Citrus Sinensis ID: 000851

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250---
Protein Sequence
MEEVELATSGGGGVNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEAME
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEEccccccccccccEEEEEcccEEEEEccccccHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHccccccccccccccHHHHHHcccccccHHHHHHHHHHHcHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccEEEEcccHHHHHcccEEEEEEccEEEEEccHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEccccccccccccccEEEccccEEEEEccccccHHHHHHHHHccccccccEEEEcccccccccHHHHHHHccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccccEEEEEEccEEEEEccHHHHHcccccHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHccEEEEEEEEEEcccccccccEEEEEEEEccccEEEEEccccccHHHHHHHHcccccccEEEEEEccEEHHHEcHHHHHHHEEEEcccccccccEHHHHHHcccccccHHHHHHHHHHHccHHHHHccccHHHcEccccccHccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEccHEccccEEEEEEccEEEEEccHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEccccccccccEEEEEEEEccccEEEEEccccccHHHHHHHHcccccccEEEEEEccEEHHHEcHHHHHHHEEEEcccccccccEHHHHHHcccccccHHHHHHHHHHHccHHHHHccccHHHcEccccccHccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEEcEEccccEEEEEEccEEEEEccHHHHHHccccHHHHHHHHHHcccHHHcc
Coil and Loop (DISEMBL)
MEEVElatsggggvnddnlipkmkqqtnpskkqsgSFLSLFAAADKIDCVLMFLGSLgafihgatlPVFFILFGRMIdslghlsshphrltsrisEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDmsffdteardsniifhiSSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVrhgdtnggkAFTTIINVIFSgfalgqaaPNLAAIAKGKAAAANIISIIKenshsserpgddgitlpklagqiefsevcfaypsrphmvfenlnfsvdagktfafvgpsgsgkSTIISMVQRlyeptsgkilldghdlkSLQLKWLREQmglvsqepaLFATSIANNillgkedaSMDRVIEAAKAANAHsfveglpdgyqtqvgeggtqlsggQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLstvrdvdtimvlkngqvvesgthvdlisKGGEYAALVNLqssehlsnpssicysgssryssfrdfpssrrydvefesskrrelqssdqsfapspSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILtafysphdsqiKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNeigwfdldenntglLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFlkgfggdynraYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKqkgsnfgdIMKSFMVLIITALAVAETLALapdivkgsqalgpvFGILYrktaiqpddpaskevteikgnielrnvsfkypvrpditifenLNLKVSAGRSLAVvgqsgsgksTVISLVMRFydpisgtvlidgydirtLNLRSLRRKIglvqqepalfsTTIYENikygnedaSEIELMKATKaanahgfisrmpegyqshvgdrgvqlsggQKQRVAIARAILknpsilllDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQqgkvaeigsHEQLLRKENGIYKQLIRLQqdknpeame
Flexible Loop (DISEMBL)
meevelatsggggvnddnliPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIkenshsserpgDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAhrlstvrdvdtimvlkngqvvesgTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFesskrrelqssdqsfapsPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTaiqpddpaskevteikgnielrnvsfkypvRPDITIFENLNLKVSAGRSLAVvgqsgsgkstVISLVMRFYDPisgtvlidgydIRTLNLRSLRRKiglvqqepalfsttIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVaeigsheqllrkENGIYKQLirlqqdknpeame
Low Complexity Region (SEG)
MEEVELATSGGGGVNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHalylvylglvalvSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQaapnlaaiakgkaaaaniisiikenSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPssicysgssryssFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRlaavvaaslpllIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVliitalavaetlalaPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEAME
Disordered region (IsUnstruct)
************************************FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLK**L****KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK*************ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ***************QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL*******************************************************SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQ********VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS*********************KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR***********
Disordered Region (DISOPRED)
**************************************SLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTL********GEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKE****************KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL***********************************************************IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLF*****************VAREAIANIRTVAAYGIEKRISIQFASELSQ*NK*ALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGIL********************GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ**************
Disordered Region (DISEMBL)
**********GGGVNDDNLIPKMK**********GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSH************GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRY*******************APSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSL*********KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEAME
Disordered Region (DISPRO)
********************************QSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS*************************************************PSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEVELATSGGGGVNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEAME
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1253	2.2.26 [Sep-21-2011]
Q9C7F8	1245	ABC transporter B family	yes	no	0.964	0.971	0.713	0.0
Q9C7F2	1247	ABC transporter B family	no	no	0.967	0.971	0.701	0.0
Q9LJX0	1252	ABC transporter B family	no	no	0.979	0.980	0.512	0.0
Q8LPK2	1273	ABC transporter B family	no	no	0.970	0.955	0.506	0.0
Q9SGY1	1227	ABC transporter B family	no	no	0.968	0.989	0.493	0.0
Q9ZR72	1286	ABC transporter B family	no	no	0.964	0.940	0.504	0.0
Q9LSJ6	1240	ABC transporter B family	no	no	0.968	0.979	0.430	0.0
Q9LHD1	1240	ABC transporter B family	no	no	0.961	0.971	0.440	0.0
Q9LSJ5	1225	ABC transporter B family	no	no	0.948	0.970	0.428	0.0
Q6YUU5	1245	Putative multidrug resist	no	no	0.968	0.974	0.434	0.0

>sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1

 Score = 1792 bits (4641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1218 (71%), Positives = 1028/1218 (84%), Gaps = 9/1218 (0%)

Query: 34   SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSR 93
            S S + LF+AADK+D  LM LG LGA IHGATLP+FF+ FG+M+DSLG+LS+ P  ++SR
Sbjct: 29   SVSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLDSLGNLSTDPKAISSR 88

Query: 94   ISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDS 153
            +S++ALYLVYLGLV  VSAWIGV+ WMQTGERQTARLR+ YL+S+L KD++FFDTEARDS
Sbjct: 89   VSQNALYLVYLGLVNFVSAWIGVSCWMQTGERQTARLRINYLKSILAKDITFFDTEARDS 148

Query: 154  NIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAG 213
            N+IFHISSDAILVQDAIGDKT H LRYLSQF  GF +GF SVWQLTLLTL VVPLIA+AG
Sbjct: 149  NLIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAG 208

Query: 214  GAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK 273
            G Y I MST+SEK E AY +AGKVAEE++SQVR VYAFVGE KA++SYS+SLK+ALK GK
Sbjct: 209  GGYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGK 268

Query: 274  KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 333
            +SG+AKG+GVGLTY LLFCAWALLLWYA +LVRHG TNG KAFTTI+NVIFSGFALGQAA
Sbjct: 269  RSGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAA 328

Query: 334  PNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMV 393
            P+L+AIAKG+ AAANI  +I  N+  S +  D+G TL  +AG+IEF +V FAYPSRP+MV
Sbjct: 329  PSLSAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPNMV 388

Query: 394  FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
            FENL+F++ +GKTFAFVGPSGSGKSTIISMVQR YEP SG+ILLDG+D+KSL+LKW REQ
Sbjct: 389  FENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFREQ 448

Query: 454  MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
            +GLVSQEPALFAT+IA+NILLGKE+A+MD++IEAAKAANA SF++ LP+GY TQVGEGGT
Sbjct: 449  LGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGT 508

Query: 514  QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573
            QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE IVQ+AL+ +M  RTTIVVAHRL
Sbjct: 509  QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRL 568

Query: 574  STVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSI----CYS-- 627
            ST+R+VD I+VL++GQV E+G+H +L+ +GG+YA LVN Q +E   N  SI    C S  
Sbjct: 569  STIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQETEPQENSRSIMSETCKSQA 628

Query: 628  GSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGS 687
            GSS          +  + V+ E +K  + +    S   S  IWEL+KLN+ EWPYA+LGS
Sbjct: 629  GSSSSRRVSSSRRTSSFRVDQEKTKNDDSKKDFSS---SSMIWELIKLNSPEWPYALLGS 685

Query: 688  VGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF 747
            +GA+LAG + PLF++GI ++LTAFYSP  + IKR V++VA+IF G  +VT P+YLLQHYF
Sbjct: 686  IGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAGAGIVTAPIYLLQHYF 745

Query: 748  YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSII 807
            YTLMGE LT+RVRLS+FSAILSNEIGWFDLDENNTG L S LAADATLVRSALADRLS I
Sbjct: 746  YTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSALADRLSTI 805

Query: 808  VQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSV 867
            VQN++LTVTA  +AF  SWR+AAVV A  PLLI A + EQLFLKGFGGDY RAYSRATSV
Sbjct: 806  VQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSV 865

Query: 868  AREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALG 927
            AREAIANIRTVAAYG EK+IS QF  ELS+P K A +RGHISGFGYG+SQ L+ CSYALG
Sbjct: 866  AREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFGYGLSQFLAFCSYALG 925

Query: 928  LWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKT 987
            LWY SVLI  K +NFGD +KSFMVLI+TA +V+ETLAL PDIVKG+QALG VF +L+R+T
Sbjct: 926  LWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKGTQALGSVFRVLHRET 985

Query: 988  AIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGK 1047
             I PD P S+ V+++KG+IE RNVSF YP RP+I IF+NLNL+VSAG+SLAVVG SGSGK
Sbjct: 986  KISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLNLRVSAGKSLAVVGPSGSGK 1045

Query: 1048 STVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE 1107
            STVI L+MRFYDP +G + IDG DI+TLNLRSLR+K+ LVQQEPALFSTTIYENIKYGNE
Sbjct: 1046 STVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQQEPALFSTTIYENIKYGNE 1105

Query: 1108 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 1167
            +ASE E+M+A KAANAH FI +M EGY++H GD+GVQLSGGQKQRVAIARA+LK+PS+LL
Sbjct: 1106 NASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGGQKQRVAIARAVLKDPSVLL 1165

Query: 1168 LDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1227
            LDEATSALDT+SE L+QEALDKLM+GRTT++VAHRLSTIR AD +AVL +G+V E GSH 
Sbjct: 1166 LDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHR 1225

Query: 1228 QLLRKENGIYKQLIRLQQ 1245
            +L+   NG YKQL  LQ+
Sbjct: 1226 ELVSIPNGFYKQLTSLQE 1243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1

 Score = 1750 bits (4532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 853/1216 (70%), Positives = 1013/1216 (83%), Gaps = 4/1216 (0%)

Query: 34   SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSR 93
            S S + LF+AAD +D  LMFLG LG  IHG TLP+FF+ FG M+DSLG LS+ P+ ++SR
Sbjct: 30   SVSLMGLFSAADNVDYFLMFLGGLGTCIHGGTLPLFFVFFGGMLDSLGKLSTDPNAISSR 89

Query: 94   ISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDS 153
            +S++ALYLVYLGLV LVSAWIGVA WMQTGERQTARLR+ YL+S+L KD++FFDTEARDS
Sbjct: 90   VSQNALYLVYLGLVNLVSAWIGVACWMQTGERQTARLRINYLKSILAKDITFFDTEARDS 149

Query: 154  NIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAG 213
            N IFHISSDAILVQDAIGDKTGH LRYL QF  GF +GF SVWQLTLLTL VVPLIA+AG
Sbjct: 150  NFIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAG 209

Query: 214  GAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK 273
            G Y I MST+SEK EAAY +AGKVAEE++SQVR VYAFVGE KA++SYS+SLK+ALK  K
Sbjct: 210  GGYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLSK 269

Query: 274  KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 333
            +SG+AKG+GVGLTY LLFCAWALL WYA +LVRHG TNG KAFTTI+NVI+SGFALGQA 
Sbjct: 270  RSGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAV 329

Query: 334  PNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMV 393
            P+L+AI+KG+ AAANI  +I  N+  S    ++G TL  + G+IEF  V FAYPSRP+MV
Sbjct: 330  PSLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFAYPSRPNMV 389

Query: 394  FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
            FENL+F++ +GKTFAFVGPSGSGKSTIISMVQR YEP SG+ILLDG+D+K+L+LKWLREQ
Sbjct: 390  FENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQ 449

Query: 454  MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
            MGLVSQEPALFAT+IA+NILLGKE A+MD++IEAAKAANA SF++ LP+GY TQVGEGGT
Sbjct: 450  MGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGT 509

Query: 514  QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573
            QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE IVQ+AL+ +M  RTTIV+AHRL
Sbjct: 510  QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRL 569

Query: 574  STVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYS 633
            ST+R+VD I+VL++GQV E+G+H +LIS+GG+YA LVN Q +E   N  S+ Y      +
Sbjct: 570  STIRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQDTEPQENLRSVMYESCRSQA 629

Query: 634  SFRDFPSSRRYDVEF---ESSKRRELQSSDQSFAPSPS-IWELLKLNAAEWPYAVLGSVG 689
                              E  ++ E  S  +    S S IWEL+KLNA EW YA+LGS+G
Sbjct: 630  GSYSSRRVFSSRRTSSFREDQEKTEKDSKGEDLISSSSMIWELIKLNAPEWLYALLGSIG 689

Query: 690  AILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYT 749
            A+LAG +  LF++G+ ++LT FYSP  S IKR VD+VA+IFVG  +VT P+Y+LQHYFYT
Sbjct: 690  AVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVGAGIVTAPIYILQHYFYT 749

Query: 750  LMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQ 809
            LMGE LT+RVRLS+FSAILSNEIGWFDLDENNTG L S LAADATLVRSA+ADRLS IVQ
Sbjct: 750  LMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSAIADRLSTIVQ 809

Query: 810  NVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAR 869
            N++LT+TA  +AF  SWR+AAVV A  PLLI A + EQLFLKGFGGDY RAYSRATS+AR
Sbjct: 810  NLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSLAR 869

Query: 870  EAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLW 929
            EAI+NIRTVAA+  EK+IS QF  ELS+P K ALLRGHISGFGYG+SQ L+ CSYALGLW
Sbjct: 870  EAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGYGLSQCLAFCSYALGLW 929

Query: 930  YASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAI 989
            Y SVLIK+  +NF D +KSFMVL++TA +VAETLAL PDIVKG+QALG VF +L+R+T I
Sbjct: 930  YISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKGTQALGSVFRVLHRETEI 989

Query: 990  QPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKST 1049
             PD P S+ VT IKG+IE RNVSF YP RP+I IF+NLNL+VSAG+SLAVVG SGSGKST
Sbjct: 990  PPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSAGKSLAVVGPSGSGKST 1049

Query: 1050 VISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDA 1109
            VI L+MRFYDP +G + IDG+DI+++NLRSLR+K+ LVQQEPALFST+I+ENIKYGNE+A
Sbjct: 1050 VIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPALFSTSIHENIKYGNENA 1109

Query: 1110 SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 1169
            SE E+++A KAANAH FISRM EGY +HVGD+GVQLSGGQKQRVAIARA+LK+PS+LLLD
Sbjct: 1110 SEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRVAIARAVLKDPSVLLLD 1169

Query: 1170 EATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            EATSALDT++E  +QEALDKLM+GRTTI+VAHRLSTIR AD I VL +GKV E GSH +L
Sbjct: 1170 EATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVEKGSHREL 1229

Query: 1230 LRKENGIYKQLIRLQQ 1245
            + K +G YK+L  LQ+
Sbjct: 1230 VSKSDGFYKKLTSLQE 1245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1

 Score = 1292 bits (3343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/1251 (51%), Positives = 899/1251 (71%), Gaps = 24/1251 (1%)

Query: 15   NDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFG 74
             D   +P    +    K+QS  F  LF+ ADK D +LMF+GSLGA +HG+++PVFF+LFG
Sbjct: 7    TDAKTVPA---EAEKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFG 63

Query: 75   RMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKY 134
            +M++  G      H++   +S ++LY VYLGLV   S++  +A WM +GERQ A LR KY
Sbjct: 64   QMVNGFGKNQMDLHQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKY 123

Query: 135  LQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194
            L++VLK+D+ FFDT+AR  +I+F +S+D +LVQDAI +K G+ + YLS F  G  VGF S
Sbjct: 124  LEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVS 183

Query: 195  VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE 254
             W+L LL++AV+P IA AGG Y  T++ ++ K   +Y  AG +AE+ I+QVR VY++VGE
Sbjct: 184  AWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGE 243

Query: 255  AKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGK 314
            +KA+ +YS +++  LK G K+G+AKG+G+G TYG+   +WAL+ WYAG+ +R+G T+GGK
Sbjct: 244  SKALNAYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGK 303

Query: 315  AFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLA 374
            AFT I + I  G +LGQ+  NL A +KGKAA   ++ II +     + P  DG  L ++ 
Sbjct: 304  AFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDP-LDGKCLDQVH 362

Query: 375  GQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
            G IEF +V F+YPSRP  M+F N N    +GKT A VG SGSGKST++S+++R Y+P SG
Sbjct: 363  GNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSG 422

Query: 434  KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 493
            +ILLDG ++K+LQLK+LREQ+GLV+QEPALFAT+I  NIL GK DA+M  V  AA AANA
Sbjct: 423  QILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANA 482

Query: 494  HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
            HSF+  LP GY TQVGE G QLSGGQKQRIAIARA+L++PKILLLDEATSALDA SE IV
Sbjct: 483  HSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIV 542

Query: 554  QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
            Q AL+++M  RTT+VVAHRL T+R+VD+I V++ GQVVE+GTH +LI+K G YA+L+  Q
Sbjct: 543  QEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIRFQ 602

Query: 614  S---SEHLSNPSS-------ICYSGSSRYSSFRDFPSSRR---YDVEFESSKRREL---- 656
                +   SNPS+       + +S S++  S R    S R   Y     +  R E+    
Sbjct: 603  EMVGTRDFSNPSTRRTRSTRLSHSLSTKSLSLRS--GSLRNLSYSYSTGADGRIEMISNA 660

Query: 657  QSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD 716
            ++  ++ AP    + LLKLN+ EWPY+++G+VG+IL+G   P FA+ +++++  FY    
Sbjct: 661  ETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDY 720

Query: 717  SQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFD 776
              ++R   +   I++G  +  +  YL+QHYF+++MGE+LT RVR  M SAIL NE+GWFD
Sbjct: 721  DSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFD 780

Query: 777  LDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASL 836
             DE+N+ L+ + LA DA  V+SA+A+R+S+I+QN+   +T+F++AFI+ WR++ ++  + 
Sbjct: 781  EDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTF 840

