Citrus Sinensis ID: 000848

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250-----
MNNNNNNNSSSTPNPNANTNNKDSEEDLAAQPVETVIKPDKSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccEEEEEEEccccccccccccHHHHHcccccHHHccccccEEccccccccccccccccccEEEEEEEcccccccEEEEEEEcccccccEEEEEEcccccccEEEEEEccccEEEEEccccccccccccccccccHHHcccccEEEEEccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEEEccccEEEEEcccccccccccccEEEccccccccccccccccccHHcccccEEEEEcccccccEEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccEEEcccHHcccccccEEccccEEEEccccccccEEEEEEEEccccccccccccccccEEEEEEEEcccccEEEEEcccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHEEEcccccEEEEEEEcccEEEEEcccccccccEEEEccccccccccccccccccEEEEccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEcccccccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEEEcccccccccEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccEEEEcccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEcccEEEcHHHHHcccccccccccccccccccccHHHHHcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEHHHHccccccccccccccccccccccHHHHHHccccccccccccEEEEc
ccccccccccccccccccccccccHHcHccccEEEEEcccccccccHHHHHHHHHccccccccccccccccEEEEEEEcccccHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccEEEEEEEEcccccccEEEEEEcccccccEEEEEEcccEEEEEEccccccccEEEEcccHHHHHHHHHHHHHHHHHHcccccccEccccccccccccccHHHHHcccccccccccccEEEEEEEEccccEEEEccccccccccccccEEEccccccccccccHEEEEEEEEccccEEEEEEEcccccEEEEEEEcccccccEEEcccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcHHHHccccccccccccEEEEEEccccccEEEEEEEEEccccccccccccccccccEEEEEccccccEEEEccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHccccccEEEEEEcccEEEEEcccccccccEEEEccccccccccccccccccEEEcccccccEEEEEEEcccccccccccEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEcEEEEEEcccccccccHHHHHHccccHHHEEHHEHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccccccccEEccccccccccEEEEEccccEEEccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccEEccHHHHHHccccccccccccccccHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHcccccccHHHHHHHccccccEEEEEEcccccccEHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccEEEEc
mnnnnnnnssstpnpnantnnkdseedlaaqpvetvikpdksdtlsSAAAAEEeasaksddpmdedsvtpATVFCIRlkqprsnlqhkmsvpelcRNFSAVAWCGKLNAIACASetcaripssnantpfwipihiviperptecavfnviadcprdsvqfiewsptscpRALLIANFYGrvtiwtqpshgpanlvrdascwqrEHEWRQDIAVVTKWLsgvspyrwlsskstsplnakSIFEekflsqnsqtsdrwpnflCVCSVfssgsvqlnwsqwppsqngaaskwfptakgllgagpsgimaadviitdsgamhvagvpivnpsTVVVWEvtpgpgngfqaapktttsngvppslsppkwagfapLAAYLFSWQEYLLSEAKQgrkltdqnfsdaitlhcspvsnfsayvspeaaaqsaatttwgsgvtavafdptrggSVIAVVIVEgqymspydpdegpsitgwrvqrwessvqpVVLHqifgnptssfggqapmqtVWVSkvdtsiptsnfkihqlaaagptcdvwkttdsglekskivsfdpfdlpsdiRSLARIVYSAHGGEIAIALLRggvhifsgpnfapvdnyqisvgsaiaapafsstsccsasvwhdtnkdrtILKIIrvlppavpssqvkansSTWERAIAERFWWSLLVnvdwwdavgctqsaaEDGIVSLNSVIAVLdadfhslpsiqhrqqygpsldRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIesalinpsalvpdpwqasgetlsgidpeamAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAvtagtgsnrnmvasptqssatpaasqagqsgttsstgsTQMQAWVQGAIAKIsstndgvsnptsnpisgpssfmpisintgtfpgtpavrlIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANaqrnndanvqkpqvsapgkveeinsvpgkptsamvkldegqvaragqtvpgakgveegpagrpkmgfgnagqgytFEEVKVLFLILMDLCRRtaalshplpvsqvgssniqVRLHYIDGNYTVLPEVveaslgphmqnmprprgaDAAGLLLRElelhppaeewhrrnmfggpwsdpedvgpvddtpklsnwvdsvdvnssgnhdvyydshglwprkrrmserdaafglntSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQtaafaspgatnppnqndrEAWWISRwafgcpmcggtwvrvv
mnnnnnnnssstpnpnanTNNKDSEEDLAAQPVEtvikpdksdTLSSAAAAEEeasaksddpmdedSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLekskivsfdpfdlpsDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRvlppavpssqvkanssTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHavtagtgsnrnMVASPTQSSATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLAnaqrnndanvqkpqvsapgkveeinsvpgkpTSAMVKLDegqvaragqtvpgakgveegpagrpkMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALshplpvsqvgssnIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVdvnssgnhdvyydshglwpRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAfaspgatnppnQNDREAWWISRWAFGCPMCGGTWVRVV
MnnnnnnnssstpnpnantnnKDSEEDLAAQPVETVIKPDKSDTLssaaaaeeeasaKSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVasptqssatpaasqagqsgttsstgstqmqaWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDchflhrlcqlllfcfffrraqqPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLsnwvdsvdvnssgnhdvYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV
**********************************************************************ATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLS*************************DRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTP*************************KWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPS**VKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVT************************************************************************PISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQ*************************************************************************FGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEA*******************LLLREL***********************************NWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFA*************EAWWISRWAFGCPMCGGTWVRV*
*********************************************************************PATVFCIRLKQPR***Q*KMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYR******************************WPNFLCVCSVFSSGSVQLNWSQW*****GAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTT*******LSPPKWAGFAPLAAYLFSWQEYLLSE***********FSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS**GGQAPMQTVWVSKVDTSIPTSNFKIHQLAA********************VSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQH**QYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASH******************************************QAWVQGAIAKIS**************SGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPR****************************************************************************GYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHM*NMP***GADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVG*****************NSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTA*****************AWWISRWAFGCPMCGGTWVRVV
************************EEDLAAQPVETVIKP****************************VTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVS************WGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPA***********TWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNM****************************QMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV
******************************QPV***IKP***************************SVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWL************************TSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNF***********************KSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVT*****************************************W**************************SSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQ*************************GKPTSAMVKLDEGQVARAGQTVPGAKGV****AGRPKMGF***GQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDD****SNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV
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MNNNNNNNSSSTPNPNANTNNKDSEEDLAAQPVETVIKPDKSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1255 2.2.26 [Sep-21-2011]
F4JGZ11278 Mediator of RNA polymeras yes no 0.976 0.958 0.765 0.0
>sp|F4JGZ1|MED16_ARATH Mediator of RNA polymerase II transcription subunit 16 OS=Arabidopsis thaliana GN=MED16 PE=1 SV=1 Back     alignment and function desciption
 Score = 1905 bits (4935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 963/1258 (76%), Positives = 1060/1258 (84%), Gaps = 33/1258 (2%)

