = 108/240 (45%), Positives = 158/240 (65%), Gaps = 4/240 (1%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ R V F+Y ++ +D + + + +A G SG GKST+ SL+ RFY PTAG++
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIE-AAKLANAH 1136
+DG I ++L++ R I V Q+ A+ A +I EN+ YG +G E + LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQ 1196
SF+ +P+ +T+VGERGV++SGGQ+QR+AIARA L+NP+IL+LDEAT++LD ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1197 QALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256
+AL LM+ RTT+++AHRLSTI +AD+I IE G+I G H+ LV Y K ++ Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 261 bits (669), Expect = 2e-80
Identities = 110/240 (45%), Positives = 161/240 (67%), Gaps = 4/240 (1%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ + V F Y + + I+A G SG GKST+ SL+ERFY+P +GEI
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYG-KDDATMEEITRAAKLSEAM 500
+DG I + L+ R QIG V+Q+ A+ A TIREN+ YG + D T E++ + L+ A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
SF+ N+P++ T+VGERG+++SGGQ+QR+AI+RA ++NP IL+LDEAT++LD+ESE+ VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 561 EALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620
+ALD +M GRTT+V+AHRLSTI +AD I ++ +I +G H EL++ + YA V Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 238 bits (608), Expect = 2e-71
Identities = 73/266 (27%), Positives = 124/266 (46%), Gaps = 22/266 (8%)
Query: 993 VFEVLDRKTQVIGDIGEELTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALV 1052
E+L++ Q GD + ++ E + H P + K+ NL + G+ +A+
Sbjct: 16 FGELLEKVQQSNGD--RKHSSDENNVSFS--HLCLVGNP---VLKNINLNIEKGEMLAIT 68
Query: 1053 GQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYE 1112
G +GSGK+++L LIL + + G + G ++ Q + +I E
Sbjct: 69 GSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKE 115
Query: 1113 NILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172
NI++G E K I+ E +T +GE GV LSGGQ+ R+++ARAV
Sbjct: 116 NIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVY 174
Query: 1173 KNPEILLLDEATSALDVES-ERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGK 1231
K+ ++ LLD LDV + E+V + + +LM +T I+V ++ ++ AD+I ++ G
Sbjct: 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGS 234
Query: 1232 IIEQGTHSSLVENEDGAYFKLINLQQ 1257
GT S L KL+
Sbjct: 235 SYFYGTFSELQSLRPDFSSKLMGYDT 260
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 230 bits (587), Expect = 1e-68
Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 20/254 (7%)
Query: 369 SKTGRKLDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVIS 428
S RK ++ F + P + L+I G+++A+ G +GSGK++++
Sbjct: 26 SNGDRKHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEMLAITGSTGSGKTSLLM 80
Query: 429 LIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATME 488
LI E G I G ++ +Q + TI+ENI++G
Sbjct: 81 LILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEY 126
Query: 489 EITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEAT 548
K + I+ E+ T +GE G+ LSGGQ+ RI+++RA+ K+ + LLD
Sbjct: 127 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF 186
Query: 549 SALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELIS 607
LD +E V E+ + ++M +T ++V ++ +R AD I ++ G+ EL S
Sbjct: 187 GYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 246
Query: 608 NPNSAYAALVQLQE 621
+ L+
Sbjct: 247 LRPDFSSKLMGYDT 260
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 190 bits (484), Expect = 2e-55
Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 13/230 (5%)
Query: 1018 IELRGVHFSYPSR-PEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L+ V +Y + K+ NL ++ G+ ++++G SGSGKST+L++I PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1077 VMVDGIDIKRLNLKSLRK----HIALVQQEPALFAT-SIYENILYGKDGASEGEVI--EA 1129
V +D I L+ L K I V Q+ L + EN+ G + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1130 AKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDV 1189
K A ++ L E ++ + QLSGGQ+QRVAIARA+ NP I+L D+ T ALD
Sbjct: 122 RKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1190 ESERVVQQALQRLMRKR--TTIIVAHRLSTIKNADQISVIESGKIIEQGT 1237
++ + Q L++L + T ++V H ++ + ++I ++ G++ +
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 175 bits (445), Expect = 3e-50
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 382 IEFKDVSFCYPSR-PDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I+ K+V+ Y + L+I G+ V+++G SGSGKST++++I +P GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 441 ILLDGNNIKGLD----LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAK 495
+ +D LD K R +IG V Q+ L T EN+ ++ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 496 LSEA--MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDA 553
A ++ L ERF + QLSGGQ+QR+AI+RA+ NP I+L D+ T ALD+
Sbjct: 122 RKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 554 ESENSVQEALDRV--MVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTG 600
++ + + L ++ G+T VVV H ++ R + I ++ ++ +
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 167 bits (425), Expect = 1e-47
Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 28/239 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
++L+ V S + +VRAG+ + LVG +G+GKST+L+ + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPAL-FATSIYENILYGKDGASEGEVIEAAKLANAH 1136
G ++ + L H A + Q+ FAT ++ + + + E++ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 1137 SFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLK-------NPEILLLDEATSALDV 1189
K+G QLSGG+ QRV +A VL+ ++LLLDE ++LDV
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1190 ESERVVQQALQRLMRKRTTII-VAHRLS-TIKNADQISVIESGKIIEQGTHSSLVENED 1246
+ + + L L ++ I+ +H L+ T+++A + +++ GK++ G ++ +
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 157 bits (399), Expect = 4e-44
Identities = 55/239 (23%), Positives = 113/239 (47%), Gaps = 28/239 (11%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ +DV+ ++ AG+I+ LVG +G+GKST+++ + G I
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSI 55
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPAL-FATTIRENILYGKDDATMEEITRAAKLSEAM 500
G ++ L ++Q+ FAT + + + D T E+ + A+
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 115
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK-------NPSILLLDEATSALDA 553
+ ++G QLSGG+ QR+ ++ +++ +LLLDE ++LD
Sbjct: 116 ----------DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 554 ESENSVQEALDRVMV-GRTTVVVAHRLS-TIRNADVIAVVQGRKIVKTGSHEELISNPN 610
++++ + L + G V+ +H L+ T+R+A +++G K++ +G EE+++ PN
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 160 bits (407), Expect = 5e-45
Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 26/237 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
++L + + NL ++ G+ + L+G SG GK+T L +I +PT G++
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYGKD--GASEGE----VIEAA 1130
D+ L ++I++V Q A++ ++YENI + + E V AA
Sbjct: 64 YFGDRDVTYLP--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
+L ++ P QLSGGQ+QRVA+ARA++ P++LL+DE S LD +
Sbjct: 122 ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 1191 SERVVQQALQRL--MRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
++ +++L K TTI V H D+I+V+ G++++ G+ + +
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 159 bits (404), Expect = 1e-44
Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 14/238 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++++ + + +K L I G+ + L+G SG GK+T + +I EP G I
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAM 500
++ L K + I +V Q A++ T+ ENI + + ++ A
Sbjct: 64 YFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ + E QLSGGQ+QR+A++RAIV P +LL+DE S LDA+ +++
Sbjct: 122 ELL-QIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176
Query: 561 EALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ ++ + TT+ V H D IAV+ ++++ GS E+ PNS + A
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 160 bits (405), Expect = 9e-45
Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 25/241 (10%)
Query: 1018 IELRGVHFSYPSRP-EVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076
I+L + + + + +L V AG+ ++G SG+GKST++ + PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1077 VMVDGIDIKRLNLK---SLRKHIALVQQEPALFAT-SIYENILYG------KDGASEGEV 1126
V+VDG ++ L+ R+ I ++ Q L ++ +++ N+ + V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
E L + P LSGGQKQRVAIARA+ NP++LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1187 LDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243
LD + R + + L+ + R T +++ H + +K D ++VI +G++IEQ T S +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1244 N 1244
+
Sbjct: 231 H 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 158 bits (400), Expect = 4e-44
Identities = 68/242 (28%), Positives = 127/242 (52%), Gaps = 13/242 (5%)
Query: 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE 440
I+ +++ + + + L +PAG+I ++G SG+GKST+I + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 441 ILLDGNNIKGLDLKW---LRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKL 496
+L+DG + L R+QIG++ Q L ++ T+ N+ + + ++
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
+E +S + L ++ ++ LSGGQKQR+AI+RA+ NP +LL DEATSALD +
Sbjct: 122 TELLSLV-GLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 557 NSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
S+ E L + +G T +++ H + ++ D +AV+ ++++ + E+ S+P +
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 236
Query: 614 AA 615
A
Sbjct: 237 AQ 238
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 157 bits (399), Expect = 1e-43
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 22/243 (9%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ + +H Y + K +L+ RAG ++++G SGSGKST L I P+ G +
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1078 MVDGIDIKRLN-------------LKSLRKHIALVQQEPALFAT-SIYENILYGKDGASE 1123
+V+G +I + L+ LR + +V Q L++ ++ EN++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1124 GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183
+A + A + + E K LSGGQ+QRV+IARA+ P++LL DE
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPV---HLSGGQQQRVSIARALAMEPDVLLFDEP 176
Query: 1184 TSALDVESERVVQQALQRLMRKRTTII-VAHRLSTIKN-ADQISVIESGKIIEQGTHSSL 1241
TSALD E V + +Q+L + T++ V H + ++ + + + GKI E+G +
Sbjct: 177 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236
Query: 1242 VEN 1244
N
Sbjct: 237 FGN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 157 bits (398), Expect = 1e-43
Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 34/256 (13%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ D+ Y + L AG +++++G SGSGKST + I +P G I
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 442 LLDGNNIKGL-------------DLKWLRQQIGLVNQEPALFAT-TIRENILY------G 481
+++G NI + L+ LR ++ +V Q L++ T+ EN++ G
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 482 KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSI 541
E RA K + + ER + + LSGGQ+QR++I+RA+ P +
Sbjct: 120 LSKHDARE--RALKYLAKV----GIDERAQGKYPV---HLSGGQQQRVSIARALAMEPDV 170
Query: 542 LLLDEATSALDAESENSVQEALDR-VMVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKT 599
LL DE TSALD E V + + G+T VVV H + R+ + + + KI +
Sbjct: 171 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 230
Query: 600 GSHEELISNPNSAYAA 615
G E++ NP S
Sbjct: 231 GDPEQVFGNPQSPRLQ 246
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 145 bits (368), Expect = 9e-40
Identities = 66/233 (28%), Positives = 118/233 (50%), Gaps = 12/233 (5%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E++ +H Y + K +LKV G+ + L+G +G+GK+T LS I GK+
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1078 MVDGIDIKRLNLKSLR-KHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANA 1135
+ +G DI + IALV + +F ++YEN++ G + E I+
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-- 121
Query: 1136 HSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVV 1195
I +L ++ + G LSGG++Q +AI RA++ P++L++DE + L V
Sbjct: 122 ---IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1196 QQALQRLMRKRTTII-VAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246
+ +Q++ ++ TTI+ V A V+E+G+I+ +G S L++NE
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 132 bits (334), Expect = 3e-35
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 12/232 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E + + Y + L +P G+IV L+G +G+GK+T +S I G+I
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 442 LLDGNNIKGLD-LKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEA 499
+ +G +I R I LV + +F T+ EN++ G + +E L
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-GIKRDLEWI 122
Query: 500 MSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
S L ER + G LSGG++Q +AI RA++ P +L++DE + L + V
Sbjct: 123 FSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 560 QEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNP 609
E + ++ G T ++V A V++ +IV G EL+ N
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 143 bits (363), Expect = 3e-39
Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 28/241 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ L V + EV ++ +L+V+ G+ M L+G SG GK+T L +I +P+ G++
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1078 MVDGIDIKRLNLKSLRK----HIALVQQEPALFAT-SIYENILYG------KDGASEGEV 1126
+ + IA+V Q AL+ ++Y+NI + + V
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
E A+L ++ P +LSGGQ+QRVA+ RA+++ P++ L+DE S
Sbjct: 121 REVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 1187 LDVESERVVQQALQRL--MRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243
LD + ++ L++L TTI V H D+I+V+ G + + G+ + +
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
Query: 1244 N 1244
Sbjct: 230 K 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 143 bits (361), Expect = 7e-39
Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ DV + +V + L++ G+ + L+G SG GK+T + +I EP G+I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 442 LLDGNNI----KGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKL 496
+ + KG+ + + I +V Q AL+ T+ +NI + + ++
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 497 SEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESE 556
E + L E + +LSGGQ+QR+A+ RAIV+ P + L+DE S LDA+
Sbjct: 121 REVAELL-GLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 557 NSVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
++ L ++ +G TT+ V H D IAV+ + + GS +E+ P + +
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Query: 614 AA 615
A
Sbjct: 236 VA 237
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 141 bits (358), Expect = 5e-39
Identities = 39/216 (18%), Positives = 96/216 (44%), Gaps = 27/216 (12%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+E+R + Y + + + + + G + G +G GK+T+L I + P G++
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALFA-TSIYENILYG----KDGASEGEVIEAAKL 1132
+ +G+ I ++ + I + +E + S+ + + ++ E+++A +
Sbjct: 59 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1133 ANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESE 1192
++ +LS G +RV +A +L N EI +LD+ A+D +S+
Sbjct: 114 VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 1193 RVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIE 1228
V +++ +++++ +I++ R + D +
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLH 196
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 135 bits (342), Expect = 8e-37
Identities = 41/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+E +D+S Y D + ++ + I G +V G +G GK+T++ I + +PL GEI
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALFA-TTIRENILYGKDDATMEEITRAAKLSEAM 500
+ + G+ + ++ +I + +E + ++ + + +
Sbjct: 59 IYN-----GVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA---------SLYGVKVNK 104
Query: 501 SFISNLPERFE-TQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSV 559
+ I + E E + ++ +LS G +R+ ++ ++ N I +LD+ A+D +S++ V
Sbjct: 105 NEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164
Query: 560 QEALDRVMVGRTTVVVAHRLSTIRNADVIAV 590
+++ ++ + V+++ R + DV
Sbjct: 165 LKSILEILKEKGIVIISSR-EELSYCDVNEN 194
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 141 bits (357), Expect = 2e-38
Identities = 61/239 (25%), Positives = 117/239 (48%), Gaps = 12/239 (5%)
Query: 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075
G + ++ + + I K + ++ G+ L+G +G+GK+T L +I P++G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1076 KVMVDGIDIKRLNLKSLRKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLAN 1134
V V G ++ +RK I+ + +E + E + + G E ++
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVA-GFYASSSSEIEEMVE 115
Query: 1135 AHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERV 1194
+ I+ L E K+ +R S G +++ IARA++ NP + +LDE TS LDV + R
Sbjct: 116 RATEIAGLGE----KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 1195 VQQALQRLMRKRTTII-VAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAYFK 1251
V++ L++ ++ TI+ +H + ++ D+I++I +G I+E GT L E +
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIE 230
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 130 bits (327), Expect = 2e-34
Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSG 439
G + KD+ + I +I G+I L+G +G+GK+T + +I +P SG
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 440 EILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSE 498
+ + G N+ + +R+ I + +E + E + + +
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 499 AMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENS 558
A L E+ + +V S G +++ I+RA++ NP + +LDE TS LD +
Sbjct: 117 ATEIA-GLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 559 VQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613
V++ L + G T +V +H + + D IA++ IV+TG+ EEL +
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 142 bits (358), Expect = 2e-38
Identities = 52/239 (21%), Positives = 98/239 (41%), Gaps = 15/239 (6%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
+ + + E ++ V G ++G +GSGKST++++I F G+V
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1078 MVDGIDIKRLNLKSL-RKHIALVQQEPALFAT-SIYENILYG---KDGASEGEVIEAAKL 1132
+ DI L I Q P ++ EN+L G + + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1133 ANAHSFISALPE-----GYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL 1187
+ + S + +LSGGQ + V I RA++ NP+++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 1188 DVESERVVQQALQRLMRKRTTII-VAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
+ + L K T + + HRL + N D + V+ +G+II +G ++N
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 131 bits (330), Expect = 1e-34
Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 25/245 (10%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
+ +++ + + D + + G + ++G +GSGKST+I++I F + G +
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 442 LLDGNNIKGLDLKWL-RQQIGLVNQEPALFAT-TIRENILYG-------------KDDAT 486
+ +I + L I Q P T+ EN+L G
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDE 546
+E K + + F+ L ++ + G +LSGGQ + + I RA++ NP ++++DE
Sbjct: 122 PKEEEMVEKAFKILEFL-KLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 547 ATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEE 604
+ + + + + + G T +++ HRL + N D + V+ +I+ G EE
Sbjct: 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236
Query: 605 LISNP 609
I N
Sbjct: 237 EIKNV 241
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 140 bits (355), Expect = 3e-38
Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 26/237 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
++L+ V ++ EVV+ KD NL + G+ + VG SG GKST+L +I T+G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALF-ATSIYENILYG------KDGASEGEVIEAA 1130
+ + + + + +V Q AL+ S+ EN+ +G K V + A
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 1131 KLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVE 1190
++ + P+ LSGGQ+QRVAI R ++ P + LLDE S LD
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 1191 SERVVQQALQRL--MRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
++ + RL RT I V H AD+I V+++G++ + G L
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 139 bits (352), Expect = 9e-38
Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
++ ++V+ + +V + LDI G+ V VG SG GKST++ +I SG++
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAM 500
+ + D + +G+V Q AL+ ++ EN+ +G A ++ ++++
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
+ L + + LSGGQ+QR+AI R +V PS+ LLDE S LDA ++
Sbjct: 116 EVL-QLAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 561 EALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
+ R+ +GRT + V H AD I V+ ++ + G EL P + A
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 228
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 130 bits (328), Expect = 1e-34
Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 13/241 (5%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
I K+VS + + V D ++I G+ ++G SG+GK+T + +I P +GE+
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 442 LLDGNNIKGLDLKWLR---QQIGLVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLS 497
D + + ++IG+V Q AL+ T ENI + + M + ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 498 EAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN 557
E + ++ +LSG Q+QR+A++RA+VK+PS+LLLDE S LDA +
Sbjct: 123 EVAKIL-DIHHVLNHFPR----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 558 SVQEALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYA 614
S + + V +G T +VV+H + I AD + V+ K+V+ G E+L NP S
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237
Query: 615 A 615
A
Sbjct: 238 A 238
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 129 bits (324), Expect = 5e-34
Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 27/241 (11%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
I ++ V + + +VV + N+ + G+ ++G SG+GK+T + +I P+ G++
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1078 MVDGIDIKRLNLKSLR---KHIALVQQEPALFAT-SIYENILYG-------KDGASEGEV 1126
D + + + I +V Q AL+ + +ENI + K+ + V
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-RV 121
Query: 1127 IEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSA 1186
E AK+ + H ++ P +LSG Q+QRVA+ARA++K+P +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1187 LDVESERVVQQALQRL--MRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243
LD + ++ + T ++V+H + I AD++ V+ GK+++ G L +
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
Query: 1244 N 1244
N
Sbjct: 231 N 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 128 bits (323), Expect = 7e-34
Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 1036 FKDFNLKV---RAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL 1092
+F L V L+G +G+GKS L LI P G+V ++G DI L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPE 68
Query: 1093 RKHIALVQQEPALFAT-SIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVG 1151
R+ I V Q+ ALF S+Y NI YG E + G + +
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-------GIAHLLD 121
Query: 1152 ERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRL--MRKRTTI 1209
+ +LSGG++QRVA+ARA++ P +LLLDE SA+D++++ V+ + L+ + +
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 1210 IVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAYFKLIN 1254
V H L AD+++V+ +G+I+E+G L ++G + ++
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 125 bits (315), Expect = 9e-33
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 18/226 (7%)
Query: 400 FDKFCLDI---PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL 456
F L++ L+G +G+GKS + LI +P GE+ L+G +I L +
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE-- 68
Query: 457 RQQIGLVNQEPALFAT-TIRENILYGKDDATMEEI-TRAAKLSEAMSFISNLPERFETQV 514
R+ IG V Q+ ALF ++ NI YG + E R +++E + +
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL--------GIAHLL 120
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV--MVGRTT 572
+ +LSGG++QR+A++RA+V P +LLLDE SA+D +++ + E L V
Sbjct: 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180
Query: 573 VVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAALV 617
+ V H L AD +AV+ +IV+ G +EL S N A +
Sbjct: 181 LHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 128 bits (322), Expect = 8e-34
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 18/238 (7%)
Query: 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441
IE + +S + + ++ D L + +G+ ++G +G+GK+ + LI F+ P SG I
Sbjct: 2 IEIESLSRKWK---NFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 442 LLDGNNIKGLDLKWLRQQIGLVNQEPALF-ATTIRENILYGKDDATMEEITRAAKLSEAM 500
LLDG ++ DL + I V Q +LF +++N+ +G +++ R + +
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 501 SFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQ 560
L + LSGG++QR+A++RA+V NP ILLLDE SALD ++ + +
Sbjct: 116 KIEHLL--------DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 561 EALDRV--MVGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615
E L + T + + H + R AD IAVV K+++ G EE+ P A
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 127 bits (321), Expect = 1e-33
Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 24/234 (10%)
Query: 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077
IE+ + + + + +LKV +G+ ++G +G+GK+ L LI F+ P +G++
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1078 MVDGIDIKRLNLKSLRKHIALVQQEPALF-ATSIYENI---LYGKDGASEGEVIEAAKLA 1133
++DG D+ +L + IA V Q +LF ++ +N+ + K V++ A+
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1134 NAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESER 1193
+ P LSGG++QRVA+ARA++ NP+ILLLDE SALD ++
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 1194 VVQQALQRL--MRKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244
++ L L K T + + H + + AD+I+V+ GK+I+ G + E
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 102 bits (255), Expect = 1e-25
Identities = 24/209 (11%), Positives = 54/209 (25%), Gaps = 34/209 (16%)
Query: 1050 ALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATS 1109
+ G+ G GK+T++ I+ A + + ++ + I ++ +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 1110 IYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169
L G G V + + A
Sbjct: 64 FTSKKLVGSYG-----------------------------VNVQYFEELAIPILERAYRE 94
Query: 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIES 1229
A +++++DE + + +I +
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
Query: 1230 GKIIEQGTHSSLVENEDGAYFKLINLQQR 1258
+IE EN D +++L +R
Sbjct: 155 AVLIELTP-----ENRDVILEDILSLLER 178
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 90.0 bits (222), Expect = 3e-21
Identities = 17/190 (8%), Positives = 40/190 (21%), Gaps = 29/190 (15%)
Query: 413 VALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT 472
+ + G G GK+T++ I + + + + I ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 473 TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAIS 532
L G V + + A
Sbjct: 63 FFTSKKLVGS-----------------------------YGVNVQYFEELAIPILERAYR 93
Query: 533 RAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592
A ++++DE + V I +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 593 GRKIVKTGSH 602
G +++
Sbjct: 154 GAVLIELTPE 163
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 3e-08
Identities = 16/170 (9%), Positives = 48/170 (28%), Gaps = 10/170 (5%)
Query: 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALF 1106
+ + L G G GK+T++ + V + R + + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1107 ATSIYENILYGKDGASEGEVIEAAKLANAHSFI-----SALPEGYSTKVGERGVQLSGGQ 1161
+ E ++ V++ + + G V + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIV 1211
+ + R L P ++L + ++ + ++ +
Sbjct: 122 QLFIQAVRQTLSTPGTIIL-----GTIPVPKGKPLALVEEIRNRKDVKVF 166
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 5e-06
Identities = 25/191 (13%), Positives = 56/191 (29%), Gaps = 9/191 (4%)
Query: 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF 470
+ V L G G GK+T+I + + + + + ++
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 471 ATTIRENILYGKDDATMEEITRAAKLSEAMSFI-----SNLPERFETQVGERGIQLSGGQ 525
+ E ++ + + + + + V + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 526 KQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNA 585
+ I R + P ++L V+E +R V V +R +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPL-ALVEEIRNRKDVKVFNVTKENRNHLLP-- 178
Query: 586 DVIAVVQ-GRK 595
D++ VQ RK
Sbjct: 179 DIVTCVQSSRK 189
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 41/318 (12%), Positives = 96/318 (30%), Gaps = 3/318 (0%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWD-TTQREVKKITILF 744
+ V+P I II L L + A+ + TT +V +TI
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 745 CCAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLE 804
A I VIV + + + ++ + + ++ ++ +
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123
Query: 805 SDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITL--VVVATYPLIISGHISEKL 862
+ +T + ++ +T ++ + + L + +P I
Sbjct: 124 VINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFG 183
Query: 863 FFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922
+ S+A + E V I V +F ED + + ++ R+ +
Sbjct: 184 RLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRW 243
Query: 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPD 982
+ + + G+ L + ++ L + + +A
Sbjct: 244 NAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303
Query: 983 LLKGNQMAASVFEVLDRK 1000
L + VF+++D
Sbjct: 304 LTQSFASMDRVFQLIDED 321
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 43.7 bits (101), Expect = 9e-05
Identities = 38/320 (11%), Positives = 96/320 (30%), Gaps = 4/320 (1%)
Query: 45 KLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLIN--IIGLAYLFPKTASHKVAK 102
+ F Y + I + + + I+ I A + H
Sbjct: 4 RYLQFVKPY-KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVI 162
+ + +I +T + +R + + +
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS 122
Query: 163 SAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222
+ +D+ +D + + N + I F +++L L I P L ++
Sbjct: 123 R-VINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282
L ++ + E + + V++FA ED K + + +N K
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDI 342
+++ V + +++ + + G + + + L +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 343 TAFIRAKAAAYPIFEMIERD 362
T ++ A+ +F++I+ D
Sbjct: 302 TTLTQSFASMDRVFQLIDED 321
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 37/317 (11%), Positives = 113/317 (35%), Gaps = 4/317 (1%)
Query: 686 KLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFC 745
+L+ + P + I I+ A + L + D + + + ++
Sbjct: 6 RLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV--LLWMPLVVI 63
Query: 746 CAAVITVIVHAIEHLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLES 805
++ I I + ++ + +R ++F ++ + +FD+ + + SR+
Sbjct: 64 GLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLL--SRITY 121
Query: 806 DATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRITLVVVATYPLIISGHISEKLFFQ 865
D+ + + +++ + F++ F +W++++++V P++ F+
Sbjct: 122 DSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFR 181
Query: 866 GYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQIAGI 925
N+ + A + + + V F ++ + + + + + + I
Sbjct: 182 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSI 241
Query: 926 FYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLK 985
I Q + L+ S + + ++ F +I + + +
Sbjct: 242 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 301
Query: 986 GNQMAASVFEVLDRKTQ 1002
G ++F +LD + +
Sbjct: 302 GMAACQTLFAILDSEQE 318
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 46.1 bits (107), Expect = 2e-05
Identities = 45/320 (14%), Positives = 115/320 (35%), Gaps = 7/320 (2%)
Query: 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAK 102
+L+ + + + I ++ S L++ F KT +
Sbjct: 4 FRRLWPTIAPF-KAGLIVAGIALILNAASDTFMLSLLKPLLDDG-----FGKTDRSVLLW 57
Query: 103 YSLDFVYLSVAILFSSWIEVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVI 162
L + L + +S+I C + + MR M+ ++ FD +++ +
Sbjct: 58 MPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS 117
Query: 163 SAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARVWQISLVTLSIVPLIALAGGMY 222
V + + + + +G FI+ F WQ+S++ + + P++++A +
Sbjct: 118 RITYDSEQVASSSSGALI-TVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVV 176
Query: 223 AYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKAG 282
+ + ++ + + AE+++ + V F G++ K + + + G K
Sbjct: 177 SKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236
Query: 283 LAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDI 342
A + + + L+ + +++ S G +++ L
Sbjct: 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 296
Query: 343 TAFIRAKAAAYPIFEMIERD 362
F R AA +F +++ +
Sbjct: 297 AQFQRGMAACQTLFAILDSE 316
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 0.001
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 1158 SGGQKQRVAI----ARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVA- 1212
SGG+K A+ A + +LDE +ALD+ + + + ++R IV
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
Query: 1213 HRLSTIKNADQISVIESGKIIEQGTHSSLV 1242
+ + + +D + + +Q S ++
Sbjct: 394 LKNTMFEKSDALVGVY---RQQQENSSKII 420
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.0 bits (87), Expect = 0.002
Identities = 24/176 (13%), Positives = 49/176 (27%), Gaps = 20/176 (11%)
Query: 409 AGKIVALVGGSGSGKSTVISLIER----FYEPLSGEILLDGNNIKGLDL----------K 454
G I+ L G GSGKST+ + + L +D
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRM 62
Query: 455 WLRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQV 514
++ + + I + ++ + R + + ER +
Sbjct: 63 IMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR- 121
Query: 515 GERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVMVGR 570
+ A + +L S D + ++Q A++ + GR
Sbjct: 122 -GGDSLSDPLVVADLHSQFADLGAFEHHVLP--VSGKDT--DQALQSAINALQSGR 172
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.0 bits (87), Expect = 0.002
Identities = 29/179 (16%), Positives = 49/179 (27%), Gaps = 20/179 (11%)
Query: 1045 AGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI-KRLNLKSLRKHIALVQQEP 1103
G + L G GSGKST+ + V D+ + + + Q+
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVPK--VHFHSDDLWGYIKHGRIDPWLPQSHQQN 60
Query: 1104 ALFATSIYE-----------NILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGE 1152
+ + IL G A + + + +
Sbjct: 61 RMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLD 120
Query: 1153 RGV--QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTI 1209
RG + A L E +L S D ++ +Q A+ L R I
Sbjct: 121 RGGDSLSDPLVVADLHSQFADLGAFEHHVLP--VSGKDT--DQALQSAINALQSGRFRI 175