Query: 837  PLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELS 896
            PLL+ A  A+QL LKGF GD  +A+++ + +A E ++NIRTVAA+  + +I   F  EL 
Sbjct: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELR 900

Query: 897  QPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITA 956
             P K++L R   SGF +G+SQL    S AL LWY + L+ +  S F  ++K F+VL+ITA
Sbjct: 901  VPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITA 960

Query: 957  LAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYP 1016
             +VAET++LAP+I++G +A+G VF +L R+T I PDD  +  V  I+G+IE R+V F YP
Sbjct: 961  NSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYP 1020

Query: 1017 VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 1076
             RPD+ +F + NL++ AG S A+VG SGSGKS+VI+++ RFYDP++G V+IDG DIR LN
Sbjct: 1021 SRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLN 1080

Query: 1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 1136
            L+SLR KIGLVQQEPALF+ TI++NI YG + A+E E++ A +AANAHGFIS +PEGY++
Sbjct: 1081 LKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKT 1140

Query: 1137 HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTT 1196
             VG+RGVQLSGGQKQR+AIARA+LKNP++LLLDEATSALD  SE ++QEAL++LM GRTT
Sbjct: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTT 1200

Query: 1197 IMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1247
            ++VAHRLSTIR  D I V+Q G++ E GSH +L+ +  G Y +L++LQ  +
Sbjct: 1201 VVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQTHR 1251

Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3

 Score = 1261 bits (3264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1235 (50%), Positives = 888/1235 (71%), Gaps = 19/1235 (1%)

Query: 22   KMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLG 81
            K K+ T P      S L LF+ AD  DCVLM LGS+GA IHGA++P+FFI FG++I+ +G
Sbjct: 51   KEKEMTQPKV----SLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIG 106

Query: 82   HLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKK 141
                 P + + R+++++L  VYL +  L S+W+ VA WM TGERQ A++R  YL+S+L +
Sbjct: 107  LAYLFPKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQ 166

Query: 142  DMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLL 201
            D+S FDTEA    +I  I+SD ++VQDA+ +K G+ L Y+S+F  GFA+GFTSVWQ++L+
Sbjct: 167  DISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLV 226

Query: 202  TLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESY 261
            TL++VPLIA+AGG Y      L  +   +Y +AG++AEE+I  VR V AF GE +A+  Y
Sbjct: 227  TLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLY 286

Query: 262  SHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIIN 321
              +L+   K G+K+G+ KG+G+G  + +LF +WALL+W+  ++V     +GGK+FTT++N
Sbjct: 287  REALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLN 346

Query: 322  VIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSE 381
            V+ +G +LGQAAP+++A  + KAAA  I  +I+ N+  ++     G  L K+ G I+F +
Sbjct: 347  VVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNT-VTKTSAKSGRKLGKVDGHIQFKD 405

Query: 382  VCFAYPSRPHMV-FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 440
              F+YPSRP +V F+ LN ++ AGK  A VG SGSGKST+IS+++R YEP SG +LLDG+
Sbjct: 406  ATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGN 465

Query: 441  DLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 500
            ++  L +KWLR Q+GLV+QEPALFAT+I  NIL GK+DA+ + +  AAK + A SF+  L
Sbjct: 466  NISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNL 525

Query: 501  PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
            P+G++TQVGE G QLSGGQKQRIAI+RA+++NP ILLLDEATSALDAESE  VQ AL+++
Sbjct: 526  PEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRV 585

Query: 561  MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQSSEHLS 619
            M  RTT+VVAHRLSTVR+ D I V+  G++VE G H +LIS   G Y++L+ LQ +  L 
Sbjct: 586  MVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQ 645

Query: 620  -NPS---SICYSGSSRYSSFRDFPSSRR-YDVEFESSKRRELQSSDQSFAPSPSIWELLK 674
             NPS   ++    S +YS  R+   +R  +  E ES  R +   +D S     ++  L  
Sbjct: 646  RNPSLNRTLSRPHSIKYS--RELSRTRSSFCSERESVTRPD--GADPSKKVKVTVGRLYS 701

Query: 675  LNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLA 734
            +   +W Y V G++ A +AG + PLFALG++  L ++YS  D + ++ + ++A++F   +
Sbjct: 702  MIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWD-ETQKEIKKIAILFCCAS 760

Query: 735  VVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADAT 794
            V+T+ VY ++H  +  MGE LT RVR +MF AIL NEIGWFD  +N + +L S L +DAT
Sbjct: 761  VITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDAT 820

Query: 795  LVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFG 854
            L+++ + DR +I++QN+ L VT+F+IAFIL+WRL  VV A+ PL+I   ++E+LF++G+G
Sbjct: 821  LLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYG 880

Query: 855  GDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYG 914
            GD N+AY +A  +A E+++NIRTVAA+  E++I   ++ EL +P+K +  RG I+G  YG
Sbjct: 881  GDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYG 940

Query: 915  VSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQ 974
            VSQ     SY L LWY S L+ +  + F  +MK+FMVLI+TALA+ ETLALAPD++KG+Q
Sbjct: 941  VSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQ 1000

Query: 975  ALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAG 1034
             +  VF IL RKT I  +   S+E+  ++G IEL+ V F YP RPD+ IF + +L V AG
Sbjct: 1001 MVASVFEILDRKTQIVGE--TSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAG 1058

Query: 1035 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 1094
            +S+A+VGQSGSGKS+VISL++RFYDP +G V+I+G DI+ L+L++LR+ IGLVQQEPALF
Sbjct: 1059 KSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALF 1118

Query: 1095 STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154
            +TTIYENI YGNE AS+ E++++   ANAH FI+ +PEGY + VG+RGVQ+SGGQ+QR+A
Sbjct: 1119 ATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIA 1178

Query: 1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAV 1214
            IARAILKNP+ILLLDEATSALD  SE ++Q+ALD+LM  RTT++VAHRLSTI+NAD I+V
Sbjct: 1179 IARAILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISV 1238

Query: 1215 LQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNP 1249
            L  GK+ E GSH +L+  ++G Y +LI LQQ + P
Sbjct: 1239 LHGGKIVEQGSHRKLVLNKSGPYFKLISLQQQQQP 1273

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2

 Score = 1244 bits (3219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/1235 (49%), Positives = 877/1235 (71%), Gaps = 21/1235 (1%)

Query: 15   NDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFG 74
            ++D  I  M       K+ S SFL LF+ AD  DCVLM LGS+GA IHGA++PVFFI FG
Sbjct: 4    SNDPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFG 63

Query: 75   RMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKY 134
            ++I+ +G     P   + ++++++L  VYL +V L S+W+ VA WM TGERQ A++R  Y
Sbjct: 64   KLINIIGLAYLFPQEASHKVAKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRKAY 123

Query: 135  LQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194
            L+S+L +D+S FDTE     +I  I+S+ ++VQDAI +K G+ + ++S+F  GFA+GF S
Sbjct: 124  LRSMLSQDISLFDTEISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGFAS 183

Query: 195  VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE 254
            VWQ++L+TL++VP IA+AGG Y    S L  +   +Y +A ++AEE+I  VR V AF GE
Sbjct: 184  VWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFTGE 243

Query: 255  AKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGK 314
             KA+ SY  +L+     G+K+G+AKG+G+G  + +LF +WALL+W+  I+V  G  NGG+
Sbjct: 244  EKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANGGE 303

Query: 315  AFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLA 374
            +FTT++NV+ +G +LGQAAP+++   +  AAA  I  +I+ N+         G  L  + 
Sbjct: 304  SFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIERNTEDK-----TGRKLGNVN 358

Query: 375  GQIEFSEVCFAYPSRPHMV-FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
            G I F +V F YPSRP +V F+ LNF + AGK  A VG SGSGKST+IS+++R YEPT G
Sbjct: 359  GDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDG 418

Query: 434  KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 493
             ++LDG+D++ L LKWLR  +GLV+QEP LFAT+I  NI+ GK+DA+ + +  AAK + A
Sbjct: 419  AVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEA 478

Query: 494  HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
             SF+  LP+G++TQVGE G QLSGGQKQRI+I+RA+++NP ILLLDEATSALDAESE IV
Sbjct: 479  ISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIV 538

Query: 554  QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNL 612
            Q AL+++M  RTT+VVAHRLSTVR+ D I V+  G+++ESG+H +LIS   G Y++L+ +
Sbjct: 539  QEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRI 598

Query: 613  Q--SSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIW 670
            Q  +S +L++  S+  S           P       E  SS  + +   D +     ++ 
Sbjct: 599  QEAASPNLNHTPSLPVSTK---------PLPELPITETTSSIHQSVNQPDTTKQAKVTVG 649

Query: 671  ELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIF 730
             L  +   +W Y + G++G+ +AG + PLFALGI   L ++Y   ++  +  V +++++F
Sbjct: 650  RLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQALVSYYMDWETT-QNEVKRISILF 708

Query: 731  VGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLA 790
               +V+T+ V+ ++H  + +MGE LT RVR  MFSAIL NEIGWFD  +N + +L S L 
Sbjct: 709  CCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSMLASRLE 768

Query: 791  ADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFL 850
            +DATL+R+ + DR +I+++N+ L VTAF+I+FIL+WRL  VV A+ PL+I   ++E++F+
Sbjct: 769  SDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLATYPLIISGHISEKIFM 828

Query: 851  KGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISG 910
            +G+GG+ ++AY +A  +A E+I+NIRTV A+  E+++   ++ EL +P++++  RG ++G
Sbjct: 829  QGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFRRGQMAG 888

Query: 911  FGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIV 970
              YGVSQ     SY L LWY S+L+++  S+F  +MK+FMVLI+TAL + E LALAPD++
Sbjct: 889  ILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLALAPDLL 948

Query: 971  KGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLK 1030
            KG+Q +  VF +L R+T +  D    +E++ ++G IEL+ V F YP RPD+TIF + NL 
Sbjct: 949  KGNQMVVSVFELLDRRTQVVGD--TGEELSNVEGTIELKGVHFSYPSRPDVTIFSDFNLL 1006

Query: 1031 VSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQE 1090
            V +G+S+A+VGQSGSGKS+V+SLV+RFYDP +G ++IDG DI+ L L+SLRR IGLVQQE
Sbjct: 1007 VPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQE 1066

Query: 1091 PALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150
            PALF+TTIYENI YG E ASE E+M+A K ANAH FIS +PEGY + VG+RG+Q+SGGQ+
Sbjct: 1067 PALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQR 1126

Query: 1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNAD 1210
            QR+AIARA+LKNP ILLLDEATSALD  SE ++Q+ALD+LM  RTT++VAHRLSTI+N+D
Sbjct: 1127 QRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTTVVVAHRLSTIKNSD 1186

Query: 1211 KIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1245
             I+V+Q GK+ E GSH  L+  +NG Y +LI LQQ
Sbjct: 1187 MISVIQDGKIIEQGSHNILVENKNGPYSKLISLQQ 1221

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1

 Score = 1223 bits (3164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1238 (50%), Positives = 867/1238 (70%), Gaps = 29/1238 (2%)

Query: 36   SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRIS 95
            +F  LF  AD +D VLM +GS+GAF+HG +LP+F   F  +++S G  S++  ++   + 
Sbjct: 28   AFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVEKMMEEVL 87

Query: 96   EHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNI 155
            ++ALY + +G     S+W  ++ WM +GERQT ++R+KYL++ L +D+ FFDTE R S++
Sbjct: 88   KYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEVRTSDV 147

Query: 156  IFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGA 215
            +F I++DA++VQDAI +K G+ + Y++ F  GF VGFT+VWQL L+TLAVVPLIAV GG 
Sbjct: 148  VFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGGI 207

Query: 216  YTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS 275
            +T T+S LS K + +  +AG + E+ + Q+R V AFVGE++A ++YS +LK A K G K+
Sbjct: 208  HTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYKT 267

Query: 276  GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPN 335
            G+AKG+G+G TY ++FC +ALLLWY G LVRH  TNGG A  T+  V+  G ALGQ+AP+
Sbjct: 268  GLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAPS 327

Query: 336  LAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VF 394
            +AA AK K AAA I  II ++  + ER  + G+ L  + G +E   V F+YPSRP + + 
Sbjct: 328  MAAFAKAKVAAAKIFRII-DHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKIL 386

Query: 395  ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
             N   SV AGKT A VG SGSGKST++S+++R Y+P SG++LLDG DLK+L+L+WLR+Q+
Sbjct: 387  NNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQI 446

Query: 455  GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514
            GLVSQEPALFATSI  NILLG+ DA    + EAA+ ANAHSF+  LPDG+ TQVGE G Q
Sbjct: 447  GLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQ 506

Query: 515  LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 574
            LSGGQKQRIAIARA+L+NP ILLLDEATSALD+ESE +VQ AL++ M  RTT+++AHRLS
Sbjct: 507  LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLS 566

Query: 575  TVRDVDTIMVLKNGQVVESGTHVDLISKG--GEYAALVNLQSSEH---LSN-------PS 622
            T+R  D + VL+ G V E GTH +L SKG  G YA L+ +Q + H   +SN       PS
Sbjct: 567  TIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNARKSSARPS 626

Query: 623  SICYSGSS----RYSSFRDFPSSRR--------YDVEFESSKRRELQSSDQSFAP-SPSI 669
            S   S SS    R SS+   P SRR        + +  ++S     ++   +F   + S 
Sbjct: 627  SARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAFKDQANSF 686

Query: 670  WELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALI 729
            W L K+N+ EW YA+LGSVG+++ G  +  FA  ++ +L+ +Y+P    + + +D+   +
Sbjct: 687  WRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQIDKYCYL 746

Query: 730  FVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTL 789
             +GL+   +    LQH F+ ++GE+LT RVR  M SA+L NE+ WFD +EN +  + + L
Sbjct: 747  LIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENESARIAARL 806

Query: 790  AADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLF 849
            A DA  VRSA+ DR+S+IVQN AL + A    F+L WRLA V+ A  P+++ A V +++F
Sbjct: 807  ALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMF 866

Query: 850  LKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHIS 909
            + GF GD   A+++ T +A EAIAN+RTVAA+  E +I   + + L  P K+   +G I+
Sbjct: 867  MTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRCFWKGQIA 926

Query: 910  GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDI 969
            G GYGV+Q     SYALGLWYAS L+K   S+F   ++ FMVL+++A   AETL LAPD 
Sbjct: 927  GSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDF 986

Query: 970  VKGSQALGPVFGILYRKTAIQPDDPASKEVTE-IKGNIELRNVSFKYPVRPDITIFENLN 1028
            +KG QA+  VF +L RKT I+PDDP +  V + ++G +EL+++ F YP RPDI IF +L+
Sbjct: 987  IKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPDIQIFRDLS 1046

Query: 1029 LKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQ 1088
            L+  AG++LA+VG SG GKS+VISL+ RFY+P SG V+IDG DIR  NL+++R+ I +V 
Sbjct: 1047 LRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIRKHIAIVP 1106

Query: 1089 QEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148
            QEP LF TTIYENI YG+E A+E E+++A   A+AH FIS +PEGY+++VG+RGVQLSGG
Sbjct: 1107 QEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYVGERGVQLSGG 1166

Query: 1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN 1208
            QKQR+AIARA+++   I+LLDEATSALD  SE  +QEALD+   GRT+I+VAHRLSTIRN
Sbjct: 1167 QKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIVVAHRLSTIRN 1226

Query: 1209 ADKIAVLQQGKVAEIGSHEQLLRKE-NGIYKQLIRLQQ 1245
            A  IAV+  GKVAE GSH  LL+   +GIY ++I+LQ+
Sbjct: 1227 AHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQR 1264

Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1

 Score = 1011 bits (2615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/1239 (43%), Positives = 786/1239 (63%), Gaps = 25/1239 (2%)

Query: 24   KQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHL 83
            K+      K  GS  S+F  AD +D +LM LG +GA   G   PV   +F  ++++LG  
Sbjct: 7    KESGRDKMKSFGSIRSIFMHADGVDWILMALGLIGAVGDGFITPVVVFIFNTLLNNLGTS 66

Query: 84   SSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDM 143
            SS+       IS++ + L+Y+   + V  ++    W +TGERQ AR+R KYL++VL++D+
Sbjct: 67   SSNNKTFMQTISKNVVALLYVACGSWVICFLEGYCWTRTGERQAARMREKYLRAVLRQDV 126

Query: 144  SFFDTEARD-SNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLT 202
             +FD      S++I  ISSD++++QD + +K  + L   S F   + V F  +W+LT++ 
Sbjct: 127  GYFDLHVTSTSDVITSISSDSLVIQDFLSEKLPNFLMNASAFVASYIVSFILMWRLTIVG 186

Query: 203  LAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYS 262
               + L+ V G  Y   + ++S K    Y EAG +AE+ IS VR VYAF  E K I  +S
Sbjct: 187  FPFIILLLVPGLMYGRALVSISRKIHEQYNEAGSIAEQAISSVRTVYAFGSENKMIGKFS 246

Query: 263  HSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINV 322
             +L+ ++K G + G+AKGI +G + G+    WA L WY   LV +  + GG  F  I  +
Sbjct: 247  TALRGSVKLGLRQGLAKGITIG-SNGVTHAIWAFLTWYGSRLVMNHGSKGGTVFVVISCI 305

Query: 323  IFSGFALGQAAPNLAAIAKGKAAAANIISIIKE--NSHSSERPGDDGITLPKLAGQIEFS 380
             + G +LGQ+  NL   ++   A   I+ +IK   +  S+++ G     L ++ G++EF+
Sbjct: 306  TYGGVSLGQSLSNLKYFSEAFVAWERILEVIKRVPDIDSNKKEGQ---ILERMKGEVEFN 362

Query: 381  EVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439
             V F Y SRP   +F++L   + AGKT A VG SGSGKST+IS++QR Y+P +G+IL+DG
Sbjct: 363  HVKFTYLSRPETTIFDDLCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDG 422

Query: 440  HDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEG 499
              +  LQ+ WLR QMGLVSQEP LFATSI  NIL GKEDAS+D V+EAAKA+NAH+F+  
Sbjct: 423  VSIDKLQVNWLRSQMGLVSQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQ 482