Query: 22   KDSEEDLAAQPVETVIKPD------KSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFC 75
            +  EE L  +  ET+   D      +   L  +   E+E    S   M+ D V+PATVFC
Sbjct: 30   EKEEEGLQQKQEETIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFC 89

Query: 76   IRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHI 135
            ++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSS ANTPFWIPIHI
Sbjct: 90   VKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPIHI 149

Query: 136  VIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLV 195
            +IPERPTECAVFNV+AD PRDSVQFIEWSPTSCPRALLIANF+GR+TIWTQP+ G ANLV
Sbjct: 150  LIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGSANLV 209

Query: 196  RDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDR 255
             DA+ WQ EHEWRQDIAVVTKWL+G SPYRWLSSK +S  NAKS FEEKFLSQ+S++S R
Sbjct: 210  HDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFEEKFLSQSSESSAR 269

Query: 256  WPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSG 315
            WPNFLCVCSVFSSGSVQ++WSQWP +Q   A KWF T KGLLGAGPSGIMAAD IITDSG
Sbjct: 270  WPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPSGIMAADAIITDSG 329

Query: 316  AMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLF 375
            AMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W GFAPLAAYLF
Sbjct: 330  AMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLF 389

Query: 376  SWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 435
            SWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV
Sbjct: 390  SWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 449

Query: 436  AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSF 495
            AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS+F
Sbjct: 450  AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNF 509