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1265 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.97 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.95 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.72 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.54 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.49 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.43 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.34 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.27 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.22 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.13 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.94 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.9 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.72 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.89 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.88 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.75 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.56 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.5 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.49 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.45 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.2 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.05 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.03 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.99 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.96 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.95 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.89 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.89 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.88 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.86 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.66 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.62 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.6 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.58 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.54 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.54 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.4 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.38 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.32 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.28 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.28 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.28 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.24 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.07 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.0 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.97 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.92 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.91 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.87 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.85 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.78 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.76 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.76 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.74 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.69 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.68 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.67 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.62 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.52 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.47 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.46 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.46 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.37 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.34 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.3 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 94.25 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.19 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.16 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.13 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.09 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.99 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.91 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.91 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.91 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.89 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.87 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.86 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.84 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.84 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.8 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.77 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.76 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.72 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.62 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.61 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.6 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.58 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.56 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.55 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.54 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.52 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.51 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.46 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.4 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.37 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.33 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.3 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.24 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.24 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.21 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.18 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.18 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.1 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.08 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.07 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.05 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.03 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.02 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.92 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.92 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.9 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.86 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.8 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.76 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.74 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.7 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.68 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.62 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.6 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.55 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.52 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.44 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.41 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.36 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.33 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.25 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.21 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.13 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.12 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.06 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.05 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.99 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.97 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.96 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.93 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.92 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.92 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.82 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.73 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.72 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.69 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.68 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.66 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.59 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.56 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.55 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.52 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.5 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.46 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.42 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.4 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 91.33 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.31 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.27 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 91.22 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.22 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.19 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.18 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.14 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.14 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.11 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.07 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 91.05 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.02 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.89 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.84 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.83 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.71 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.69 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.67 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.64 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.62 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.62 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.6 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.6 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.59 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.56 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.55 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.52 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.46 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 90.41 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.35 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.34 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.33 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.17 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.15 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.12 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 90.11 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.08 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.08 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.06 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.06 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.06 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 90.05 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.05 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 90.04 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.04 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.03 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.0 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 89.97 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.95 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.94 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.93 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.88 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 89.88 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.75 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.68 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.65 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.64 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.61 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.57 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.56 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.47 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.43 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.41 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 89.4 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.29 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.24 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.15 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.09 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.09 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.07 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.04 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.92 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.81 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 88.8 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.8 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.78 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.74 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.74 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.72 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.68 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.68 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.63 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.54 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.54 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.54 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.46 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.45 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.42 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.42 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.41 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.41 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.37 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.32 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.27 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 88.27 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.26 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.25 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.24 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.21 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.19 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.1 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 88.04 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.03 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 87.97 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.94 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.84 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.83 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.78 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 87.76 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 87.75 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.68 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 87.59 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.56 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.48 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.41 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.37 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.32 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.26 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 87.18 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.17 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.15 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.15 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.15 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.1 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.05 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.03 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 86.95 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.89 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.76 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.76 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.75 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.73 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.68 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.63 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 86.55 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.54 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.51 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.49 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 86.43 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 86.34 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 86.33 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.22 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 86.12 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.09 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.09 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 86.05 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.01 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.96 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.78 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.76 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.72 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 85.71 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.68 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.65 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.61 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 85.57 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.55 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 85.54 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.51 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.43 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.43 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.36 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.3 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 85.21 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.2 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.18 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 85.17 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.14 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.13 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 85.13 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.03 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.88 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.86 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 84.81 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.71 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.65 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.57 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 84.55 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 84.54 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 84.51 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 84.39 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.35 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.31 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 84.3 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 84.24 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.16 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 84.16 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.14 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 84.13 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 84.1 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.09 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 84.08 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 84.07 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 83.84 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 83.67 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.66 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 83.52 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 83.48 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.45 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.34 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.09 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.07 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 82.96 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 82.8 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 82.78 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 82.64 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 82.54 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 82.51 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.5 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.5 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.48 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 82.41 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 82.4 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.37 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.95 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 81.93 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.91 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.84 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.82 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 81.8 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 81.68 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 81.46 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 81.46 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 81.4 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 81.3 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.1 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 81.05 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 81.04 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.04 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 81.0 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 80.95 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 80.94 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 80.87 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.57 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 80.26 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=524.75 Aligned_cols=245 Identities=55% Similarity=0.863 Sum_probs=235.5
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
Q ss_conf 67876618999688989999984321010599848959999849999857899998336879973799989506899978
Q 000830 1011 LTNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLK 1090 (1265)
Q Consensus 1011 ~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~ 1090 (1265)
.....|.|+|+||+|+|++. ..++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|.+||.|+++++.+
T Consensus 10 l~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 77778879999889995999-97606443899839989999889998099999999712786300015399875307888
Q ss_pred HHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 77243289814788882338899603999999889999999941388898187876641269889899359999999998
Q 000830 1091 SLRKHIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1091 ~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARA 1170 (1265)
++|++++||||+|.+|++||+|||.++.+..+++++++|++.+++++++..+|+||||.++++|.+||||||||+|||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 86341456510156899879999851586799999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 61499888872676899989899999999998089659999249114420287999949889893393456202880799
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYF 1250 (1265)
Q Consensus 1171 Ll~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl~~~~g~y~ 1250 (1265)
++++|+|||||||||+||++|+..|.+.|++..+++|+|+||||++.+..||+|++|++|+|++.|+|+||++ .++.|+
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~-~~~~y~ 247 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYE 247 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH-TTSHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHHH
T ss_conf 8559989998376544797799999999998753888999968999998599999998999999889999986-884999
Q ss_pred HHHHHHH
Q ss_conf 9999861
Q 000830 1251 KLINLQQ 1257 (1265)
Q Consensus 1251 ~l~~~~~ 1257 (1265)
+||+.|.
T Consensus 248 ~l~~~Q~ 254 (255)
T d2hyda1 248 HLYSIQN 254 (255)
T ss_dssp HHHTTTT
T ss_pred HHHHHCC
T ss_conf 9999747
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=519.64 Aligned_cols=241 Identities=49% Similarity=0.773 Sum_probs=232.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 18999688989999984321010599848959999849999857899998336879973799989506899978772432
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
+|+|+||+|+|++. .+++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|++||+|+++++.+++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 89814788882338899603999999889999999941388898187876641269889899359999999998614998
Q 000830 1097 ALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPE 1176 (1265)
Q Consensus 1097 ~~VpQd~~LF~gTIreNl~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ 1176 (1265)
+||||+|++|++||+|||.++.+..++++++.+++.+++.+++..+|+|++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
Q ss_conf 88872676899989899999999998089659999249114420287999949889893393456202880799999986
Q 000830 1177 ILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256 (1265)
Q Consensus 1177 ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~ 1256 (1265)
|||||||||+||+.+++.|.+.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++.++.|++||+.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829987899999981
Q ss_pred HC
Q ss_conf 11
Q 000830 1257 QR 1258 (1265)
Q Consensus 1257 ~~ 1258 (1265)
.+
T Consensus 240 ~d 241 (241)
T d2pmka1 240 SD 241 (241)
T ss_dssp CC
T ss_pred CC
T ss_conf 39
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=512.65 Aligned_cols=244 Identities=50% Similarity=0.811 Sum_probs=233.5
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf 78766189996889899999843210105998489599998499998578999983368799737999895068999787
Q 000830 1012 TNVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS 1091 (1265)
Q Consensus 1012 ~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~ 1091 (1265)
....|.|+|+||+|+|+++ ..++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+.
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 7783079999889992999-976353328998599999999999985999999986216888468987880121110665
Q ss_pred HHCCCEEEECCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7243289814788882338899603999-999889999999941388898187876641269889899359999999998
Q 000830 1092 LRKHIALVQQEPALFATSIYENILYGKD-GASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1092 lR~~i~~VpQd~~LF~gTIreNl~~g~~-~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARA 1170 (1265)
+|++++||||+|.+|++|+++|+.++.+ ..+++++++|++.+++.++++.+|+||||.++++|.+||||||||||||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 42068799502544786202433205722089999999999981799997355441014348889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 61499888872676899989899999999998089659999249114420287999949889893393456202880799
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYF 1250 (1265)
Q Consensus 1171 Ll~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl~~~~g~y~ 1250 (1265)
|+++|+|||||||||+||++++..|++.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|+||++ .++.|+
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~-~~~~y~ 245 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYA 245 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH-HTSSHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHHH
T ss_conf 9549988995164445898899999999987522788999988799998599999998999999889999986-893999
Q ss_pred HHHHHHH
Q ss_conf 9999861
Q 000830 1251 KLINLQQ 1257 (1265)
Q Consensus 1251 ~l~~~~~ 1257 (1265)
+||+.|.
T Consensus 246 ~l~~~Q~ 252 (253)
T d3b60a1 246 QLHKMQF 252 (253)
T ss_dssp HHHHHTC
T ss_pred HHHHHCC
T ss_conf 9999725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=506.09 Aligned_cols=241 Identities=42% Similarity=0.748 Sum_probs=229.6
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf 87661899968898999998432101059984895999984999985789999833687997379998950689997877
Q 000830 1013 NVEGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL 1092 (1265)
Q Consensus 1013 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l 1092 (1265)
+.+|.|+|+||+|+||++++.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|++||+|+++++.+.+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCCEEEECCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 24328981478888233889960399-99998899999999413888981878766412698898993599999999986
Q 000830 1093 RKHIALVQQEPALFATSIYENILYGK-DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV 1171 (1265)
Q Consensus 1093 R~~i~~VpQd~~LF~gTIreNl~~g~-~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARAL 1171 (1265)
|++++||||+|++|++|++||+.++. +..+++++.++++.+++.++++.+|+|+++.++++|.+||||||||+|||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 149988887267689998989999999999808--965999924911442028799994988989339345620288079
Q 000830 1172 LKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAY 1249 (1265)
Q Consensus 1172 l~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~--~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl~~~~g~y 1249 (1265)
+++|+|+|||||||+||+.++..|++.|++..+ ++|+|+||||++++..||||+||++|+|+|.|+|+||++ .++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~-~~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HTSHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHH
T ss_conf 56870787167576568536899999999976506989999959799998599999998999999889999985-97588
Q ss_pred HHHHH
Q ss_conf 99999
Q 000830 1250 FKLIN 1254 (1265)
Q Consensus 1250 ~~l~~ 1254 (1265)
++||+
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=504.59 Aligned_cols=237 Identities=45% Similarity=0.743 Sum_probs=227.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 89996889899999843210105998489599998499998578999983368799737999895068999787724328
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++||+|+|++. +++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|++||.|+++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EEECCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 981478888233889960399-9999889999999941388898187876641269889899359999999998614998
Q 000830 1098 LVQQEPALFATSIYENILYGK-DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPE 1176 (1265)
Q Consensus 1098 ~VpQd~~LF~gTIreNl~~g~-~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ 1176 (1265)
||||+|.+|++|++||+.++. +..++++++++++.+++.+++..+|+|++|.++++|.+||||||||+||||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
Q ss_conf 88872676899989899999999998089659999249114420287999949889893393456202880799999986
Q 000830 1177 ILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLINLQ 1256 (1265)
Q Consensus 1177 ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~~~~ 1256 (1265)
|||||||||+||+.++..|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|+||++ .++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~-~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH-HCHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCHHHHHHHHHH
T ss_conf 9996588655698899999887888717998999978799998499999998999999999999986-896999999998
Q ss_pred H
Q ss_conf 1
Q 000830 1257 Q 1257 (1265)
Q Consensus 1257 ~ 1257 (1265)
.
T Consensus 239 ~ 239 (242)
T d1mv5a_ 239 L 239 (242)
T ss_dssp C
T ss_pred H
T ss_conf 5
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=471.04 Aligned_cols=239 Identities=47% Similarity=0.775 Sum_probs=230.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 28999579987999997541223599529979999839999489999999713579853699899417999968885410
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
+|+|+||+|+|++. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.|+..++..++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 68846776540238998604999999999999999912899996196542110039999899679999999998613998
Q 000830 461 GLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1265)
Q Consensus 461 ~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ 540 (1265)
+||+|+|++|++||+|||.++.+..+++++..+++.+++.+++..+|+|++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEEEECCCHHCCCCCHHHHHHHHHH
Q ss_conf 88982767899989899999999987089759998369135430498999959889986073011059955899999999
Q 000830 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1265)
Q Consensus 541 ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1265)
|+|||||||+||+.++..+++.+.++.+++|+|+|||+++.++.||+|++|++|+|++.|+|+++++++++.|+.+++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829987899999981
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=474.65 Aligned_cols=243 Identities=53% Similarity=0.803 Sum_probs=232.0
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 88765289995799879999975412235995299799998399994899999997135798536998994179999688
Q 000830 376 DKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455 (1265)
Q Consensus 376 ~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 455 (1265)
....|.|+++||+|+|+++ ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.|+++++..+
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHH
T ss_conf 7778879999889995999-976064438998399899998899980999999997127863000153998753078888
Q ss_pred HHHHEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 85410688467765402389986049999999999999999128999961965421100399998996799999999986
Q 000830 456 LRQQIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 456 ~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal 535 (1265)
+|++++||+|+|++|++||+|||++|.+..+++++.++++.+++++++..+|+|++|.++++|.+||||||||++||||+
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 63414565101568998799998515867999999999999697999973624201033388898499999999999998
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEEEECCCHHCCCCCHHHHH
Q ss_conf 13998889827678999898999999999870897599983691354304989999598899860730110599558999
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAA 615 (1265)
Q Consensus 536 ~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 615 (1265)
+++|+|+|||||||+||++++..+++.+..+.+++|+|+||||++.++.||+|++|++|+|++.|+|+||+++ ++.|+.
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~ 248 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEH 248 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHH
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHH
T ss_conf 5599899983765447977999999999987538889999689999985999999989999998899999868-849999
Q ss_pred HHHHH
Q ss_conf 99999
Q 000830 616 LVQLQ 620 (1265)
Q Consensus 616 ~~~~~ 620 (1265)
++..|
T Consensus 249 l~~~Q 253 (255)
T d2hyda1 249 LYSIQ 253 (255)
T ss_dssp HHTTT
T ss_pred HHHHC
T ss_conf 99974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=464.81 Aligned_cols=244 Identities=49% Similarity=0.798 Sum_probs=231.3
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHH
Q ss_conf 78876528999579987999997541223599529979999839999489999999713579853699899417999968
Q 000830 375 LDKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLK 454 (1265)
Q Consensus 375 ~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 454 (1265)
.+...|.|+|+||+|+|+++ +.++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+||.|+..++..
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CCCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 67783079999889992999-97635332899859999999999998599999998621688846898788012111066
Q ss_pred HHHHHEEEECCCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88541068846776540238998604999-99999999999991289999619654211003999989967999999999
Q 000830 455 WLRQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISR 533 (1265)
Q Consensus 455 ~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialAR 533 (1265)
++|++++||+|+|++|++|+++|+.++.+ ..+++++.++++.+++.+++..+|+|++|.++++|.+||||||||++|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 54206879950254478620243320572208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEEEECCCHHCCCCCHHH
Q ss_conf 86139988898276789998989999999998708975999836913543049899995988998607301105995589
Q 000830 534 AIVKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1265)
Q Consensus 534 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1265)
|++++|+|+|||||||+||+.++..+++.|.++.+++|+|+|||+++.+..||+|++|++|+|+++|+|++++++ ++.|
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y 244 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVY 244 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 995499889951644458988999999999875227889999887999985999999989999998899999868-9399
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 000830 614 AALVQLQ 620 (1265)
Q Consensus 614 ~~~~~~~ 620 (1265)
+++++.|
T Consensus 245 ~~l~~~Q 251 (253)
T d3b60a1 245 AQLHKMQ 251 (253)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
T ss_conf 9999972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=460.72 Aligned_cols=242 Identities=43% Similarity=0.742 Sum_probs=227.5
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 88765289995799879999975412235995299799998399994899999997135798536998994179999688
Q 000830 376 DKLSGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW 455 (1265)
Q Consensus 376 ~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 455 (1265)
...+|.|+|+||+|+||++++..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+++.++
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred HHHHEEEECCCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8541068846776540238998604999-999999999999912899996196542110039999899679999999998
Q 000830 456 LRQQIGLVNQEPALFATTIRENILYGKD-DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 456 ~r~~i~~v~Q~~~l~~~ti~eNi~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARa 534 (1265)
+|++++||+|+|++|++||+||+.+|.. .....++..+++.+.+.+++..+|+|++|.++++|.+||||||||++||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHCCCEEEEEECCEEEEEECCCHHCCCCCHH
Q ss_conf 6139988898276789998989999999998708--97599983691354304989999598899860730110599558
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1265)
Q Consensus 535 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1265)
++++|+|+|||||||+||+.++..+++.+.++.+ ++|+|+|||+++.++.||+|++|++|+|+++|+|+||+++ ++.
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~ 244 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 244 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCH
T ss_conf 4568707871675765685368999999999765069899999597999985999999989999998899999859-758
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000830 613 YAALVQ 618 (1265)
Q Consensus 613 ~~~~~~ 618 (1265)
|+.|++
T Consensus 245 y~~l~~ 250 (251)
T d1jj7a_ 245 YWAMVQ 250 (251)
T ss_dssp HHHHHC
T ss_pred HHHHHC
T ss_conf 899962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=455.72 Aligned_cols=236 Identities=47% Similarity=0.771 Sum_probs=223.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89995799879999975412235995299799998399994899999997135798536998994179999688854106
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++||+|+|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.|+.+++.+++|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 884677654023899860499-9999999999999912899996196542110039999899679999999998613998
Q 000830 462 LVNQEPALFATTIRENILYGK-DDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1265)
Q Consensus 462 ~v~Q~~~l~~~ti~eNi~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ 540 (1265)
||+|+|++|++|++||+.++. +...+++++.+++.+.+.+++..+|++++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEEEECCCHHCCCCCHHHHHHHHHH
Q ss_conf 88982767899989899999999987089759998369135430498999959889986073011059955899999999
Q 000830 541 ILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAALVQLQ 620 (1265)
Q Consensus 541 ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 620 (1265)
|+|||||||+||+.++..+++.++++.+++|+|+|||+++.+..||+|++|++|+|+++|+|+||+++ ++.|+.++..|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868-96999999998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=421.64 Aligned_cols=222 Identities=29% Similarity=0.453 Sum_probs=201.4
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC
Q ss_conf 66189996889899999843210105998489599998499998578999983368799737999895068999787724
Q 000830 1015 EGTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK 1094 (1265)
Q Consensus 1015 ~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 1094 (1265)
.+.|+|+|++|. +.|+|+|+||+|++||++||+||||||||||+++|+|+++|++|.|.+||
T Consensus 36 ~~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf 896799976989-----97677375999859999999989998299999999579747882899999-------------
Q ss_pred CCEEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 32898147888823388996039999998899999999413888981878766412698898993599999999986149
Q 000830 1095 HIALVQQEPALFATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN 1174 (1265)
Q Consensus 1095 ~i~~VpQd~~LF~gTIreNl~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~ 1174 (1265)
+++|+||++.+|++|++||+.++. ..++.+.+.+++.+.+.+++..+|+++++.++++|.+||||||||++|||||+++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999981643026760321420333-4560579999999776999984612332355554237799999999999999869
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf 988887267689998989999999-9998089659999249114420287999949889893393456202880799999
Q 000830 1175 PEILLLDEATSALDVESERVVQQA-LQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTHSSLVENEDGAYFKLI 1253 (1265)
Q Consensus 1175 p~ILiLDEaTSaLD~~te~~i~~~-L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~~eLl~~~~g~y~~l~ 1253 (1265)
|+|||||||||+||+.++..+.+. +....+++|+|+||||++.++.||||++|++|+|++.|+|+||++ ..+.|.+.+
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~-~~~~~~~~~ 255 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS-LRPDFSSKL 255 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HCHHHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHC-CCCHHHHHH
T ss_conf 6351333855448989999999999988628999999925289998599999998999999878999960-594899987
Q ss_pred HHH
Q ss_conf 986
Q 000830 1254 NLQ 1256 (1265)
Q Consensus 1254 ~~~ 1256 (1265)
...
T Consensus 256 ~~~ 258 (281)
T d1r0wa_ 256 MGY 258 (281)
T ss_dssp HTS
T ss_pred CCC
T ss_conf 298
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=375.06 Aligned_cols=219 Identities=30% Similarity=0.515 Sum_probs=190.4
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 18999688989999984321010599848959999849999857899998336879973799989506899978772432
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++|++++|+ +..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|.+||.|++..+.. |+++
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEEECCCCCCC-CCHHHHHCCCCC--CCCHHH----HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89814788882-338899603999--999889----99999994138889818787664126988989935999999999
Q 000830 1097 ALVQQEPALFA-TSIYENILYGKD--GASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIAR 1169 (1265)
Q Consensus 1097 ~~VpQd~~LF~-gTIreNl~~g~~--~~~dee----i~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialAR 1169 (1265)
+||||++.+|+ -|++||+.++.. ..+.++ +.++++.+++.++ .......||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHHH
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHH
T ss_conf 9980033534222099999999987399999999999999987598556-----------60995469999988999976
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 8614998888726768999898999999999980-8-9659999249114420-28799994988989339345620288
Q 000830 1170 AVLKNPEILLLDEATSALDVESERVVQQALQRLM-R-KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246 (1265)
Q Consensus 1170 ALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~-~-~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt~~eLl~~~~ 1246 (1265)
||+.+|+||+||||||+||+.+...+++.|++.. + ++|+|+|||+++.+.. ||||++|++|+|++.|+|+|+.+++.