Query: 500  LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
             P GY+TQVGE G Q+SGGQKQRIAIARA++++PKILLLDEATSALD+ESE +VQ +L+ 
Sbjct: 483  FPLGYKTQVGERGVQMSGGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDN 542

Query: 560  IMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQSSEHL 618
                RTTIV+AHRLST+R+ D I V+ NGQ+VE+G+H +L+ +  G+Y +LV+LQ  E+ 
Sbjct: 543  ASIGRTTIVIAHRLSTIRNADVICVIHNGQIVETGSHEELLKRIDGQYTSLVSLQQMENE 602

Query: 619  SNPSSICYSGSSR--YSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPS------PSIW 670
             +  +I  S +     S  +DF  S+   +   SS    + ++     P+      PS  
Sbjct: 603  ESNVNINVSVTKDQVMSLSKDFKYSQHNSIGSTSS---SIVTNVSDLIPNDNQPLVPSFT 659

Query: 671  ELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIF 730
             L+ +N  EW +A+ G + A L G+  P+ A     +++ F+     QIK       L+F
Sbjct: 660  RLMVMNRPEWKHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIKEKTRIYVLLF 719

Query: 731  VGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLA 790
            VGLA+ +  V + QHY +  MGE+LT R+R  M S IL+ E+ WFD+D+N++G + S LA
Sbjct: 720  VGLAIFSFLVNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSGAICSRLA 779

Query: 791  ADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFL 850
             DA +VRS + DR+S++VQ ++  + A +I  +++WRLA V+ +  PL++  F  +++ L
Sbjct: 780  KDANVVRSMVGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCFYTQRVLL 839

Query: 851  KGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQ-PNKQALLRGHIS 909
            K      ++A   ++ +A EA++NIRT+ A+  ++RI I+   ++ + P ++++ R  ++
Sbjct: 840  KSLSEKASKAQDESSKLAAEAVSNIRTITAFSSQERI-IKLLKKVQEGPRRESVHRSWLA 898

Query: 910  GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDI 969
            G   G S+ L  C+ AL  WY   LI           + F++ + T   +A+   +  D+
Sbjct: 899  GIVLGTSRSLITCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIADAGTMTTDL 958

Query: 970  VKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNL 1029
             +G  A+G VF +L R T I+P +P      +IKG I   NV F YP RPD+ IFEN ++
Sbjct: 959  ARGLDAVGSVFAVLDRCTTIEPKNPDGYVAEKIKGQITFLNVDFAYPTRPDVVIFENFSI 1018

Query: 1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQ 1089
            ++  G+S A+VG SGSGKST+I L+ RFYDP+ GTV IDG DIR+ +LRSLR+ I LV Q
Sbjct: 1019 EIDEGKSTAIVGTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLRSLRKYISLVSQ 1078

Query: 1090 EPALFSTTIYENIKYG--NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147
            EP LF+ TI ENI YG  ++   E E+++A KAANAH FI+ +  GY ++ GD+GVQLSG
Sbjct: 1079 EPMLFAGTIRENIMYGGTSDKIDESEIIEAAKAANAHDFITSLSNGYDTNCGDKGVQLSG 1138

Query: 1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIR 1207
            GQKQR+AIARA+LKNPS+LLLDEATSALD+ SE ++Q+AL+++M GRT+IM+AHRLSTI+
Sbjct: 1139 GQKQRIAIARAVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAHRLSTIQ 1198

Query: 1208 NADKIAVLQQGKVAEIGSHEQLLRK-ENGIYKQLIRLQQ 1245
            N D I VL +GK+ E G+H  LL K   G Y  L  +Q+
Sbjct: 1199 NCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSLAGIQR 1237

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1224 (44%), Positives = 778/1224 (63%), Gaps = 19/1224 (1%)

Query: 35   GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRI 94
            GS  S+F  AD +D +LM LG +GA   G T P+  ++  ++++++G  S +       I
Sbjct: 18   GSVRSIFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIGGSSFNTDTFMQSI 77

Query: 95   SEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARD-S 153
            S++++ L+Y+   + V  ++    W +TGERQTAR+R KYL++VL++D+ +FD      S
Sbjct: 78   SKNSVALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAVLRQDVGYFDLHVTSTS 137

Query: 154  NIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAG 213
            ++I  +SSD+ ++QD + +K  + L   S F   + VGF  +W+L ++ L  + L+ + G
Sbjct: 138  DVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAIVGLPFIVLLVIPG 197

Query: 214  GAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK 273
              Y   + ++S K    Y EAG VAE+ IS VR VYAF GE K I  +S +L+ ++K G 
Sbjct: 198  LMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISKFSTALQGSVKLGI 257

Query: 274  KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 333
            K G+AKGI +G + G+ F  W  + WY   +V +    GG  F     +   G +LG   
Sbjct: 258  KQGLAKGITIG-SNGITFAMWGFMSWYGSRMVMYHGAQGGTVFAVAAAIAIGGVSLGGGL 316

Query: 334  PNLAAIAKGKAAAANIISIIKENSH-SSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM 392
             NL    +  +    I+ +I       S+ P  DG  L K+ G++EF  V F YPSR   
Sbjct: 317  SNLKYFFEAASVGERIMEVINRVPKIDSDNP--DGHKLEKIRGEVEFKNVKFVYPSRLET 374

Query: 393  -VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451
             +F++    V +GKT A VG SGSGKST+IS++QR Y+P +G+IL+DG  +  LQ+KWLR
Sbjct: 375  SIFDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQVKWLR 434

Query: 452  EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
             QMGLVSQEPALFAT+I  NIL GKEDASMD V+EAAKA+NAH+F+  LP+GY+TQVGE 
Sbjct: 435  SQMGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGER 494

Query: 512  GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571
            G Q+SGGQKQRIAIARA++++P ILLLDEATSALD+ESE +VQ ALE     RTTI++AH
Sbjct: 495  GVQMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAH 554

Query: 572  RLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQSSEHLSNPSSICYSGSS 630
            RLST+R+ D I V+KNG +VE+G+H +L+    G+Y+ LV+LQ  E      S+     S
Sbjct: 555  RLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHLQQIEKQDINVSVKIGPIS 614

Query: 631  RYSSFRDFPSSRRYDVEFESSKRRELQS-------SDQSFAPSPSIWELLKLNAAEWPYA 683
              S  +D  +S R      SS    +         S+ +    PS   LL +N  EW  A
Sbjct: 615  DPS--KDIRNSSRVSTLSRSSSANSVTGPSTIKNLSEDNKPQLPSFKRLLAMNLPEWKQA 672

Query: 684  VLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLL 743
            + G + A L G   P +A  +  +++ ++     +IK      AL FVGLAV++  + + 
Sbjct: 673  LYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEKTRIYALSFVGLAVLSFLINIS 732

Query: 744  QHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADR 803
            QHY +  MGE+LT R+R  M S +L+ E+GWFD DEN++G + S LA DA +VRS + DR
Sbjct: 733  QHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICSRLAKDANVVRSLVGDR 792

Query: 804  LSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSR 863
            ++++VQ V+    AF +  +++WRLA V+ A  P++I  F   ++ LK       +A   
Sbjct: 793  MALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRRVLLKSMSKKAIKAQDE 852

Query: 864  ATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCS 923
            ++ +A EA++N+RT+ A+  ++RI          P ++++ +   +GFG  +SQ L+ C+
Sbjct: 853  SSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRESIRQSWFAGFGLAMSQSLTSCT 912

Query: 924  YALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGIL 983
            +AL  WY   LI+        + ++FM+L+ T   +A+  ++  D+ KGS A+G VF +L
Sbjct: 913  WALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMTTDLAKGSDAVGSVFAVL 972

Query: 984  YRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQS 1043
             R T+I P+DP   E   I G +E  +V F YP RPD+ IF+N ++K+  G+S A+VG S
Sbjct: 973  DRYTSIDPEDPDGYETERITGQVEFLDVDFSYPTRPDVIIFKNFSIKIEEGKSTAIVGPS 1032

Query: 1044 GSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIK 1103
            GSGKST+I L+ RFYDP+ G V IDG DIR+ +LRSLRR I LV QEP LF+ TI ENI 
Sbjct: 1033 GSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENII 1092

Query: 1104 YG--NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 1161
            YG  ++   E E+++A KAANAH FI+ + EGY ++ GDRGVQLSGGQKQR+AIARA+LK
Sbjct: 1093 YGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDTYCGDRGVQLSGGQKQRIAIARAVLK 1152

Query: 1162 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVA 1221
            NPS+LLLDEATSALD+ SE ++Q+AL+++M GRT++++AHRLSTI+N D IAVL +GK+ 
Sbjct: 1153 NPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRLSTIQNCDAIAVLDKGKLV 1212

Query: 1222 EIGSHEQLLRK-ENGIYKQLIRLQ 1244
            E G+H  LL K   GIY  L+ LQ
Sbjct: 1213 ERGTHSSLLSKGPTGIYFSLVSLQ 1236

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1245 (42%), Positives = 767/1245 (61%), Gaps = 56/1245 (4%)

Query: 32   KQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLT 91
            K  GS  S+F  AD +D +LM LG +GA   G   P+ F +  ++++++G  S       
Sbjct: 3    KSFGSIRSIFMHADGVDWMLMALGLIGAVGDGFITPIIFFICSKLLNNVGGSSFDDETFM 62

Query: 92   SRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEAR 151
              ++++A+ LVY+   + V  +I    W +TGERQ A++R KYL++VL++D+ +FD    
Sbjct: 63   QTVAKNAVALVYVACASWVICFIEGYCWTRTGERQAAKMREKYLKAVLRQDVGYFDLHVT 122

Query: 152  D-SNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIA 210
              S++I  +SSD++++QD + +K  + L   S F   + VGF  +W+LT++    + L+ 
Sbjct: 123  STSDVITSVSSDSLVIQDFLSEKLPNFLMNTSAFVASYIVGFLLLWRLTIVGFPFIILLL 182

Query: 211  VAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALK 270
            + G  Y   +  +S K    Y EAG +AE++IS VR VYAF  E K IE +S +L+ ++K
Sbjct: 183  IPGLMYGRALIRISMKIREEYNEAGSIAEQVISSVRTVYAFGSEKKMIEKFSTALQGSVK 242

Query: 271  QGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALG 330
             G + G+AKGI +G + G+ +  W  L WY   +V +  + GG   + I+ V F G +LG
Sbjct: 243  LGLRQGLAKGIAIG-SNGITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIVCVTFGGTSLG 301

Query: 331  QAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDD-----GITLPKLAGQIEFSEVCFA 385
            Q+  NL   ++       I+ +I      +  PG D     G  L K  G++EF+ V F 
Sbjct: 302  QSLSNLKYFSEAFVVGERIMKVI------NRVPGIDSDNLEGQILEKTRGEVEFNHVKFT 355

Query: 386  YPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 444
            YPSRP   +F++L   V +GKT A VG SGSGKST+IS++QR Y+P +G+IL+DG  +  
Sbjct: 356  YPSRPETPIFDDLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINK 415

Query: 445  LQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
            LQ+KWLR QMGLVSQEP LFATSI  NIL GKEDASMD V+EAAKA+NAHSF+   P+ Y
Sbjct: 416  LQVKWLRSQMGLVSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSY 475

Query: 505  QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564
            QTQVGE G QLSGGQKQRIAIARA++++P ILLLDEATSALD+ESE +VQ AL+     R
Sbjct: 476  QTQVGERGVQLSGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGR 535

Query: 565  TTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQ-----SSEHL 618
            TTIV+AHRLST+R+ D I V+ NG+++E+G+H +L+ K  G+Y +LV LQ      S+H+
Sbjct: 536  TTIVIAHRLSTIRNADVICVVHNGRIIETGSHEELLEKLDGQYTSLVRLQQVDNKESDHI 595

Query: 619  S---------------NPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSF 663
            S               +P    +S SS     RDFP+    D +                
Sbjct: 596  SVEEGQASSLSKDLKYSPKEFIHSTSSNI--VRDFPNLSPKDGK---------------- 637

Query: 664  APSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVV 723
            +  PS   L+ +N  EW +A+ G +GA L G   P+++     +++ ++     QIK   
Sbjct: 638  SLVPSFKRLMSMNRPEWKHALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKT 697

Query: 724  DQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTG 783
                L+FVGLA+ T    + QHY +  MGE+LT R+R  M   IL+ E+ WFD DEN++G
Sbjct: 698  RIYVLLFVGLALFTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSG 757

Query: 784  LLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAF 843
             + S LA DA +VRS + DR+S++VQ ++       I  ++SWR + V+ +  P+++  F
Sbjct: 758  AICSRLAKDANMVRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCF 817

Query: 844  VAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQAL 903
              +++ LK    +  +    ++ +A EA++NIRT+ A+  ++RI          P K + 
Sbjct: 818  YTQRVLLKSMSRNAIKGQDESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSA 877

Query: 904  LRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETL 963
             +  ++G   G SQ L  C  AL  WY   LI        + ++ F++   T   +AE  
Sbjct: 878  RQSWLAGIMLGTSQSLITCVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAG 937

Query: 964  ALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITI 1023
             +  D+VKGS A+  VF +L R T I+P++P      ++KG I   NV F YP RPD+ I
Sbjct: 938  TMTKDLVKGSDAVASVFAVLDRNTTIEPENPDGYVPKKVKGQISFSNVDFAYPTRPDVII 997

Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083
            F+N ++ +  G+S A+VG SGSGKST+ISL+ RFYDP+ G V IDG DIR+ +LRSLR+ 
Sbjct: 998  FQNFSIDIEDGKSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQH 1057

Query: 1084 IGLVQQEPALFSTTIYENIKYG--NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDR 1141
            I LV QEP LF+ TI ENI YG  +    E E+++A KAANAH FI+ +  GY +  GDR
Sbjct: 1058 IALVSQEPTLFAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDTCCGDR 1117

Query: 1142 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1201
            GVQLSGGQKQR+AIARA+LKNPS+LLLDEATSALD+ SE+++Q+AL++LM GRT++++AH
Sbjct: 1118 GVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAH 1177

Query: 1202 RLSTIRNADKIAVLQQGKVAEIGSHEQLLRK-ENGIYKQLIRLQQ 1245
            RLSTI+  D IAVL+ G V E G+H  LL K   G Y  L+ LQ+
Sbjct: 1178 RLSTIQKCDTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQR 1222

Arabidopsis thaliana (taxid: 3702)

>sp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1226 (43%), Positives = 785/1226 (64%), Gaps = 13/1226 (1%)

Query: 36   SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRIS 95
            SF+++F  AD  D  LM LG LGA   G + PV  ++  R+ + LG  +      +S+++
Sbjct: 19   SFMTVFMHADAADVALMVLGLLGAMGDGISTPVMLLITSRIFNDLGSGADIVKEFSSKVN 78

Query: 96   EHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFD-TEARDSN 154
             +A  LV+L   + V A++    W +T ERQ +R+R +YL++VL++D+ +FD  +   + 
Sbjct: 79   VNARNLVFLAAASWVMAFLEGYCWARTAERQASRMRARYLRAVLRQDVEYFDLKKGSTAE 138

Query: 155  IIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGG 214
            +I  +S+D+++VQD + +K  + +   + F   +AVGF  +W+LTL+ L  V L+ + G 
Sbjct: 139  VITSVSNDSLVVQDVLSEKVPNFVMNAAMFAGSYAVGFALLWRLTLVALPSVVLLIIPGF 198

Query: 215  AYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK 274
             Y   +  L+ +    Y   G +AE+ +S  R VY+FV E   +  +S +L+E+ + G K
Sbjct: 199  MYGRILVGLARRIREQYTRPGAIAEQAVSSARTVYSFVAERTTMAQFSAALEESARLGLK 258

Query: 275  SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAP 334
             G+AKGI VG + G+ F  WA  +WY   LV +    GG  F     ++  G ALG    
Sbjct: 259  QGLAKGIAVG-SNGITFAIWAFNVWYGSRLVMYHGYQGGTVFAVSAAIVVGGLALGSGLS 317

Query: 335  NLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-V 393
            N+   ++  +AA  I+ +I+      +   D G  L  + G++EF  V F YPSRP   +
Sbjct: 318  NVKYFSEASSAAERILEVIRRVPKI-DSESDTGEELANVTGEVEFRNVEFCYPSRPESPI 376

Query: 394  FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
            F + N  V AG+T A VG SGSGKST+I++++R Y+P++G++++DG D++ L+LKWLR Q
Sbjct: 377  FVSFNLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQ 436

Query: 454  MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
            MGLVSQEPALFATSI  NIL GKE+A+ + V+ AAKAANAH+F+  LP GY TQVGE G 
Sbjct: 437  MGLVSQEPALFATSIRENILFGKEEATAEEVVAAAKAANAHNFISQLPQGYDTQVGERGV 496

Query: 514  QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573
            Q+SGGQKQRIAIARA+L++PKILLLDEATSALD ESE +VQ AL+     RTTIV+AHRL
Sbjct: 497  QMSGGQKQRIAIARAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRL 556

Query: 574  STVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQSSEHLSNPSSICYSGS--- 629
            ST+R+ D I V+++G+V E G H +LI+   G Y++LV LQ +   +    I  +GS   
Sbjct: 557  STIRNADIIAVMQSGEVKELGPHDELIANDNGLYSSLVRLQQTRDSNEIDEIGVTGSTSA 616

Query: 630  ----SRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVL 685
                S +S  R F ++ R          R+  ++++   P PS   LL LNA EW  A++
Sbjct: 617  VGQSSSHSMSRRFSAASRSSSARSLGDARDDDNTEKPKLPVPSFRRLLMLNAPEWKQALM 676

Query: 686  GSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQH 745
            GS  A++ G   P +A  +  +++ ++    ++IK      ALIFVGLAV++  + + QH
Sbjct: 677  GSFSAVVFGGIQPAYAYAMGSMISVYFLTDHAEIKDKTRTYALIFVGLAVLSFLINIGQH 736