Query: 496  GGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLP 554
            GGQ P QTVWVS+VD SI PT +FK HQ+AAAGP+ D  K  DSG EK+  V FDPFDLP
Sbjct: 510  GGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKANKVVFDPFDLP 569

Query: 555  SDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCC 614
            SDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAIAAPAFS TSCC
Sbjct: 570  SDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCC 629

Query: 615  SASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVG 674
            SASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSLLV VDWWDAVG
Sbjct: 630  SASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSLLVGVDWWDAVG 689

Query: 675  CTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMV 734
            CTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLEGTNAQEVRAMV
Sbjct: 690  CTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMV 749

Query: 735  LDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYV 794
            LDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+PALV+SIQAYV
Sbjct: 750  LDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVDPALVSSIQAYV 809

Query: 795  DAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQ------ 848
            DAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V SPTQ++++PA  Q      
Sbjct: 810  DAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASSPATPQVFPDKS 869

Query: 849  ----AGQ-------SGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMP 897
                 GQ       + TT+S+GS+ +QAW+QGAIAKISS+NDG SN T++PISG  +FMP
Sbjct: 870  LYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDG-SNSTASPISGSPTFMP 928

Query: 898  ISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQ 957
            ISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCF  R ++ P      QRN D + QK Q
Sbjct: 929  ISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFP------QRNADVSSQKLQ 982

Query: 958  VSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQG 1017
              A  K+EE+NS   KPT A+ ++++ Q  R  Q   G KG++E  A   KMG GNAGQG
Sbjct: 983  TGATSKLEEVNS--AKPTPALNRIEDAQGFRGAQLGTGVKGIDENSARTTKMGSGNAGQG 1040

Query: 1018 YTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLG 1077
            YT+EEV+VLF ILMDLC+RT+ L+HPLP SQVGS NIQVRLHYIDGNYTVLPEVVEA+LG
Sbjct: 1041 YTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAALG 1100

Query: 1078 PHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWV 1137
            PHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRN+FGGP S+PED+   DD  KLSN +
Sbjct: 1101 PHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMILTDDVSKLSNSL 1160

Query: 1138 DSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVW 1197
            D  D N SG  D Y   H LWPRKRRMSERDAAFG NTSVGLGAYLGIMGSRRDVVTA W
Sbjct: 1161 DLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVGLGAYLGIMGSRRDVVTATW 1220

Query: 1198 KTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV 1255
            KTGLEGVWYKCIRCLRQT+AFASPGAT  PN N+RE WW SRW + CPMCGGTWVRVV
Sbjct: 1221 KTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERETWWTSRWVYCCPMCGGTWVRVV 1278
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the regulation of the circadian clock, in the control of flowering time, in freezing- and osmotic-stress tolerance and in both salicylic acid- and jasmonate-mediated defense gene expression.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1255
2555560011255 conserved hypothetical protein [Ricinus 0.997 0.997 0.861 0.0
4494578231220 PREDICTED: mediator of RNA polymerase II 0.947 0.974 0.846 0.0
3565462431244 PREDICTED: uncharacterized protein LOC10 0.935 0.943 0.832 0.0
2240792531328 predicted protein [Populus trichocarpa] 0.952 0.900 0.802 0.0
3565493571189 PREDICTED: uncharacterized protein LOC10 0.943 0.995 0.821 0.0
3583466651245 hypothetical protein MTR_084s0009 [Medic 0.953 0.961 0.803 0.0
3341863641267 sensitive to freezing 6 protein [Arabido 0.975 0.966 0.771 0.0
2402557521278 sensitive to freezing 6 protein [Arabido 0.976 0.958 0.765 0.0
4495263151143 PREDICTED: mediator of RNA polymerase II 0.878 0.965 0.838 0.0
2978096691219 hypothetical protein ARALYDRAFT_490126 [ 0.930 0.958 0.771 0.0
>gi|255556001|ref|XP_002519035.1| conserved hypothetical protein [Ricinus communis] gi|223541698|gb|EEF43246.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 2194 bits (5686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1080/1254 (86%), Positives = 1149/1254 (91%), Gaps = 2/1254 (0%)