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 229 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 64049982430688666898999899999999987319807999489999998699999998999999859999986899
Q ss_pred CHHHH
Q ss_conf 07999
Q 000830 1247 GAYFK 1251 (1265)
Q Consensus 1247 g~y~~ 1251 (1265)
..|-+
T Consensus 230 ~~~~~ 234 (239)
T d1v43a3 230 SVFVA 234 (239)
T ss_dssp BHHHH
T ss_pred CHHHH
T ss_conf 98999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=385.78 Aligned_cols=218 Identities=27% Similarity=0.455 Sum_probs=195.0
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 65289995799879999975412235995299799998399994899999997135798536998994179999688854
Q 000830 379 SGHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQ 458 (1265)
Q Consensus 379 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 458 (1265)
...|.|++++|. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf 896799976989-----97677375999859999999989998299999999579747882899999-------------
Q ss_pred HEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 10688467765402389986049999999999999999128999961965421100399998996799999999986139
Q 000830 459 QIGLVNQEPALFATTIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKN 538 (1265)
Q Consensus 459 ~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~ 538 (1265)
+++|++|+|++|++||+||+.++.. ....+...+++.+.+.+++..+|+++++.++++|.+||||||||++|||||+++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999816430267603214203334-560579999999776999984612332355554237799999999999999869
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEEEECCCHHCCCCCHHHHHH
Q ss_conf 988898276789998989999999-998708975999836913543049899995988998607301105995589999
Q 000830 539 PSILLLDEATSALDAESENSVQEA-LDRVMVGRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1265)
Q Consensus 539 ~~ililDe~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1265)
|+|+|||||||+||+.++..+++. +....+++|+|+|||+++.++.||+|++|++|++++.|+|+|+++. .+.|...
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~ 254 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSK 254 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHH
T ss_conf 63513338554489899999999999886289999999252899985999999989999998789999605-9489998
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=380.76 Aligned_cols=216 Identities=31% Similarity=0.535 Sum_probs=190.7
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 89996889899999843210105998489599998499998578999983368799737999895068999787724328
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++||+++|++ .+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+++++.. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EEECCCCCCCC-CHHHHHCCCC---CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 98147888823-3889960399---9999889999999941388898187876641269889899359999999998614
Q 000830 1098 LVQQEPALFAT-SIYENILYGK---DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLK 1173 (1265)
Q Consensus 1098 ~VpQd~~LF~g-TIreNl~~g~---~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~ 1173 (1265)
+|||++.+|+. |++||+.++. ....++++.++++.+++.++.+. ....||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHC-----------CHHHCCHHHHCCHHHHHHHHC
T ss_conf 151211117466577888887764055389999999998256555758-----------955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf 998888726768999898999999999980--89659999249114420-287999949889893393456202880799
Q 000830 1174 NPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAYF 1250 (1265)
Q Consensus 1174 ~p~ILiLDEaTSaLD~~te~~i~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt~~eLl~~~~g~y~ 1250 (1265)
+|++|+||||||+||+.+...+++.|++.. .+.|+|+|||+++.+.. ||||++|.+|++++.|+|+|+++++...|-
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~v 224 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 67714434787679989999999999999864796899974999999996999999979999998699999868998799
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=381.17 Aligned_cols=217 Identities=31% Similarity=0.478 Sum_probs=191.3
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 89996889899999843210105998489599998499998578999983368799737999895068999787724328
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
|+++||+++|. +..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|+++|.++.+.+. .|++|+
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEE
T ss_conf 99999999989---9999811177886998999998999829999999965878888889999997788864--443222
Q ss_pred EEECCCCCCCC-CHHHHHCCCCCC--CC----HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98147888823-388996039999--99----889999999941388898187876641269889899359999999998
Q 000830 1098 LVQQEPALFAT-SIYENILYGKDG--AS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARA 1170 (1265)
Q Consensus 1098 ~VpQd~~LF~g-TIreNl~~g~~~--~~----deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARA 1170 (1265)
||||++.+|+. |++||+.++... .+ ++.+.++++.+++.++.+..| ..||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHH
T ss_conf 34334202643337889789998759988999999999997578865664896-----------5699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 614998888726768999898999999999980--89659999249114420-287999949889893393456202880
Q 000830 1171 VLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDG 1247 (1265)
Q Consensus 1171 Ll~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt~~eLl~~~~g 1247 (1265)
|+.+|++|+|||||++||+.+...+++.|++.. .++|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++++..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738999
Q ss_pred HHH
Q ss_conf 799
Q 000830 1248 AYF 1250 (1265)
Q Consensus 1248 ~y~ 1250 (1265)
.|-
T Consensus 225 ~~v 227 (232)
T d2awna2 225 RFV 227 (232)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=381.41 Aligned_cols=222 Identities=28% Similarity=0.462 Sum_probs=192.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHHHH
Q ss_conf 189996889899999843210105998489599998499998578999983368799737999895068999---78772
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN---LKSLR 1093 (1265)
Q Consensus 1017 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~lR 1093 (1265)
.|+++||+++|+.. +..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|.+||.|+...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCCEEEECCCCCCCC-CHHHHHCCCCC--CCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 432898147888823-38899603999--9998----8999999994138889818787664126988989935999999
Q 000830 1094 KHIALVQQEPALFAT-SIYENILYGKD--GASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1094 ~~i~~VpQd~~LF~g-TIreNl~~g~~--~~~d----eei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQria 1166 (1265)
+++++|||++.||+. |++||+.++.. ..+. +.+.++++.+++.++.+.. ...||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-----------PRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCC-----------HHHCCHHHHHHHH
T ss_conf 45147730433466665777766556761379999999999998665917666489-----------5459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99986149988887267689998989999999999808--9659999249114420-28799994988989339345620
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 lARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt~~eLl~ 1243 (1265)
|||||+.+|++|+||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CCCCHHH
Q ss_conf 2880799
Q 000830 1244 NEDGAYF 1250 (1265)
Q Consensus 1244 ~~~g~y~ 1250 (1265)
++...|-
T Consensus 231 ~P~~~~~ 237 (242)
T d1oxxk2 231 NPVSIQV 237 (242)
T ss_dssp SCSSHHH
T ss_pred CCCCHHH
T ss_conf 8999799
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=380.70 Aligned_cols=221 Identities=32% Similarity=0.503 Sum_probs=191.0
Q ss_pred EEEEEEEEECCCCCCC-CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH---HH
Q ss_conf 8999688989999984-3210105998489599998499998578999983368799737999895068999787---72
Q 000830 1018 IELRGVHFSYPSRPEV-VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS---LR 1093 (1265)
Q Consensus 1018 I~f~~Vsf~Y~~~~~~-~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 1093 (1265)
|+++||+++|+.+... .+|+|+||+|++||.+||+||||||||||++++.|+.+|++|+|.++|.|+...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCEEEECCCCCCCC-CHHHHHCCCC--CCCC----HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 432898147888823-3889960399--9999----88999999994138889818787664126988989935999999
Q 000830 1094 KHIALVQQEPALFAT-SIYENILYGK--DGAS----EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVA 1166 (1265)
Q Consensus 1094 ~~i~~VpQd~~LF~g-TIreNl~~g~--~~~~----deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQria 1166 (1265)
+++++|||++.+|+. |++||+.++. ...+ ++.+.++++.+++.++.+. ....||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~-----------~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSS-----------CBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC-----------CHHHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699035548-----------94349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99986149988887267689998989999999999808--9659999249114420-28799994988989339345620
Q 000830 1167 IARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVE 1243 (1265)
Q Consensus 1167 lARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt~~eLl~ 1243 (1265)
|||||+.+|++|+|||||++||+.+...|++.|++..+ +.|+|+|||++..+.. ||||++|++|+|+|.|+|+|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCHH
Q ss_conf 288079
Q 000830 1244 NEDGAY 1249 (1265)
Q Consensus 1244 ~~~g~y 1249 (1265)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=381.09 Aligned_cols=221 Identities=28% Similarity=0.472 Sum_probs=191.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH----H
Q ss_conf 189996889899999843210105998489599998499998578999983368799737999895068999787----7
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKS----L 1092 (1265)
Q Consensus 1017 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~----l 1092 (1265)
.|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|.+||.|+...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCCEEEECCCCCCCC-CHHHHHCCCC--CCCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 2432898147888823-3889960399--99998----899999999413888981878766412698898993599999
Q 000830 1093 RKHIALVQQEPALFAT-SIYENILYGK--DGASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRV 1165 (1265)
Q Consensus 1093 R~~i~~VpQd~~LF~g-TIreNl~~g~--~~~~d----eei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQri 1165 (1265)
|+++++|||+|.||+. |++||+.++. ...+. +.+.+.++.+++.++.... ...||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~-----------p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-----------PRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-----------GGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCC-----------HHHCCHHHHHHH
T ss_conf 255120022122231011667633068772999899999999999875996676299-----------334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 999986149988887267689998989999999999808--9659999249114420-2879999498898933934562
Q 000830 1166 AIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLV 1242 (1265)
Q Consensus 1166 alARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt~~eLl 1242 (1265)
+|||||+.+|++|+|||||++||+.+...|++.|++..+ |.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HCCCCHHHH
Q ss_conf 028807999
Q 000830 1243 ENEDGAYFK 1251 (1265)
Q Consensus 1243 ~~~~g~y~~ 1251 (1265)
+++...|-+
T Consensus 229 ~~P~~~~~~ 237 (240)
T d1g2912 229 DKPANTFVA 237 (240)
T ss_dssp HSCSBHHHH
T ss_pred HCCCCHHHH
T ss_conf 289998989
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-45 Score=369.15 Aligned_cols=226 Identities=30% Similarity=0.488 Sum_probs=191.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC--------
Q ss_conf 189996889899999843210105998489599998499998578999983368799737999895068999--------
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN-------- 1088 (1265)
Q Consensus 1017 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-------- 1088 (1265)
.|+++|++++|.+ ..+|+|+||+|++||++||+||||||||||++++.|+++|++|+|++||.|+...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCCEEEECCCCCCCC-CHHHHHCCC---CCCCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -----78772432898147888823-388996039---999998----89999999941388898187876641269889
Q 000830 1089 -----LKSLRKHIALVQQEPALFAT-SIYENILYG---KDGASE----GEVIEAAKLANAHSFISALPEGYSTKVGERGV 1155 (1265)
Q Consensus 1089 -----l~~lR~~i~~VpQd~~LF~g-TIreNl~~g---~~~~~d----eei~~al~~~~l~~~i~~Lp~Gldt~vge~G~ 1155 (1265)
...+|+++++|||+|.+|+. |++||+.++ ....+. +.+.++++.+++.+.... ....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG----------KYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT----------SCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC----------CCCC
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430----------6822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEE
Q ss_conf 899359999999998614998888726768999898999999999980-89659999249114420-2879999498898
Q 000830 1156 QLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKII 1233 (1265)
Q Consensus 1156 ~LSgGQrQrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~iv 1233 (1265)
.|||||+||++|||||..+|++|+|||||++||+.+...|++.|++.. +|+|+|+|||+++.+.. ||||+||.+|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHCCCCHHHH-HHHH
Q ss_conf 933934562028807999-9998
Q 000830 1234 EQGTHSSLVENEDGAYFK-LINL 1255 (1265)
Q Consensus 1234 e~Gt~~eLl~~~~g~y~~-l~~~ 1255 (1265)
|.|+|+|+++++...|.+ ++..
T Consensus 229 ~~g~~~ev~~~P~~~~~~~ll~~ 251 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQQFLKG 251 (258)
T ss_dssp EEECHHHHHHSCCSHHHHHHHHH
T ss_pred EECCHHHHHHCCCCHHHHHHHHC
T ss_conf 98499999838999999998818
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=372.80 Aligned_cols=211 Identities=33% Similarity=0.508 Sum_probs=177.3
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH----
Q ss_conf 899968898999998-432101059984895999984999985789999833687997379998950689997877----
Q 000830 1018 IELRGVHFSYPSRPE-VVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSL---- 1092 (1265)
Q Consensus 1018 I~f~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l---- 1092 (1265)
|+++||+++|+.... ..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|++||.|+..++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCEEEECCCCCCCC-CHHHHHCCCC-----CCCCHHH----HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2432898147888823-3889960399-----9999889----9999999413888981878766412698898993599
Q 000830 1093 RKHIALVQQEPALFAT-SIYENILYGK-----DGASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQK 1162 (1265)
Q Consensus 1093 R~~i~~VpQd~~LF~g-TIreNl~~g~-----~~~~dee----i~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQr 1162 (1265)
|++|+||+|+|.+|+. |++||+.++. +..+.++ +.+.++.+++.+ . .....-.+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~---~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-------R---FANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCG-------G---GTTCCGGGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHH-------H---HHCCCHHHCCHHHH
T ss_conf 5557788041241768668887757888722478999999999999887624234-------5---53488023899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 99999998614998888726768999898999999999980--89659999249114420287999949889893393
Q 000830 1163 QRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIKNADQISVIESGKIIEQGTH 1238 (1265)
Q Consensus 1163 QrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~--~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt~ 1238 (1265)
||++|||||+.+|++|+||||||+||+.+...|++.|++.. .++|+|+|||+++.+..||||++|++|+|++.|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.7e-44 Score=358.59 Aligned_cols=217 Identities=25% Similarity=0.417 Sum_probs=181.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC-C
Q ss_conf 189996889899999843210105998489599998499998578999983368799737999895068999787724-3
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRK-H 1095 (1265)
Q Consensus 1017 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~-~ 1095 (1265)
-|+++||+++|++ ..+|+||||++++||.+||+||||||||||++++.|+++|++|+|.++|.|+...+.++.++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred CEEEECCCCCCCC-CHHHHHCCCCCC---------------CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 2898147888823-388996039999---------------998899999999413888981878766412698898993
Q 000830 1096 IALVQQEPALFAT-SIYENILYGKDG---------------ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSG 1159 (1265)
Q Consensus 1096 i~~VpQd~~LF~g-TIreNl~~g~~~---------------~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSg 1159 (1265)
++++||+|.+|.. |++||+.++... ..+++..+.+ .+.++.+ |++........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA-----FKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHH-----HHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 872577642478874232143013330345045665421353289999999-----9998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECC
Q ss_conf 59999999998614998888726768999898999999999980-89659999249114420-28799994988989339
Q 000830 1160 GQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGT 1237 (1265)
Q Consensus 1160 GQrQrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt 1237 (1265)
|||||++|||||+.+|++|||||||++||+.+...+++.|++.. +|+|+|+|+|+++.+.. ||||+||++|+|++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHH
Q ss_conf 345620
Q 000830 1238 HSSLVE 1243 (1265)
Q Consensus 1238 ~~eLl~ 1243 (1265)
|+|+.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHHH
T ss_conf 899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.9e-44 Score=356.79 Aligned_cols=220 Identities=28% Similarity=0.457 Sum_probs=183.5
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH-C
Q ss_conf 618999688989999984321010599848959999849999857899998336879973799989506899978772-4
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLR-K 1094 (1265)
Q Consensus 1016 g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR-~ 1094 (1265)
--|+++|++++|++ ..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|+++|.|+...+.+..+ .
T Consensus 5 ~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 07999618999899---888830257888997999999999859999999967888880389842443446608888874
Q ss_pred CCEEEECCCCCCCC-CHHHHHCCCCCC-CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 32898147888823-388996039999-9988999999994138889818787664126988989935999999999861
Q 000830 1095 HIALVQQEPALFAT-SIYENILYGKDG-ASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172 (1265)
Q Consensus 1095 ~i~~VpQd~~LF~g-TIreNl~~g~~~-~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl 1172 (1265)
.++++||++.+|+. |++||+.++... ...++..+.++.+- +....+.+..+ ....+||||||||++|||||+
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~----~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFPRLKERLK----QLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCHHHHTTTT----SBSSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHCHHHHHH----CCHHHCCHHHHHHHHHHHHHH
T ss_conf 235567655457763699999988873278889999999999--87417688875----854338999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 4998888726768999898999999999980-89659999249114420-287999949889893393456202
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1173 ~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt~~eLl~~ 1244 (1265)
.+|++|+|||||++||+.+...+++.|++.. +|+|+|+++|+++.+.. ||||+||++|++++.|+|+|++++
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 29987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.5e-44 Score=354.70 Aligned_cols=220 Identities=27% Similarity=0.445 Sum_probs=187.4
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 61899968898999998432101059984895999984999985789999833687997379998950689997877243
Q 000830 1016 GTIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1016 g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
|.|+++|++++|.. .++|+|+||+|++||.+||+||||||||||+++|.|++.|++|+|.++|.|+.+ ..+.+|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446-83988721
Q ss_pred CEEEECCCCCCCC-CHHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2898147888823-3889960399--999988999999994138889818787664126988989935999999999861
Q 000830 1096 IALVQQEPALFAT-SIYENILYGK--DGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172 (1265)
Q Consensus 1096 i~~VpQd~~LF~g-TIreNl~~g~--~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl 1172 (1265)
++||||++.+|.. |++||+.+.. ...+.+++.+..+.+ ++.+ +++.........||||||||++|||||+
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 4998888726768999898999999999980-89659999249114420-28799994988989339345620288
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENED 1246 (1265)
Q Consensus 1173 ~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt~~eLl~~~~ 1246 (1265)
.+|+||+|||||++||+.+...+++.+++.. +|+|+|++||+++.+.. ||||++|++|+|++.|+|+++.++..
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 5999887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.8e-44 Score=353.06 Aligned_cols=221 Identities=30% Similarity=0.467 Sum_probs=188.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 28999579987999997541223599529979999839999489999999713579853699899417999968885410
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++++|+ +..+|+++||++++||+++|+||||||||||+++++|+++|++|+|.++|+|+...++. ++.|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCCC-CHHHHHCCCCCCC--CHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 688467765402-3899860499999--9999999999912899996196542110039999899679999999998613
Q 000830 461 GLVNQEPALFAT-TIRENILYGKDDA--TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 461 ~~v~Q~~~l~~~-ti~eNi~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~ 537 (1265)
+||+|++.+|.. |++||+.++.... +.+++.+.. .+.++.+ |++.........||||||||++|||||..
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV-----RWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHH-----HHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 9980033534222099999999987399999999999-----9999875--98556609954699999889999766404
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHC-CCEEEEEECCEEEEEECCCHHCCCCCHHH
Q ss_conf 998889827678999898999999999870-8-9759998369135430-49899995988998607301105995589
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAY 613 (1265)
Q Consensus 538 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 613 (1265)
+|+|++||||||+||+.+...+++.+.++. + |+|+|+|||+++.+.. ||+|++|++|+|+++|+++++.++|...|
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~ 232 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 232 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 9982430688666898999899999999987319807999489999998699999998999999859999986899989
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.1e-43 Score=350.08 Aligned_cols=214 Identities=32% Similarity=0.534 Sum_probs=184.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89995799879999975412235995299799998399994899999997135798536998994179999688854106
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|++ .+|+|+||++++||+++|+|||||||||++++|+|+.+|++|+|.++|.|+.++++. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88467765402-38998604999---999999999999912899996196542110039999899679999999998613
Q 000830 462 LVNQEPALFAT-TIRENILYGKD---DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK 537 (1265)
Q Consensus 462 ~v~Q~~~l~~~-ti~eNi~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~ 537 (1265)
||+|++.+|.. |++||+.++.. ....+++.++++..++ ..........||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC-----------TTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-----------HHHHHCCHHHCCHHHHCCHHHHHHHHC
T ss_conf 151211117466577888887764055389999999998256-----------555758955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHC-CCEEEEEECCEEEEEECCCHHCCCCCHH
Q ss_conf 998889827678999898999999999870--89759998369135430-4989999598899860730110599558
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSA 612 (1265)
Q Consensus 538 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 612 (1265)
+|+++|||||||+||+.+...+++.+.++. .|.|+|+|||+++.+.. ||+|++|.+|++++.|+++++.++|...
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~ 222 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEG 222 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTT
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCH
T ss_conf 677144347876799899999999999998647968999749999999969999999799999986999998689987
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-44 Score=354.98 Aligned_cols=216 Identities=29% Similarity=0.498 Sum_probs=184.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89995799879999975412235995299799998399994899999997135798536998994179999688854106
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
|+++|++++|+ +..+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|.++.+.++. ++.|+
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 99999999989---99998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EECCCCCCCCC-CHHHHHCCCCCCCC------HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88467765402-38998604999999------999999999912899996196542110039999899679999999998
Q 000830 462 LVNQEPALFAT-TIRENILYGKDDAT------MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRA 534 (1265)
Q Consensus 462 ~v~Q~~~l~~~-ti~eNi~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARa 534 (1265)
||+|+|.+|.. |++||+.++..... .+++.+.++..++.+ ........||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-----------~~~~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHH
T ss_conf 34334202643337889789998759988999999999997578865-----------6648965699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHC-CCEEEEEECCEEEEEECCCHHCCCCCH
Q ss_conf 613998889827678999898999999999870--89759998369135430-498999959889986073011059955
Q 000830 535 IVKNPSILLLDEATSALDAESENSVQEALDRVM--VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNS 611 (1265)
Q Consensus 535 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 611 (1265)
|+.+|++++|||||++||+.+...+++.+.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++|..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738999
Q ss_pred HH
Q ss_conf 89
Q 000830 612 AY 613 (1265)
Q Consensus 612 ~~ 613 (1265)
.|
T Consensus 225 ~~ 226 (232)
T d2awna2 225 RF 226 (232)
T ss_dssp HH
T ss_pred HH
T ss_conf 79
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-43 Score=350.09 Aligned_cols=218 Identities=30% Similarity=0.526 Sum_probs=185.2
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899957998799999-75412235995299799998399994899999997135798536998994179999688---85
Q 000830 382 IEFKDVSFCYPSRPD-VAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW---LR 457 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 457 (1265)
|+++|++++|+.+.. ..+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.++...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HHEEEECCCCCCCCC-CHHHHHCCCC-----CCC-CHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 410688467765402-3899860499-----999-999999999991289999619654211003999989967999999
Q 000830 458 QQIGLVNQEPALFAT-TIRENILYGK-----DDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1265)
Q Consensus 458 ~~i~~v~Q~~~l~~~-ti~eNi~~~~-----~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqria 530 (1265)
++++||+|++.+|+. |++||+.++. +.. ..+++.+.++..++ ++ ........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL-------~~----~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-------GD----KHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHST-------TT----TTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-------CH----HHHCCHHHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699-------03----554894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHC-CCEEEEEECCEEEEEECCCHHCC
Q ss_conf 9998613998889827678999898999999999870-8-9759998369135430-49899995988998607301105
Q 000830 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 531 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
|||||..+|+++|+||||++||+.+...+++.+.++. + |.|+|+|||++..+.. ||+|++|++|+|++.|+++++.+
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCC
Q ss_conf 995
Q 000830 608 NPN 610 (1265)
Q Consensus 608 ~~~ 610 (1265)
+|.