Query: 746  YFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLS 805
            Y +  MGE+LT R+R  M + IL+ EIGWFD DEN++G + S LA DA +VRS + DR++
Sbjct: 737  YNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSSGAICSQLAKDANVVRSLVGDRMA 796

Query: 806  IIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRAT 865
            +++Q ++  + A  +  +++WRLA V+ A  PL+I  F A ++ LK        A + ++
Sbjct: 797  LVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVCFYARRVLLKSMSKKSIHAQAESS 856

Query: 866  SVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYA 925
             +A EA++N+RT+ A+  ++RI   F      P K+++ +   +G G G S  L  C++A
Sbjct: 857  KLAAEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLGTSMSLMTCTWA 916

Query: 926  LGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYR 985
            L  WY   L+ +   +  ++ ++FM+L+ T   +A+  ++  D+ KG+ A+  VF +L R
Sbjct: 917  LDFWYGGRLMAEHHISAKELFQTFMILVSTGRVIADAGSMTTDLAKGADAVASVFAVLDR 976

Query: 986  KTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGS 1045
            +T I PD+P   +  ++KG +++R V F YP RPD+ IF+   L +  G+S A+VGQSGS
Sbjct: 977  ETEIDPDNPQGYKPEKLKGEVDIRGVDFAYPSRPDVIIFKGFTLSIQPGKSTALVGQSGS 1036

Query: 1046 GKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG 1105
            GKST+I L+ RFYDPI G+V IDG DI+  NLR+LRR IGLV QEP LF+ TI ENI YG
Sbjct: 1037 GKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRALRRHIGLVSQEPTLFAGTIRENIVYG 1096

Query: 1106 NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165
             E ASE E+  A ++ANAH FIS + +GY +  G+RGVQLSGGQKQR+AIARAILKNP+I
Sbjct: 1097 TETASEAEIEDAARSANAHDFISNLKDGYDTWCGERGVQLSGGQKQRIAIARAILKNPAI 1156

Query: 1166 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1225
            LLLDEATSALD+ SE ++QEALD++M GRT+++VAHRLSTI+N D I VL++G V E G+
Sbjct: 1157 LLLDEATSALDSQSEKVVQEALDRVMIGRTSVVVAHRLSTIQNCDLITVLEKGTVVEKGT 1216

Query: 1226 HEQLLRKE-NGIYKQLIRLQQDKNPE 1250
            H  L+ K  +G Y  L+ LQQ  N +
Sbjct: 1217 HASLMAKGLSGTYFSLVNLQQGGNQQ 1242

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1253
255538998	1252	multidrug resistance protein 1, 2, putat	0.990	0.991	0.776	0.0
147816786	1344	hypothetical protein VITISV_031708 [Viti	0.984	0.917	0.782	0.0
359492272	1254	PREDICTED: ABC transporter B family memb	0.984	0.983	0.781	0.0
356552060	1250	PREDICTED: ABC transporter B family memb	0.988	0.991	0.779	0.0
356562417	1250	PREDICTED: ABC transporter B family memb	0.988	0.991	0.775	0.0
449437414	1281	PREDICTED: ABC transporter B family memb	0.994	0.972	0.730	0.0
449515526	1248	PREDICTED: LOW QUALITY PROTEIN: ABC tran	0.992	0.995	0.729	0.0
224065781	1219	multidrug/pheromone exporter, MDR family	0.965	0.992	0.744	0.0
297851228	1246	P-glycoprotein 13 [Arabidopsis lyrata su	0.966	0.971	0.722	0.0
15217776	1245	ABC transporter B family member 13 [Arab	0.964	0.971	0.713	0.0

>gi|255538998|ref|XP_002510564.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223551265|gb|EEF52751.1| multidrug resistance protein 1, 2, putative [Ricinus communis]

 Score = 1970 bits (5104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 972/1251 (77%), Positives = 1104/1251 (88%), Gaps = 10/1251 (0%)

Query: 1    MEEVELATSGGGGVNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAF 60
            M EVELA+     V D N    M Q ++ SK  + SF +LF+AADKID  LMF GSLGA 
Sbjct: 1    MNEVELASDQ---VLDQNSPKAMDQPSSSSKTPTVSFFALFSAADKIDYFLMFFGSLGAC 57

Query: 61   IHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWM 120
            IHGA+LPVFFI FGRMIDSLG+L+S P ++++++S+HALYLVYLGLV  VSAWIGVA WM
Sbjct: 58   IHGASLPVFFIFFGRMIDSLGNLASDPQKMSTQVSKHALYLVYLGLVVFVSAWIGVALWM 117

Query: 121  QTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRY 180
            QTGERQTARLRLKYLQSVL+KDM+FFDTEARDSNI+FHISSDAIL+QDAIGDKTGHA+RY
Sbjct: 118  QTGERQTARLRLKYLQSVLRKDMNFFDTEARDSNIMFHISSDAILIQDAIGDKTGHAMRY 177

Query: 181  LSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEE 240
            LSQF VGFA+GF  VWQLTLLTLAVVPLIAVAGGAYT+ MSTLSEKGEAAY EAGKVAEE
Sbjct: 178  LSQFIVGFAIGFVYVWQLTLLTLAVVPLIAVAGGAYTVIMSTLSEKGEAAYAEAGKVAEE 237

Query: 241  IISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWY 300
            +ISQ+R VY+FVGE KAIE+YS SL +ALK GKKSGVAKG+GVG TYGLLFCAWALLLWY
Sbjct: 238  VISQIRTVYSFVGEDKAIEAYSKSLNKALKLGKKSGVAKGVGVGFTYGLLFCAWALLLWY 297

Query: 301  AGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSS 360
            A ILVRH   NG KAFT IINVIFSGFALGQA PNLAAIAKG+AAAANII++IK++S  S
Sbjct: 298  ASILVRHHHINGAKAFTMIINVIFSGFALGQATPNLAAIAKGRAAAANIINMIKKDSCPS 357

Query: 361  ERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTI 420
                +DGI LP++ G+IEF  +CF+YPSRP+MVFENL+FSV AGKTFA VGPSGSGKST+
Sbjct: 358  NS-SEDGIELPEVDGKIEFCNICFSYPSRPNMVFENLSFSVSAGKTFAVVGPSGSGKSTV 416

Query: 421  ISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDAS 480
            ISMVQR YEP SGKILLDGHDLK+L+LKWLREQ+GLVSQEPALFAT+IA+NIL GKED  
Sbjct: 417  ISMVQRFYEPNSGKILLDGHDLKTLRLKWLREQLGLVSQEPALFATTIADNILFGKEDGR 476

Query: 481  MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
            MD+VIEAAK ANAHSFV+ LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE
Sbjct: 477  MDQVIEAAKVANAHSFVQQLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 536

Query: 541  ATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 600
            ATSALDAESELIVQ+AL+KIMSNRTTI+VAHRLST+RDVDTI+VLKNGQV ESG H+DLI
Sbjct: 537  ATSALDAESELIVQQALDKIMSNRTTIIVAHRLSTIRDVDTIIVLKNGQVAESGNHLDLI 596

Query: 601  SKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSD 660
            SKGGEYA+LV LQ SEHL + +SI +S +   SSF + P S    + F+S    E+QS+D
Sbjct: 597  SKGGEYASLVGLQVSEHLKHSNSIGHSEADGNSSFGELPHSHNNPLNFKSISTGEVQSND 656

Query: 661  Q-----SFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPH 715
            +     + A + SIWELLKLN+ EWP A+LGS+GA+LAGMEAP+FALGITH+LTAFY P 
Sbjct: 657  ERIDLANHASTASIWELLKLNSPEWPCALLGSLGAVLAGMEAPMFALGITHVLTAFYYPD 716

Query: 716  DSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWF 775
             S+++  + +V LIFVGLAV+TIP+YLLQHYFYTLMGE LTARVRLSMFSAILSNEIGWF
Sbjct: 717  ASEMRHEIQRVVLIFVGLAVITIPIYLLQHYFYTLMGERLTARVRLSMFSAILSNEIGWF 776

Query: 776  DLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAAS 835
            DLDENNTG L STLAADATLVRSALADRLS +VQNVALTVTA VIAF LSWR+A+VV AS
Sbjct: 777  DLDENNTGSLTSTLAADATLVRSALADRLSTVVQNVALTVTACVIAFTLSWRVASVVVAS 836

Query: 836  LPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASEL 895
            LPLL+GA +AEQLFLKGFGGDY+ AYSRATSVAREA+ NIRTVAA+G E+RISIQFASEL
Sbjct: 837  LPLLVGASIAEQLFLKGFGGDYH-AYSRATSVAREALTNIRTVAAFGAEERISIQFASEL 895

Query: 896  SQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIIT 955
            ++PNKQALLRGH+SGFGYG++QL +  SYALGLWYAS+LI  + SNFG+IMKSFMVLIIT
Sbjct: 896  NKPNKQALLRGHVSGFGYGITQLFAFGSYALGLWYASILITHRDSNFGNIMKSFMVLIIT 955

Query: 956  ALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKY 1015
            ALA+AETLAL PDIVKG+QAL PVF IL+RKTAI P++P SK V +IKG+I+ RNV+FKY
Sbjct: 956  ALAIAETLALTPDIVKGTQALAPVFSILHRKTAIDPENPTSKMVADIKGDIDFRNVNFKY 1015

Query: 1016 PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL 1075
            P RPDITIF+ LNLKV AGRSLAVVGQSGSGKST+I+L++RFYDPISGT+LIDG +I+TL
Sbjct: 1016 PARPDITIFQQLNLKVPAGRSLAVVGQSGSGKSTIIALLLRFYDPISGTILIDGCEIKTL 1075

Query: 1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
            NL+SLR KIGLVQQEPALFSTTIYENI+YGNE+ASEIE+MKA KAANAHGFISRMPEGYQ
Sbjct: 1076 NLKSLRLKIGLVQQEPALFSTTIYENIRYGNENASEIEIMKAAKAANAHGFISRMPEGYQ 1135

Query: 1136 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1195
            +HVGDRG+QLSGGQKQRVAIARA+LKNPSILLLDEATSALDT SE  +QEAL+KLMEGRT
Sbjct: 1136 THVGDRGLQLSGGQKQRVAIARAMLKNPSILLLDEATSALDTESEKTVQEALNKLMEGRT 1195

Query: 1196 TIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1246
            TI+VAHRLSTIR+AD IAVLQ GKVAEIGSH QL+ K + IYKQL+ LQQ+
Sbjct: 1196 TILVAHRLSTIRDADSIAVLQHGKVAEIGSHTQLIGKPDSIYKQLVSLQQE 1246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816786|emb|CAN71068.1| hypothetical protein VITISV_031708 [Vitis vinifera]

 Score = 1966 bits (5093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 970/1240 (78%), Positives = 1092/1240 (88%), Gaps = 7/1240 (0%)

Query: 14   VNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILF 73
            ++D N +P+  QQ+N S K + SF  LFAAAD +DC  MF GS+GA IHGA LPVFF+LF
Sbjct: 101  ISDQNPLPEKDQQSNSSPKDTVSFFGLFAAADTLDCFFMFFGSIGACIHGAALPVFFVLF 160

Query: 74   GRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLK 133
            GRMIDSLG LSS P +L+S++S HALYLVYLGL  L SAWIGVAFWMQTGERQTARLRLK
Sbjct: 161  GRMIDSLGRLSSDPDKLSSQVSRHALYLVYLGLGVLASAWIGVAFWMQTGERQTARLRLK 220

Query: 134  YLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT 193
            YLQSVL++D++FFDTEARD NI FHIS+DAIL+QDAIGDK GH LRYLSQFFVGFA+GFT
Sbjct: 221  YLQSVLRQDINFFDTEARDKNITFHISNDAILLQDAIGDKIGHGLRYLSQFFVGFAIGFT 280

Query: 194  SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVG 253
            SVWQLTLLT+AVVPL+A+AGGAYT+ M+TLSEKGEAAY EAGKVAEE ISQVR VY+FVG
Sbjct: 281  SVWQLTLLTVAVVPLMAIAGGAYTVIMTTLSEKGEAAYAEAGKVAEEAISQVRTVYSFVG 340

Query: 254  EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGG 313
            E +A+E+YS SL++ALK GKKSG AKGIG+G TYGLLFCAWALLLWYA  LVRHGDTNGG
Sbjct: 341  EDRAVETYSRSLQKALKLGKKSGFAKGIGIGFTYGLLFCAWALLLWYASKLVRHGDTNGG 400

Query: 314  KAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKL 373
            KAFTTI+NVIFSGFALGQAAPNLAAIAKG+AAAANI+++I+ +S +S+R  D+GI LPK+
Sbjct: 401  KAFTTILNVIFSGFALGQAAPNLAAIAKGRAAAANIVNMIETDSTASKRL-DNGIMLPKV 459

Query: 374  AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
            AGQ+EF EVCFAYPSRP MVFENL+FS+ AGKTFA VGPSGSGKSTIISMVQR YEPTSG
Sbjct: 460  AGQLEFCEVCFAYPSRPSMVFENLSFSIYAGKTFAVVGPSGSGKSTIISMVQRFYEPTSG 519

Query: 434  KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 493
            KILLDGHD+K+L+LKWLR QMGLVSQEPALFAT+IA NIL GKEDA MD+VIEAAKAANA
Sbjct: 520  KILLDGHDIKNLRLKWLRAQMGLVSQEPALFATTIAGNILYGKEDADMDQVIEAAKAANA 579

Query: 494  HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
            HSFV+GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV
Sbjct: 580  HSFVQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 639

Query: 554  QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
            Q+AL+KIM NRTTIVVAHRLST+RDV+ I+VLKNGQVVESGTH++LIS+GGEYA LV+LQ
Sbjct: 640  QKALDKIMLNRTTIVVAHRLSTIRDVNKIIVLKNGQVVESGTHLELISQGGEYATLVSLQ 699

Query: 614  SSEHLSNPSS-ICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPS---- 668
             SEH  +PS+ +C   S    SF + P+S+ +  E +S  + ELQ  DQ+ A S S    
Sbjct: 700  VSEHGKSPSTKVCQDTSGISKSFPESPNSQNHQQEVKSITKGELQPYDQNMASSSSPPIP 759

Query: 669  -IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVA 727
             +W+L+KLNA EWP+AVLGSVGAILAGMEAPLFALGITH+LTAFYS  D QIKR VD ++
Sbjct: 760  SLWQLVKLNAPEWPFAVLGSVGAILAGMEAPLFALGITHVLTAFYSGKDFQIKREVDHIS 819

Query: 728  LIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLIS 787
            LIFVG A++TI +YLLQHYFYTLMGE LT R+RL MFSAILSNEIGWFDLDEN+TG L S
Sbjct: 820  LIFVGAAILTIFIYLLQHYFYTLMGERLTTRIRLLMFSAILSNEIGWFDLDENSTGSLTS 879

Query: 788  TLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQ 847
             LAADATL RSALADRLS IVQNVALTVTAFVIAF LSWR+A+V+ AS PLLIGA + EQ
Sbjct: 880  KLAADATLXRSALADRLSTIVQNVALTVTAFVIAFTLSWRIASVIIASFPLLIGASITEQ 939

Query: 848  LFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGH 907
            LFLKGFGGDY RAY++AT+VAREAIANIRTVAA+G E RIS+QFASEL+QPNKQALLRGH
Sbjct: 940  LFLKGFGGDYTRAYAQATAVAREAIANIRTVAAFGAEDRISLQFASELNQPNKQALLRGH 999

Query: 908  ISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAP 967
            ISGFGYGVSQL + CSYALGLWYASVLIK   SNFGDI+KSFMVLIITA +VAETLAL P
Sbjct: 1000 ISGFGYGVSQLFAFCSYALGLWYASVLIKHNDSNFGDIIKSFMVLIITAFSVAETLALTP 1059

Query: 968  DIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENL 1027
            DIVKGSQALG VF IL RKTAI  D P S  VT+I+G+IE RNVSF+YP RPD+TIF++L
Sbjct: 1060 DIVKGSQALGSVFSILQRKTAINRDXPTSSVVTDIQGDIEFRNVSFRYPARPDLTIFKDL 1119

Query: 1028 NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLV 1087
            NLK+SAG+SLA+VGQSGSGKSTVISLVMRFYDP SG V+IDG+DI+ LNLRSLR KIGLV
Sbjct: 1120 NLKISAGKSLAIVGQSGSGKSTVISLVMRFYDPTSGAVMIDGFDIKGLNLRSLRMKIGLV 1179

Query: 1088 QQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147
            QQEPALFSTTIYENI+YGNE+ASEIE+MKA +AANAH FISRMPEGYQ+ VGDRGVQLSG
Sbjct: 1180 QQEPALFSTTIYENIRYGNEEASEIEIMKAARAANAHXFISRMPEGYQTQVGDRGVQLSG 1239

Query: 1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIR 1207
            GQKQRVAIARAILK+PSILLLDEATSALDTASE L+QEALD LMEGRTTI++AHRLSTI 
Sbjct: 1240 GQKQRVAIARAILKDPSILLLDEATSALDTASEKLVQEALDTLMEGRTTILIAHRLSTIH 1299

Query: 1208 NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1247
            NAD IAVLQ GKV E G H QL+ +   IYKQL+ LQQ+K
Sbjct: 1300 NADSIAVLQHGKVVETGDHRQLITRPGSIYKQLVSLQQEK 1339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492272|ref|XP_002279471.2| PREDICTED: ABC transporter B family member 13-like [Vitis vinifera]

 Score = 1966 bits (5093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 969/1240 (78%), Positives = 1093/1240 (88%), Gaps = 7/1240 (0%)

Query: 14   VNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILF 73
            ++D + +P+  QQ+N S K + SF  LFAAAD +DC  MF GS+GA IHGA LPVFF+LF
Sbjct: 11   ISDQSPLPEKDQQSNSSPKDTVSFFGLFAAADTLDCFFMFFGSIGACIHGAALPVFFVLF 70

Query: 74   GRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLK 133
            GRMIDSLG LSS P +L+S++S HALYLVYLGL  L SAWIGVAFWMQTGERQTARLRLK
Sbjct: 71   GRMIDSLGRLSSDPDKLSSQVSRHALYLVYLGLGVLASAWIGVAFWMQTGERQTARLRLK 130