Query: 4    NNNNNSSSTPNPNANTNNKDSEEDLAAQPVETVIKPDKSDT-LSSAAAAEEEASAKSDDP 62
            NN  +  S    +    NK+ EE+   Q +E V K   SD       ++EE++  K DDP
Sbjct: 2    NNQQHQQSQIVGSGTGGNKEPEEESVGQSLEIVAKGAGSDKPAGEPVSSEEDSVEKPDDP 61

Query: 63   MDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 122
            M+EDSV+PATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS
Sbjct: 62   MEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 121

Query: 123  SNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVT 182
            SNAN PFWIPIHIVIPERPTECAVFNVIAD PRDSVQFIEWSPTSCPRALLIANF+GR+T
Sbjct: 122  SNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRIT 181

Query: 183  IWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFE 242
            IWTQPS GP N+VRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKS+S  N+KS FE
Sbjct: 182  IWTQPSQGPVNMVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSSTNSKSTFE 241

Query: 243  EKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPS 302
            EKFLSQ SQTS RWPNFLCVCSVFSSGSVQL+WSQWPPS+  A  +WF T+KGLLGAGPS
Sbjct: 242  EKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSRTNATPEWFCTSKGLLGAGPS 301

Query: 303  GIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPP 362
            GIMAAD I+TDSGAMHVAGVPIVNPSTVVVWEVTPG G+GFQA PKT+ SNGVPPSL+PP
Sbjct: 302  GIMAADAIVTDSGAMHVAGVPIVNPSTVVVWEVTPGLGHGFQATPKTSISNGVPPSLNPP 361

Query: 363  KWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQS 422
             W+GFAPLAAYLFSWQEYL+SEAKQGRK TDQ+FS+ ++LHCSPVSNFSAYVSPEAAAQS
Sbjct: 362  NWSGFAPLAAYLFSWQEYLISEAKQGRKHTDQDFSNTVSLHCSPVSNFSAYVSPEAAAQS 421

Query: 423  AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPV 482
            AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS+QPV
Sbjct: 422  AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPV 481

Query: 483  VLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLE 541
            VLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIP T++FK HQ  +AGP  D  K +DSG+E
Sbjct: 482  VLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPPTNDFKNHQTVSAGPAPDARKASDSGVE 541

Query: 542  KSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGS 601
            K+K ++FDPFDLPSD+RSLARIVYSAHGGEIAIA LRGGVHIFSGPNF PVD+YQI+VGS
Sbjct: 542  KAKSLTFDPFDLPSDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTPVDSYQINVGS 601

Query: 602  AIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWW 661
            AIAAPAFSSTSCCSASVWHDT+KDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWW
Sbjct: 602  AIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWW 661

Query: 662  SLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRL 721
            SLLV VDWWDAVGCTQSAAED IVSLNSVIAVLDADFHSLPS QHRQQYGPSLDRIKCRL
Sbjct: 662  SLLVGVDWWDAVGCTQSAAEDNIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRL 721

Query: 722  LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMA 781
            LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVP+PWQASGETLSGIDPEAMA
Sbjct: 722  LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETLSGIDPEAMA 781

Query: 782  VEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSS 841
            VEP+LV SIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNR+MV SPTQS+
Sbjct: 782  VEPSLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRSMVTSPTQSA 841

Query: 842  ATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISIN 901
            A+PA SQ GQ+GTTSSTGSTQMQAWVQGAIAKISSTNDGVSN T NPISGPSSFMPISIN
Sbjct: 842  ASPATSQGGQNGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNATPNPISGPSSFMPISIN 901

Query: 902  TGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAP 961
            TGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRR Q PR +  AQR+ D N+QKPQ  AP
Sbjct: 902  TGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFIGVAQRSTDTNMQKPQSGAP 961

Query: 962  GKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFE 1021
            GKVEE NSV  KP  AMV+ DE Q AR GQ VPG KGVEEGPAGR ++G+GNAGQGYTFE
Sbjct: 962  GKVEEANSVSSKPAQAMVRSDEVQTARGGQLVPGGKGVEEGPAGRSRLGYGNAGQGYTFE 1021