T Consensus 231 ~P~ 233 (240)
T d3dhwc1 231 HPK 233 (240)
T ss_dssp SSC
T ss_pred CCC
T ss_conf 899
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-43 Score=352.02 Aligned_cols=214 Identities=33% Similarity=0.483 Sum_probs=177.6
Q ss_pred EEEEEEEEECCCCC-CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 89995799879999-9754122359952997999983999948999999971357985369989941799996888----
Q 000830 382 IEFKDVSFCYPSRP-DVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL---- 456 (1265)
Q Consensus 382 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---- 456 (1265)
|+++|++++|+... ...+|+|+||++++||+++|+||||||||||+++++|+++|++|+|.++|.++..++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHHEEEECCCCCCCCC-CHHHHHCCCC-----CCCCHHHHH-HHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5410688467765402-3899860499-----999999999-99999128999961965421100399998996799999
Q 000830 457 RQQIGLVNQEPALFAT-TIRENILYGK-----DDATMEEIT-RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 457 r~~i~~v~Q~~~l~~~-ti~eNi~~~~-----~~~~~~~~~-~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqri 529 (1265)
|++|+||+|+|.++.. |++||+.++. .....++.. ++.... + .-.+++. .......+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~L~~~---~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL---K-MAELEER---FANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHH---H-HTTCCGG---GTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---H-HHCHHHH---HHCCCHHHCCHHHHHHH
T ss_conf 555778804124176866888775788872247899999999999988---7-6242345---53488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHCCCEEEEEECCEEEEEECC
Q ss_conf 99998613998889827678999898999999999870-8-9759998369135430498999959889986073
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRNADVIAVVQGRKIVKTGSH 602 (1265)
Q Consensus 530 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 602 (1265)
+|||||..+|++++||||||+||+.+...+++.+.++. + |+|+|+|||+++.++.||+|++|++|+|+++|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=9.4e-44 Score=352.87 Aligned_cols=221 Identities=33% Similarity=0.477 Sum_probs=186.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 289995799879999975412235995299799998399994899999997135798536998994179999---68885
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLD---LKWLR 457 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r 457 (1265)
.|+++|++++|+++ +..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred HHEEEECCCCCCCCC-CHHHHHCCCCCCC--CHHH----HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 410688467765402-3899860499999--9999----99999991289999619654211003999989967999999
Q 000830 458 QQIGLVNQEPALFAT-TIRENILYGKDDA--TMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIA 530 (1265)
Q Consensus 458 ~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~--~~~~----~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqria 530 (1265)
++++||+|+|.||.. |++|||.++.... ...+ +.+.++..+ +..........||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~g-----------L~~~~~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD-----------IHHVLNHFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTT-----------CGGGTTSCGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----------HHHHHHCCHHHCCHHHHHHHH
T ss_conf 451477304334666657777665567613799999999999986659-----------176664895459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHH-CCCEEEEEECCEEEEEECCCHHCC
Q ss_conf 9998613998889827678999898999999999870-8-975999836913543-049899995988998607301105
Q 000830 531 ISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELIS 607 (1265)
Q Consensus 531 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 607 (1265)
|||||..+|+++++|||||+||+.+...+++.++++. + |.|+|+|||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CCCHHH
Q ss_conf 995589
Q 000830 608 NPNSAY 613 (1265)
Q Consensus 608 ~~~~~~ 613 (1265)
+|...|
T Consensus 231 ~P~~~~ 236 (242)
T d1oxxk2 231 NPVSIQ 236 (242)
T ss_dssp SCSSHH
T ss_pred CCCCHH
T ss_conf 899979
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7e-43 Score=346.08 Aligned_cols=217 Identities=31% Similarity=0.519 Sum_probs=180.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 89996889899999843210105998489599998499998578999983368799737999895068999787724328
Q 000830 1018 IELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIA 1097 (1265)
Q Consensus 1018 I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1097 (1265)
+++ ++..+|.. . .+ |+||+++ +|.+||+||||||||||+++|.|+++|++|+|.++|+|+.+++.. |++|+
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899---9-99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EEECCCCCCCC-CHHHHHCCCCCCCCHHH----HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98147888823-38899603999999889----99999994138889818787664126988989935999999999861
Q 000830 1098 LVQQEPALFAT-SIYENILYGKDGASEGE----VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL 1172 (1265)
Q Consensus 1098 ~VpQd~~LF~g-TIreNl~~g~~~~~dee----i~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl 1172 (1265)
||||++.+|+. |++||+.++....+..+ +.++++.+++ +.........||||||||++||||++
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl-----------~~~~~~~~~~LSGG~kQRvaiAral~ 142 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-----------AHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC-----------TTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 2523144352201557666532336778899999999986383-----------75665794448999989999987775
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf 49988887267689998989999999999808--9659999249114420-28799994988989339345620288079
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLMR--KRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVENEDGAY 1249 (1265)
Q Consensus 1173 ~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~--~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt~~eLl~~~~g~y 1249 (1265)
.+|++|+||||||+||+.+...+++.+++..+ +.|+|+|||.++.+.. ||||++|++|++++.|+|+|+++.++...
T Consensus 143 ~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v 222 (240)
T d2onka1 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEV 222 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHH
T ss_conf 16770675286555887999999999999987439769998189999999699999998999999906999832998899
Q ss_pred HHHHH
Q ss_conf 99999
Q 000830 1250 FKLIN 1254 (1265)
Q Consensus 1250 ~~l~~ 1254 (1265)
.+++.
T Consensus 223 ~~fl~ 227 (240)
T d2onka1 223 AEFLS 227 (240)
T ss_dssp HHHGG
T ss_pred HHHHC
T ss_conf 99857
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.1e-43 Score=352.29 Aligned_cols=219 Identities=29% Similarity=0.485 Sum_probs=185.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 289995799879999975412235995299799998399994899999997135798536998994179999688----8
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKW----L 456 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~----~ 456 (1265)
.|+++|++++|+ +..+++|+||++++||+++|+|||||||||++++|.|++.|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HHHEEEECCCCCCCCC-CHHHHHCCCCC--CCCHHH----HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5410688467765402-38998604999--999999----9999999128999961965421100399998996799999
Q 000830 457 RQQIGLVNQEPALFAT-TIRENILYGKD--DATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRI 529 (1265)
Q Consensus 457 r~~i~~v~Q~~~l~~~-ti~eNi~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqri 529 (1265)
|+.|+||+|+|.+|.. |++||+.++.. ....++ +.+.++..+ +++ ........||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~-------l~~----~~~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG-------LTE----LLNRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-------CGG----GTTCCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-------CHH----HHCCCHHHCCHHHHHHH
T ss_conf 2551200221222310116676330687729998999999999998759-------966----76299334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHC-CCEEEEEECCEEEEEECCCHHC
Q ss_conf 99998613998889827678999898999999999870-8-9759998369135430-4989999598899860730110
Q 000830 530 AISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-V-GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELI 606 (1265)
Q Consensus 530 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 606 (1265)
+|||||..+|++++|||||++||+.+...+++.+.++. + |.|+|+|||+++.+.. ||+|++|++|++++.|+++|+.
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred CCCCHHH
Q ss_conf 5995589
Q 000830 607 SNPNSAY 613 (1265)
Q Consensus 607 ~~~~~~~ 613 (1265)
.+|...|
T Consensus 229 ~~P~~~~ 235 (240)
T d1g2912 229 DKPANTF 235 (240)
T ss_dssp HSCSBHH
T ss_pred HCCCCHH
T ss_conf 2899989
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2e-42 Score=342.48 Aligned_cols=221 Identities=29% Similarity=0.461 Sum_probs=183.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCH-------
Q ss_conf 2899957998799999754122359952997999983999948999999971357985369989941799996-------
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDL------- 453 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~------- 453 (1265)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred ------HHHHHHEEEECCCCCCCCC-CHHHHHCCCC---CCCCHHH----HHHHHHHHCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------8885410688467765402-3899860499---9999999----999999912899996196542110039999
Q 000830 454 ------KWLRQQIGLVNQEPALFAT-TIRENILYGK---DDATMEE----ITRAAKLSEAMSFISNLPERFETQVGERGI 519 (1265)
Q Consensus 454 ------~~~r~~i~~v~Q~~~l~~~-ti~eNi~~~~---~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~ 519 (1265)
..+|.+++||+|+|.+|+. |+.||+.++. ......+ +.+++...++.+.. . .....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~----~~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA------Q----GKYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH------H----TSCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH------H----CCCCC
T ss_conf 5176799974544899833231411010213656578762999899999999999982995244------3----06822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHC-CCEEEEEECCEEE
Q ss_conf 899679999999998613998889827678999898999999999870-89759998369135430-4989999598899
Q 000830 520 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIV 597 (1265)
Q Consensus 520 ~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 597 (1265)
+||||||||++|||||..+|+++||||||++||+.+...+++.++++. +|+|+|+|||++..+.. ||+|++|.+|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EEECCCHHCCCCCHHHH
Q ss_conf 86073011059955899
Q 000830 598 KTGSHEELISNPNSAYA 614 (1265)
Q Consensus 598 ~~g~~~~l~~~~~~~~~ 614 (1265)
+.|++++++.+|...|.
T Consensus 229 ~~g~~~ev~~~P~~~~~ 245 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRL 245 (258)
T ss_dssp EEECHHHHHHSCCSHHH
T ss_pred EECCHHHHHHCCCCHHH
T ss_conf 98499999838999999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.2e-41 Score=334.48 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=182.7
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHH-HH
Q ss_conf 52899957998799999754122359952997999983999948999999971357985369989941799996888-54
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWL-RQ 458 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~ 458 (1265)
-.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+...+.+.. |.
T Consensus 5 ~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 07999618999899---888830257888997999999999859999999967888880389842443446608888874
Q ss_pred HEEEECCCCCCCCC-CHHHHHCCCCCCC-CHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 10688467765402-3899860499999-999999999991289999619654211003999989967999999999861
Q 000830 459 QIGLVNQEPALFAT-TIRENILYGKDDA-TMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 459 ~i~~v~Q~~~l~~~-ti~eNi~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~ 536 (1265)
.++|+||++.+|+. |++||+.++.... ..+...+..... ...+ .++.........+||||||||++||||+.
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH-HCHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 23556765545776369999998887327888999999999-----9874-17688875854338999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHH-CCCEEEEEECCEEEEEECCCHHCCC
Q ss_conf 3998889827678999898999999999870-8975999836913543-0498999959889986073011059
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 537 ~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
.+|++|+|||||++||+.+...+++.++++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 29987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-41 Score=334.63 Aligned_cols=216 Identities=24% Similarity=0.395 Sum_probs=180.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHH-HH
Q ss_conf 28999579987999997541223599529979999839999489999999713579853699899417999968885-41
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLR-QQ 459 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 459 (1265)
-++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.|+...++...+ ..
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCCC-CHHHHHCCCCCCC---------------CHHH-HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 0688467765402-3899860499999---------------9999-999999912899996196542110039999899
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKDDA---------------TMEE-ITRAAKLSEAMSFISNLPERFETQVGERGIQLS 522 (1265)
Q Consensus 460 i~~v~Q~~~l~~~-ti~eNi~~~~~~~---------------~~~~-~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LS 522 (1265)
|+|+||+|.+|.. |++||+.++.... ..++ ..++.+ .++.+ +..........+||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK------ILEFL--KLSHLYDRKAGELS 152 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHH------HHHHT--TCGGGTTSBGGGSC
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHH------HHHHC--CCCHHCCCCHHHCC
T ss_conf 87257764247887423214301333034504566542135328999999999------98761--96302059535699
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHH-CCCEEEEEECCEEEEEE
Q ss_conf 679999999998613998889827678999898999999999870-8975999836913543-04989999598899860
Q 000830 523 GGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTG 600 (1265)
Q Consensus 523 gGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 600 (1265)
||||||++||||+..+|+++||||||++||+.+...+++.++++. +|+|++++||+++.+. .||+|++|.+|+++++|
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf 18888999999997592723243976569999999999999999978998999947699999869999999699899996
Q ss_pred CCCHHCC
Q ss_conf 7301105
Q 000830 601 SHEELIS 607 (1265)
Q Consensus 601 ~~~~l~~ 607 (1265)
+++|+.+
T Consensus 233 ~~~e~~~ 239 (254)
T d1g6ha_ 233 RGEEEIK 239 (254)
T ss_dssp ESHHHHH
T ss_pred CHHHHHH
T ss_conf 6899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.6e-40 Score=327.75 Aligned_cols=218 Identities=26% Similarity=0.412 Sum_probs=184.2
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHH
Q ss_conf 52899957998799999754122359952997999983999948999999971357985369989941799996888541
Q 000830 380 GHIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQ 459 (1265)
Q Consensus 380 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 459 (1265)
|.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|++.|++|+|.++|.|+.+ .+...|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446-83988721
Q ss_pred EEEECCCCCCCCC-CHHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 0688467765402-38998604999--99999999999991289999619654211003999989967999999999861
Q 000830 460 IGLVNQEPALFAT-TIRENILYGKD--DATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIV 536 (1265)
Q Consensus 460 i~~v~Q~~~l~~~-ti~eNi~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~ 536 (1265)
++|+||++.+|.. |++||+.+... .....++.+..+.. .+.. ++.........+||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--l~~~-----~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA--TEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHH-----CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC-----CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999--9867-----9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHC-CCEEEEEECCEEEEEECCCHHCCC
Q ss_conf 3998889827678999898999999999870-89759998369135430-498999959889986073011059
Q 000830 537 KNPSILLLDEATSALDAESENSVQEALDRVM-VGRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 537 ~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
.+|++++|||||++||+.+...+++.++++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.7e-40 Score=323.41 Aligned_cols=219 Identities=31% Similarity=0.457 Sum_probs=178.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89995799879999975412235995299799998399994899999997135798536998994179999688854106
Q 000830 382 IEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 382 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
+++ ++..+|++ . .+ |+||++. +++++|+||||||||||+++|+|+++|++|+|.++|.|+.++++. |++|+
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899---9-99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCCC-CHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88467765402-38998604999999999999999912899996196542110039999899679999999998613998
Q 000830 462 LVNQEPALFAT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPS 540 (1265)
Q Consensus 462 ~v~Q~~~l~~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ 540 (1265)
||+|++.+|+. ||+||+.|+.......+..+. +.+.++.+ |+..........||||||||++||||++.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 252314435220155766653233677889999-----99999863--83756657944489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHC-CCEEEEEECCEEEEEECCCHHCCCCCHHHHHH
Q ss_conf 8898276789998989999999998708--9759998369135430-49899995988998607301105995589999
Q 000830 541 ILLLDEATSALDAESENSVQEALDRVMV--GRTTVVVAHRLSTIRN-ADVIAVVQGRKIVKTGSHEELISNPNSAYAAL 616 (1265)
Q Consensus 541 ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 616 (1265)
+++||||||+||+.+...+++.++++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++.+.++.....+
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~f 225 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEF 225 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHH
T ss_conf 0675286555887999999999999987439769998189999999699999998999999906999832998899998
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-39 Score=320.09 Aligned_cols=209 Identities=26% Similarity=0.407 Sum_probs=181.4
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 18999688989999984321010599848959999849999857899998336879973799989506899978772432
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
-++++||+++| +|+||||+|++||.+||+||||||||||+++|.|++ |.+|+|.++|.|+...+...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEEECCCC-CCCCCHHHHHCCCCCCCC-HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 89814788-882338899603999999-889999999941388898187876641269889899359999999998614-
Q 000830 1097 ALVQQEPA-LFATSIYENILYGKDGAS-EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLK- 1173 (1265)
Q Consensus 1097 ~~VpQd~~-LF~gTIreNl~~g~~~~~-deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~- 1173 (1265)
++++|+.. .|..++.+|+.++..+.. .+.+.++++..++ +..++....+||||||||++||||++.
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986598-----------7676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------998888726768999898999999999980-89659999249114420-287999949889893393456202
Q 000830 1174 ------NPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKN-ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1174 ------~p~ILiLDEaTSaLD~~te~~i~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrI~vl~~G~ive~Gt~~eLl~~ 1244 (1265)
+|+||+|||||++||+.+...+.+.+++.. +|+|+|+++|+++.+.. ||||++|++|++++.|+++|++.+
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-36 Score=296.15 Aligned_cols=191 Identities=21% Similarity=0.424 Sum_probs=159.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 18999688989999984321010599848959999849999857899998336879973799989506899978772432
Q 000830 1017 TIELRGVHFSYPSRPEVVIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1017 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
.|+++|++++|+ .++|+|+||+|++||.+||+||||||||||++++.|+++|++|+|.+||.++. .+|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCE
T ss_conf 599998999939----92884208898599899999999971999999996620567788999989626-----736708
Q ss_pred EEEECCCCCCCC-CHHHHHCCC----CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 898147888823-388996039----999998899999999413888981878766412698898993599999999986
Q 000830 1097 ALVQQEPALFAT-SIYENILYG----KDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV 1171 (1265)
Q Consensus 1097 ~~VpQd~~LF~g-TIreNl~~g----~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARAL 1171 (1265)
+++||++.++.. |+++|+.+. ....++++++++++..++.+ ++..++ +||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~----~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKLG----ELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBGG----GSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCCC----CCCCCHHHHHHHHHHH
T ss_conf 9995013578882899999999975488637999999998748856--------301268----6897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEEC
Q ss_conf 1499888872676899989899999999998089659999249114420287999949
Q 000830 1172 LKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIES 1229 (1265)
Q Consensus 1172 l~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~ 1229 (1265)
+.+|+++||||||++||+++...+++.|.+..+++++++|+|+- .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-36 Score=294.79 Aligned_cols=209 Identities=24% Similarity=0.407 Sum_probs=178.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 28999579987999997541223599529979999839999489999999713579853699899417999968885410
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
-++++||+++| .|+++||++++||+++|+||||||||||+++|.|+. |.+|+|.++|.++...+...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHCCCCCCCC-HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 68846776-540238998604999999-999999999912899996196542110039999899679999999998613-
Q 000830 461 GLVNQEPA-LFATTIRENILYGKDDAT-MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVK- 537 (1265)
Q Consensus 461 ~~v~Q~~~-l~~~ti~eNi~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~- 537 (1265)
+|++|+.. .|..++.+++.++..... .+.+.+++...+ ++..++....+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA-----------LDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTT-----------CTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCC-----------CHHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 2451213577442098876410014668999999998659-----------87676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHH-CCCEEEEEECCEEEEEECCCHHCCC
Q ss_conf ------99888982767899989899999999987-08975999836913543-0498999959889986073011059
Q 000830 538 ------NPSILLLDEATSALDAESENSVQEALDRV-MVGRTTVVVAHRLSTIR-NADVIAVVQGRKIVKTGSHEELISN 608 (1265)
Q Consensus 538 ------~~~ililDe~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 608 (1265)
+|+|+||||||++||+.+...+.+.++++ .+|+|+|++||+++.+. .||++++|++|++++.|++++++.+
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.5e-33 Score=273.37 Aligned_cols=190 Identities=22% Similarity=0.416 Sum_probs=152.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 28999579987999997541223599529979999839999489999999713579853699899417999968885410
Q 000830 381 HIEFKDVSFCYPSRPDVAIFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQI 460 (1265)
Q Consensus 381 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 460 (1265)
.|+++|++|+|+ .++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCC-CHHHHHCCC----CCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 688467765402-389986049----999999999999999128999961965421100399998996799999999986
Q 000830 461 GLVNQEPALFAT-TIRENILYG----KDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAI 535 (1265)
Q Consensus 461 ~~v~Q~~~l~~~-ti~eNi~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal 535 (1265)
+|+||++.++.. |+.||+.+. ......+++.++.+..+. . .++..+ .+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-------~-~~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV-------L-DLKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC-------C-CTTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-------C-CCCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 99950135788828999999999754886379999999987488-------5-630126----86897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEE
Q ss_conf 139988898276789998989999999998708975999836913543049899995
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQ 592 (1265)
Q Consensus 536 ~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 592 (1265)
+.+|+++||||||++||+.++..+++.+.++.+++++++++|+. .+..||.+.+|.
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~ 196 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLH 196 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEE
T ss_conf 64998999868620169999999999999998679999999916-254416123401
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=2.1e-25 Score=209.86 Aligned_cols=316 Identities=16% Similarity=0.212 Sum_probs=271.0
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999981204569899999999999796678999999999999830027840234478999999999999999999999
Q 000830 42 SLFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPKTASHKVAKYSLDFVYLSVAILFSSWIE 121 (1265)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1265)
.++++++|.+++++ .+.++.+++.+.++..+..+++++.++|..... ............++++.++..++.++.
T Consensus 3 ~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~l~~~~~~~~~~~~~~~i~~~~~ 76 (319)
T d3b60a2 3 TFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGK-----TDRSVLLWMPLVVIGLMILRGITSYIS 76 (319)
T ss_dssp HHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS-----TTHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999-999999999999999999999999999987446-----877899999999999999764533546
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999809901130366841799999935999999999999999999999999999999998
Q 000830 122 VSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFARV 201 (1265)
Q Consensus 122 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~l~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1265)
.++..+.+.+...++|.+++++++++|..+|++ .++|++++++++|++.+.+.+...+..++..+..+++.+++++.++
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (319)
T d3b60a2 77 SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 155 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 654434310001100047777650101111023-3322111112121210000111112001123344566888887652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999419999984526999999999999999999999
Q 000830 202 WQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRKA 281 (1265)
Q Consensus 202 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 281 (1265)
|.+++++++.+|+..++.....++..+..++.++..++.++...|.++|++++|.|++|+.+.+++++..++..+...+.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 235 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 235 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 00210256689999998876666877878988764456778877762487235311101024566666531356778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999878999999999999999999999983155556799999999999999996599999999999999999997333
Q 000830 282 GLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIER 361 (1265)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~ 361 (1265)
....+.......+......++++++|.+.+..|.++.|.+++.+........|+..+...+..+.++.+|.+|+++++|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 236 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87777406401000000237999999999980997899999999999999999999999999999999999999999669
Q ss_pred CCC
Q ss_conf 645
Q 000830 362 DTM 364 (1265)
Q Consensus 362 ~~~ 364 (1265)
++|
T Consensus 316 ~~E 318 (319)
T d3b60a2 316 EQE 318 (319)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=2.1e-25 Score=209.83 Aligned_cols=320 Identities=13% Similarity=0.100 Sum_probs=263.1
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999981204569899999999999796678999999999999830027840-234-47899999999999999999999
Q 000830 43 LFKLFAFADFYDYILMSLGSIGACVHGVSVPVFFIFFGKLINIIGLAYLFPK-TAS-HKVAKYSLDFVYLSVAILFSSWI 120 (1265)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 120 (1265)
++++++|.+++++ .+..+.+++++.++.....+++++.++|.+........ ... .........++++.++..++.++
T Consensus 2 lKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999-999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999980990113036684179999993599999999999999999999999999999999
Q 000830 121 EVSCWMYTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLGGFIIGFAR 200 (1265)
Q Consensus 121 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~G~l~s~l~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1265)
+.++....+.+...++|.+++++++++|+++|++ .++|++++++++|++.+++.+...+...+..+..+++.+++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9999999998556778888766540233210001-222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999999999999999999999941999998452699999999999999999999
Q 000830 201 VWQISLVTLSIVPLIALAGGMYAYVTIGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEDKAVKVYKEALSNTYKYGRK 280 (1265)
Q Consensus 201 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 280 (1265)
+|.++++.++..|+..++...+.++..+..++.++..++..+...|.++|+++||.|++|+.+.+++.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999987899999999999999999999998315555679999999999999999659999999999999999999733
Q 000830 281 AGLAKGLGLGSMHCVLFLSWSLLVWYVSVVVHKHISNGGESFTTMLNVVIAGLSLGQAAPDITAFIRAKAAAYPIFEMIE 360 (1265)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~ 360 (1265)
.....+........+..+...+.+++|.+.+.+|.++.|.+++.+........|+..+...+..+.++.++.+|+++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 3645
Q 000830 361 RDTM 364 (1265)
Q Consensus 361 ~~~~ 364 (1265)
++|+
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=6.5e-23 Score=190.47 Aligned_cols=317 Identities=12% Similarity=0.190 Sum_probs=276.3
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999986200357999999999999878889999999999986428512356389999999999999999999999999
Q 000830 683 SAIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQREVKKITILFCCAAVITVIVHAIEHLSF 762 (1265)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 762 (1265)
.+++++.+.+++|+.+..+.++.++.+...+..+..+...++...... .........+.++++.++..++.+++.++.
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~--~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT--DRSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST--THHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999999999999999999874468--778999999999999997645335466544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998299322123456646899999832999999999989999999999999999999997999
Q 000830 763 GIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFILNWRI 842 (1265)
Q Consensus 763 ~~~~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 842 (1265)
.+.+.+...++|.++++++++.|++||++ +++|++++|+++|++.+...+.......+.....++..++.++.++|.+
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 158 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 158 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 34310001100047777650101111023--3322111112121210000111112001123344566888887652002
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998664689999999999999998324999982329999999999997599999999999
Q 000830 843 TLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFIRGQI 922 (1265)
Q Consensus 843 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1265)
++++++.+|+.........+...+...+.++...+..+...|.++|++++|+++.|+.+.+++.+..++..+...+....