Query: 134  YLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT 193
            YLQSVL++D++FFDTEARD NI FHIS+DAIL+QDAIGDK GH LRYLSQFFVGFA+GFT
Sbjct: 131  YLQSVLRQDINFFDTEARDKNITFHISNDAILLQDAIGDKIGHGLRYLSQFFVGFAIGFT 190

Query: 194  SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVG 253
            SVWQLTLLT+AVVPL+A+AGGAYT+ M+TLSEKGEAAY EAGKVAEE ISQVR VY+FVG
Sbjct: 191  SVWQLTLLTVAVVPLMAIAGGAYTVIMTTLSEKGEAAYAEAGKVAEEAISQVRTVYSFVG 250

Query: 254  EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGG 313
            E +A+E+YS SL++ALK GKKSG AKGIG+G TYGLLFCAWALLLWYA  LVRHGDTNGG
Sbjct: 251  EDRAVETYSRSLQKALKLGKKSGFAKGIGIGFTYGLLFCAWALLLWYASKLVRHGDTNGG 310

Query: 314  KAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKL 373
            KAFTTI+NVIFSGFALGQAAPNLAAIAKG+AAAANI+++I+ +S +S+R  D+GI LPK+
Sbjct: 311  KAFTTILNVIFSGFALGQAAPNLAAIAKGRAAAANIVNMIETDSTASKRL-DNGIMLPKV 369

Query: 374  AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
            AGQ+EF EVCFAYPSRP MVFENL+FS+ AGKTFA VGPSGSGKSTIISMVQR YEPTSG
Sbjct: 370  AGQLEFCEVCFAYPSRPSMVFENLSFSIYAGKTFAVVGPSGSGKSTIISMVQRFYEPTSG 429

Query: 434  KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 493
            KILLDGHD+K+L+LKWLR QMGLVSQEPALFAT+IA NIL GKEDA MD+VIEAAKAANA
Sbjct: 430  KILLDGHDIKNLRLKWLRAQMGLVSQEPALFATTIAGNILYGKEDADMDQVIEAAKAANA 489

Query: 494  HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
            HSFV+GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV
Sbjct: 490  HSFVQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 549

Query: 554  QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
            Q+AL+KIM NRTTIVVAHRLST+RDV+ I+VLKNGQVVESGTH++LIS+GGEYA LV+LQ
Sbjct: 550  QKALDKIMLNRTTIVVAHRLSTIRDVNKIIVLKNGQVVESGTHLELISQGGEYATLVSLQ 609

Query: 614  SSEHLSNPSS-ICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPS---- 668
             SEH  +PS+ +C   S    SF + P+S+ +  E +S  + ELQ  DQ+ A S S    
Sbjct: 610  VSEHGKSPSTKVCQDTSGISKSFPESPNSQNHQQEVKSITKGELQPYDQNMASSSSPPIP 669

Query: 669  -IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVA 727
             +W+L+KLNA EWP+AVLGSVGAILAGMEAPLFALGITH+LTAFYS  D QIKR VD ++
Sbjct: 670  SLWQLVKLNAPEWPFAVLGSVGAILAGMEAPLFALGITHVLTAFYSGKDFQIKREVDHIS 729

Query: 728  LIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLIS 787
            LIFVG A++TI +YLLQHYFYTLMGE LT R+RL MFSAILSNEIGWFDLDEN+TG L S
Sbjct: 730  LIFVGAAILTIFIYLLQHYFYTLMGERLTTRIRLLMFSAILSNEIGWFDLDENSTGSLTS 789

Query: 788  TLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQ 847
             LAADATLVRSALADRLS IVQNVALTVTAFVIAF LSWR+A+V+ AS PLLIGA + EQ
Sbjct: 790  KLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWRIASVIIASFPLLIGASITEQ 849

Query: 848  LFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGH 907
            LFLKGFGGDY RAY++AT+VAREAIANIRTVAA+G E RIS+QFASEL+QPNKQALLRGH
Sbjct: 850  LFLKGFGGDYTRAYAQATAVAREAIANIRTVAAFGAEDRISLQFASELNQPNKQALLRGH 909

Query: 908  ISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAP 967
            ISGFGYGVSQL + CSYALGLWYASVLIK   SNFGDI+KSFMVLIITA +VAETLAL P
Sbjct: 910  ISGFGYGVSQLFAFCSYALGLWYASVLIKHNDSNFGDIIKSFMVLIITAFSVAETLALTP 969

Query: 968  DIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENL 1027
            DIVKGSQALG VF IL RKTAI  D+P S  VT+I+G+IE RNVSF+YP RPD+ IF++L
Sbjct: 970  DIVKGSQALGSVFSILQRKTAINRDNPTSSVVTDIQGDIEFRNVSFRYPARPDLIIFKDL 1029

Query: 1028 NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLV 1087
            NLK+SAG+SLA+VGQSGSGKSTVISLVMRFYDP SG V+IDG+DI+ LNLRSLR KIGLV
Sbjct: 1030 NLKISAGKSLAIVGQSGSGKSTVISLVMRFYDPTSGAVMIDGFDIKGLNLRSLRMKIGLV 1089

Query: 1088 QQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147
            QQEPALFSTTIYENI+YGNE+ASEIE+MKA +AANAH FISRMPEGYQ+ VGDRGVQLSG
Sbjct: 1090 QQEPALFSTTIYENIRYGNEEASEIEIMKAARAANAHSFISRMPEGYQTQVGDRGVQLSG 1149

Query: 1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIR 1207
            GQKQRVAIARAILK+PSILLLDEATSALDTASE L+QEALD LMEGRTTI++AHRLSTI 
Sbjct: 1150 GQKQRVAIARAILKDPSILLLDEATSALDTASEKLVQEALDTLMEGRTTILIAHRLSTIH 1209

Query: 1208 NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1247
            NAD IAVLQ GKV E G H QL+ +   IYKQL+ LQQ+K
Sbjct: 1210 NADSIAVLQHGKVVETGDHRQLITRPGSIYKQLVSLQQEK 1249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552060|ref|XP_003544389.1| PREDICTED: ABC transporter B family member 13-like [Glycine max]

 Score = 1961 bits (5080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 974/1250 (77%), Positives = 1091/1250 (87%), Gaps = 11/1250 (0%)

Query: 1    MEEVELATSGGGGVNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAF 60
            M EVELA      + + N+  K  QQ   SK  S SF  LFAAAD  DCVLMFLGS+G+ 
Sbjct: 1    MAEVELAPDS---LIEQNVTSKTVQQ---SKTDSVSFFGLFAAADATDCVLMFLGSVGSC 54

Query: 61   IHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWM 120
            +HGA LPVFFILFGRMIDSLGHLS++PH+L+SRISEHALYLVYLG V LVSAW+GVAFWM
Sbjct: 55   VHGAALPVFFILFGRMIDSLGHLSNNPHKLSSRISEHALYLVYLGGVVLVSAWMGVAFWM 114

Query: 121  QTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRY 180
            QTGERQTARLRLKYLQ+VLKKD++FFD EARD+NIIFHISSDAILVQDAIGDKTGHA+RY
Sbjct: 115  QTGERQTARLRLKYLQAVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRY 174

Query: 181  LSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEE 240
            LSQF VGFA+GFTSVWQLTLLTLAVVPLIAVAGGAYTI MSTLSEKGEAAY EAGKVAEE
Sbjct: 175  LSQFIVGFAIGFTSVWQLTLLTLAVVPLIAVAGGAYTIIMSTLSEKGEAAYAEAGKVAEE 234

Query: 241  IISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWY 300
            +ISQVR VY+FVGE KA  SYS SL  ALK GKK G AKG+GVG TYGLLFCAWALLLWY
Sbjct: 235  VISQVRTVYSFVGEEKAAGSYSKSLDNALKLGKKGGFAKGVGVGFTYGLLFCAWALLLWY 294

Query: 301  AGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSS 360
            A ILVRH  TNGGKAFTTIINVIFSGFALGQAAPNL +IAKG+ AAANI+++I   S +S
Sbjct: 295  ASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRVAAANIMNMIASASRNS 354

Query: 361  ERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTI 420
            ++  DDG  +P++AG+IEF EVCFAYPSR +M+FE L+FSV AGKT A VGPSGSGKSTI
Sbjct: 355  KKL-DDGNIVPQVAGEIEFCEVCFAYPSRSNMIFEKLSFSVSAGKTIAVVGPSGSGKSTI 413

Query: 421  ISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDAS 480
            +S++QR Y+PTSGKILLDG+DLK+LQLKWLREQMGLVSQEPALFAT+IA NIL GKEDA 
Sbjct: 414  VSLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDAD 473

Query: 481  MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
            MD+VI+AA AANAHSF++GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK+LLLDE
Sbjct: 474  MDKVIQAAMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDE 533

Query: 541  ATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 600
            ATSALDAESELIVQ+ALEKIMSNRTTIVVAHRLST+RDVDTI+VLKNGQVVESGTH++L+
Sbjct: 534  ATSALDAESELIVQQALEKIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVESGTHLELM 593

Query: 601  SKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSD 660
            S  GEY  LV+LQ+S+ L+N  SI  S SSR SSFR+   +   +   +     ELQS D
Sbjct: 594  SNNGEYVNLVSLQASQSLTNSRSISCSESSRNSSFREPSDNLTLEEPLKLDTAAELQSRD 653

Query: 661  QSF----APSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD 716
            Q        +PSI +LLKLNA EWPYA+LGSVGAILAGMEAPLFALGITHILTAFYSP  
Sbjct: 654  QHLPSKTTSTPSILDLLKLNAPEWPYAILGSVGAILAGMEAPLFALGITHILTAFYSPQG 713

Query: 717  SQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFD 776
            S+IK+ VD VA IF+G+AV+TIP+YLL HYFYTLMGE LTARVRL MFSAIL+NE+ WFD
Sbjct: 714  SKIKQEVDWVAFIFLGVAVITIPIYLLLHYFYTLMGERLTARVRLLMFSAILNNEVAWFD 773

Query: 777  LDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASL 836
            +DE+NTG L + LAADATLVRSALADRLS IVQNVALTVTAFVI F LSW+L AVV A L
Sbjct: 774  MDEHNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKLTAVVVACL 833

Query: 837  PLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELS 896
            PLLIGA + EQLFLKGFGGDY  AYSRATS+AREAIANIRTVAA+G E RISIQFASEL+
Sbjct: 834  PLLIGASITEQLFLKGFGGDYGHAYSRATSLAREAIANIRTVAAFGAEDRISIQFASELN 893

Query: 897  QPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITA 956
            +PNKQALLRGHISGFGYG++QLL+ CSYALGLWYASVLIK+  SNFGDIMKSFMVLIIT+
Sbjct: 894  KPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKNESNFGDIMKSFMVLIITS 953

Query: 957  LAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYP 1016
            LA+AETLAL PDIVKGSQALG VFGI+ R+TAI P+DP SK +T++KG IE RNVSFKYP
Sbjct: 954  LAIAETLALTPDIVKGSQALGSVFGIIQRRTAITPNDPNSKMITDVKGEIEFRNVSFKYP 1013

Query: 1017 VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 1076
            +RPDITIF+NLNL V AG+SLAVVGQSGSGKSTVISLVMRFYDP  G+VLID  DI++LN
Sbjct: 1014 MRPDITIFQNLNLIVPAGKSLAVVGQSGSGKSTVISLVMRFYDPDLGSVLIDECDIKSLN 1073

Query: 1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 1136
            LRSLR +IGLVQQEPALFSTT+YENIKYG E+ASEIE+MKA KAANAH FISRMPEGY++
Sbjct: 1074 LRSLRLRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYKT 1133

Query: 1137 HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTT 1196
             VG+RG QLSGGQKQRVAIARAILK+PSILLLDEATSALDT SE L+QEALDKLMEGRTT
Sbjct: 1134 EVGERGAQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTT 1193

Query: 1197 IMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1246
            I+VAHRLST+R+AD IAVLQ G+VAE+GSHE+L+ K   IYKQL+ LQ +
Sbjct: 1194 ILVAHRLSTVRDADSIAVLQNGRVAEMGSHERLMAKPASIYKQLVSLQHE 1243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562417|ref|XP_003549468.1| PREDICTED: ABC transporter B family member 13-like [Glycine max]

 Score = 1954 bits (5061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 969/1250 (77%), Positives = 1091/1250 (87%), Gaps = 11/1250 (0%)

Query: 1    MEEVELATSGGGGVNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAF 60
            M EVELA        + N+  K+ QQT   K +S SF  LFA AD  DCVLMFLG  G+ 
Sbjct: 1    MAEVELAPDSR---LEQNVSSKIDQQT---KTESVSFFGLFATADATDCVLMFLGCFGSC 54

Query: 61   IHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWM 120
            +HGA LPVFFILFGRMIDSLGHLS+ PH+L+SR+SEHALYLVYLG V LVSAW+GVAFWM
Sbjct: 55   VHGAALPVFFILFGRMIDSLGHLSNDPHKLSSRVSEHALYLVYLGGVVLVSAWMGVAFWM 114

Query: 121  QTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRY 180
            QTGERQTARLRLKYLQ+VLKKD++FFD EARD+NIIFHISSDAILVQDAIGDKTGHA+RY
Sbjct: 115  QTGERQTARLRLKYLQAVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRY 174

Query: 181  LSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEE 240
            LSQF VGFA+GFTSVWQLTLLTLAVVPLIAVAGGAYTI MSTLSEKGEAAY EAGKVA+E
Sbjct: 175  LSQFIVGFAIGFTSVWQLTLLTLAVVPLIAVAGGAYTIIMSTLSEKGEAAYAEAGKVAQE 234

Query: 241  IISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWY 300
            +ISQVR VY+FVGE KA+ SYS SL  ALK GKK G+AKGIGVG TYGLLFCAWALLLWY
Sbjct: 235  VISQVRTVYSFVGEEKAVGSYSKSLDNALKLGKKGGLAKGIGVGFTYGLLFCAWALLLWY 294

Query: 301  AGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSS 360
            A ILVR+  TNGGKAFTTIINVIFSGFALGQAAPNL +IAKG+AAA NI+++I   S +S
Sbjct: 295  ASILVRNHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAGNIMNMIASTSRNS 354

Query: 361  ERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTI 420
            ++  DDG  +P++AG+IEF EVCFAYPSR +M+FE L+FSV AGKT A VGPSGSGKSTI
Sbjct: 355  KK-FDDGNVVPQVAGEIEFCEVCFAYPSRSNMIFEKLSFSVSAGKTIAIVGPSGSGKSTI 413

Query: 421  ISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDAS 480
            +S++QR Y+PTSGKILLDG+DLK+LQLKWLREQMGLVSQEPALFAT+IA NIL GKEDA 
Sbjct: 414  VSLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDAD 473

Query: 481  MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
            MD+VI+AA AANAHSF++GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK+LLLDE
Sbjct: 474  MDKVIQAAMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKVLLLDE 533

Query: 541  ATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 600
            ATSALDAESELIVQ+ALEKIMSNRTTIVVAHRLST+RDVDTI+VLKNGQVVESGTH++L+
Sbjct: 534  ATSALDAESELIVQQALEKIMSNRTTIVVAHRLSTIRDVDTIVVLKNGQVVESGTHLELM 593

Query: 601  SKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSD 660
            S  GEY  LV+LQ+S++L+N  SI  S SSR SSFR+   +   + + +     ELQS D
Sbjct: 594  SNNGEYVNLVSLQASQNLTNSRSISRSESSRNSSFREPSDNLTLEEQLKLDAAAELQSRD 653

Query: 661  QSF----APSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD 716
            Q        +PSI +LLKLNA EWPYA+LGSVGAILAGMEAPLFALGITHILTAFYSP  
Sbjct: 654  QHLPSKTTSTPSILDLLKLNAPEWPYAILGSVGAILAGMEAPLFALGITHILTAFYSPQG 713

Query: 717  SQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFD 776
            S+IK+ VD+VA IF+G+AV+TIP+YLL HYFYTLMGE LTARVRL MFSAIL+NE+ WFD
Sbjct: 714  SKIKQEVDRVAFIFLGVAVITIPIYLLLHYFYTLMGERLTARVRLLMFSAILNNEVAWFD 773

Query: 777  LDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASL 836
             DENNTG L + LAADATLVRSALADRLS IVQNVALTVTAFVI F LSW+L AVV A L
Sbjct: 774  KDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKLTAVVVACL 833

Query: 837  PLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELS 896
            PLLIGA + EQLFLKGFGGDY  AYSRATS+AREAIANIRTVAA+G E R+S QFASEL+
Sbjct: 834  PLLIGASITEQLFLKGFGGDYGHAYSRATSLAREAIANIRTVAAFGAEDRVSTQFASELN 893

Query: 897  QPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITA 956
            +PNKQALLRGHISGFGYG++QLL+ CSYALGLWYASVLIK+  SNFGDIMKSFMVLIIT+
Sbjct: 894  KPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKNESNFGDIMKSFMVLIITS 953

Query: 957  LAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYP 1016
            LA+AETLAL PDIVKGSQALG VFGI+ R+TAI P+D  SK VT++KG IE RNVSFKYP
Sbjct: 954  LAIAETLALTPDIVKGSQALGSVFGIIQRRTAITPNDTNSKIVTDVKGEIEFRNVSFKYP 1013

Query: 1017 VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 1076
            +RPDITIF+NLNL+V AG+SLAVVGQSGSGKSTVISLVMRFYDP SG VL+D  DI+ LN
Sbjct: 1014 MRPDITIFQNLNLRVPAGKSLAVVGQSGSGKSTVISLVMRFYDPDSGLVLVDECDIKNLN 1073

Query: 1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 1136
            LRSLR +IGLVQQEPALFSTT+YENIKYG E+ASEIE+MKA KAANAH FISRMPEGY++
Sbjct: 1074 LRSLRLRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYKT 1133

Query: 1137 HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTT 1196
             VG+RGVQLSGGQKQRVAIARAILK+PSILLLDEATSALDT SE L+QEALDKLMEGRTT
Sbjct: 1134 EVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTT 1193