Query: 1022 EVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQ 1081
            EVKVLFLILMDLCRRTAAL+HPLPVSQVGSSNIQVRLHYI+GNYTVLPEVVEASLGPHMQ
Sbjct: 1022 EVKVLFLILMDLCRRTAALAHPLPVSQVGSSNIQVRLHYINGNYTVLPEVVEASLGPHMQ 1081

Query: 1082 NMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVD 1141
            NMPRPRGADAAGLLLRELELHPP+EEWHRRNMFGGPWSDPED+   DDTP++S++ DS+D
Sbjct: 1082 NMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDITSADDTPRMSSYTDSLD 1141

Query: 1142 VNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGL 1201
             +S  N DVYY  +GLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGL
Sbjct: 1142 FSSLENCDVYYGVNGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGL 1201

Query: 1202 EGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV 1255
            EGVWYKCIRCLRQT+AFASPGATNPPNQNDREAWWISRWA+GCPMCGGTWVRVV
Sbjct: 1202 EGVWYKCIRCLRQTSAFASPGATNPPNQNDREAWWISRWAYGCPMCGGTWVRVV 1255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449457823|ref|XP_004146647.1| PREDICTED: mediator of RNA polymerase II transcription subunit 16-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356546243|ref|XP_003541539.1| PREDICTED: uncharacterized protein LOC100793949 [Glycine max] Back     alignment and taxonomy information
>gi|224079253|ref|XP_002305810.1| predicted protein [Populus trichocarpa] gi|222848774|gb|EEE86321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549357|ref|XP_003543060.1| PREDICTED: uncharacterized protein LOC100812938 [Glycine max] Back     alignment and taxonomy information
>gi|358346665|ref|XP_003637386.1| hypothetical protein MTR_084s0009 [Medicago truncatula] gi|355503321|gb|AES84524.1| hypothetical protein MTR_084s0009 [Medicago truncatula] Back     alignment and taxonomy information
>gi|334186364|ref|NP_001190676.1| sensitive to freezing 6 protein [Arabidopsis thaliana] gi|332657042|gb|AEE82442.1| sensitive to freezing 6 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|240255752|ref|NP_192401.5| sensitive to freezing 6 protein [Arabidopsis thaliana] gi|395406812|sp|F4JGZ1.1|MED16_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 16; AltName: Full=Protein SENSITIVE TO FREEZING 6 gi|332657041|gb|AEE82441.1| sensitive to freezing 6 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449526315|ref|XP_004170159.1| PREDICTED: mediator of RNA polymerase II transcription subunit 16-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297809669|ref|XP_002872718.1| hypothetical protein ARALYDRAFT_490126 [Arabidopsis lyrata subsp. lyrata] gi|297318555|gb|EFH48977.1| hypothetical protein ARALYDRAFT_490126 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1255
TAIR|locus:21353831278 SFR6 "AT4G04920" [Arabidopsis 0.946 0.929 0.752 0.0
DICTYBASE|DDB_G02791571284 med16 "putative mediator compl 0.095 0.093 0.283 8.6e-05
TAIR|locus:2135383 SFR6 "AT4G04920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4762 (1681.4 bits), Expect = 0., P = 0.
 Identities = 914/1215 (75%), Positives = 993/1215 (81%)

Query:    59 SDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCA 118
             S   M+ D V+PATVFC++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCA
Sbjct:    73 SSSNMEIDPVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCA 132

Query:   119 RIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFY 178
             RIPSS ANTPFWIPIHI+IPERPTECAVFNV+AD PRDSVQFIEWSPTSCPRALLIANF+
Sbjct:   133 RIPSSKANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFH 192

Query:   179 GRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAK 238
             GR+TIWTQP+ G ANLV DA+ WQ EHEWRQDIAVVTKWL+G SPYRWLSSK +S  NAK
Sbjct:   193 GRITIWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAK 252

Query:   239 SIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLG 298
             S FEEKFLSQ+S++S RWPNFLCVCSVFSSGSVQ++WSQWP +Q   A KWF T KGLLG
Sbjct:   253 STFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLG 312

Query:   299 AGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPS 358
             AGPSGIMAAD IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPS
Sbjct:   313 AGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPS 372

Query:   359 LSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEA 418
             LS   W GFAPLAAYLFSWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEA
Sbjct:   373 LSSSSWTGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEA 432