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
T d3b60a2 159 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10256689999998876666877878988764456778877762487235311101024566666531356778888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999999999999752105599999999999999999999998999999999999999998524544
Q 000830 923 AGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLDRKTQ 1002 (1265)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 1002 (1265)
.........+.......+.+++|.+++..|.++.|.++..+.+......++..+......+.++..+.+|+.+++|.++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77406401000000237999999999980997899999999999999999999999999999999999999999669989
Q ss_pred C
Q ss_conf 5
Q 000830 1003 V 1003 (1265)
Q Consensus 1003 ~ 1003 (1265)
+
T Consensus 319 ~ 319 (319)
T d3b60a2 319 K 319 (319)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=1.3e-22 Score=188.23 Aligned_cols=317 Identities=14% Similarity=0.127 Sum_probs=267.1
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998620035799999999999987888999999999998642851235-6389----99999999999999999999
Q 000830 684 AIKLYSMVRPDWTYGVCGTICAIIAGAQMPLFALGVSQALVAYYMDWDTTQ-REVK----KITILFCCAAVITVIVHAIE 758 (1265)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~i~~~~~ 758 (1265)
.++++++.+++|+.+..+.++.++.+......++.++..++.......... .... .....+.+..++..++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999986267742155689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999829932212345664689999983299999999998999999999999999999999
Q 000830 759 HLSFGIMGERLTLRVREKMFSAILSNEIGWFDEMDNSSSILASRLESDATLLRTIVVDRSTILIQNFGLVTASFVIAFIL 838 (1265)
Q Consensus 759 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~ff~~~~~~~g~i~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1265)
.++..+.+.+...++|.+++++++++|++||++ +++|++++|+++|++.++..+...+...+..+..+++.+++++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999998556778888766540233210001--222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999999999866468999999999999999832499998232999999999999759999999
Q 000830 839 NWRITLVVVATYPLIISGHISEKLFFQGYGGNLSKAYLKANMLAAEAVSNIRTVAAFCSEDKVLELYSRELVEPSKRSFI 918 (1265)
Q Consensus 839 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~ 918 (1265)
+|.++++.++..|+.........+..++...+.++..++..+...|.++|+++||++++|+++.+++.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999975210559999999999999999999999899999999999999999852
Q 000830 919 RGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALVPDLLKGNQMAASVFEVLD 998 (1265)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~ 998 (1265)
..............+......+.+++|.+++..|.++.|.++....+......++..+.....++.++..+.+|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 4544
Q 000830 999 RKTQ 1002 (1265)
Q Consensus 999 ~~~~ 1002 (1265)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.54 E-value=1.5e-16 Score=140.93 Aligned_cols=159 Identities=12% Similarity=0.110 Sum_probs=107.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 99998499998578999983368799737999895068999787724328981478888233889960399999988999
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVI 1127 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~deei~ 1127 (1265)
+++|+||+|||||||++.+.+.+++..|.+..++.+....+...........++.+.++..+..++...+......+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023037625--
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--C
Q ss_conf 99999413888981878766412698898993599999999986149988887267689998989999999999808--9
Q 000830 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALQRLMR--K 1205 (1265)
Q Consensus 1128 ~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~--~ 1205 (1265)
..+|+|++|+.++++++.++|+++++|||+...+. .....+.+.+..+ +
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN 130 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCC
T ss_conf ---------------------------66532013789999997409974230277731004--5799999998750579
Q ss_pred CEEEEEECCCHHHHCCCEEEEEECCEEEEECC
Q ss_conf 65999924911442028799994988989339
Q 000830 1206 RTTIIVAHRLSTIKNADQISVIESGKIIEQGT 1237 (1265)
Q Consensus 1206 ~TvI~IaHRl~ti~~~DrI~vl~~G~ive~Gt 1237 (1265)
+|+|.++|+.+....||++..+++|++++.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.43 E-value=6.3e-15 Score=128.24 Aligned_cols=159 Identities=11% Similarity=0.048 Sum_probs=105.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 99998399994899999997135798536998994179999688854106884677654023899860499999999999
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDATMEEIT 491 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~ 491 (1265)
+++|+||+|||||||++.++|.+++..|.+..++.+................++.+.++..+..++...++...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGV------ 75 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEE------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302303------
Q ss_pred HHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf 9999912899996196542110039999899679999999998613998889827678999898999999999870--89
Q 000830 492 RAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRVM--VG 569 (1265)
Q Consensus 492 ~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~ 569 (1265)
++. ...+++|+++|.++++++.++|+++++|||....+. ...+.+.+.+.. .+
T Consensus 76 -------------------~~~----~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 76 -------------------NVQ----YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN 130 (178)
T ss_dssp -------------------CHH----HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred -------------------CCC----HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCC
T ss_conf -------------------762----566532013789999997409974230277731004--5799999998750579
Q ss_pred CEEEEECCCCHHHHCCCEEEEEECCEEEEEEC
Q ss_conf 75999836913543049899995988998607
Q 000830 570 RTTVVVAHRLSTIRNADVIAVVQGRKIVKTGS 601 (1265)
Q Consensus 570 ~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 601 (1265)
+++|+++|+......+|++..+++|++++-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=3.7e-12 Score=106.60 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHCCCEEEEE
Q ss_conf 899359999999998----614998888726768999898999999999980-896599992491144202879999
Q 000830 1156 QLSGGQKQRVAIARA----VLKNPEILLLDEATSALDVESERVVQQALQRLM-RKRTTIIVAHRLSTIKNADQISVI 1227 (1265)
Q Consensus 1156 ~LSgGQrQrialARA----Ll~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~-~~~TvI~IaHRl~ti~~~DrI~vl 1227 (1265)
.+|||||.++++|-. ...++|+++||||+++||+.+...+.+.|.+.. .++-+|+|||++.++..+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.27 E-value=3.5e-11 Score=99.03 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHCCCEEEEE
Q ss_conf 9899679999999998----6139988898276789998989999999998708-97599983691354304989999
Q 000830 519 IQLSGGQKQRIAISRA----IVKNPSILLLDEATSALDAESENSVQEALDRVMV-GRTTVVVAHRLSTIRNADVIAVV 591 (1265)
Q Consensus 519 ~~LSgGqkqrialARa----l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~~l 591 (1265)
..+|||||.++++|=. .+.++++++||||+++||+.....+.+.|.++.. +.-+|++||++..+..||+.+..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=3.1e-10 Score=91.68 Aligned_cols=75 Identities=27% Similarity=0.370 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEE--EEC
Q ss_conf 899359999999998----61499888872676899989899999999998089659999249114420287999--949
Q 000830 1156 QLSGGQKQRVAIARA----VLKNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKNADQISV--IES 1229 (1265)
Q Consensus 1156 ~LSgGQrQrialARA----Ll~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~v--l~~ 1229 (1265)
.+|+|||+++.++.. ...+++++++|||-++|++.....+.+.|++..++.-+|++||++..+..+|+++. |++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000830 1230 G 1230 (1265)
Q Consensus 1230 G 1230 (1265)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=2.4e-09 Score=84.78 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEE--EE
Q ss_conf 98996799999999986----1399888982767899989899999999987089759998369135430498999--95
Q 000830 519 IQLSGGQKQRIAISRAI----VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAV--VQ 592 (1265)
Q Consensus 519 ~~LSgGqkqrialARal----~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~--l~ 592 (1265)
..+|+|||+...++..+ ..++.++++|||-++|++.....+.+.+....++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999999855488799998988999732428999996
Q ss_pred CC
Q ss_conf 98
Q 000830 593 GR 594 (1265)
Q Consensus 593 ~G 594 (1265)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.89 E-value=0.011 Score=32.66 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=27.2
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 41223599529979999839999489999999713
Q 000830 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 399 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
.|++..--+.+|+++.|.|++|+||||++.-++-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 68887469789808999947999799999999972
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.88 E-value=0.00082 Score=41.59 Aligned_cols=36 Identities=39% Similarity=0.511 Sum_probs=21.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 299799998399994899999997135798536998
Q 000830 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (1265)
Q Consensus 408 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~ 443 (1265)
..+..+.|+|++||||||+++.|+++.++..--+++
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 837888999403566257899986530145623311
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.75 E-value=0.014 Score=31.90 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=80.1
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCCCCCCCHHHHHCC-CEEEECCCCCCCCCHH
Q ss_conf 32101059984895999984999985789999833-687997379998950689997877243-2898147888823388
Q 000830 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR-FYDPTAGKVMVDGIDIKRLNLKSLRKH-IALVQQEPALFATSIY 1111 (1265)
Q Consensus 1034 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~idG~di~~~~l~~lR~~-i~~VpQd~~LF~gTIr 1111 (1265)
+-|+++..-+.+|+.+.|.|++|+||||++.-+.. +..-..-.+.+-.. +.+.+....+ ++...+-+.--..+.+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~~~~~~ 99 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQSDSLK 99 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 66888746978980899994799979999999997265533663457640---111135776999986458710101222
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCH
Q ss_conf 996039999998899999999413888981878766412698898993599999999986--149988887267689998
Q 000830 1112 ENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAV--LKNPEILLLDEATSALDV 1189 (1265)
Q Consensus 1112 eNl~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARAL--l~~p~ILiLDEaTSaLD~ 1189 (1265)
.+ .++...+.++.+.+...-.-.+-+........ ..+...+.. -.+|+++++|=-+ .+++
T Consensus 100 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~-~l~~ 161 (277)
T d1cr2a_ 100 RE---------------IIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHIS-IVVS 161 (277)
T ss_dssp HH---------------HHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEE-C---
T ss_pred CC---------------HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCC-CCCC
T ss_conf 22---------------14567788898874035214662143310689--999986543213676259970542-1203
Q ss_pred --------HHHHHHHHHHHHHC--CCCEEEEEECCC----------------HHH-------HCCCEEEEEEC
Q ss_conf --------98999999999980--896599992491----------------144-------20287999949
Q 000830 1190 --------ESERVVQQALQRLM--RKRTTIIVAHRL----------------STI-------KNADQISVIES 1229 (1265)
Q Consensus 1190 --------~te~~i~~~L~~~~--~~~TvI~IaHRl----------------~ti-------~~~DrI~vl~~ 1229 (1265)
+.-..+.+.+++.. .++++++++|=- +.+ ..||.++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 4654430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.0061 Score=34.78 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=21.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2997999983999948999999971
Q 000830 408 PAGKIVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 408 ~~g~~~~ivG~sGsGKSTl~~~l~g 432 (1265)
.+|+.+.|.|++|+|||||+.-++-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 5895899992899989999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.50 E-value=0.018 Score=31.07 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.3
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 5299799998399994899999997135
Q 000830 407 IPAGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 407 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+++|+.+.|.|++|||||+++.-++-..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8698499999189999999999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=2.1e-05 Score=54.06 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 999984999985789999833687997379998950
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID 1083 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1083 (1265)
.|.|+||.|+|||||++.+.+.+....+.+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999988999719999999999999779979999845
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.45 E-value=0.022 Score=30.48 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCCEEE-EEECCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHH
Q ss_conf 2101059-98489599998499998578999983368-799737999895068999787724328981478888233889
Q 000830 1035 IFKDFNL-KVRAGKSMALVGQSGSGKSTVLSLILRFY-DPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYE 1112 (1265)
Q Consensus 1035 vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIre 1112 (1265)
-|+.+-- -+++|..+-|.|++|||||++..-+..-. ....-.++++- +.+...++++
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~----e~~~~~~~~~----------------- 72 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY----EESRAQLLRN----------------- 72 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES----SSCHHHHHHH-----------------
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEC----CCCHHHHHHH-----------------
T ss_conf 7988456898698499999189999999999999999872324411212----6799999999-----------------
Q ss_pred HHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHH
Q ss_conf 960399999988999999994138889818787664126988989935999999999861-4998888726768999898
Q 000830 1113 NILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVL-KNPEILLLDEATSALDVES 1191 (1265)
Q Consensus 1113 Nl~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl-~~p~ILiLDEaTSaLD~~t 1191 (1265)
--.++ ...+++.. .+....+......... +...-.+.+++- .+|++++.|-.++.....+
T Consensus 73 ~~~~~---~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~ 133 (242)
T d1tf7a2 73 AYSWG---MDFEEMER---------------QNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGVS 133 (242)
T ss_dssp HHTTS---CCHHHHHH---------------TTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSC
T ss_pred HHHCC---CCHHHHHH---------------CCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC
T ss_conf 99829---98699854---------------5861799730001017-99999999999840885332204314304899
Q ss_pred HHHHHHHH---HHHC--CCCEEEEEECCCH----------HHHC-CCEEEEEEC
Q ss_conf 99999999---9980--8965999924911----------4420-287999949
Q 000830 1192 ERVVQQAL---QRLM--RKRTTIIVAHRLS----------TIKN-ADQISVIES 1229 (1265)
Q Consensus 1192 e~~i~~~L---~~~~--~~~TvI~IaHRl~----------ti~~-~DrI~vl~~ 1229 (1265)
+..+.+.+ .... .++|++++.|.-. .+.. +|-|+.|+.
T Consensus 134 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 134 NNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 999999999999999986983999985675125544577640464216999998
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.20 E-value=0.0023 Score=38.11 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 997999983999948999999971357985369
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i 441 (1265)
+|++++++|+||.|||||++.|.+......|+|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.0027 Score=37.56 Aligned_cols=35 Identities=31% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89599998499998578999983368799737999
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV 1079 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1079 (1265)
+|++.+++|+||.|||||++.|.+-.....|.|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.03 E-value=0.035 Score=28.88 Aligned_cols=122 Identities=17% Similarity=0.242 Sum_probs=66.3
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHH--------HCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCC-CH
Q ss_conf 5995299799998399994899999997--------13579853699899417999968885410688467765402-38
Q 000830 404 CLDIPAGKIVALVGGSGSGKSTVISLIE--------RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFAT-TI 474 (1265)
Q Consensus 404 ~~~i~~g~~~~ivG~sGsGKSTl~~~l~--------g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti 474 (1265)
++.+. ++.+.|.||+.+||||+++.+. |.+-|.+. +-++.-..+|.. ..
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~---------------------~~i~~~d~I~~~~~~ 87 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE---------------------AHLPLFDGIYTRIGA 87 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE---------------------EEECCCSEEEEECCC
T ss_pred EEEEC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCC---------------------EEEEECCEEEEEECC
T ss_conf 58847-86799978873453234556589999985250461375---------------------199401169999877
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
Q ss_conf 99860499999999999999991289999619654211003999989967999999999861399888982767899989
Q 000830 475 RENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAE 554 (1265)
Q Consensus 475 ~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~ 554 (1265)
.|++.-+.... ..|+.+.. ..+.. ..+..++|+||...+=|+.
T Consensus 88 ~d~~~~~~StF-~~el~~~~------~il~~------------------------------~~~~sLvliDE~~~gT~~~ 130 (224)
T d1ewqa2 88 SDDLAGGKSTF-MVEMEEVA------LILKE------------------------------ATENSLVLLDEVGRGTSSL 130 (224)
T ss_dssp ------CCSHH-HHHHHHHH------HHHHH------------------------------CCTTEEEEEESTTTTSCHH
T ss_pred CCCCCCCCCHH-HHHHHHHH------HHHCC------------------------------CCCCCEEEECCCCCCCCHH
T ss_conf 76023783078-98678898------77502------------------------------8977278554545686233
Q ss_pred HHHHHHHH-HHHHC-CCCEEEEECCCCHHHHC
Q ss_conf 89999999-99870-89759998369135430
Q 000830 555 SENSVQEA-LDRVM-VGRTTVVVAHRLSTIRN 584 (1265)
Q Consensus 555 ~~~~i~~~-l~~~~-~~~t~i~itH~~~~~~~ 584 (1265)
....+-.+ +..+. .+..++++||..+....
T Consensus 131 eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 131 DGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred HHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 20025888888886237613786520233322
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.99 E-value=0.0015 Score=39.54 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 979999839999489999999713579
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
|+++.|+|||||||||+.+.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.037 Score=28.67 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=23.9
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 52997999983999948999999971357
Q 000830 407 IPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 407 i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
+++...+.+.||+|||||++++.++..+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99888678668998882289999999829
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.95 E-value=0.029 Score=29.59 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=25.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 952997999983999948999999971357
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
.+++..-+.+.||+|+|||++++.+++.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.89 E-value=0.0021 Score=38.44 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999984999985789999833687
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
|+.+.|+||||||||||.+.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.89 E-value=0.015 Score=31.69 Aligned_cols=20 Identities=40% Similarity=0.466 Sum_probs=9.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998399994899999997
Q 000830 412 IVALVGGSGSGKSTVISLIE 431 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~ 431 (1265)
++.++|++||||||+++.|.
T Consensus 4 lIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999999999999999
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.04 Score=28.44 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=75.5
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHH
Q ss_conf 32101059984895999984999985789999833687997379998950689997877243289814788882338899
Q 000830 1034 VIFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYEN 1113 (1265)
Q Consensus 1034 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreN 1113 (1265)
.++.+ +.||+.+-|+|++|+||||++.-+.--. ..|.=..++.... ...+-|+.-|. ....+.+.
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~i--a~g~~~~~~~~~~-------~~~vl~~~~E~--~~~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQI--AGGPDLLEVGELP-------TGPVIYLPAED--PPTAIHHR 85 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHH--HTCCCTTCCCCCC-------CCCEEEEESSS--CHHHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHH--HCCCCCCCCCCCC-------CCCEEEEECCC--HHHHHHHH
T ss_conf 98689----5589589999289998999999999999--7699721112357-------87368985123--49999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----C
Q ss_conf 60399999988999999994138889818787664126988989935999999999861499888872676899-----9
Q 000830 1114 ILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSAL-----D 1188 (1265)
Q Consensus 1114 l~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILiLDEaTSaL-----D 1188 (1265)
+.--....+.++......... +....+... ...-....-.+ +.-..+++++++|--++.. |
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~lvviD~l~~~~~~~~~~ 151 (274)
T d1nlfa_ 86 LHALGAHLSAEERQAVADGLL-----------IQPLIGSLP--NIMAPEWFDGL-KRAAEGRRLMVLDTLRRFHIEEENA 151 (274)
T ss_dssp HHHHHTTSCHHHHHHHHHHEE-----------ECCCTTSCC--CTTSHHHHHHH-HHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred HHHHHHCCCHHHHHCCCCCCE-----------ECCCCCCCC--HHHHHHHHHHH-HHHCCCCCEEECCCHHHHCCCCCCC
T ss_conf 999862368666531233323-----------214567420--35789999998-8752676589628135422665232
Q ss_pred HHHHHHHHHHHHHHC--CCCEEEEEECCCH------------------HHH-CCCEEEEEEC
Q ss_conf 898999999999980--8965999924911------------------442-0287999949
Q 000830 1189 VESERVVQQALQRLM--RKRTTIIVAHRLS------------------TIK-NADQISVIES 1229 (1265)
Q Consensus 1189 ~~te~~i~~~L~~~~--~~~TvI~IaHRl~------------------ti~-~~DrI~vl~~ 1229 (1265)
......+.+.++... .++|+++|.|--. .+. .+|.++.|..
T Consensus 152 ~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r 213 (274)
T d1nlfa_ 152 SGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSS 213 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEE
T ss_conf 25689999887777644797540131005554446886653356427778742558999983
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.86 E-value=0.041 Score=28.37 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 999999999861399888982767899
Q 000830 525 QKQRIAISRAIVKNPSILLLDEATSAL 551 (1265)
Q Consensus 525 qkqrialARal~~~~~ililDe~ts~l 551 (1265)
++-|-.+.+|-...|-|+++||.-+-.
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~ 113 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIA 113 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTC
T ss_pred HHHHHHHHHHHHCCCCCEEHHHHHHCC
T ss_conf 999999999986398435687546324
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.66 E-value=0.0026 Score=37.69 Aligned_cols=26 Identities=38% Similarity=0.612 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99799998399994899999997135
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.|+++.|.|++||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.62 E-value=0.05 Score=27.69 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=18.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2997999983999948999999971
Q 000830 408 PAGKIVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 408 ~~g~~~~ivG~sGsGKSTl~~~l~g 432 (1265)
++-+.+.++|++||||||+++-+..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=7.9e-05 Score=49.50 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=28.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 79999839999489999999713579853699899
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 445 (1265)
+.+.|+||+|+|||||++.+.+.+....+.+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 69999889997199999999999997799799998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.005 Score=35.45 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 997999983999948999999971357
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
.|.++.|+||||+||+||.+.|...++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.54 E-value=0.012 Score=32.43 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 59999849999857899998336879973799989
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1081 (1265)
+.|.|+|++||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.053 Score=27.49 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=27.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 9848959999849999857899998336879973799989506
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI 1084 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1084 (1265)
.+++...+-+.||+|+|||++++.+.+.+... -+.+++.++
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 99988867866899888228999999982998--799886994
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.40 E-value=0.015 Score=31.81 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=31.6
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 998489599998499998578999983368799737999
Q 000830 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV 1079 (1265)
Q Consensus 1041 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1079 (1265)
.-++.|..+.|+|++||||||++++|+++.++..=-|.|
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 999837888999403566257899986530145623311
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.38 E-value=0.0048 Score=35.63 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 2997999983999948999999971357
Q 000830 408 PAGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 408 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
++|.++.|+|++||||||+.+.|...+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.32 E-value=0.0078 Score=33.97 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
.++++|++|+|||||++.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0072 Score=34.25 Aligned_cols=47 Identities=17% Similarity=0.382 Sum_probs=33.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHH
Q ss_conf 9999839999489999999713579853699899417999968885410688467765402389
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIR 475 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 475 (1265)
+++|.|++||||||+.+.|...+.-..+. ..+..++++.+......+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHH
T ss_conf 99996899998768999999997304689-----------------965999521568984588
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0083 Score=33.76 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=36.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC--------------CCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 89599998499998578999983368799--------------73799989506899978772432
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYDPT--------------AGKVMVDGIDIKRLNLKSLRKHI 1096 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~--------------~G~I~idG~di~~~~l~~lR~~i 1096 (1265)
+|..+.|+||||+||+||.+.|+.-++.. .|+ .||+|..-++.+...+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--CCCCCCEEECHHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655--432123343289999875
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.28 E-value=0.0074 Score=34.13 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8959999849999857899998336879973799989
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1081 (1265)
.|+.|.|+|++||||||+.+.|.+-+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.0033 Score=36.88 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99998399994899999997135798
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEPL 437 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~~ 437 (1265)
.++|+|++|||||||++-|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.07 E-value=0.0025 Score=37.78 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 9979999839999489999999713579853699
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEIL 442 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~ 442 (1265)
+|++++++|+||.|||||++.|.+......|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.00 E-value=0.0025 Score=37.80 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=30.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89599998499998578999983368799737999
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMV 1079 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1079 (1265)
+|++..++|+||.|||||++.|.+-.....|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.97 E-value=0.008 Score=33.88 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 9999839999489999999713579
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
+++|.|++||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.007 Score=34.35 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998499998578999983368799
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPT 1073 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~ 1073 (1265)
.++|+|++|||||||++.|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.91 E-value=0.064 Score=26.84 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=20.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 5299799998399994899999997135
Q 000830 407 IPAGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 407 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
-.+...+++|||+|+||||.+--|+..+
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999899998999998899999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.073 Score=26.38 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHCCCCEEEEECCCCHHHHCC
Q ss_conf 967999999999861399888982767899989899-9999999870897599983691354304
Q 000830 522 SGGQKQRIAISRAIVKNPSILLLDEATSALDAESEN-SVQEALDRVMVGRTTVVVAHRLSTIRNA 585 (1265)
Q Consensus 522 SgGqkqrialARal~~~~~ililDe~ts~lD~~~~~-~i~~~l~~~~~~~t~i~itH~~~~~~~~ 585 (1265)
...++..+..+...+.++++++++=.-..-+..... ...+.+.....++.+|++....+.....
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~ 128 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET 128 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHH
T ss_conf 52024789999999874133201102565420345554445554201410102046544433558
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.85 E-value=0.0098 Score=33.21 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=23.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 2997999983999948999999971357
Q 000830 408 PAGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 408 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
|+|-.++|.|++||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.78 E-value=0.0088 Score=33.56 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.76 E-value=0.007 Score=34.32 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=15.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 79999839999489999999713579
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
+.++|+|++|||||||+.-|.+.+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.76 E-value=0.012 Score=32.58 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4895999984999985789999833687
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
++|..|.|+|.+||||||+.+.|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.74 E-value=0.014 Score=31.97 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
Q ss_conf 99998399994899999997135798536
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 440 (1265)
.++|+|++|+|||||++.|.|.-.-..|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.027 Score=29.80 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 998889827678999898999999999870897599983691354
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (1265)
Q Consensus 538 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 582 (1265)
+.+++++||+-. +.......+.+.+.....+..+|++|++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.018 Score=31.17 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=34.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHH
Q ss_conf 99998499998578999983368799737999895068999787724328981478888233889
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYE 1112 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIre 1112 (1265)
.|||.|++||||||+.+.|..+..-..+ ..++.+|++|.+..+...++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHH
T ss_conf 9999689999876899999999730468-----------------99659995215689845888
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.09 Score=25.69 Aligned_cols=125 Identities=18% Similarity=0.279 Sum_probs=65.1
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHH--------HCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCC
Q ss_conf 412235995299799998399994899999997--------135798536998994179999688854106884677654
Q 000830 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIE--------RFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEPALF 470 (1265)
Q Consensus 399 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~--------g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 470 (1265)
+=+++++. +.+....|.||+.+||||+++.+. |.+-|-+- ..+ +--..+|
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~-a~~--------------------~~~d~I~ 88 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-VEI--------------------GPIDRIF 88 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEE--------------------CCCCEEE
T ss_pred CCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC-EEC--------------------CCCHHHE
T ss_conf 64057988-9953999954673136899998799999987297674176-661--------------------3442023
Q ss_pred CC-CHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 02-38998604999999999999999912899996196542110039999899679999999998613998889827678
Q 000830 471 AT-TIRENILYGKDDATMEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATS 549 (1265)
Q Consensus 471 ~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ililDe~ts 549 (1265)
.. ...|++.-|.... ..|+.+..+. ++ -..+..++|+||...
T Consensus 89 ~~~~~~d~~~~~~S~F-~~E~~~~~~i------l~------------------------------~~~~~sLvliDE~~~ 131 (234)
T d1wb9a2 89 TRVGAADDLASGRSTF-MVEMTETANI------LH------------------------------NATEYSLVLMDEIGR 131 (234)
T ss_dssp EEEC-----------C-HHHHHHHHHH------HH------------------------------HCCTTEEEEEESCCC
T ss_pred EEECCCCCCCCCHHHH-HHHHHHHHHH------HH------------------------------HCCCCCEEEECCCCC
T ss_conf 4874675343653189-9999999999------97------------------------------454660885322235
Q ss_pred CCCHHHHHHHHH-HHHHHC-C-CCEEEEECCCCHHH
Q ss_conf 999898999999-999870-8-97599983691354
Q 000830 550 ALDAESENSVQE-ALDRVM-V-GRTTVVVAHRLSTI 582 (1265)
Q Consensus 550 ~lD~~~~~~i~~-~l~~~~-~-~~t~i~itH~~~~~ 582 (1265)
+=++.....+.. .+..+. + +..+++.||.....