Query: 1197 IMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1246
            I+VAHRLST+R+A+ IAVLQ G+VAE+GSHE+L+ K   IYKQL+ LQ +
Sbjct: 1194 ILVAHRLSTVRDANSIAVLQNGRVAEMGSHERLMAKSGSIYKQLVSLQHE 1243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437414|ref|XP_004136487.1| PREDICTED: ABC transporter B family member 13-like [Cucumis sativus]

 Score = 1895 bits (4910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 919/1258 (73%), Positives = 1084/1258 (86%), Gaps = 12/1258 (0%)

Query: 1    MEEVELATSGGGGVNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAF 60
            +EE+ELA++G     D N   KM++Q     K S  F  LF AAD IDC+LM  GSLGAF
Sbjct: 31   LEEMELASNGE---LDQNPPTKMEEQEVKLSKMS--FFGLFGAADGIDCLLMVFGSLGAF 85

Query: 61   IHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWM 120
            +HGA+LPVFF+LFGRMIDSLGHLS HPHRL+SRI E+ALYL+YLGL+ L SAWIGVAFWM
Sbjct: 86   VHGASLPVFFVLFGRMIDSLGHLSKHPHRLSSRIVENALYLIYLGLIVLASAWIGVAFWM 145

Query: 121  QTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRY 180
            QTGERQTARLR+KYL S+LKKD++FFDTEA+D NI+FHISSD +LVQDAIGDKTGHA+RY
Sbjct: 146  QTGERQTARLRMKYLNSILKKDINFFDTEAKDFNIMFHISSDMVLVQDAIGDKTGHAMRY 205

Query: 181  LSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEE 240
             SQF VGFA+GFTSVW+LTLLTLA+VPL+A+AG AYT+ MSTLS+KGEAAY +AGK AEE
Sbjct: 206  FSQFIVGFAIGFTSVWKLTLLTLAIVPLVAIAGVAYTVIMSTLSQKGEAAYAQAGKTAEE 265

Query: 241  IISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWY 300
            +I+Q+R VY++VGE+KA+E YS SL+ ALK GK+SG AKG GVG TY LLFCAWALLLWY
Sbjct: 266  VIAQIRTVYSYVGESKALEKYSESLQNALKLGKRSGFAKGFGVGFTYSLLFCAWALLLWY 325

Query: 301  AGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSS 360
            A ILV H +TNGGKAFTTIINVIFSGFALGQA PNLAAIAKG+ AAANI S+I  +  SS
Sbjct: 326  ASILVLHHETNGGKAFTTIINVIFSGFALGQAMPNLAAIAKGRVAAANIFSMIDADYESS 385

Query: 361  ERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTI 420
             R  ++G+ L  +AG+IEFSEV FAYPSRP ++F+ L+FS+ AG+T A VGPSGSGKSTI
Sbjct: 386  SR-SNNGVALSSVAGKIEFSEVSFAYPSRPQLIFDKLSFSISAGRTVAVVGPSGSGKSTI 444

Query: 421  ISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDAS 480
            +SMVQR YEP+SGKILLDGHDL++L+LKWLR QMGLVSQEPALF T+IA NIL G+E+A+
Sbjct: 445  VSMVQRFYEPSSGKILLDGHDLRTLELKWLRRQMGLVSQEPALFNTTIAANILFGQENAT 504

Query: 481  MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
            MD +I AA+ ANAHSF++ LPDGY TQVGE G QLSGGQKQRIAIARAVLRNPKILLLDE
Sbjct: 505  MDEIIAAAEVANAHSFIQELPDGYSTQVGERGIQLSGGQKQRIAIARAVLRNPKILLLDE 564

Query: 541  ATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 600
            ATSALD+ESELIVQ+AL +IM NRTTI++AHRLST+++ DTI VLKNGQ+VESG H +L+
Sbjct: 565  ATSALDSESELIVQQALVRIMLNRTTIIIAHRLSTIQEADTIFVLKNGQIVESGNHSELM 624

Query: 601  SKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSD 660
            SK GEYAAL +LQ    +++ S I   GSSR+SSF++  SS    ++ +S +  +LQS++
Sbjct: 625  SKNGEYAALESLQLPGQVNDSSIISPPGSSRHSSFQEAFSSHNSILDSKSFRETKLQSAN 684

Query: 661  Q-----SFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPH 715
            +     +++P PSIWELLKLNA EWPYA+LGS+GAILAG++APLFALGITH+L+AFYSPH
Sbjct: 685  KDLKTLNYSP-PSIWELLKLNAREWPYAILGSIGAILAGIQAPLFALGITHVLSAFYSPH 743

Query: 716  DSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWF 775
             SQIK  V  VA +FVG+A+ TIP+YLLQHYFYTLMGE LTARVRL +FSAILSNE+GWF
Sbjct: 744  HSQIKEEVHHVAFMFVGVAIFTIPIYLLQHYFYTLMGERLTARVRLLLFSAILSNEVGWF 803

Query: 776  DLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAAS 835
            D DENNTG L S LA++ATLVRSALADR+S IVQNVALTV+AFVIAFI SWRLAAVV AS
Sbjct: 804  DFDENNTGALTSILASNATLVRSALADRISTIVQNVALTVSAFVIAFIFSWRLAAVVVAS 863

Query: 836  LPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASEL 895
            LPLLIGA + EQLFLKGFGGDY +AY+RAT+VA EAIANIRTVAA+G E++IS QFA EL
Sbjct: 864  LPLLIGASITEQLFLKGFGGDYGQAYNRATAVAHEAIANIRTVAAFGAEEKISSQFAFEL 923

Query: 896  SQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIIT 955
            ++PNKQA LRGH++GFGYG+SQ  + CSYALGLWYAS LIK + SNFGDIMKSFMVLIIT
Sbjct: 924  NKPNKQAFLRGHVAGFGYGISQFFAFCSYALGLWYASTLIKHRHSNFGDIMKSFMVLIIT 983

Query: 956  ALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKY 1015
            +LA+AETLAL PDIVKGSQALG VF IL+RKT I  ++P+++ VT I G+IE  NVSFKY
Sbjct: 984  SLAIAETLALTPDIVKGSQALGSVFNILHRKTIIDSNNPSAEMVTNIIGDIEFNNVSFKY 1043

Query: 1016 PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL 1075
            P RPDIT+FE+LNL+VSAG+SLAVVGQSGSGKSTVI+LVMRFYDPISGT+LIDG DI++L
Sbjct: 1044 PARPDITVFEDLNLRVSAGKSLAVVGQSGSGKSTVIALVMRFYDPISGTILIDGRDIKSL 1103

Query: 1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
            NLRSLR KIGLVQQEPALFSTTIYENIKYGN++ASEIE+MKA KAANAHGFISRMP  YQ
Sbjct: 1104 NLRSLRMKIGLVQQEPALFSTTIYENIKYGNQEASEIEVMKAAKAANAHGFISRMPNSYQ 1163

Query: 1136 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1195
            +HVGDRGVQLSGGQKQRVAIARAILK+PSILLLDEATSALD ASE  +QEALD+LMEGRT
Sbjct: 1164 THVGDRGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDAASERQVQEALDRLMEGRT 1223

Query: 1196 TIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEAME 1253
            TI+VAHRL+TIR+A++IAVL+ G+V EIGSH+ LL+  + IYKQL+ LQ +   +++E
Sbjct: 1224 TILVAHRLTTIRDANRIAVLKSGRVVEIGSHDSLLKNPHSIYKQLVNLQHETTVQSLE 1281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515526|ref|XP_004164800.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter B family member 13-like [Cucumis sativus]

 Score = 1888 bits (4890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 916/1255 (72%), Positives = 1080/1255 (86%), Gaps = 12/1255 (0%)

Query: 4    VELATSGGGGVNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHG 63
            +ELA++G     D N   KM++Q     K S     LF AAD IDC+LM  GSLGAF+HG
Sbjct: 1    MELASNGE---LDQNPPTKMEEQEVKLSKMSX--FGLFGAADGIDCLLMVFGSLGAFVHG 55

Query: 64   ATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTG 123
            A+LPVFF+LFGRMIDSLGHLS HPHRL+SRI E+ALYL+YLGL+ L SAWIGVAFWMQTG
Sbjct: 56   ASLPVFFVLFGRMIDSLGHLSKHPHRLSSRIVENALYLIYLGLIVLASAWIGVAFWMQTG 115

Query: 124  ERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQ 183
            ERQTARLR+KYL S+LKKD++FFDTEA+D NI+FHISSD +LVQDAIGDKTGHA+RY SQ
Sbjct: 116  ERQTARLRMKYLNSILKKDINFFDTEAKDFNIMFHISSDMVLVQDAIGDKTGHAMRYFSQ 175

Query: 184  FFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIIS 243
            F VGFA+GFTSVW+LTLLTLA+VPL+A+AG AYT+ MSTLS+KGEAAY +AGK AEE+I+
Sbjct: 176  FIVGFAIGFTSVWKLTLLTLAIVPLVAIAGVAYTVIMSTLSQKGEAAYAQAGKTAEEVIA 235

Query: 244  QVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGI 303
            Q+R VY++VGE+KA+E YS SL+ ALK GK+SG AKG GVG TY LLFCAWALLLWYA I
Sbjct: 236  QIRTVYSYVGESKALEKYSESLQNALKLGKRSGFAKGFGVGFTYSLLFCAWALLLWYASI 295

Query: 304  LVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERP 363
            LV H +TNGGKAFTTIINVIFSGFALGQA PNLAAIAKG+ AAANI S+I  +  SS R 
Sbjct: 296  LVLHHETNGGKAFTTIINVIFSGFALGQAMPNLAAIAKGRVAAANIFSMIDADYESSSR- 354

Query: 364  GDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 423
             ++G+ L  +AG+IEFSEV FAYPSRP ++F+ L+FS+ AG+T A VGPSGSGKSTI+SM
Sbjct: 355  SNNGVALSSVAGKIEFSEVSFAYPSRPQLIFDKLSFSISAGRTVAVVGPSGSGKSTIVSM 414

Query: 424  VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR 483
            VQR YEP+SGKILLDGHDL++L+LKWLR QMGLVSQEPALF T+IA NIL G+E+A+MD 
Sbjct: 415  VQRFYEPSSGKILLDGHDLRTLELKWLRRQMGLVSQEPALFNTTIAANILFGQENATMDE 474

Query: 484  VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
            +I AA+ ANAHSF++ LPDGY TQVGE G QLSGGQKQRIAIARAVLRNPKILLLDEATS
Sbjct: 475  IIAAAEVANAHSFIQELPDGYSTQVGERGIQLSGGQKQRIAIARAVLRNPKILLLDEATS 534

Query: 544  ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603
            ALD+ESELIVQ+AL +IM NRTTI++AHRLST+++ DTI VLKNGQ+VESG H +L+SK 
Sbjct: 535  ALDSESELIVQQALVRIMLNRTTIIIAHRLSTIQEADTIFVLKNGQIVESGNHSELMSKN 594

Query: 604  GEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQ-- 661
            GEYAAL +LQ    +++ S I   GSSR+SSF++  SS    ++ +S +  +LQS+++  
Sbjct: 595  GEYAALESLQLPGQVNDSSIISPPGSSRHSSFQEAFSSHNSILDSKSFRETKLQSANKDL 654

Query: 662  ---SFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQ 718
               +++P PSIWELLKLNA EWPYA+LGS+GAILAG++APLFALGITH+L+AFYSPH SQ
Sbjct: 655  KTLNYSP-PSIWELLKLNAREWPYAILGSIGAILAGIQAPLFALGITHVLSAFYSPHHSQ 713

Query: 719  IKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLD 778
            IK  V  VA +FVG+A+ TIP+YLLQHYFYTLMGE LTARVRL +FSAILSNE+GWFD D
Sbjct: 714  IKEEVHHVAFMFVGVAIFTIPIYLLQHYFYTLMGERLTARVRLLLFSAILSNEVGWFDFD 773

Query: 779  ENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPL 838
            ENNTG L S LA++ATLVRSALADR+S IVQNVALTV+AFVIAFI SWRLAAVV ASLPL
Sbjct: 774  ENNTGALTSILASNATLVRSALADRISTIVQNVALTVSAFVIAFIFSWRLAAVVVASLPL 833

Query: 839  LIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQP 898
            LIGA + EQLFLKGFGGDY +AY+RAT+VA EAIANIRTVAA+G E++IS QFA EL++P
Sbjct: 834  LIGASITEQLFLKGFGGDYGQAYNRATAVAHEAIANIRTVAAFGAEEKISSQFAFELNKP 893

Query: 899  NKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALA 958
            NKQA LRGH++GFGYG+SQ  + CSYALGLWYAS LIK + SNFGDIMKSFMVLIIT+LA
Sbjct: 894  NKQAFLRGHVAGFGYGISQFFAFCSYALGLWYASTLIKHRHSNFGDIMKSFMVLIITSLA 953

Query: 959  VAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVR 1018
            +AETLAL PDIVKGSQALG VF IL+RKT I  ++P+++ VT I G+IE  NVSFKYP R
Sbjct: 954  IAETLALTPDIVKGSQALGSVFNILHRKTIIDSNNPSAEMVTNIIGDIEFNNVSFKYPAR 1013

Query: 1019 PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 1078
            PDIT+FE+LNL+VSAG+SLAVVGQSGSGKSTVI+LVMRFYDPISGT+LIDG DI++LNLR
Sbjct: 1014 PDITVFEDLNLRVSAGKSLAVVGQSGSGKSTVIALVMRFYDPISGTILIDGRDIKSLNLR 1073

Query: 1079 SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHV 1138
            SLR KIGLVQQEPALFSTTIYENIKYGN++ASEIE+MKA KAANAHGFISRMP  YQ+HV
Sbjct: 1074 SLRMKIGLVQQEPALFSTTIYENIKYGNQEASEIEVMKAAKAANAHGFISRMPNSYQTHV 1133

Query: 1139 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIM 1198
            GDRGVQLSGGQKQRVAIARAILK+PSILLLDEATSALD ASE  +QEALD+LMEGRTTI+
Sbjct: 1134 GDRGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDAASERQVQEALDRLMEGRTTIL 1193

Query: 1199 VAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEAME 1253
            VAHRL+TIR+A++IAVL+ G+V EIGSH+ LL+  + IYKQL+ LQ +   +++E
Sbjct: 1194 VAHRLTTIRDANRIAVLKSGRVVEIGSHDSLLKNPHSIYKQLVNLQHETTVQSLE 1248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065781|ref|XP_002301961.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222843687|gb|EEE81234.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]

 Score = 1874 bits (4854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 917/1231 (74%), Positives = 1076/1231 (87%), Gaps = 21/1231 (1%)

Query: 23   MKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGH 82
            M++ +N SKK + S   LF+AADK D  LMFLG +G+  HGA  P+FF+LFG +IDSLGH
Sbjct: 1    MERPSNSSKKPTVSIFGLFSAADKFDHFLMFLGLVGSCAHGAVFPLFFVLFGHLIDSLGH 60

Query: 83   LSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKD 142
            + S PH+++S++S+++L LVYLGL   V+ WIGVA WMQTGERQTARLRLKYLQSVL+KD
Sbjct: 61   VRSDPHQMSSQVSKYSLDLVYLGLGVFVAGWIGVASWMQTGERQTARLRLKYLQSVLRKD 120

Query: 143  MSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLT 202
            M+FFD EARDSNI+FHISSDAILVQDAIGDKTGHA+RYLSQFF+GF  GF SVWQLTLLT
Sbjct: 121  MNFFDIEARDSNILFHISSDAILVQDAIGDKTGHAVRYLSQFFIGFVFGFKSVWQLTLLT 180

Query: 203  LAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYS 262
            LAVVPL+AVAGGAYTI MSTLSEKGEAAY EAGKVA+E ISQ+R VY+FVGE KA+E YS
Sbjct: 181  LAVVPLMAVAGGAYTIIMSTLSEKGEAAYAEAGKVADEAISQIRTVYSFVGEEKALEEYS 240

Query: 263  HSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINV 322
             SLK+ALK GKKSGVAKG+G+G TYGLLFCAW++LLWY+ ILVR GDTNG KAFT I+NV
Sbjct: 241  KSLKKALKLGKKSGVAKGVGIGSTYGLLFCAWSMLLWYSSILVRRGDTNGAKAFTVILNV 300

Query: 323  IFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEV 382
            IFSGFALGQAAPN+AAI+KG+AAAA+I+S+I+ +S  S+    DGI +PK++GQIEF EV
Sbjct: 301  IFSGFALGQAAPNIAAISKGRAAAASIMSMIETDSSPSKNL-VDGIVMPKVSGQIEFCEV 359

Query: 383  CFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL 442
            CF+YPSR +MVFENL+FS+ AGK FA VGPSGSGKST+ISMVQR YEPTSGKILLDGHDL
Sbjct: 360  CFSYPSRSNMVFENLSFSISAGKNFAVVGPSGSGKSTVISMVQRFYEPTSGKILLDGHDL 419

Query: 443  KSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 502
            K+L+LKWLREQMGLVSQEPALFAT+IA NIL GKEDASMD++ EAAKAAN HSFV  LPD
Sbjct: 420  KTLELKWLREQMGLVSQEPALFATTIAGNILFGKEDASMDQIYEAAKAANVHSFVLQLPD 479

Query: 503  GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 562
            GY TQVGEGGTQLSGGQKQR+AIARAVLRNPKILLLDEATSALDAESELIVQ+ALEKIM+
Sbjct: 480  GYHTQVGEGGTQLSGGQKQRLAIARAVLRNPKILLLDEATSALDAESELIVQQALEKIMA 539

Query: 563  NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPS 622
            NRTTIVVAHRLST+RDVDTI+VLKNG VVESG+H++LISKGGEYA++ +LQ SEH+++ S
Sbjct: 540  NRTTIVVAHRLSTIRDVDTIIVLKNGLVVESGSHLELISKGGEYASMASLQVSEHVTDAS 599

Query: 623  SICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQS-----FAPSPSIWELLKLNA 677
            SI +SG++  SSFR+  SS+  +V       REL+S+D++     F+P+PSIWEL+KLNA
Sbjct: 600  SI-HSGTAGKSSFRELTSSQNQEV-----TTRELKSNDENLSPANFSPTPSIWELVKLNA 653