Query:   419 AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS 478
             AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS
Sbjct:   433 AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS 492

Query:   479 VQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTD 537
             VQPVVLHQIFGNPTS+FGGQ P QTVWVS+VD SIP T +FK HQ+AAAGP+ D  K  D
Sbjct:   493 VQPVVLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPD 552

Query:   538 SGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQI 597
             SG EK+  V FDPFDLPSDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI
Sbjct:   553 SGDEKANKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQI 612

Query:   598 SVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAE 657
             +VGSAIAAPAFS TSCCSASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAE
Sbjct:   613 NVGSAIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAE 672

Query:   658 RFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRI 717
             RFWWSLLV VDWWDAVGCTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRI
Sbjct:   673 RFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRI 732

Query:   718 KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDP 777
             KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+P
Sbjct:   733 KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINP 792

Query:   778 EAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVXXX 837
             EAMAV+PALV+SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V   
Sbjct:   793 EAMAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSP 852

Query:   838 XXXXXXXXX-----------------XXXXXXXXXXXXXXXXXXXWVQGAIAKISSTNDG 880
                                                          W+QGAIAKISS+NDG
Sbjct:   853 TQNASSPATPQVFPDKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDG 912

Query:   881 VSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDXXXXXXXXXXXXXXXXXXXXXXPR 940
              SN T++PISG  +FMPISINTGTFPGTPAVRLIGD                      P 
Sbjct:   913 -SNSTASPISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFP- 970

Query:   941 LLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVE 1000
                  QRN D + QK Q  A  K+EE+NS   KPT A+ ++++ Q  R  Q   G KG++
Sbjct:   971 -----QRNADVSSQKLQTGATSKLEEVNSA--KPTPALNRIEDAQGFRGAQLGTGVKGID 1023

Query:  1001 EGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHY 1060
             E  A   KMG GNAGQGYT+EEV+VLF ILMDLC+RT+ L+HPLP SQVGS NIQVRLHY
Sbjct:  1024 ENSARTTKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHY 1083

Query:  1061 IDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSD 1120
             IDGNYTVLPEVVEA+LGPHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRN+FGGP S+
Sbjct:  1084 IDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSE 1143

Query:  1121 PEDVGPVDDTPKLXXXXXXXXXXXXXXXXXYYDSHGLWPRKRRMSERDAAFGLNTSVGLG 1180
             PED+   DD  KL                 Y   H LWPRKRRMSERDAAFG NTSVGLG
Sbjct:  1144 PEDMILTDDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVGLG 1203

Query:  1181 AYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRW 1240
             AYLGIMGSRRDVVTA WKTGLEGVWYKCIRCLRQT+AFASPGAT  PN N+RE WW SRW
Sbjct:  1204 AYLGIMGSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERETWWTSRW 1263

Query:  1241 AFGCPMCGGTWVRVV 1255
              + CPMCGGTWVRVV
Sbjct:  1264 VYCCPMCGGTWVRVV 1278
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009631 "cold acclimation" evidence=IMP
GO:0006970 "response to osmotic stress" evidence=IMP
GO:0032922 "circadian regulation of gene expression" evidence=IMP
GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP
GO:0007155 "cell adhesion" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP
GO:0010104 "regulation of ethylene mediated signaling pathway" evidence=IMP
GO:1901672 "positive regulation of systemic acquired resistance" evidence=IMP
GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP
DICTYBASE|DDB_G0279157 med16 "putative mediator complex subunit 16" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4JGZ1MED16_ARATHNo assigned EC number0.76550.97600.9585yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1255
PF11635753 Med16: Mediator complex subunit 16; InterPro: IPR0 94.94
PF12657173 TFIIIC_delta: Transcription factor IIIC subunit de 94.05
PF11635753 Med16: Mediator complex subunit 16; InterPro: IPR0 88.29
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] Back     alignment and domain information 
Probab=94.94  E-value=0.16  Score=60.23  Aligned_cols=159  Identities=17%  Similarity=0.167  Sum_probs=100.2