T Consensus 132 gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 132 GTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 877456667898764543204544289852468776
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.012 Score=32.64 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999983999948999999971357
Q 000830 412 IVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
++||.|++||||||+.+.|...+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.52 E-value=0.016 Score=31.53 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=25.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4895999984999985789999833687
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
|+|-.|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.47 E-value=0.013 Score=32.33 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.++|+|.+|+||||+++.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.46 E-value=0.015 Score=31.83 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 997999983999948999999971357
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
..+++.|.|++||||||+.+.|...+.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.46 E-value=0.0086 Score=33.66 Aligned_cols=25 Identities=36% Similarity=0.701 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9799998399994899999997135
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
-+.++|.|++|||||||++.|+..+
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3289998999998999999999984
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.014 Score=32.03 Aligned_cols=27 Identities=41% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 299799998399994899999997135
Q 000830 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 408 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
..++++.|.|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.34 E-value=0.02 Score=30.84 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999984999985789999833687
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
.+.|.|.|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.013 Score=32.20 Aligned_cols=27 Identities=37% Similarity=0.414 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489599998499998578999983368
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.25 E-value=0.11 Score=25.01 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=34.4
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHH
Q ss_conf 4998888726768999898999999999980--8965999924911442
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLM--RKRTTIIVAHRLSTIK 1219 (1265)
Q Consensus 1173 ~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~--~~~TvI~IaHRl~ti~ 1219 (1265)
.+..++++||.-++-|++....+-.++-+.+ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.19 E-value=0.11 Score=24.94 Aligned_cols=88 Identities=20% Similarity=0.210 Sum_probs=51.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCH
Q ss_conf 48959999849999857899998336879973799989506899978772432898147888823388996039999998
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASE 1123 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~d 1123 (1265)
+.-+.+-++|++||||||+++-++.- .|.+.++. ++++. .
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~~----------------------------~ 51 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLGS----------------------------W 51 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHCS----------------------------H
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHHH----------------------------H
T ss_conf 99989999899999899999999976----59789760--------77778----------------------------8
Q ss_pred HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 89999999941388898187876641269889899359999-99999861499888872
Q 000830 1124 GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQR-VAIARAVLKNPEILLLD 1181 (1265)
Q Consensus 1124 eei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQr-ialARALl~~p~ILiLD 1181 (1265)
+.+.+.++ ..|..|.+..+. ..+.+..+|++ +.+|+..=-+..++.+|
T Consensus 52 ~~~~~~~~--------~~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 52 QRCVSSCQ--------AALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 89999999--------999779995551--76799999999999998558887999948
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.11 Score=24.89 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=72.0
Q ss_pred CCEEEEEEEEECCC----CCCCCCCCCEEEEEECC-CEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCC
Q ss_conf 61899968898999----99843210105998489-599998499998578999983--------368799737999895
Q 000830 1016 GTIELRGVHFSYPS----RPEVVIFKDFNLKVRAG-KSMALVGQSGSGKSTVLSLIL--------RFYDPTAGKVMVDGI 1082 (1265)
Q Consensus 1016 g~I~f~~Vsf~Y~~----~~~~~vL~~isl~I~~G-e~vaIVG~SGsGKSTL~~lL~--------rl~~p~~G~I~idG~ 1082 (1265)
+.+++++. ++|- ..+..|=+|+ .+.++ ..+-|.||+.|||||+++.+. |++-|.+- -.+
T Consensus 10 ~~l~i~~~--rHPlle~~~~~~~VpNdi--~l~~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~-a~~--- 81 (234)
T d1wb9a2 10 PGIRITEG--RHPVVEQVLNEPFIANPL--NLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-VEI--- 81 (234)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEE--EECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEE---
T ss_pred CCEEEEEE--ECCEEECCCCCCCCCEEE--EECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC-EEC---
T ss_conf 96899973--787797446998264057--9889953999954673136899998799999987297674176-661---
Q ss_pred CCCCCCHHHHHCCCEEEECCCCCC-CCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 068999787724328981478888-2338899603999999889999999941388898187876641269889899359
Q 000830 1083 DIKRLNLKSLRKHIALVQQEPALF-ATSIYENILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ 1161 (1265)
Q Consensus 1083 di~~~~l~~lR~~i~~VpQd~~LF-~gTIreNl~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQ 1161 (1265)
-| -..+| .-...|++.-+.... ..|+.+.. ..++
T Consensus 82 ----------------~~-~d~I~~~~~~~d~~~~~~S~F-~~E~~~~~------~il~--------------------- 116 (234)
T d1wb9a2 82 ----------------GP-IDRIFTRVGAADDLASGRSTF-MVEMTETA------NILH--------------------- 116 (234)
T ss_dssp ----------------CC-CCEEEEEEC-----------C-HHHHHHHH------HHHH---------------------
T ss_pred ----------------CC-CHHHEEEECCCCCCCCCHHHH-HHHHHHHH------HHHH---------------------
T ss_conf ----------------34-420234874675343653189-99999999------9997---------------------
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEEECCCHHH
Q ss_conf 9999999986149988887267689998989999999-99980--896599992491144
Q 000830 1162 KQRVAIARAVLKNPEILLLDEATSALDVESERVVQQA-LQRLM--RKRTTIIVAHRLSTI 1218 (1265)
Q Consensus 1162 rQrialARALl~~p~ILiLDEaTSaLD~~te~~i~~~-L~~~~--~~~TvI~IaHRl~ti 1218 (1265)
-..+..++++||.-++-++.....+-.+ ++... .++.+++.||-....
T Consensus 117 ---------~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 117 ---------NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp ---------HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred ---------HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf ---------454660885322235877456667898764543204544289852468776
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.047 Score=27.91 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998888726768999898999999999980896599992491144
Q 000830 1174 NPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTI 1218 (1265)
Q Consensus 1174 ~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti 1218 (1265)
+.+++++||+-. +.......+.+.+.+....+..|+++++++-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.09 E-value=0.016 Score=31.57 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999984999985789999833687
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
++|+|.|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.0078 Score=33.95 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 997999983999948999999971357
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
+|.++.++|++||||||+.+.|+..+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.91 E-value=0.021 Score=30.55 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCE
Q ss_conf 9799998399994899999997135798536
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 440 (1265)
.++++|.|++||||||+++.|...+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889998999989899999999999876998
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.91 E-value=0.024 Score=30.19 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 299799998399994899999997135
Q 000830 408 PAGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 408 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
|+|-.+.|+||.||||||..+.|+..|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.91 E-value=0.021 Score=30.67 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999849999857899998336879
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDP 1072 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p 1072 (1265)
.|||.|++||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.89 E-value=0.021 Score=30.68 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 7999983999948999999971357
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
..+.|.|++||||||+++.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.87 E-value=0.13 Score=24.50 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=33.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEECCCCCHHHHHHHEEEE
Q ss_conf 999983999948999999971357--9853699899417999968885410688
Q 000830 412 IVALVGGSGSGKSTVISLIERFYE--PLSGEILLDGNNIKGLDLKWLRQQIGLV 463 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v 463 (1265)
.++|+|+.|+|||||+..|+..-. ...|++. +|....+..+.+...++.+-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~ 56 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVR 56 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEE
T ss_conf 999994889809999999999709755306622-22113562698887387687
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.86 E-value=0.018 Score=31.08 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
.++++|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.84 E-value=0.019 Score=31.01 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=25.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 59999849999857899998336879973799989
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1081 (1265)
..+.|+|++||||||+++.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.84 E-value=0.02 Score=30.80 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 599998499998578999983368799
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDPT 1073 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p~ 1073 (1265)
..++|+|++|||||||+.-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.022 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=17.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9799998399994899999997135
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+.+.|+||||+||+||.+.|....
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.77 E-value=0.012 Score=32.39 Aligned_cols=41 Identities=32% Similarity=0.269 Sum_probs=28.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCC--CEEEECCE
Q ss_conf 952997999983999948999999971357985--36998994
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLS--GEILLDGN 446 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~--G~i~~~g~ 446 (1265)
.-++|.++.+.|.|||||||+.+.|...+.... -.+.+||.
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 5899869999899999989999999988777427508997536
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.76 E-value=0.025 Score=30.04 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=27.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 4895999984999985789999833687997379998
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVD 1080 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1080 (1265)
|+|-++.|+||.||||||+.+.|..-| |-..++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~ 33 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA 33 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 996389998999998899999999986----985775
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.73 E-value=0.018 Score=31.23 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 5999984999985789999833687997379
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKV 1077 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1077 (1265)
+.|+|.|++||||||+++.|...+......+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 8899989999898999999999998769986
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.72 E-value=0.024 Score=30.17 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.024 Score=30.14 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEE
Q ss_conf 935999999999861499888872676899989899-99999999808965999924911442028799994988989
Q 000830 1158 SGGQKQRVAIARAVLKNPEILLLDEATSALDVESER-VVQQALQRLMRKRTTIIVAHRLSTIKNADQISVIESGKIIE 1234 (1265)
Q Consensus 1158 SgGQrQrialARALl~~p~ILiLDEaTSaLD~~te~-~i~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vl~~G~ive 1234 (1265)
...+...+..+...++++++++++=.-..-+...+. ...+.++....++.+|++....+........--...-.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~ 141 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIR 141 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 520247899999998741332011025654203455544455542014101020465444335588798727996799
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.61 E-value=0.016 Score=31.58 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHHC
Q ss_conf 999839999489999999713
Q 000830 413 VALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+||+|++++|||||++.|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.60 E-value=0.023 Score=30.37 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 99983999948999999971357
Q 000830 413 VALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
+.|+|||||||+||++.|....+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.58 E-value=0.019 Score=30.93 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.011 Score=32.71 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895999984999985789999833687
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
+|-.|-++|++||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.031 Score=29.25 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=30.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-------------CCCEEEECCCCCCCCCHHHHHC
Q ss_conf 959999849999857899998336879-------------9737999895068999787724
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFYDP-------------TAGKVMVDGIDIKRLNLKSLRK 1094 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~~p-------------~~G~I~idG~di~~~~l~~lR~ 1094 (1265)
...+.|+||||+||+||++.|++-++- ..| ..||+|.-=++.+...+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~--E~~G~dY~Fvs~~~F~~ 62 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD--EENGKNYYFVSHDQMMQ 62 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-----CCBTTTBEECCHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCC--CCCCCCCEEEEHHHHHH
T ss_conf 7719999989999999999999709767652300166899986--45576540531465455
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.54 E-value=0.024 Score=30.23 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99799998399994899999997135
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+..+++|+||+||||||+.+.|+..|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.52 E-value=0.15 Score=24.06 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 997999983999948999999971357
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
...++++|||+|+||||.+--|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.51 E-value=0.046 Score=27.95 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9599998499998578999983368
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+=+|||+|++|+|||||++.|++--
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.46 E-value=0.087 Score=25.80 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 99888982767899989899999999987089759998369135
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLST 581 (1265)
Q Consensus 538 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 581 (1265)
+.+++++||.- .+.......+.+.+....+...++++++....
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHH
T ss_conf 71899996632-00023789999886311200232012670877
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.40 E-value=0.028 Score=29.59 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|++|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.029 Score=29.53 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=30.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCC
Q ss_conf 999984999985789999833687997379998950689997877243289814788882
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFA 1107 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~ 1107 (1265)
.|||.|++||||||+.+.|...+.... .+ .-...+.++++|.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~-------~~-------~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE-------VD-------YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG-------SC-------GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC-------CC-------CCCCCEEEEECCCCCCC
T ss_conf 999989997879999999999964101-------34-------57884399934653224
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.33 E-value=0.047 Score=27.88 Aligned_cols=29 Identities=41% Similarity=0.809 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99799998399994899999997135798
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYEPL 437 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~ 437 (1265)
++..++++||+|+||||.+--|+..+...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~ 33 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 33 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 97799998999998899999999999977
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.024 Score=30.18 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 799998399994899999997135
Q 000830 411 KIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+.+.++||+||||||+.+.|+..+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.24 E-value=0.16 Score=23.74 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
-+.+.||+|+|||++++.+++.+
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.24 E-value=0.034 Score=29.03 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 997999983999948999999971357985369989
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~ 444 (1265)
+-..+.|+||+||||||+.+.|+..| |-+.++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 97289998999999899999999985----990885
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.21 E-value=0.016 Score=31.64 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 97999983999948999999971357985369
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i 441 (1265)
.-.++|.|+.|+|||||+..|.+.+....-++
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~v 85 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 85 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 32897438999989999999999997569833
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.18 E-value=0.036 Score=28.76 Aligned_cols=24 Identities=46% Similarity=0.757 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999983999948999999971357
Q 000830 412 IVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
.++|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.18 E-value=0.032 Score=29.22 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 895999984999985789999833687997379998
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVD 1080 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1080 (1265)
+...|.|+||.||||||+.+.|..-| |-+.++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.10 E-value=0.03 Score=29.39 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9998399994899999997135
Q 000830 413 VALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+.|+|||||||+|+.+.|...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.03 Score=29.45 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999984999985789999833687
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
..|-|+|++||||||+.++|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.034 Score=29.03 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|.+++|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.05 E-value=0.028 Score=29.67 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
+|+|||++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.03 E-value=0.049 Score=27.75 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999985789999833687
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.02 E-value=0.02 Score=30.81 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHHC
Q ss_conf 999839999489999999713
Q 000830 413 VALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
++|+|.+++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.92 E-value=0.026 Score=29.88 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+|.|+|++||||||+.+.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.92 E-value=0.034 Score=29.01 Aligned_cols=28 Identities=43% Similarity=0.644 Sum_probs=24.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 5299799998399994899999997135
Q 000830 407 IPAGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 407 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
++++.++.|+||+||||||+.+.|+..|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.90 E-value=0.034 Score=28.99 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.86 E-value=0.037 Score=28.70 Aligned_cols=45 Identities=33% Similarity=0.628 Sum_probs=30.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC-------------CCCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 99984999985789999833687-------------997379998950689997877243
Q 000830 1049 MALVGQSGSGKSTVLSLILRFYD-------------PTAGKVMVDGIDIKRLNLKSLRKH 1095 (1265)
Q Consensus 1049 vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR~~ 1095 (1265)
|.|+|||||||+||++.|+.-.+ |..|+ .+|+|..-++.+.....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~~ 61 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHHHH
T ss_conf 99989999998999999997488662477764268999997--57843243248899998
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.80 E-value=0.039 Score=28.53 Aligned_cols=111 Identities=19% Similarity=0.273 Sum_probs=63.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-EECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 2997999983999948999999971357985369-989941799996888541068846776540238998604999999
Q 000830 408 PAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDDAT 486 (1265)
Q Consensus 408 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~ 486 (1265)
.++-.+.+.||+||||||.+..++...+.....| ++. +|. -+..+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE---------------------dPi----------E~~~~~~- 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE---------------------DPI----------EFDIDGI- 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE---------------------SSC----------CSCCSSS-
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC---------------------CCC----------CCCCCCC-
T ss_conf 41054898767877744779998666257874699962---------------------674----------3456788-
Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999991289999619654211003999989967999999999861399888982767899989899999999987
Q 000830 487 MEEITRAAKLSEAMSFISNLPERFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESENSVQEALDRV 566 (1265)
Q Consensus 487 ~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~ 566 (1265)
.++.+.+ ..|+.---++..++=.+|||++..|.. |.++.....++ .
T Consensus 204 -----------------------~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a---a 249 (401)
T d1p9ra_ 204 -----------------------GQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA---S 249 (401)
T ss_dssp -----------------------EEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH---H
T ss_pred -----------------------CEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHH---H
T ss_conf -----------------------7026558-----767799999999984138889845768---75999999999---7
Q ss_pred CCCCEEEEECCCCHHHHC
Q ss_conf 089759998369135430
Q 000830 567 MVGRTTVVVAHRLSTIRN 584 (1265)
Q Consensus 567 ~~~~t~i~itH~~~~~~~ 584 (1265)
..|..|+..-|--+....
T Consensus 250 ~tGhlV~tTlHa~~a~~~ 267 (401)
T d1p9ra_ 250 LTGHLVMSTLHTNTAVGA 267 (401)
T ss_dssp HTTCEEEEEECCSSSHHH
T ss_pred HCCCEEEEEECCCCHHHH
T ss_conf 249858998336766766
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.76 E-value=0.19 Score=23.25 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.++++|...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.094 Score=25.54 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.70 E-value=0.038 Score=28.57 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 7999983999948999999971357
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
.+++++|.+||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.68 E-value=0.029 Score=29.55 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 997999983999948999999971357
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
+++.++|-|+.||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.021 Score=30.61 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
.++++|++++|||||++.|.+.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999889999899999998589
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.60 E-value=0.031 Score=29.32 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99799998399994899999997135
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+.-+++++|++|+|||||++.+.+..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.55 E-value=0.04 Score=28.41 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++|.|++||||||+++.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.52 E-value=0.056 Score=27.28 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 979999839999489999999713579853699899
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 445 (1265)
+.-+.++||+|||||.|++.+++.+.. --+.+++
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCC
T ss_conf 866999899998888999998621322--1000344
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.44 E-value=0.039 Score=28.51 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=59.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHH
Q ss_conf 95999984999985789999833687997379998950689997877243289814788882338899603999999889
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGE 1125 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~dee 1125 (1265)
-..+.|+||.||||||+++.|..-| |-+.|+.- +-+|..+ .+...-....+++-..-+ ....+..
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~-~~~~~~~ 72 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEG-QIVPQEI 72 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTT-CCCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCC-CCCCCHH
T ss_conf 7289998999999899999999985----99088535-------8999886---201017889988764000-0232036
Q ss_pred HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999413888981878766412698898993599999999986149988887267
Q 000830 1126 VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183 (1265)
Q Consensus 1126 i~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILiLDEa 1183 (1265)
........-..... ..-+..+-++ +-....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~~~~----~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVK----ANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHH----TTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHC----CCCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 78999999886400----3777535404---313689999999861545543125798
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.41 E-value=0.043 Score=28.18 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.36 E-value=0.068 Score=26.66 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=23.7
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 13998889827678999898999999999870897599983691354
Q 000830 536 VKNPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (1265)
Q Consensus 536 ~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 582 (1265)
....+++|+|-.. .. .+.+..+.+.+.+. ++.+++|-...+..
T Consensus 133 ~~~~d~~l~~~~~-~~-~~~d~~l~~~l~~~--~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 133 FYEYDFFIIISAT-RF-KKNDIDIAKAISMM--KKEFYFVRTKVDSD 175 (400)
T ss_dssp GGGCSEEEEEESS-CC-CHHHHHHHHHHHHT--TCEEEEEECCHHHH
T ss_pred HHCCEEEEEECCC-CC-CHHHHHHHHHHHHC--CCCEEEEEECCCCC
T ss_conf 3226599996588-88-78899999999976--99879997086321
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.07 Score=26.57 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=24.9
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 95299799998399994899999997135
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
-+++|+.+.|.||+||||||++.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.07 Score=26.55 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98489599998499998578999983368
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
-+++|+.+-|.|++||||||+..-++.-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.21 E-value=0.044 Score=28.15 Aligned_cols=42 Identities=33% Similarity=0.510 Sum_probs=27.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC-------------CCCCEEEECCCCCCCCCHHHH
Q ss_conf 99984999985789999833687-------------997379998950689997877
Q 000830 1049 MALVGQSGSGKSTVLSLILRFYD-------------PTAGKVMVDGIDIKRLNLKSL 1092 (1265)
Q Consensus 1049 vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~l 1092 (1265)
|.|+|||||||+||.+.|...++ |..|+ .+|.|..-++.+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f 57 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMM 57 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--CCCCEEEEEEHHHH
T ss_conf 99999999999999999997488760577788545898987--66720478646678
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.13 E-value=0.059 Score=27.11 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=26.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 79999839999489999999713579853699899
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 445 (1265)
..+.+.||+||||||+++.|++.+.. +-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 79998897998899999999998651--5489832
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.12 E-value=0.049 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
++.++|++|+|||||++-+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.06 E-value=0.1 Score=25.23 Aligned_cols=33 Identities=30% Similarity=0.295 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4122359952997999983999948999999971
Q 000830 399 IFDKFCLDIPAGKIVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 399 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g 432 (1265)
.++...+.+ .|.-+.+.|+||+||||+...+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.05 E-value=0.052 Score=27.53 Aligned_cols=21 Identities=52% Similarity=0.852 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
++||.|+.||||||+++.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.99 E-value=0.058 Score=27.20 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+|+++|++|+||||+++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.97 E-value=0.032 Score=29.23 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 79999839999489999999713579
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
-+++|.|+|||||||+.+.+...+..
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~ 30 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRR 30 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 89999899978099999999999715
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.96 E-value=0.079 Score=26.12 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=26.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 489599998499998578999983368799737
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK 1076 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1076 (1265)
.++-.+-+.|||||||||.+..+++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.93 E-value=0.084 Score=25.94 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=34.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCC
Q ss_conf 799998399994899999997135798536998994179999688854106884677
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKGLDLKWLRQQIGLVNQEP 467 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 467 (1265)
+-+.++||+|||||-|++.|+++++.. =+..+...++ ..|||..+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEE---------ECCEEECCH
T ss_conf 647998999988999999999873898--8986255114---------111110444
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.92 E-value=0.057 Score=27.24 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHC
Q ss_conf 999839999489999999713
Q 000830 413 VALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+||+|+..+|||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.92 E-value=0.058 Score=27.20 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999983999948999999971357
Q 000830 412 IVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
.++|-||+||||||..+.|+..|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.066 Score=26.76 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 29979999839999489999999713579
Q 000830 408 PAGKIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 408 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
++|.+++|-|+.||||||+++.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.73 E-value=0.054 Score=27.40 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9799998399994899999997135
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.-+++|-|+.||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6199988999988899999999870
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.72 E-value=0.058 Score=27.17 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+++++|++|+|||||++.+.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.058 Score=27.20 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
++.|+||+||||||..+.|+..|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.68 E-value=0.027 Score=29.73 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=31.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC-CC-CCCEEEECCCCCCC
Q ss_conf 489599998499998578999983368-79-97379998950689
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRFY-DP-TAGKVMVDGIDIKR 1086 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p-~~G~I~idG~di~~ 1086 (1265)
++|..|-+.|.|||||||+.+.|..-+ +. ..-.+.+||-+++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 998699998999999899999999887774275089975367887
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.66 E-value=0.06 Score=27.07 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999985789999833687
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
.|+|-||+||||||+.++|..-|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.59 E-value=0.05 Score=27.66 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=14.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999984999985789999833687
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
.-+|||+|+.|||||||+..|.+.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 32897438999989999999999997
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.56 E-value=0.054 Score=27.40 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+.|+|++||||||+.+.|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.55 E-value=0.058 Score=27.15 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 799998399994899999997135
Q 000830 411 KIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+.+.++|++||||||+.+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.52 E-value=0.056 Score=27.32 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 59999849999857899998336879973799989
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1081 (1265)
+.+-++|++||||||+.+.|..-+. --++|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg----~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG----YEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT----CEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC----CCEEEH
T ss_conf 9889988999988999999999949----987865
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.50 E-value=0.062 Score=26.95 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999849999857899998336879
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDP 1072 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p 1072 (1265)
..|.+||++||||||+++.|.+.+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 89999899999999999999999974
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.46 E-value=0.073 Score=26.40 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+|+++|++|+|||||++.|.|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.13 Score=24.42 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=17.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7999983999948999999971
Q 000830 411 KIVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g 432 (1265)
-+++++|++|+|||||++-+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.40 E-value=0.046 Score=28.00 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895999984999985789999833687
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.33 E-value=0.065 Score=26.81 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+.|+||+||||||+.+.|+..|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.075 Score=26.31 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=57.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 99998499998578999983368799737999895068999787724328981478888233889960399999988999
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVI 1127 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~deei~ 1127 (1265)
+|.|+||.||||||..+.|..-| |-..++- -+-+|..+ .+....+...+.+.+.-+ ...+|+.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~-~~v~d~~~~ 67 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEG-KIVPVEITI 67 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTT-CCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCC-CCCCCCHHH
T ss_conf 99997999999899999999986----9926768-------89999988---762046899999997069-721134036
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCE-EEEECC
Q ss_conf 99999413888981878766412698898993599999999986149--988-887267
Q 000830 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKN--PEI-LLLDEA 1183 (1265)
Q Consensus 1128 ~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~--p~I-LiLDEa 1183 (1265)
..+... +........ .-+..+.+ | +.-.+.|...+.+.+-.. +.+ +++|.+
T Consensus 68 ~~~~~~-~~~~~~~~~-~~~~~~~~-g--~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 68 SLLKRE-MDQTMAANA-QKNKFLID-G--FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHH-HHHHHHHCT-TCCEEEEE-S--CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHH-HCCCCHHHH-CCCCEEEC-C--CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 788876-412100011-24511101-1--030489999986442105543389962476
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.27 E-value=0.067 Score=26.68 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
.|+|||++|+|||||++.|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=91.22 E-value=0.067 Score=26.68 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+.|+||.||||||+.+.|+..|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.22 E-value=0.081 Score=26.06 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.19 E-value=0.11 Score=25.12 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.18 E-value=0.049 Score=27.73 Aligned_cols=117 Identities=20% Similarity=0.199 Sum_probs=65.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 84895999984999985789999833687997379998950689997877243289814788882338899603999999
Q 000830 1043 VRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGAS 1122 (1265)
Q Consensus 1043 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~ 1122 (1265)
++.+..|-|.||.||||||+.+.|..-| |-..++.-+ -+|..+. .. .....++.+.+.-+ ...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~~---~~-~~~~~~~~~~~~~~-~~~~ 68 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEVS---SG-SARGKMLSEIMEKG-QLVP 68 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHHH---HT-CHHHHHHHHHHTTT-CCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHHH---HH-HHHHHHHHHHHHHC-CCCC
T ss_conf 4678289998999998799999999986----984683347-------8999998---76-76514567777631-3776
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8899999999413888981878766412698898993599999999986149988887267
Q 000830 1123 EGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183 (1265)
Q Consensus 1123 deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILiLDEa 1183 (1265)
++.+...+.. .+...+...+..+-+ .+..-..|--.+.+.+.....++.+|.+
T Consensus 69 ~~~~~~~~~~-----~l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 69 LETVLDMLRD-----AMVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHH-----HHHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHEEEEEHHH-----HHHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 2224410245-----664032235660243---1110157899999983775200003331
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.14 E-value=0.11 Score=24.96 Aligned_cols=44 Identities=32% Similarity=0.475 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC
Q ss_conf 89599998499998578999983368799737999895068999
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLN 1088 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~ 1088 (1265)
++..+++|||+|+||||.+.=|...+.-..-+|.+=..|.....