Query: 678  AEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVT 737
             EWPYAVLGSVGA++AGMEAPLFALGITH+LTAFYSP +SQ+K+ V  VALIFVG AVVT
Sbjct: 654  PEWPYAVLGSVGAMMAGMEAPLFALGITHMLTAFYSPDNSQMKKEVHLVALIFVGAAVVT 713

Query: 738  IPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVR 797
            +P+Y+LQHYFYTLMGE L  RVRLSMFSAIL NEIGWFDLDEN+TG L STLAADATLVR
Sbjct: 714  VPIYILQHYFYTLMGERLITRVRLSMFSAILCNEIGWFDLDENSTGSLTSTLAADATLVR 773

Query: 798  SALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDY 857
            S LADRLS +VQNV+LTVTAFVI F LSWR++AV+ A  PLLIGA + E  +        
Sbjct: 774  STLADRLSTMVQNVSLTVTAFVIGFSLSWRVSAVIIACFPLLIGAAITEANY-------- 825

Query: 858  NRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQ 917
             R+Y+RA +VAREAIANIRTVA++G E+RI+ QFASEL++PNKQ LL+GHISG GYG SQ
Sbjct: 826  -RSYTRANAVAREAIANIRTVASFGAEERIAHQFASELNKPNKQVLLQGHISGIGYGASQ 884

Query: 918  LLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALG 977
                C+YALG+WYASV+I    S+F  +MKSFMVL++T+ A+AET+AL PDI+KGSQAL 
Sbjct: 885  FFCFCAYALGIWYASVVISHNESDFDHVMKSFMVLVMTSYAIAETVALTPDIMKGSQALE 944

Query: 978  PVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSL 1037
             VF IL+RKTA+ PDDP SK +T+IKG++ELR+VSFKYP RPD  IFE+LNLKVSAG+SL
Sbjct: 945  SVFSILHRKTAMDPDDPTSKVITDIKGDVELRHVSFKYPARPDTIIFEDLNLKVSAGKSL 1004

Query: 1038 AVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTT 1097
            AVVGQSGSGKSTVI+L++RFYDPISGTVLIDGYD++TLNL+SLRRKIGLVQQEPALFSTT
Sbjct: 1005 AVVGQSGSGKSTVIALILRFYDPISGTVLIDGYDVKTLNLKSLRRKIGLVQQEPALFSTT 1064

Query: 1098 IYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157
            IYENIKYGN++ASEIE+MKA KAANAHGFISRM EGY +HVGDRG+QLSGGQKQR+AIAR
Sbjct: 1065 IYENIKYGNKNASEIEVMKAAKAANAHGFISRMHEGYHTHVGDRGLQLSGGQKQRIAIAR 1124

Query: 1158 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1217
            AILK+PSILLLDEATSALDTASE L+QEALDKLMEGRTT++VAHRLST+R+AD IAV+Q 
Sbjct: 1125 AILKDPSILLLDEATSALDTASEKLVQEALDKLMEGRTTVLVAHRLSTVRDADSIAVIQH 1184

Query: 1218 GKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1248
            G+V EIGSH QL+ K +G+YKQL+ LQQ+K+
Sbjct: 1185 GRVVEIGSHNQLIGKPSGVYKQLVSLQQEKS 1215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851228|ref|XP_002893495.1| P-glycoprotein 13 [Arabidopsis lyrata subsp. lyrata] gi|297339337|gb|EFH69754.1| P-glycoprotein 13 [Arabidopsis lyrata subsp. lyrata]

 Score = 1805 bits (4674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 878/1216 (72%), Positives = 1035/1216 (85%), Gaps = 5/1216 (0%)

Query: 34   SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSR 93
            S S + LF+AADK+D  LM LG LGA IHGATLP+FF+ FG+M+DSLG+LS+ P  ++SR
Sbjct: 30   SVSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLDSLGNLSTDPKAISSR 89

Query: 94   ISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDS 153
            +S++ALYLVYLGLV LVSAWIGV+ WMQTGERQTARLR+ YL+S+L KD++FFDTEARDS
Sbjct: 90   VSQNALYLVYLGLVNLVSAWIGVSCWMQTGERQTARLRINYLKSILAKDITFFDTEARDS 149

Query: 154  NIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAG 213
            N+IFHISSDAILVQDAIGDKT H LRYLSQF  GF +GF SVWQLTLLTLAVVPLIAVAG
Sbjct: 150  NLIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLAVVPLIAVAG 209

Query: 214  GAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK 273
            G Y I MST+SEK E AY +AGKVAEE++SQVR VYAFVGE KA++SYS+SLK+ALK GK
Sbjct: 210  GGYAIIMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGK 269

Query: 274  KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 333
            +SG+AKG+GVGLTY LLFC+WALLLWYA +LVRHG TNG KAFTTI+NVIFSGFALGQAA
Sbjct: 270  RSGLAKGLGVGLTYSLLFCSWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAA 329

Query: 334  PNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMV 393
            P+L+AIAKG+ AAANI  +I  N+  S    ++G TL  +AG+IEF +V FAYPSRP+MV
Sbjct: 330  PSLSAIAKGRVAAANIFRMIGNNNLESSERLENGTTLQNVAGRIEFHQVSFAYPSRPNMV 389

Query: 394  FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
            FENL+F++ +GKTFAFVGPSGSGKSTIISMVQR YEP SGKILLDG+D+KSL+LKWLRE 
Sbjct: 390  FENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGKILLDGNDIKSLKLKWLREH 449

Query: 454  MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
            +GLVSQEPALFAT+IA+NI+ GKE+A+MD++IEAAKAANA SF++ LP+GY TQVGEGGT
Sbjct: 450  LGLVSQEPALFATTIASNIIFGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGT 509

Query: 514  QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573
            QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE IVQ+AL+ I  NRTTIVVAHRL
Sbjct: 510  QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNITENRTTIVVAHRL 569

Query: 574  STVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSI----CYSGS 629
            ST+R+VD I+VL+NGQV E+G+H +L+S+GG+YA LVN Q +E   N  SI    C S +
Sbjct: 570  STIRNVDKIVVLRNGQVTETGSHSELMSRGGDYATLVNCQETEPQENSRSIMSETCKSQA 629

Query: 630  SRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVG 689
               SS R   SSRR     E   + E  S+D+ F+ S  IWEL+KLN+ EWPYA+LGS+G
Sbjct: 630  GSSSS-RRISSSRRTSSFREDQVKTENDSNDKDFSSSSMIWELIKLNSPEWPYALLGSIG 688

Query: 690  AILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYT 749
            A+LAG + PLF++GI ++LTAFYSP  + I R V++VA+IFVG+ +VT P+YLLQHYFYT
Sbjct: 689  AVLAGAQTPLFSMGIAYVLTAFYSPFPNAIMRDVEKVAIIFVGVGIVTAPIYLLQHYFYT 748

Query: 750  LMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQ 809
            LMGE LT+RVRLS+FSAILSNEIGWFDLDENNTG L S LAADATLVRSALADRLS IVQ
Sbjct: 749  LMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSALADRLSTIVQ 808

Query: 810  NVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAR 869
            N++LTVTA  +AF  SWR+AAVV A  PLLI A + EQLFLKGFGGDY RAYSRATSVAR
Sbjct: 809  NLSLTVTALALAFYYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSVAR 868

Query: 870  EAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLW 929
            EAIANIRTVAA+G EK+I+ QF  ELS+P K A +RGHISGFGYG+SQ L+ CSYALGLW
Sbjct: 869  EAIANIRTVAAFGAEKQIAEQFTCELSKPTKNAFVRGHISGFGYGLSQFLAFCSYALGLW 928

Query: 930  YASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAI 989
            Y SV IK K +NFGD +KSFMVLI+TA +V+ETLAL PDIVKG+QALG VF +L+R+T I
Sbjct: 929  YVSVSIKNKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKGTQALGSVFRVLHRETEI 988

Query: 990  QPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKST 1049
             PD P S+ V++IKG+IE RNVSF YP RPDI IF+NLNL+VSAG+SLAVVG SGSGKST
Sbjct: 989  PPDQPNSRMVSQIKGDIEFRNVSFVYPTRPDINIFQNLNLRVSAGKSLAVVGPSGSGKST 1048

Query: 1050 VISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDA 1109
            VI L+MRFYDP  G + IDG DI+TLNLRSLR+K+ LVQQEPALFSTTI+ENIKYGNE+A
Sbjct: 1049 VIGLIMRFYDPSHGNLCIDGQDIKTLNLRSLRKKLALVQQEPALFSTTIHENIKYGNENA 1108

Query: 1110 SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 1169
            SE E+++A KAANAH FISRM EGY+++VGD+GVQLSGGQKQRVAIARA+LK+PS+LLLD
Sbjct: 1109 SESEIIEAAKAANAHEFISRMEEGYKTYVGDKGVQLSGGQKQRVAIARAVLKDPSVLLLD 1168

Query: 1170 EATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            EATSALDT+SE L+QEALDKLM+GRTT++VAHRLSTIR AD IAVL +G+V E GSH +L
Sbjct: 1169 EATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTIAVLHKGRVVEKGSHREL 1228

Query: 1230 LRKENGIYKQLIRLQQ 1245
            +   NG YKQL  LQ+
Sbjct: 1229 VSIPNGFYKQLTNLQE 1244

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217776|ref|NP_174115.1| ABC transporter B family member 13 [Arabidopsis thaliana] gi|75333473|sp|Q9C7F8.1|AB13B_ARATH RecName: Full=ABC transporter B family member 13; Short=ABC transporter ABCB.13; Short=AtABCB13; AltName: Full=P-glycoprotein 13; AltName: Full=Putative multidrug resistance protein 15 gi|12322992|gb|AAG51482.1|AC069471_13 P-glycoprotein, putative [Arabidopsis thaliana] gi|332192772|gb|AEE30893.1| ABC transporter B family member 13 [Arabidopsis thaliana]

 Score = 1792 bits (4641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1218 (71%), Positives = 1028/1218 (84%), Gaps = 9/1218 (0%)

Query: 34   SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSR 93
            S S + LF+AADK+D  LM LG LGA IHGATLP+FF+ FG+M+DSLG+LS+ P  ++SR
Sbjct: 29   SVSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLDSLGNLSTDPKAISSR 88

Query: 94   ISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDS 153
            +S++ALYLVYLGLV  VSAWIGV+ WMQTGERQTARLR+ YL+S+L KD++FFDTEARDS
Sbjct: 89   VSQNALYLVYLGLVNFVSAWIGVSCWMQTGERQTARLRINYLKSILAKDITFFDTEARDS 148

Query: 154  NIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAG 213
            N+IFHISSDAILVQDAIGDKT H LRYLSQF  GF +GF SVWQLTLLTL VVPLIA+AG
Sbjct: 149  NLIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAG 208

Query: 214  GAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK 273
            G Y I MST+SEK E AY +AGKVAEE++SQVR VYAFVGE KA++SYS+SLK+ALK GK
Sbjct: 209  GGYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGK 268

Query: 274  KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 333
            +SG+AKG+GVGLTY LLFCAWALLLWYA +LVRHG TNG KAFTTI+NVIFSGFALGQAA
Sbjct: 269  RSGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAA 328

Query: 334  PNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMV 393
            P+L+AIAKG+ AAANI  +I  N+  S +  D+G TL  +AG+IEF +V FAYPSRP+MV
Sbjct: 329  PSLSAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPNMV 388

Query: 394  FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
            FENL+F++ +GKTFAFVGPSGSGKSTIISMVQR YEP SG+ILLDG+D+KSL+LKW REQ
Sbjct: 389  FENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFREQ 448

Query: 454  MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
            +GLVSQEPALFAT+IA+NILLGKE+A+MD++IEAAKAANA SF++ LP+GY TQVGEGGT
Sbjct: 449  LGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGT 508

Query: 514  QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573
            QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE IVQ+AL+ +M  RTTIVVAHRL
Sbjct: 509  QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRL 568

Query: 574  STVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSI----CYS-- 627
            ST+R+VD I+VL++GQV E+G+H +L+ +GG+YA LVN Q +E   N  SI    C S  
Sbjct: 569  STIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQETEPQENSRSIMSETCKSQA 628

Query: 628  GSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGS 687
            GSS          +  + V+ E +K  + +    S   S  IWEL+KLN+ EWPYA+LGS
Sbjct: 629  GSSSSRRVSSSRRTSSFRVDQEKTKNDDSKKDFSS---SSMIWELIKLNSPEWPYALLGS 685

Query: 688  VGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF 747
            +GA+LAG + PLF++GI ++LTAFYSP  + IKR V++VA+IF G  +VT P+YLLQHYF
Sbjct: 686  IGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAGAGIVTAPIYLLQHYF 745

Query: 748  YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSII 807
            YTLMGE LT+RVRLS+FSAILSNEIGWFDLDENNTG L S LAADATLVRSALADRLS I
Sbjct: 746  YTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSALADRLSTI 805

Query: 808  VQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSV 867
            VQN++LTVTA  +AF  SWR+AAVV A  PLLI A + EQLFLKGFGGDY RAYSRATSV
Sbjct: 806  VQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSV 865

Query: 868  AREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALG 927
            AREAIANIRTVAAYG EK+IS QF  ELS+P K A +RGHISGFGYG+SQ L+ CSYALG
Sbjct: 866  AREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFGYGLSQFLAFCSYALG 925

Query: 928  LWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKT 987
            LWY SVLI  K +NFGD +KSFMVLI+TA +V+ETLAL PDIVKG+QALG VF +L+R+T
Sbjct: 926  LWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKGTQALGSVFRVLHRET 985

Query: 988  AIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGK 1047
             I PD P S+ V+++KG+IE RNVSF YP RP+I IF+NLNL+VSAG+SLAVVG SGSGK
Sbjct: 986  KISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLNLRVSAGKSLAVVGPSGSGK 1045

Query: 1048 STVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE 1107
            STVI L+MRFYDP +G + IDG DI+TLNLRSLR+K+ LVQQEPALFSTTIYENIKYGNE
Sbjct: 1046 STVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQQEPALFSTTIYENIKYGNE 1105

Query: 1108 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 1167
            +ASE E+M+A KAANAH FI +M EGY++H GD+GVQLSGGQKQRVAIARA+LK+PS+LL
Sbjct: 1106 NASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGGQKQRVAIARAVLKDPSVLL 1165

Query: 1168 LDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1227
            LDEATSALDT+SE L+QEALDKLM+GRTT++VAHRLSTIR AD +AVL +G+V E GSH 
Sbjct: 1166 LDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRVVEKGSHR 1225

Query: 1228 QLLRKENGIYKQLIRLQQ 1245
            +L+   NG YKQL  LQ+
Sbjct: 1226 ELVSIPNGFYKQLTSLQE 1243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1253
TAIR|locus:2010464	1245	ABCB13 "ATP-binding cassette B	0.972	0.979	0.672	0.0
TAIR|locus:2010444	1247	ABCB14 "ATP-binding cassette B	0.974	0.979	0.666	0.0
TAIR|locus:2090734	1252	ABCB19 "ATP-binding cassette B	0.971	0.972	0.490	0.0
UNIPROTKB|Q0JCP1	1259	Os04g0459000 "Os04g0459000 pro	0.481	0.478	0.504	5.20000000001e-314
TAIR|locus:2057961	1286	ABCB1 "ATP-binding cassette B1	0.463	0.451	0.505	3.5e-308
TAIR|locus:2120805	1273	ABCB2 "ATP-binding cassette B2	0.972	0.956	0.476	8.8e-308
UNIPROTKB|Q8GU75	1264	mdr11 "MDR-like ABC transporte	0.970	0.962	0.479	1.8e-307
TAIR|locus:2019958	1227	PGP10 "P-glycoprotein 10" [Ara	0.968	0.989	0.469	5e-305
UNIPROTKB|Q7EZL2	1344	P0705A05.112-2 "Putative P-gly	0.458	0.427	0.5	4e-296
TAIR|locus:2088897	1240	ABCB15 "ATP-binding cassette B	0.960	0.970	0.426	8.9e-260

TAIR|locus:2010464 ABCB13 "ATP-binding cassette B13" [Arabidopsis thaliana (taxid:3702)]

 Score = 4196 (1482.1 bits), Expect = 0., P = 0.
 Identities = 826/1228 (67%), Positives = 980/1228 (79%)

Query:    24 KQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHL 83
             K++    KK+S S + LF+AADK+D  LM LG LGA IHGATLP+FF+ FG+M+DSLG+L
Sbjct:    19 KEEKKNIKKESVSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLDSLGNL 78

Query:    84 SSHPHRLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDM 143
             S+ P  ++SR+S++             SAWIGV+ WMQTGERQTARLR+ YL+S+L KD+
Sbjct:    79 STDPKAISSRVSQNALYLVYLGLVNFVSAWIGVSCWMQTGERQTARLRINYLKSILAKDI 138

Query:   144 SFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTL 203
             +FFDTEARDSN+IFHISSDAILVQDAIGDKT H LRYLSQF  GF +GF SVWQLTLLTL
Sbjct:   139 TFFDTEARDSNLIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTL 198

Query:   204 AVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSH 263
              VVPLIA+AGG Y I MST+SEK E AY +AGKVAEE++SQVR VYAFVGE KA++SYS+
Sbjct:   199 GVVPLIAIAGGGYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSN 258

Query:   264 SLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVI 323
             SLK+ALK GK+SG+AKG+GVGLTY LLFCAWALLLWYA +LVRHG TNG KAFTTI+NVI
Sbjct:   259 SLKKALKLGKRSGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVI 318

Query:   324 FSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDGITLPKLAGQIEFSEVC 383
             FSGFALGQ                         +  S +  D+G TL  +AG+IEF +V 
Sbjct:   319 FSGFALGQAAPSLSAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQKVS 378

Query:   384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443
             FAYPSRP+MVFENL+F++ +GKTFAFVGPSGSGKSTIISMVQR YEP SG+ILLDG+D+K
Sbjct:   379 FAYPSRPNMVFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIK 438

Query:   444 SLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDG 503
             SL+LKW REQ+GLVSQEPALFAT+IA+NILLGKE+A+MD++IEAAKAANA SF++ LP+G
Sbjct:   439 SLKLKWFREQLGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNG 498