Q ss_pred             eEEeeccCCCceeeeeccCCCCC--CCCCCCCceeEEEeeeecccCCCCccccccccCCCcccccccccccccccceecc
Q 000848          471 RVQRWESSVQPVVLHQIFGNPTS--SFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSF  548 (1255)
Q Consensus       471 RvqrWESs~qpvvlhpifgnpts--~~gGqpp~qtvW~skvd~sIp~tdfkn~q~~~~~~~~d~~k~s~~~~dksk~v~f  548 (1255)
                      -|.|||=.-++..|||+|..-.+  +.++++++.+.|+..-|+.++..                            -+.+
T Consensus       214 iI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~----------------------------V~si  265 (753)
T PF11635_consen  214 IIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKR----------------------------VVSI  265 (753)
T ss_pred             EEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCe----------------------------EEEE
Confidence            38999988888999999988763  45578999999998887765432                            1112


Q ss_pred             CCCCCccchhhhheeeeccCCceEEeeeeeCceeeeeCCCcCcccee-----ee-------eccccccc------CccCc
Q 000848          549 DPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNY-----QI-------SVGSAIAA------PAFSS  610 (1255)
Q Consensus       549 dpfdlP~d~rtLAriVySAhgGEiavAfl~GgVhiFSGpnf~pVdny-----qI-------nVgsaIa~------PaFSs  610 (1255)
                      +               +.--|+=++++|--|-||++.=-+|+++...     ..       .+|=..+.      -|||+
T Consensus       266 ~---------------~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP  330 (753)
T PF11635_consen  266 T---------------SPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP  330 (753)
T ss_pred             E---------------ecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc
Confidence            2               2223447899999999999999999776554     11       13434432      26999


Q ss_pred             cccccceeeeccCCCceEEEEEeecCCCccccccccchhhHHHHHHHHHhhhhhcccccchhhcccc
Q 000848          611 TSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQ  677 (1255)
Q Consensus       611 TsCCsASVWHDt~kd~~iLkIirVLPPa~p~~q~ka~ss~weraiaerfwwSLlvgvdWWDaVgctQ  677 (1255)
                      |+|..+-.  |...+..  |...++....-..|.-..+++ -.|++=-+=.-...+.|||+++-+++
T Consensus       331 t~c~~v~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~a~-~~al~~~~a~~~~~~~DDl~~l~~~~  392 (753)
T PF11635_consen  331 TMCSLVQI--DEDGKTK--KLLYMMRDSGSSPQDLYITAA-ALALRFSLACCSQTSSDDLLILIKTE  392 (753)
T ss_pred             ccceEEEE--ecCCCce--eeEEeecCCCCCccccchhHH-HHHHHHHHHHHHhcCcchHHHhhhhh
Confidence            99987665  2222211  555555544443333332211 12222222333567999999998776

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) Back     alignment and domain information
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1255
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 2e-06
 Identities = 50/363 (13%), Positives = 110/363 (30%), Gaps = 98/363 (26%)

Query: 504 VWVSKV----D----TSIPTSNFKIHQLAAAGPTCDVW-KTTDSGLEK-------SKIVS 547
           V  +K     +      + T   ++    +A  T  +        L          K + 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 548 FDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPA 607
             P DLP ++ +      S     IA   +R G+  +   N+  V+  +++  + I    
Sbjct: 313 CRPQDLPREVLTTNPRRLSI----IA-ESIRDGLATWD--NWKHVNCDKLT--TII---- 359

Query: 608 FSSTSCCSASVWH-DTNKDRTILKIIRVLPPAVP-SSQVKANSSTWERAIAERFWWSLLV 665
                   +S+   +  + R +   + V PP+    + +               W+ ++ 
Sbjct: 360 -------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-----------LSLIWFDVIK 401

Query: 666 NVDWWDAVGC-TQSAAE----DGIVSLNSVIAVLDADFHSLPSIQHRQ---QYG------ 711
           +            S  E    +  +S+ S+   L     +  ++ HR     Y       
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFD 460

Query: 712 ------PSLDR-----IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSAL 760
                 P LD+     I   L    + + +      +   + LD   + +E  + + S  
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERM-----TLFRMVFLDF--RFLEQKIRHDST- 512

Query: 761 VPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLAS 820
               W ASG  L+             +  ++ Y   + D    +   +     F   +  
Sbjct: 513 ---AWNASGSILN------------TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 821 HAV 823
           + +
Sbjct: 558 NLI 560
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00