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g 48 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA 48 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 97799998999998899999999999977990799981366654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.14 E-value=0.051 Score=27.59 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+.|.||+||||||+.+.|...|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.11 E-value=0.085 Score=25.90 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+|+++|++|+|||||++.|++--
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.07 E-value=0.058 Score=27.18 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
++.|.||.||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.05 E-value=0.08 Score=26.08 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+|.|+|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.02 E-value=0.078 Score=26.19 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999983999948999999971357
Q 000830 412 IVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
+++|.||+||||+|..+.|+..|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.89 E-value=0.085 Score=25.88 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+|.|+|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.84 E-value=0.064 Score=26.85 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999849999857899998336879973799989
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1081 (1265)
.+.|+|++||||||+.+.|...+ |--++|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 39998999998899999999983----9987836
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.83 E-value=0.2 Score=23.06 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.71 E-value=0.1 Score=25.26 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.69 E-value=0.088 Score=25.76 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
.+||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.67 E-value=0.089 Score=25.74 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 79999839999489999999713
Q 000830 411 KIVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+.++|+|+.|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.64 E-value=0.075 Score=26.32 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 79999839999489999999713579
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
+++.|.|++||||||+++.|...+.-
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.62 E-value=0.12 Score=24.68 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 79999839999489999999713579
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
..+.+.||+|+||||++++++..+..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.098 Score=25.40 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 48959999849999857899998336879
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRFYDP 1072 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1072 (1265)
++|..|+|.|+-||||||++++|..-+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.60 E-value=0.021 Score=30.61 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
.++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.60 E-value=0.099 Score=25.38 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 9979999839999489999999713579
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
+|.++++-|+.||||||+++.|...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.59 E-value=0.0043 Score=35.98 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 12235995299799998399994899999997135
Q 000830 400 FDKFCLDIPAGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 400 l~~i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+++.++.+.+| ++.|+|++||||||++.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 70279974998-08998899998799999999996
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.56 E-value=0.097 Score=25.43 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+++|-|+.||||||+...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.55 E-value=0.067 Score=26.68 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 997999983999948999999971357
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
+-.++++|||+|+||||.+--|+..+.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 997999989999998999999999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.2 Score=23.03 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.46 E-value=0.16 Score=23.71 Aligned_cols=28 Identities=32% Similarity=0.247 Sum_probs=21.5
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9952997999983999948999999971
Q 000830 405 LDIPAGKIVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 405 ~~i~~g~~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+---.|.-+.+.|+||+||||++..+..
T Consensus 9 ~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 9 LVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999999999980899998999999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=90.41 E-value=0.12 Score=24.84 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 9999839999489999999713579853
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEPLSG 439 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G 439 (1265)
.+.+.||+|+||||++++++..+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.35 E-value=0.11 Score=24.90 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8959999849999857899998336879
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYDP 1072 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1072 (1265)
+|..|+|-|+-||||||+++.|...++.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.34 E-value=0.11 Score=25.03 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 9979999839999489999999713579
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
+|.++++-|+.||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.33 E-value=0.1 Score=25.33 Aligned_cols=21 Identities=62% Similarity=0.817 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++|+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.17 E-value=0.097 Score=25.43 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 59999849999857899998336879973799989506
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI 1084 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1084 (1265)
..+.++||+|+|||.|+++|.+.... --+.+|+-++
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~ 85 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF 85 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCCCC
T ss_conf 66999899998888999998621322--1000344330
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.15 E-value=0.13 Score=24.35 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8959999849999857899998336879
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYDP 1072 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1072 (1265)
+|..|+|-|.-||||||++++|....+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.12 E-value=0.13 Score=24.56 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.3
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 952997999983999948999999971
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g 432 (1265)
-+++|+.+.|.|++||||||+..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.11 E-value=0.1 Score=25.24 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+.++||+||||||..+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.08 E-value=0.13 Score=24.37 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=27.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 5999984999985789999833687997379998950
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGID 1083 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1083 (1265)
.-+-++||+||||||+++.|.+.+.. +-+.+++-+
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~d~ 67 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDNDT 67 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECTHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEECHH
T ss_conf 79998897998899999999998651--548983289
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.08 E-value=0.077 Score=26.24 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9998399994899999997135
Q 000830 413 VALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+.++|++||||||+.++|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.06 E-value=0.092 Score=25.62 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999984999985789999833687
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
.-.|+|-|..||||||++++|.+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 61999889999888999999998707
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.06 E-value=0.0036 Score=36.55 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=27.1
Q ss_pred CCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 1010599848959999849999857899998336
Q 000830 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1036 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
+++.++.+.+| .+.|+|+|||||||++.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 70279974998-0899889999879999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.06 E-value=0.22 Score=22.64 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.05 E-value=0.1 Score=25.34 Aligned_cols=110 Identities=21% Similarity=0.193 Sum_probs=51.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 99998499998578999983368799737999895068999787724328981478888233889960399999988999
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGEVI 1127 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~deei~ 1127 (1265)
++.|+|+.||||||+.+.|..-|.. ..++.-| -+|.... ...-....+++-+.-+. ...++.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~----~~i~~~~-------llr~~~~----~~~~~~~~i~~~~~~g~-~~~d~~v~ 65 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI----PQISTGD-------MLRAAVK----SGSELGKQAKDIMDAGK-LVTDELVI 65 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC----CEEEHHH-------HHHHHHH----HTCTTTGGGHHHHHHTC-CCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC----CEECHHH-------HHHHHHC----CCCHHHHHHHHHHHCCC-CCCCHHHH
T ss_conf 8999879999989999999998699----5551014-------7677550----39858999999997699-87116399
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE-EECC
Q ss_conf 9999941388898187876641269889899359999999998614998888-7267
Q 000830 1128 EAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILL-LDEA 1183 (1265)
Q Consensus 1128 ~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILi-LDEa 1183 (1265)
..+. +.+.. ++.-+..+-+ |..-+. .|--++... ..+|+++| ||=|
T Consensus 66 ~~~~-----~~~~~-~~~~~g~i~~-g~pr~~--~~~~~~~~~-~~~~~~vi~L~~~ 112 (179)
T d1e4va1 66 ALVK-----ERIAQ-EDCRNGFLLD-GFPRTI--PQADAMKEA-GINVDYVLEFDVP 112 (179)
T ss_dssp HHHH-----HHHTS-GGGGGCEEEE-SCCCSH--HHHHHHHHT-TCCCSEEEEEECC
T ss_pred HHHH-----HHHCC-CCCCCCEEEC-CCCCCH--HHHHHHHHC-CCCCEEEEEECCC
T ss_conf 9999-----85225-2101663422-445305--776554440-6870399984462
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=90.05 E-value=0.12 Score=24.75 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||.++|++|+|||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.11 Score=24.89 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999985789999833687
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
.|+|-||.||||||+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.04 E-value=0.15 Score=24.07 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 984895999984999985789999833
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
-+++|+.+-|.|++||||||+..-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.03 E-value=0.068 Score=26.64 Aligned_cols=26 Identities=38% Similarity=0.471 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999849999857899998336879
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDP 1072 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p 1072 (1265)
+.+.|.|++||||||+++.|...+.-
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.00 E-value=0.12 Score=24.77 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
.|+++|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.97 E-value=0.11 Score=25.09 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999985789999833687
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
++.++|++||||||+.++|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.95 E-value=0.11 Score=24.91 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
.|||+|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.94 E-value=0.32 Score=21.45 Aligned_cols=29 Identities=31% Similarity=0.547 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999984999985789999833-----68799737
Q 000830 1048 SMALVGQSGSGKSTVLSLILR-----FYDPTAGK 1076 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~ 1076 (1265)
||+++|.+|+|||||++-+.+ -|.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 8999998997989999999709998763761331
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.93 E-value=0.12 Score=24.63 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
+++|||++|+|||||++.+.+=
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.88 E-value=0.14 Score=24.24 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9799998399994899999997135
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.-.++|.|+.|+|||||+..+...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=89.88 E-value=0.062 Score=26.94 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.75 E-value=0.14 Score=24.22 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=32.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCE-EEECCE
Q ss_conf 95299799998399994899999997135798536-998994
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGE-ILLDGN 446 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~-i~~~g~ 446 (1265)
-+++|.++.+.||+||||||++.-++.......|. +.+|..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 966735899805777478999999999987089879998654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.68 E-value=0.36 Score=21.04 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=18.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 97999983999948999999971357
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
...++++||+|+||||.+--|+..+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.65 E-value=0.14 Score=24.21 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9799998399994899999997135
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.=.++|+||.||||||+.+.|+..|
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2169998899998799999999997
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.64 E-value=0.12 Score=24.82 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.61 E-value=0.12 Score=24.70 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9979999839999489999999713
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+.=+++++|.+|||||||++-+.+.
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8579999999998989999999668
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.57 E-value=0.1 Score=25.19 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 79999839999489999999713
Q 000830 411 KIVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
=+++|||-.-+|||||++.|.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.56 E-value=0.12 Score=24.80 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+.|.||+||||||+.+.|+..|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.37 Score=20.93 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=30.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 98889827678999898999999999870897599983691354
Q 000830 539 PSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (1265)
Q Consensus 539 ~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 582 (1265)
.+++++||+=. |+......+.+.+.....+...|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 87999978110-89999999999985689886999973885636
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.43 E-value=0.2 Score=22.93 Aligned_cols=28 Identities=32% Similarity=0.257 Sum_probs=18.8
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9952997999983999948999999971
Q 000830 405 LDIPAGKIVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 405 ~~i~~g~~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+-.-.|.-+.|.|+||+||||+...+..
T Consensus 10 ~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 10 LVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999999999980899999999999998
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.41 E-value=0.14 Score=24.14 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999849999857899998336
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
.|++++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.40 E-value=0.098 Score=25.40 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=22.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489599998499998578999983368
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
++.-++++||++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.16 Score=23.75 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9529979999839999489999999713
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
-+++|+.+.|.|++|||||++..-++..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9768979999889988788999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.24 E-value=0.18 Score=23.28 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+++++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.15 E-value=0.16 Score=23.76 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 95299799998399994899999997
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIE 431 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~ 431 (1265)
=+++|+.+.|.|++||||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.09 E-value=0.14 Score=24.32 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+||+|++.+|||||++.|.+..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.09 E-value=0.14 Score=24.23 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.07 E-value=0.34 Score=21.16 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 979999839999489999999713579853
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFYEPLSG 439 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G 439 (1265)
...+.|.||+|+||||+++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.04 E-value=0.15 Score=23.94 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
++.|.|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.92 E-value=0.14 Score=24.26 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|++|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.26 Score=22.06 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=88.80 E-value=0.083 Score=25.97 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999857899998336
Q 000830 1049 MALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1049 vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.80 E-value=0.19 Score=23.16 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=22.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 98489599998499998578999983
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLIL 1067 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1067 (1265)
-+++|+.+-|.|++||||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.78 E-value=0.21 Score=22.89 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.9
Q ss_pred ECCCCEEEEECCCCCCHHHHHH-HHH
Q ss_conf 5299799998399994899999-997
Q 000830 407 IPAGKIVALVGGSGSGKSTVIS-LIE 431 (1265)
Q Consensus 407 i~~g~~~~ivG~sGsGKSTl~~-~l~ 431 (1265)
+++|+++.|.|++|+|||+++. ++.
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 96983999994799999999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.17 Score=23.59 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.74 E-value=0.18 Score=23.32 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 5299799998399994899999997135
Q 000830 407 IPAGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 407 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+++|+++.|.|++|+|||+++.-++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.72 E-value=0.16 Score=23.73 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99799998399994899999997135
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+..+.|.||+|+|||||++-++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.68 E-value=0.27 Score=21.98 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999983999948999999971357
Q 000830 412 IVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
+++++|.+|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.68 E-value=0.16 Score=23.66 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+++||...||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.63 E-value=0.34 Score=21.20 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.54 E-value=0.19 Score=23.21 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999849999857899998336
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.54 E-value=0.18 Score=23.44 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=24.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 984895999984999985789999833
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
-|++|+.+-|.|++|||||++..-+.-
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.54 E-value=0.16 Score=23.85 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.46 E-value=0.31 Score=21.54 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|.+|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.45 E-value=0.11 Score=25.01 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=28.2
Q ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 359952997999983999948999999971357
Q 000830 403 FCLDIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 403 i~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
.=+.+.+|+..+|+|++|+|||+|+.-+.+...
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 125645787556867999887899999999775
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.42 E-value=0.31 Score=21.56 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=27.1
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2101059984895999984999985789999833
Q 000830 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1035 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
.++.-.+.+ .|.-+.|.|+||+||||++..|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.42 E-value=0.19 Score=23.10 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
.|||+|..||||||..+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.41 E-value=0.23 Score=22.54 Aligned_cols=161 Identities=14% Similarity=0.169 Sum_probs=72.5
Q ss_pred CCCCEEE-EEECCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHH
Q ss_conf 2101059-98489599998499998578999-983368799737999895068999787724328981478888233889
Q 000830 1035 IFKDFNL-KVRAGKSMALVGQSGSGKSTVLS-LILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYE 1112 (1265)
Q Consensus 1035 vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~-lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIre 1112 (1265)
-|+++-- -+++|+.+-|.|++|+|||+++. ++..........+.+... +.+.... +.
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~---e~~~~~~------------------~~ 72 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF---EETPQDI------------------IK 72 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES---SSCHHHH------------------HH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHH------------------HH
T ss_conf 79885568996983999994799999999999999999856887420126---6799999------------------99
Q ss_pred HHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCC--CCCEEEEECCCCCCCH
Q ss_conf 9603999999889999999941388898187876641269889899359-999999998614--9988887267689998
Q 000830 1113 NILYGKDGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQ-KQRVAIARAVLK--NPEILLLDEATSALDV 1189 (1265)
Q Consensus 1113 Nl~~g~~~~~deei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQ-rQrialARALl~--~p~ILiLDEaTSaLD~ 1189 (1265)
...-. ....++..+.. .. .... .....+.-..++... ...+.-.+..++ +|+++++|--++-.+.
T Consensus 73 ~~~~~--~~~~~~~~~~~---~~-~~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~ 140 (242)
T d1tf7a1 73 NARSF--GWDLAKLVDEG---KL-FILD------ASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ 140 (242)
T ss_dssp HHGGG--TCCHHHHHHTT---SE-EEEE------CCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred HHHHC--CCCHHHHHHHC---CH-HHHH------HCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99984--99848988714---30-2444------2103354444302458999999999988631222002078899876
Q ss_pred ----HHHH-HHHHHHHHH-CCCCEEEEEECCCHH---------HH-CCCEEEEEE
Q ss_conf ----9899-999999998-089659999249114---------42-028799994
Q 000830 1190 ----ESER-VVQQALQRL-MRKRTTIIVAHRLST---------IK-NADQISVIE 1228 (1265)
Q Consensus 1190 ----~te~-~i~~~L~~~-~~~~TvI~IaHRl~t---------i~-~~DrI~vl~ 1228 (1265)
.... .+...++.. ..++|+++++|.... .. .+|.|+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 141 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 0572678999999999998639716884210255422246762335362999988
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.41 E-value=0.19 Score=23.14 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=29.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-EECCEE
Q ss_conf 952997999983999948999999971357985369-989941
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-LLDGNN 447 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i-~~~g~~ 447 (1265)
.++++..+.+.||+|+|||++.+.+++++. |.+ .+++.+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~ 189 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPL 189 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCC
T ss_conf 899767699989999888999999999859---9789997742
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.37 E-value=0.17 Score=23.48 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
.+||||..-+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.32 E-value=0.21 Score=22.77 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
|+++||++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.27 E-value=0.22 Score=22.71 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 984895999984999985789999833
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
-+++|+.+-|.|++|+||||+..-+.-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.27 E-value=0.16 Score=23.69 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+.++||.||||||+.+.|+-.|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.26 E-value=0.36 Score=20.97 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
++.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.25 E-value=0.17 Score=23.62 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|+.|+|||||++-+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.24 E-value=0.17 Score=23.51 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 799998399994899999997135
Q 000830 411 KIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.+++|.|+.||||||+++.|...+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 899997999988999999999868
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=88.21 E-value=0.19 Score=23.25 Aligned_cols=111 Identities=21% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCCCCHHH
Q ss_conf 95999984999985789999833687997379998950689997877243289814788882338899603999999889
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDGASEGE 1125 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~~~dee 1125 (1265)
.-++.|+|+.||||||+.+.|..-|. -..++-- +-+|..+ ++..-+...+.+.+..+. ...++.
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~g----~~~is~g-------dllr~~~----~~~~~~~~~~~~~~~~~~-~v~~~~ 69 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHFE----LKHLSSG-------DLLRDNM----LRGTEIGVLAKTFIDQGK-LIPDDV 69 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHBC----CEEEEHH-------HHHHHHH----HTTCHHHHHHHHHHHTTC-CCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC----CEEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHHH-HCCCHH
T ss_conf 21699988999987999999999979----8687189-------9999998----740156689998763664-133034
Q ss_pred HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999413888981878766412698898993599999999986149988887267
Q 000830 1126 VIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEA 1183 (1265)
Q Consensus 1126 i~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILiLDEa 1183 (1265)
+....+.. +... ....- +-+ | +..-..|.-.+.+. +.-..++.||-+
T Consensus 70 ~~~l~~~~-----~~~~-~~~~~-ild-G--fPr~~~q~~~l~~~-~~~~~vi~L~v~ 116 (189)
T d2ak3a1 70 MTRLVLHE-----LKNL-TQYNW-LLD-G--FPRTLPQAEALDRA-YQIDTVINLNVP 116 (189)
T ss_dssp HHHHHHHH-----HHHH-TTSCE-EEE-S--CCCSHHHHHHHHTT-CCCCEEEEEECC
T ss_pred HHHHHHHH-----HHHH-HHCCC-CCC-C--CCCHHHHHHHHHHC-CCCEEEEEEECC
T ss_conf 45445554-----4212-10584-244-5--21000678876315-753299997244
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.19 E-value=0.35 Score=21.09 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.10 E-value=0.2 Score=23.00 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
.|||.|++|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.04 E-value=0.16 Score=23.65 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|++|+|||||++-+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.03 E-value=0.29 Score=21.71 Aligned_cols=26 Identities=15% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89599998499998578999983368
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
.+..+.|.|+.|+|||||++-+++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=87.97 E-value=0.16 Score=23.66 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 99983999948999999971357
Q 000830 413 VALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
+.+.||+|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=0.2 Score=22.95 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+++++|.+|+|||||++-+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.84 E-value=0.25 Score=22.20 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 959999849999857899998336879973
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFYDPTAG 1075 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1075 (1265)
...+-|.||+|+||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.83 E-value=0.26 Score=22.05 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=23.2
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 9529979999839999489999999713579
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
..++|.++++.|+-||||||+.+.+++-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=87.78 E-value=0.19 Score=23.25 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=87.76 E-value=0.19 Score=23.17 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
.|||+|+..+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=87.75 E-value=0.27 Score=22.00 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999985789999833687
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
.+-+.||.|+|||++++.+.+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.68 E-value=0.44 Score=20.34 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf 999984999985789999833-----687997379
Q 000830 1048 SMALVGQSGSGKSTVLSLILR-----FYDPTAGKV 1077 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~I 1077 (1265)
||.++|.+|+|||||++-+.. -|.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.59 E-value=0.074 Score=26.35 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=28.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCC
Q ss_conf 9999849999857899998336879973799989506899978772432898147888
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPAL 1105 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~L 1105 (1265)
.|||.|.|||||||+.+.|...+... | -..++|+||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.56 E-value=0.17 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 999983999948999999971357
Q 000830 412 IVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
.+.+.||+|+||||++++++..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.48 E-value=0.2 Score=22.95 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|++|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.41 E-value=0.14 Score=24.13 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895999984999985789999833687
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
+...+++|||+|+||||.+.=|...+.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999988999999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.37 E-value=0.17 Score=23.45 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=26.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 48959999849999857899998336879973799989506
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI 1084 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1084 (1265)
++-..+++|||+|+||||.+.=|...+.-..-+|.+=..|.
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 47 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 47 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99979999899999989999999999997799479982321
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.32 E-value=0.2 Score=22.92 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.26 E-value=0.23 Score=22.52 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48959999849999857899998336
Q 000830 1044 RAGKSMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1044 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
++.-+|.+||+.|||||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.18 E-value=0.2 Score=23.02 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|.+|+|||||++-+...
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.17 E-value=0.43 Score=20.44 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.15 E-value=0.23 Score=22.56 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=24.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 599998499998578999983368799737999895
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGI 1082 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~ 1082 (1265)
..+-+.||+|+||||+++++++-...+ -+.+++.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~ 86 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNAS 86 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH--HHCCCCC
T ss_conf 449998799998889999999998751--2013443
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.15 E-value=0.22 Score=22.64 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=27.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 98489599998499998578999983368799
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPT 1073 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1073 (1265)
..+||..+.+.|+=||||||+++.+.+-+-..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 57998299996687765889999987642234
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.15 E-value=0.23 Score=22.58 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=4.8
Q ss_pred CCCEEEEECC
Q ss_conf 9988898276
Q 000830 538 NPSILLLDEA 547 (1265)
Q Consensus 538 ~~~ililDe~ 547 (1265)
...+..+||-
T Consensus 249 ~~~~~~~dei 258 (443)
T d1g41a_ 249 QNGIVFIDEI 258 (443)
T ss_dssp HHCEEEEETG
T ss_pred CCCCCCCCHH
T ss_conf 2675554223
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.10 E-value=0.31 Score=21.56 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 799998399994899999997135
Q 000830 411 KIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.-+.+.||+|+|||++++.+++..
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 646876699888308999999874
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.05 E-value=0.28 Score=21.90 Aligned_cols=73 Identities=23% Similarity=0.463 Sum_probs=46.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-EECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHCCCCCC
Q ss_conf 952997999983999948999999971357985369-9899417999968885410688467765402389986049999
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-LLDGNNIKGLDLKWLRQQIGLVNQEPALFATTIRENILYGKDD 484 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~ 484 (1265)
-++.|.++.+.||+||||||++.-++.......|.+ .+|... .++++..++ ++. + -+|+.+..++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~Gv---D--------~d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGV---D--------TDSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTC---C--------GGGCEEECCS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHHH-HCC---C--------HHHEEEECCC
T ss_conf 8666336999648874889999999998754898899998976--679999998-099---8--------8995896699
Q ss_pred CCHHHHHHH
Q ss_conf 999999999
Q 000830 485 ATMEEITRA 493 (1265)
Q Consensus 485 ~~~~~~~~~ 493 (1265)
+.+++.+.
T Consensus 122 -~~E~~~~~ 129 (269)
T d1mo6a1 122 -TGEQALEI 129 (269)
T ss_dssp -SHHHHHHH
T ss_pred -CHHHHHHH
T ss_conf -89999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.03 E-value=0.26 Score=22.15 Aligned_cols=54 Identities=28% Similarity=0.503 Sum_probs=37.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-EECCEECCCCCHHHHHHHEEE
Q ss_conf 952997999983999948999999971357985369-989941799996888541068
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEI-LLDGNNIKGLDLKWLRQQIGL 462 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~ 462 (1265)
-++.|.++.+.||+||||||+...++...+...|.+ .+|.. ..++++.++ ++|.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE--~~~~~~~a~-~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE--HALDPVYAR-ALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS--CCCCHHHHH-HTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHHHH-HHCC
T ss_conf 866754789805876522799999999997079989999887--658999999-8289
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.95 E-value=0.24 Score=22.32 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999849999857899998336879973799989
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDG 1081 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1081 (1265)
++.+.|+.||||||+.+.|.--| |-..++.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 99998999999899999999996----9945834
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.89 E-value=0.22 Score=22.71 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=14.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 959999849999857899998336
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
.-++||.|+-|+|||||+..|.+.
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 159861179988899999999998
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.76 E-value=0.25 Score=22.27 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 9999839999489999999713579
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
+++|-|..||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.76 E-value=0.23 Score=22.53 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.75 E-value=0.1 Score=25.21 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9599998499998578999983368
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
.-+|+|+|++++|||||++.|.+-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.73 E-value=0.22 Score=22.71 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|++|+|||||++-+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.68 E-value=0.23 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=33.3
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCC
Q ss_conf 99848959999849999857899998336879973-79998950
Q 000830 1041 LKVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG-KVMVDGID 1083 (1265)
Q Consensus 1041 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~idG~d 1083 (1265)
=-+++|..+-|.|++||||||+...+..-..-..| -+++|...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99667358998057774789999999999870898799986544
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.63 E-value=0.2 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9998399994899999997135
Q 000830 413 VALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+.+.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=86.55 E-value=0.28 Score=21.91 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
.|||+|+..||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.54 E-value=0.22 Score=22.60 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9799998399994899999997135
Q 000830 410 GKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
=..++|+||.++|||||++.|.|..
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 7999988999997999999980998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.51 E-value=0.47 Score=20.09 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 101059984895999984999985789999833
Q 000830 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1036 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
++.--+ --.|.-+.|+|+||+||||++..|..
T Consensus 5 lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 899999-99999999980899998999999998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.49 E-value=0.28 Score=21.87 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
|+.+||.+|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=86.43 E-value=0.21 Score=22.82 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 9999849999857899998336879973799989506
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDPTAGKVMVDGIDI 1084 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1084 (1265)
.+-+.||.|+||||+++++..-+.... +.++|.+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~ 71 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVL 71 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCCC
T ss_conf 489879999738899999985038885--33257442
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.34 E-value=0.23 Score=22.46 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 799998399994899999997135
Q 000830 411 KIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
=.++|||...+|||||+++|.+--
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 379997899998999999997789
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=86.33 E-value=0.17 Score=23.53 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7999983999948999999971
Q 000830 411 KIVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g 432 (1265)
=+++++|++|+|||||++-+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999999999988999988733
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.22 E-value=0.26 Score=22.09 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.12 E-value=0.23 Score=22.46 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 799998399994899999997135
Q 000830 411 KIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
.-+.+.||+|||||++++.++...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.09 E-value=0.25 Score=22.23 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999849999857899998336879
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYDP 1072 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~p 1072 (1265)
.|+|-|.-||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.09 E-value=0.3 Score=21.64 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
.+++||...|||||++++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=86.05 E-value=0.19 Score=23.10 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHH-HHCCCCCCCEEEEC
Q ss_conf 979999839999489999999-71357985369989
Q 000830 410 GKIVALVGGSGSGKSTVISLI-ERFYEPLSGEILLD 444 (1265)
Q Consensus 410 g~~~~ivG~sGsGKSTl~~~l-~g~~~~~~G~i~~~ 444 (1265)
...+.|+|++|||||++++.+ ...+....+-+.+|
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 265899907999689999999999984799889996
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.01 E-value=0.28 Score=21.86 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=23.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 5999984999985789999833687997379998
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDPTAGKVMVD 1080 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1080 (1265)
..|||.|.-||||||+++.|..-+ |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.96 E-value=0.29 Score=21.73 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=24.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 7999983999948999999971357985369989
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYEPLSGEILLD 444 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~ 444 (1265)
....++||+|+|||.|++.|+..+.. .-+.+|
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d 84 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFD 84 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC--CEEEEC
T ss_conf 58999778750069999999863367--706741
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.78 E-value=0.25 Score=22.19 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHC
Q ss_conf 499888872676899989899999999998089659999249114420
Q 000830 1173 KNPEILLLDEATSALDVESERVVQQALQRLMRKRTTIIVAHRLSTIKN 1220 (1265)
Q Consensus 1173 ~~p~ILiLDEaTSaLD~~te~~i~~~L~~~~~~~TvI~IaHRl~ti~~ 1220 (1265)
.+..++++||.- .+.......+...+.+....+..|.++++.+.+..
T Consensus 108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CCCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHH
T ss_conf 872288614344-31214789876411247764478861487665657
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.76 E-value=0.57 Score=19.47 Aligned_cols=32 Identities=25% Similarity=0.155 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 99998399994899999997135798536998
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEPLSGEILL 443 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~ 443 (1265)
.+.|=|+-|+||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.72 E-value=0.27 Score=21.98 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=85.71 E-value=0.31 Score=21.48 Aligned_cols=176 Identities=20% Similarity=0.245 Sum_probs=94.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCC-CCCCCHHHHHCCCCCCCCH-
Q ss_conf 99998499998578999983368--7997379998950689997877243289814788-8823388996039999998-
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY--DPTAGKVMVDGIDIKRLNLKSLRKHIALVQQEPA-LFATSIYENILYGKDGASE- 1123 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~--~p~~G~I~idG~di~~~~l~~lR~~i~~VpQd~~-LF~gTIreNl~~g~~~~~d- 1123 (1265)
.+||+|..|+|||||+..|+..- ....|++. +|..+.+....+-.+.+++-+.-.. .+.+ .+-|+.. .|.+.|
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iD-tPGh~dF 80 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLD-APGYGDF 80 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEE-CCCSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEEC-CCCHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-2106880-6815543
Q ss_pred -HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHHH
Q ss_conf -89999999941388898187876641269889899359999999998614998888---72676899989899999999
Q 000830 1124 -GEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILL---LDEATSALDVESERVVQQAL 1199 (1265)
Q Consensus 1124 -eei~~al~~~~l~~~i~~Lp~Gldt~vge~G~~LSgGQrQrialARALl~~p~ILi---LDEaTSaLD~~te~~i~~~L 1199 (1265)
.+...+++.+...=+ .|. .-.....+-++.+-.|+. .+-|.+++ +|.+ + |.. ..+ +.+
T Consensus 81 ~~e~~~al~~~D~avl----------vvd-a~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~--~-~~~--~~l-~~~ 142 (267)
T d2dy1a2 81 VGEIRGALEAADAALV----------AVS-AEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG--G-DYY--ALL-EDL 142 (267)
T ss_dssp HHHHHHHHHHCSEEEE----------EEE-TTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC--C-CHH--HHH-HHH
T ss_pred HHHHHHHHCCCCCEEE----------EEE-CCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCC--C-CCH--HHH-HHH
T ss_conf 3556543124673389----------842-357742115788776554-044310133320222--2-101--234-468
Q ss_pred HHHCCCCEEEEEECC----CHHHHC--CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 998089659999249----114420--287999949889893393456202
Q 000830 1200 QRLMRKRTTIIVAHR----LSTIKN--ADQISVIESGKIIEQGTHSSLVEN 1244 (1265)
Q Consensus 1200 ~~~~~~~TvI~IaHR----l~ti~~--~DrI~vl~~G~ive~Gt~~eLl~~ 1244 (1265)
++.+....-+.+-.. ...+.+ ..+.+..++|.-.+.--|.++.+.
T Consensus 143 ~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~ 193 (267)
T d2dy1a2 143 RSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERER 193 (267)
T ss_dssp HHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHH
T ss_pred HHHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHHH
T ss_conf 887465867686002588326876247654899618987454077778999
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.68 E-value=0.59 Score=19.36 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||.+||++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.65 E-value=0.33 Score=21.26 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||+++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.61 E-value=0.29 Score=21.79 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999839999489999999713
Q 000830 412 IVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+++++|.+|+|||||++-+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=85.57 E-value=0.23 Score=22.57 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8959999849999857899998336879
Q 000830 1045 AGKSMALVGQSGSGKSTVLSLILRFYDP 1072 (1265)
Q Consensus 1045 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1072 (1265)
....+++|||+|+||||.+.=|...+.-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~ 38 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKK 38 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9989999899999989999999999997
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.55 E-value=0.29 Score=21.71 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|+.|+|||||++-+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.54 E-value=0.27 Score=21.96 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 79999839999489999999713
Q 000830 411 KIVALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
.+++++|++|+|||||++-+.+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.51 E-value=0.42 Score=20.45 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC
Q ss_conf 99998399994899999997--13579853
Q 000830 412 IVALVGGSGSGKSTVISLIE--RFYEPLSG 439 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~--g~~~~~~G 439 (1265)
++.++|.+|+|||||++-+. ..+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.43 E-value=0.26 Score=22.11 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=27.6
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1059984895999984999985789999833687
Q 000830 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1038 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
|.=+.|-+|++.+|+|++|+|||||+.-+.+-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.43 E-value=0.34 Score=21.21 Aligned_cols=21 Identities=48% Similarity=0.744 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
|+++||+.|+|||||++-+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.36 E-value=0.27 Score=22.01 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499998578999983368
Q 000830 1049 MALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1049 vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+-+.||+|+||||+++++.+-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.30 E-value=0.31 Score=21.46 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
.+++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.21 E-value=0.29 Score=21.76 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.20 E-value=0.31 Score=21.55 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.18 E-value=0.45 Score=20.24 Aligned_cols=28 Identities=36% Similarity=0.649 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999984999985789999833-----6879973
Q 000830 1048 SMALVGQSGSGKSTVLSLILR-----FYDPTAG 1075 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G 1075 (1265)
||+++|++|+|||||++.+.. -|.|+.|
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~ 37 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999799899999999980988986577410
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.17 E-value=0.35 Score=21.06 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.14 E-value=0.48 Score=20.04 Aligned_cols=28 Identities=39% Similarity=0.685 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999984999985789999833-----6879973
Q 000830 1048 SMALVGQSGSGKSTVLSLILR-----FYDPTAG 1075 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G 1075 (1265)
|+.+||.+|+|||||++-+.. -|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 999999899789999999973989876377310
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.13 E-value=0.33 Score=21.26 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=85.13 E-value=0.31 Score=21.55 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999984999985789999833687
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
+..+.+|||+|+||||.+.-|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.03 E-value=0.32 Score=21.41 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.88 E-value=0.35 Score=21.12 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=84.86 E-value=0.37 Score=20.89 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
++.++|++|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.81 E-value=0.64 Score=19.03 Aligned_cols=21 Identities=14% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||.++|..|+|||||++-+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.71 E-value=0.33 Score=21.27 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.65 E-value=0.5 Score=19.91 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=26.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCCCC
Q ss_conf 5999984999985789999833-----68799737-----99989506
Q 000830 1047 KSMALVGQSGSGKSTVLSLILR-----FYDPTAGK-----VMVDGIDI 1084 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~-----I~idG~di 1084 (1265)
-||+++|.+|+|||||++.+.. .|.|+.|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.57 E-value=0.39 Score=20.72 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
|+.+||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.55 E-value=0.23 Score=22.58 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|++|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=84.54 E-value=0.3 Score=21.57 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5999984999985789999833
Q 000830 1047 KSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
=++++||+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.51 E-value=0.39 Score=20.72 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||.++|.+|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.39 E-value=0.5 Score=19.86 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984999985789999833687
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFYD 1071 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~~ 1071 (1265)
||.++|.+|+|||||++.+.+-..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.35 E-value=0.33 Score=21.35 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=28.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 999983999948999999971357--98536998994179999688854106
Q 000830 412 IVALVGGSGSGKSTVISLIERFYE--PLSGEILLDGNNIKGLDLKWLRQQIG 461 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~ 461 (1265)
.++|+|+.|||||||+..|+-.-. ...|++. +|....+..+.+...+++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~s 58 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGIT 58 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEE-CCCEEEECCHHHHHCCCC
T ss_conf 999995898998999999999648534023365-184698565888751886
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.31 E-value=0.6 Score=19.27 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 101059984895999984999985789999833
Q 000830 1036 FKDFNLKVRAGKSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1036 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
++.-- ---.|.-|.|+|+||+||||+...|.+
T Consensus 6 ~H~~~-v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVL-VDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEE-EEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEE-EEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 88999-999999999980899999999999998
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.30 E-value=0.21 Score=22.77 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.24 E-value=0.37 Score=20.89 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.16 E-value=0.37 Score=20.95 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=27.4
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 599529979999839999489999999713579
Q 000830 404 CLDIPAGKIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 404 ~~~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
-+.+-+|++.+|+|++|+|||+|+.-+......
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~ 94 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK 94 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 256367887776679998989999999998876
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.16 E-value=0.43 Score=20.40 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
|+.++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.14 E-value=0.64 Score=19.08 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 5999984999985789999833-----68799737
Q 000830 1047 KSMALVGQSGSGKSTVLSLILR-----FYDPTAGK 1076 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~ 1076 (1265)
=++.++|.+|+|||||++-+.. .|+|+.|.
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~ 39 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED 39 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 79999998995989999999709888545763120
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.13 E-value=0.091 Score=25.67 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999849999857899998336
Q 000830 1048 SMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
+|+++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.10 E-value=0.32 Score=21.44 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=27.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 998889827678999898999999999870897599983691354
Q 000830 538 NPSILLLDEATSALDAESENSVQEALDRVMVGRTTVVVAHRLSTI 582 (1265)
Q Consensus 538 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 582 (1265)
+.+++++||.-.- .......+...+.........+++++..+-+
T Consensus 101 ~~kviiiDe~d~~-~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADSM-TAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGGS-CHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCCCC-CHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 3599998244323-2157787752011233333665314743021
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.09 E-value=0.52 Score=19.76 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHH-HHCCCCCCC
Q ss_conf 79999839999489999999-713579853
Q 000830 411 KIVALVGGSGSGKSTVISLI-ERFYEPLSG 439 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l-~g~~~~~~G 439 (1265)
-++.++|.+|+|||||++-+ .+.+.|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=84.08 E-value=0.61 Score=19.21 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCHHHHHHHHH-----CCCCCCCCE
Q ss_conf 599998499998578999983-----368799737
Q 000830 1047 KSMALVGQSGSGKSTVLSLIL-----RFYDPTAGK 1076 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~-----rl~~p~~G~ 1076 (1265)
-|+.++|.+|+|||||++.+. .-|.|+.|.
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 69999998995889999999729998654775343
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.07 E-value=0.43 Score=20.37 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||.+||.+|+|||||++-+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=83.84 E-value=0.33 Score=21.31 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=16.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999849999857899998336
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRF 1069 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl 1069 (1265)
..+-+.||+|+|||++++.+..-
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 07998896999889999998620
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.67 E-value=0.43 Score=20.38 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
|+.++|.+|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.66 E-value=0.43 Score=20.36 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHHCC
Q ss_conf 9998399994899999997135
Q 000830 413 VALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
+|++|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.52 E-value=0.44 Score=20.31 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
|+.++|.+|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.48 E-value=0.58 Score=19.39 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
Q ss_conf 99998399994899999997135798536
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEPLSGE 440 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 440 (1265)
++.++|..|+|||||++-+.....|+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 99999999988899999884089797247
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.45 E-value=0.43 Score=20.42 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 79999839999489999999713579
Q 000830 411 KIVALVGGSGSGKSTVISLIERFYEP 436 (1265)
Q Consensus 411 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 436 (1265)
+.++|-|.-||||||+++.|...+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.34 E-value=0.4 Score=20.66 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999849999857899998336879
Q 000830 1047 KSMALVGQSGSGKSTVLSLILRFYDP 1072 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~rl~~p 1072 (1265)
+.|+|-|.-||||||++++|...+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.09 E-value=0.49 Score=19.95 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
|+.++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.07 E-value=0.39 Score=20.74 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=10.7
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 998499998578999983368
Q 000830 1050 ALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1050 aIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
-+.||.|+||||+++++.+.+
T Consensus 39 Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 39 LLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 988979987888999999984
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=82.96 E-value=0.54 Score=19.63 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 999983999948999999971357985369
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEPLSGEI 441 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i 441 (1265)
.++|=|+-|+||||+++.|...+......+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v 36 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRI 36 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 999988877889999999999873468856
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.80 E-value=0.57 Score=19.47 Aligned_cols=42 Identities=19% Similarity=0.345 Sum_probs=30.2
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEE
Q ss_conf 10599848959999849999857899998336-8799737999
Q 000830 1038 DFNLKVRAGKSMALVGQSGSGKSTVLSLILRF-YDPTAGKVMV 1079 (1265)
Q Consensus 1038 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-~~p~~G~I~i 1079 (1265)
|.-+.+-+||+++|.|.+|+|||||+.-+.+= ...+.+.+.+
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~ 102 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 102 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEE
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 1025636788777667999898999999999887617996999
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=82.78 E-value=0.65 Score=18.98 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=23.2
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 999839999489999999713579853699899
Q 000830 413 VALVGGSGSGKSTVISLIERFYEPLSGEILLDG 445 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 445 (1265)
+.++||+|+|||-+++.|+..++. .-+.+|-
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~ 101 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDA 101 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--CEEEHHH
T ss_conf 244189986378999999864435--3311122
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=82.64 E-value=0.39 Score=20.74 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=32.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCCCC
Q ss_conf 98489599998499998578999983368799737-999895068
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK-VMVDGIDIK 1085 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~ 1085 (1265)
.++++.++-++||.|+|||++++.|.++.. |. |.+++.+..
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~r 191 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLDR 191 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCCHH
T ss_conf 899767699989999888999999999859---978999774201
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.54 E-value=0.51 Score=19.83 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5999984999985789999833
Q 000830 1047 KSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
.||.++|.+|+|||||++-+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.51 E-value=0.46 Score=20.14 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.50 E-value=0.63 Score=19.11 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=24.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCC-CCCEEEEC
Q ss_conf 9999839999489999999713579-85369989
Q 000830 412 IVALVGGSGSGKSTVISLIERFYEP-LSGEILLD 444 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~~~-~~G~i~~~ 444 (1265)
...++||+|+|||.+++.|+..+.. ...-+.+|
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~ 88 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 88 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9999788862489999999998358875348873
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.50 E-value=0.39 Score=20.73 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=11.1
Q ss_pred EEEECCCCCCHHHHHHHHHHC
Q ss_conf 999839999489999999713
Q 000830 413 VALVGGSGSGKSTVISLIERF 433 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~ 433 (1265)
+.+.||.|+||||++++++..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889987755899999998
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.48 E-value=0.44 Score=20.33 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999983999948999999971
Q 000830 412 IVALVGGSGSGKSTVISLIER 432 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g 432 (1265)
+++++|++|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.41 E-value=0.55 Score=19.54 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.40 E-value=0.73 Score=18.61 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
|+.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.37 E-value=0.54 Score=19.61 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
|+.++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.95 E-value=0.36 Score=20.98 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 99983999948999999971357
Q 000830 413 VALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 413 ~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
..+.||+|+||||++++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.93 E-value=0.55 Score=19.59 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=13.3
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf 999986139988898276789998
Q 000830 530 AISRAIVKNPSILLLDEATSALDA 553 (1265)
Q Consensus 530 alARal~~~~~ililDe~ts~lD~ 553 (1265)
....|-...|.|+++||.=+-...
T Consensus 89 ~f~~A~~~~p~il~iDeid~l~~~ 112 (258)
T d1e32a2 89 AFEEAEKNAPAIIFIDELDAIAPK 112 (258)
T ss_dssp HHHHHHHTCSEEEEESSGGGTCCH
T ss_pred HHHHHHHCCCEEEEEHHHHHHCCC
T ss_conf 999998649949985211132257
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.91 E-value=0.56 Score=19.54 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
|+.++|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=81.84 E-value=0.37 Score=20.92 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99998399994899999997135
Q 000830 412 IVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 412 ~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
++.++|++|+|||||++-+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=81.82 E-value=0.53 Score=19.69 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998499998578999983368
Q 000830 1048 SMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
.|||+|...+|||||++.|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.80 E-value=0.6 Score=19.26 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999984999985789999833-----6879973
Q 000830 1048 SMALVGQSGSGKSTVLSLILR-----FYDPTAG 1075 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G 1075 (1265)
|+.++|.+|+|||||++-+.. -|.|+.|
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~ 37 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG 37 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999398999999982998864454200
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.68 E-value=0.61 Score=19.21 Aligned_cols=21 Identities=29% Similarity=0.630 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||.+||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=81.46 E-value=0.46 Score=20.17 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=22.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 952997999983999948999999971357
Q 000830 406 DIPAGKIVALVGGSGSGKSTVISLIERFYE 435 (1265)
Q Consensus 406 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 435 (1265)
..++| .+.++||+|+|||.+++.|++...
T Consensus 120 ~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 120 RYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 36886-388877998508899999999863
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.46 E-value=0.6 Score=19.25 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.40 E-value=0.49 Score=19.93 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.5
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 210105998489599998499998578999983368
Q 000830 1035 IFKDFNLKVRAGKSMALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1035 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+|+.++ .|=..|+|+|+.++|||||++.|++-.
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.30 E-value=0.6 Score=19.26 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||+++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.10 E-value=0.49 Score=19.95 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=47.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHCCCCCC
Q ss_conf 98489599998499998578999983368799737-99989506899978772432898147888823388996039999
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAGK-VMVDGIDIKRLNLKSLRKHIALVQQEPALFATSIYENILYGKDG 1120 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~~~l~~lR~~i~~VpQd~~LF~gTIreNl~~g~~~ 1120 (1265)
-++.|..+-+.|++|+||||+...+..-+.-..|. |+||... .++.+.++ ++++ | -+|+.+..+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~Gv---D--------~d~il~~~~- 120 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGV---D--------TDSLLVSQP- 120 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTC---C--------GGGCEEECC-
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHH-HHCC---C--------HHHEEEECC-
T ss_conf 8666336999648874889999999998754898899998976--67999999-8099---8--------899589669-
Q ss_pred CCHHHHHHHHH
Q ss_conf 99889999999
Q 000830 1121 ASEGEVIEAAK 1131 (1265)
Q Consensus 1121 ~~deei~~al~ 1131 (1265)
.+-|++.+.++
T Consensus 121 ~~~E~~~~~~~ 131 (269)
T d1mo6a1 121 DTGEQALEIAD 131 (269)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 98999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.05 E-value=0.65 Score=19.01 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC-C----CCCCCC
Q ss_conf 999984999985789999833-6----879973
Q 000830 1048 SMALVGQSGSGKSTVLSLILR-F----YDPTAG 1075 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r-l----~~p~~G 1075 (1265)
|+++||..|+|||||++-+.. - |+|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999198999999972999865465301
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.04 E-value=0.86 Score=18.06 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984999985789999833
Q 000830 1048 SMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
||.++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.04 E-value=0.88 Score=17.99 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5999984999985789999833
Q 000830 1047 KSMALVGQSGSGKSTVLSLILR 1068 (1265)
Q Consensus 1047 e~vaIVG~SGsGKSTL~~lL~r 1068 (1265)
=+++++|.+|+|||||++-+..
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.00 E-value=0.88 Score=17.98 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999984999985789999833-----68799737
Q 000830 1048 SMALVGQSGSGKSTVLSLILR-----FYDPTAGK 1076 (1265)
Q Consensus 1048 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~ 1076 (1265)
|+.++|.+|+|||||++-+.. -|.|+-|.
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~ 37 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999999995989999999729999865872010
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.95 E-value=0.58 Score=19.37 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99799998399994899999997135
Q 000830 409 AGKIVALVGGSGSGKSTVISLIERFY 434 (1265)
Q Consensus 409 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 434 (1265)
....++|+|..|.|||||++.+....
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 84089997799788899999999855
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.94 E-value=0.6 Score=19.29 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCCHHHHHHHH-HCCCCCCCCE
Q ss_conf 959999849999857899998-3368799737
Q 000830 1046 GKSMALVGQSGSGKSTVLSLI-LRFYDPTAGK 1076 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL-~rl~~p~~G~ 1076 (1265)
--|+-++|.+|+|||||++-+ .+-+.|+-|-
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 47799998999988999998950982788886
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=80.87 E-value=0.54 Score=19.66 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=37.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHHCCCEE
Q ss_conf 9848959999849999857899998336879973-79998950689997877243289
Q 000830 1042 KVRAGKSMALVGQSGSGKSTVLSLILRFYDPTAG-KVMVDGIDIKRLNLKSLRKHIAL 1098 (1265)
Q Consensus 1042 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~l~~lR~~i~~ 1098 (1265)
-++.|..+-|.|++||||||+...+..-..-..| -++||... .++.+. .+++++
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~-a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVY-ARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH-HHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHH-HHHHCC
T ss_conf 8667547898058765227999999999970799899998876--589999-998289
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.57 E-value=0.63 Score=19.08 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499998578999983368
Q 000830 1049 MALVGQSGSGKSTVLSLILRFY 1070 (1265)
Q Consensus 1049 vaIVG~SGsGKSTL~~lL~rl~ 1070 (1265)
+-++||||+|||.|++.|.+.+
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHC
T ss_conf 9997787500699999998633
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.26 E-value=0.68 Score=18.83 Aligned_cols=35 Identities=34% Similarity=0.457 Sum_probs=27.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
Q ss_conf 9599998499998578999983368------------7997379998
Q 000830 1046 GKSMALVGQSGSGKSTVLSLILRFY------------DPTAGKVMVD 1080 (1265)
Q Consensus 1046 Ge~vaIVG~SGsGKSTL~~lL~rl~------------~p~~G~I~id 1080 (1265)
+-++||||...+|||||+++|.+-- +|.-|.+.+.
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~ 56 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 56 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 73799978999989999999977898774789966703876899606
|