Query:   504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 563
             Y TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE IVQ+AL+ +M  
Sbjct:   499 YNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEK 558

Query:   564 RTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPXX 623
             RTTIVVAHRLST+R+VD I+VL++GQV E+G+H +L+ +GG+YA LVN Q +E   N   
Sbjct:   559 RTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQETEPQENSRS 618

Query:   624 XXXXX---XXXXXXFRDFPSSRR---YDVEFESSKRRELQSSDQSFAPSPSIWELLKLNA 677
                            R   SSRR   + V+ E +K  +   S + F+ S  IWEL+KLN+
Sbjct:   619 IMSETCKSQAGSSSSRRVSSSRRTSSFRVDQEKTKNDD---SKKDFSSSSMIWELIKLNS 675

Query:   678 AEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVT 737
              EWPYA+LGS+GA+LAG + PLF++GI ++LTAFYSP  + IKR V++VA+IF G  +VT
Sbjct:   676 PEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAGAGIVT 735

Query:   738 IPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVR 797
              P+YLLQHYFYTLMGE LT+RVRLS+FSAILSNEIGWFDLDENNTG L S LAADATLVR
Sbjct:   736 APIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVR 795

Query:   798 SALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDY 857
             SALADRLS IVQN++LTVTA  +AF  SWR            I A + EQLFLKGFGGDY
Sbjct:   796 SALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDY 855

Query:   858 NRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQ 917
              RAYSRATSVAREAIANIRTVAAYG EK+IS QF  ELS+P K A +RGHISGFGYG+SQ
Sbjct:   856 TRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFGYGLSQ 915

Query:   918 LLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALG 977
              L+ CSYALGLWY SVLI  K +NFGD +KSFMV               PDIVKG+QALG
Sbjct:   916 FLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKGTQALG 975

Query:   978 PVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSL 1037
              VF +L+R+T I PD P S+ V+++KG+IE RNVSF YP RP+I IF+NLNL+VSAG+SL
Sbjct:   976 SVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLNLRVSAGKSL 1035

Query:  1038 AVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTT 1097
             AVVG SGSGKSTVI L+MRFYDP +G + IDG DI+TLNLRSLR+K+ LVQQEPALFSTT
Sbjct:  1036 AVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQQEPALFSTT 1095

Query:  1098 IYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157
             IYENIKYGNE+ASE E+M+A KAANAH FI +M EGY++H GD+GVQLSGGQKQRVAIAR
Sbjct:  1096 IYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGGQKQRVAIAR 1155

Query:  1158 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1217
             A+LK+PS+LLLDEATSALDT+SE L+QEALDKLM+GRTT++VAHRLSTIR AD +AVL +
Sbjct:  1156 AVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHK 1215

Query:  1218 GKVAEIGSHEQLLRKENGIYKQLIRLQQ 1245
             G+V E GSH +L+   NG YKQL  LQ+
Sbjct:  1216 GRVVEKGSHRELVSIPNGFYKQLTSLQE 1243

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2010444 ABCB14 "ATP-binding cassette B14" [Arabidopsis thaliana (taxid:3702)]

 Score = 4130 (1458.9 bits), Expect = 0., P = 0.
 Identities = 818/1227 (66%), Positives = 972/1227 (79%)

Query:    24 KQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHL 83
             K++    KK+S S + LF+AAD +D  LMFLG LG  IHG TLP+FF+ FG M+DSLG L
Sbjct:    20 KEEKKKMKKESVSLMGLFSAADNVDYFLMFLGGLGTCIHGGTLPLFFVFFGGMLDSLGKL 79

Query:    84 SSHPHRLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDM 143
             S+ P+ ++SR+S++             SAWIGVA WMQTGERQTARLR+ YL+S+L KD+
Sbjct:    80 STDPNAISSRVSQNALYLVYLGLVNLVSAWIGVACWMQTGERQTARLRINYLKSILAKDI 139

Query:   144 SFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTL 203
             +FFDTEARDSN IFHISSDAILVQDAIGDKTGH LRYL QF  GF +GF SVWQLTLLTL
Sbjct:   140 TFFDTEARDSNFIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLLTL 199

Query:   204 AVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSH 263
              VVPLIA+AGG Y I MST+SEK EAAY +AGKVAEE++SQVR VYAFVGE KA++SYS+
Sbjct:   200 GVVPLIAIAGGGYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSN 259

Query:   264 SLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVI 323
             SLK+ALK  K+SG+AKG+GVGLTY LLFCAWALL WYA +LVRHG TNG KAFTTI+NVI
Sbjct:   260 SLKKALKLSKRSGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVI 319

Query:   324 FSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXS-HSSERPGDDGITLPKLAGQIEFSEV 382
             +SGFALGQ                         +  SSER  ++G TL  + G+IEF  V
Sbjct:   320 YSGFALGQAVPSLSAISKGRVAAANIFKMIGNNNLESSERL-ENGTTLQNVVGKIEFCGV 378

Query:   383 CFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL 442
              FAYPSRP+MVFENL+F++ +GKTFAFVGPSGSGKSTIISMVQR YEP SG+ILLDG+D+
Sbjct:   379 SFAYPSRPNMVFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDI 438

Query:   443 KSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 502
             K+L+LKWLREQMGLVSQEPALFAT+IA+NILLGKE A+MD++IEAAKAANA SF++ LP+
Sbjct:   439 KNLKLKWLREQMGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPN 498

Query:   503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 562
             GY TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE IVQ+AL+ +M 
Sbjct:   499 GYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVME 558

Query:   563 NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSE---HLS 619
              RTTIV+AHRLST+R+VD I+VL++GQV E+G+H +LIS+GG+YA LVN Q +E   +L 
Sbjct:   559 KRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQDTEPQENLR 618

Query:   620 NPXXXXXXXXXXXXXFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPS-IWELLKLNAA 678
             +               R   SSRR     E  ++ E  S  +    S S IWEL+KLNA 
Sbjct:   619 SVMYESCRSQAGSYSSRRVFSSRRTSSFREDQEKTEKDSKGEDLISSSSMIWELIKLNAP 678

Query:   679 EWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTI 738
             EW YA+LGS+GA+LAG +  LF++G+ ++LT FYSP  S IKR VD+VA+IFVG  +VT 
Sbjct:   679 EWLYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVGAGIVTA 738

Query:   739 PVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRS 798
             P+Y+LQHYFYTLMGE LT+RVRLS+FSAILSNEIGWFDLDENNTG L S LAADATLVRS
Sbjct:   739 PIYILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRS 798

Query:   799 ALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYN 858
             A+ADRLS IVQN++LT+TA  +AF  SWR            I A + EQLFLKGFGGDY 
Sbjct:   799 AIADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYT 858

Query:   859 RAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQL 918
             RAYSRATS+AREAI+NIRTVAA+  EK+IS QF  ELS+P K ALLRGHISGFGYG+SQ 
Sbjct:   859 RAYSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGYGLSQC 918

Query:   919 LSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGP 978
             L+ CSYALGLWY SVLIK+  +NF D +KSFMV               PDIVKG+QALG 
Sbjct:   919 LAFCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKGTQALGS 978

Query:   979 VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 1038
             VF +L+R+T I PD P S+ VT IKG+IE RNVSF YP RP+I IF+NLNL+VSAG+SLA
Sbjct:   979 VFRVLHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSAGKSLA 1038

Query:  1039 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 1098
             VVG SGSGKSTVI L+MRFYDP +G + IDG+DI+++NLRSLR+K+ LVQQEPALFST+I
Sbjct:  1039 VVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPALFSTSI 1098

Query:  1099 YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158
             +ENIKYGNE+ASE E+++A KAANAH FISRM EGY +HVGD+GVQLSGGQKQRVAIARA
Sbjct:  1099 HENIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRVAIARA 1158

Query:  1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQG 1218
             +LK+PS+LLLDEATSALDT++E  +QEALDKLM+GRTTI+VAHRLSTIR AD I VL +G
Sbjct:  1159 VLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKG 1218

Query:  1219 KVAEIGSHEQLLRKENGIYKQLIRLQQ 1245
             KV E GSH +L+ K +G YK+L  LQ+
Sbjct:  1219 KVVEKGSHRELVSKSDGFYKKLTSLQE 1245

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)]

 Score = 3062 (1082.9 bits), Expect = 0., P = 0.
 Identities = 606/1236 (49%), Positives = 843/1236 (68%)

Query:    26 QTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSS 85
             +    K+QS  F  LF+ ADK D +LMF+GSLGA +HG+++PVFF+LFG+M++  G    
Sbjct:    15 EAEKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQM 74

Query:    86 HPHRLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSF 145
               H++   +S +             S++  +A WM +GERQ A LR KYL++VLK+D+ F
Sbjct:    75 DLHQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGF 134

Query:   146 FDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAV 205
             FDT+AR  +I+F +S+D +LVQDAI +K G+ + YLS F  G  VGF S W+L LL++AV
Sbjct:   135 FDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAV 194

Query:   206 VPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSL 265
             +P IA AGG Y  T++ ++ K   +Y  AG +AE+ I+QVR VY++VGE+KA+ +YS ++
Sbjct:   195 IPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAI 254

Query:   266 KEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFS 325
             +  LK G K+G+AKG+G+G TYG+   +WAL+ WYAG+ +R+G T+GGKAFT I + I  
Sbjct:   255 QYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVG 314

Query:   326 GFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDGITLPKLAGQIEFSEVCFA 385
             G +LGQ                             + P D G  L ++ G IEF +V F+
Sbjct:   315 GMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLD-GKCLDQVHGNIEFKDVTFS 373

Query:   386 YPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 444
             YPSRP  M+F N N    +GKT A VG SGSGKST++S+++R Y+P SG+ILLDG ++K+
Sbjct:   374 YPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKT 433

Query:   445 LQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
             LQLK+LREQ+GLV+QEPALFAT+I  NIL GK DA+M  V  AA AANAHSF+  LP GY
Sbjct:   434 LQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGY 493

Query:   505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564
              TQVGE G QLSGGQKQRIAIARA+L++PKILLLDEATSALDA SE IVQ AL+++M  R
Sbjct:   494 DTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGR 553

Query:   565 TTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS---SEHLSNP 621
             TT+VVAHRL T+R+VD+I V++ GQVVE+GTH +LI+K G YA+L+  Q    +   SNP
Sbjct:   554 TTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIRFQEMVGTRDFSNP 613

Query:   622 XXXXXXXXXXXXXFRDFPSSRR--------YDVEFESSKRRELQSSDQSF----APSPSI 669
                                S R        Y     +  R E+ S+ ++     AP    
Sbjct:   614 STRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKTRAPENYF 673

Query:   670 WELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFY-SPHDSQIKRVVDQVAL 728
             + LLKLN+ EWPY+++G+VG+IL+G   P FA+ +++++  FY + +DS ++R   +   
Sbjct:   674 YRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDS-MERKTKEYVF 732

Query:   729 IFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLIST 788
             I++G  +  +  YL+QHYF+++MGE+LT RVR  M SAIL NE+GWFD DE+N+ L+ + 
Sbjct:   733 IYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAAR 792

Query:   789 LAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQL 848
             LA DA  V+SA+A+R+S+I+QN+   +T+F++AFI+ WR            + A  A+QL
Sbjct:   793 LATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQL 852

Query:   849 FLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHI 908
              LKGF GD  +A+++ + +A E ++NIRTVAA+  + +I   F  EL  P K++L R   
Sbjct:   853 SLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQT 912

Query:   909 SGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPD 968
             SGF +G+SQL    S AL LWY + L+ +  S F  ++K F+V               P+
Sbjct:   913 SGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPE 972

Query:   969 IVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLN 1028
             I++G +A+G VF +L R+T I PDD  +  V  I+G+IE R+V F YP RPD+ +F + N
Sbjct:   973 IIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFN 1032

Query:  1029 LKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQ 1088
             L++ AG S A+VG SGSGKS+VI+++ RFYDP++G V+IDG DIR LNL+SLR KIGLVQ
Sbjct:  1033 LRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQ 1092

Query:  1089 QEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148
             QEPALF+ TI++NI YG + A+E E++ A +AANAHGFIS +PEGY++ VG+RGVQLSGG
Sbjct:  1093 QEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGG 1152

Query:  1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN 1208
             QKQR+AIARA+LKNP++LLLDEATSALD  SE ++QEAL++LM GRTT++VAHRLSTIR 
Sbjct:  1153 QKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRG 1212

Query:  1209 ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
              D I V+Q G++ E GSH +L+ +  G Y +L++LQ
Sbjct:  1213 VDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQ 1248

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0010540 "basipetal auxin transport" evidence=IMP

GO:0008361 "regulation of cell size" evidence=RCA;IMP

GO:0009637 "response to blue light" evidence=RCA;IMP

GO:0009639 "response to red or far red light" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA;IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010218 "response to far red light" evidence=RCA;IMP

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA;IMP

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010541 "acropetal auxin transport" evidence=IMP

GO:0048364 "root development" evidence=RCA;IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0048443 "stamen development" evidence=IGI;RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1550 (550.7 bits), Expect = 5.2e-314, Sum P(2) = 5.2e-314
 Identities = 309/612 (50%), Positives = 417/612 (68%)

Query:     5 ELATSGGGGVNDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGA 64
             E  + GGGG         +K++ +    QS +F  LF  AD +D +LM  GS GA +HGA
Sbjct:     4 ESGSCGGGGGGGGGC-EAVKKRVD----QSVAFHELFGFADPLDWLLMAAGSAGAVVHGA 58

Query:    65 TLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGE 124
              +PVFF+LFG +I+  G       R+T  +S++             S+++ +A WM TGE
Sbjct:    59 AMPVFFLLFGELINGFGKNQHSLRRMTDEVSKYSLYFVYLGLVVCASSYLEIACWMYTGE 118

Query:   125 RQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQF 184
             RQ   LR +YL++VL++D+ FFDT+AR  +++F +S+D +LVQDAIG+K G+ + YLS F
Sbjct:   119 RQVGALRRRYLEAVLRQDVGFFDTDARTGDVVFSVSTDTLLVQDAIGEKVGNFIHYLSTF 178

Query:   185 FVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQ 244
               G  VGF S W+L LL++AV+P IA AGG Y  T++ L+ K   +Y  AG +AE+ I+Q
Sbjct:   179 LAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQ 238

Query:   245 VRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGIL 304
             VR VY++VGE+KA+ SYS +++  LK G K+G+AKG+G+G TYG+   +WAL+ WYAG+ 
Sbjct:   239 VRTVYSYVGESKALNSYSEAIQNTLKLGYKAGMAKGLGIGCTYGIACMSWALVFWYAGVF 298

Query:   305 VRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPG 364
             +R+G T+GGKAFT I + I  G +LGQ                             + P 
Sbjct:   299 IRNGQTDGGKAFTAIFSAIVGGLSLGQSFSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPA 358

Query:   365 DDGITLPKLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 423
             D G  L ++ G IEF EV F+YPSRP  M+F + +    AGKT A VG SGSGKST++++
Sbjct:   359 D-GRCLDEVHGNIEFKEVAFSYPSRPDVMIFRDFSLFFPAGKTAAVVGGSGSGKSTVVAL 417

Query:   424 VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR 483
             ++R Y+P  G++LLD  D+K+LQLKWLR+Q+GLV+QEPALFAT+I  NIL GK DA+M  
Sbjct:   418 IERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAE 477

Query:   484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
             V  AA +ANAHSF+  LP+GY TQVGE G QLSGGQKQRIAIARA+L+NPKILLLDEATS
Sbjct:   478 VEAAATSANAHSFIALLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATS 537

Query:   544 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603
             ALDA SE IVQ AL+++M  RTT+VVAHRLST+R VD I V++ GQVVE+GTH +L++KG
Sbjct:   538 ALDAGSENIVQEALDRLMVGRTTVVVAHRLSTIRCVDMIAVIQQGQVVETGTHDELLAKG 597

Query:   604 --GEYAALVNLQ 613
               G YAAL+  Q
Sbjct:   598 SSGAYAALIRFQ 609

GO:0005886 "plasma membrane" evidence=IBA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1524 (541.5 bits), Expect = 3.5e-308, Sum P(2) = 3.5e-308
 Identities = 296/585 (50%), Positives = 403/585 (68%)

Query:    36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRIS 95
             +F  LF  AD +D VLM +GS+GAF+HG +LP+F   F  +++S G  S++  ++   + 
Sbjct:    28 AFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVEKMMEEVL 87

Query:    96 EHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNI 155
             ++             S+W  ++ WM +GERQT ++R+KYL++ L +D+ FFDTE R S++
Sbjct:    88 KYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEVRTSDV 147

Query:   156 IFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGA 215
             +F I++DA++VQDAI +K G+ + Y++ F  GF VGFT+VWQL L+TLAVVPLIAV GG 
Sbjct:   148 VFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGGI 207

Query:   216 YTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS 275
             +T T+S LS K + +  +AG + E+ + Q+R V AFVGE++A ++YS +LK A K G K+
Sbjct:   208 HTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYKT 267

Query:   276 GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXX 335
             G+AKG+G+G TY ++FC +ALLLWY G LVRH  TNGG A  T+  V+  G ALGQ    
Sbjct:   268 GLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAPS 327

Query:   336 XXXXXXXXXXXXXXXXXXXXXSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VF 394
                                    + ER  + G+ L  + G +E   V F+YPSRP + + 
Sbjct:   328 MAAFAKAKVAAAKIFRIIDHKP-TIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKIL 386

Query:   395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
              N   SV AGKT A VG SGSGKST++S+++R Y+P SG++LLDG DLK+L+L+WLR+Q+
Sbjct:   387 NNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQI 446

Query:   455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514
             GLVSQEPALFATSI  NILLG+ DA    + EAA+ ANAHSF+  LPDG+ TQVGE G Q
Sbjct:   447 GLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQ 506

Query:   515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 574
             LSGGQKQRIAIARA+L+NP ILLLDEATSALD+ESE +VQ AL++ M  RTT+++AHRLS
Sbjct:   507 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLS 566

Query:   575 TVRDVDTIMVLKNGQVVESGTHVDLISKG--GEYAALVNLQSSEH 617
             T+R  D + VL+ G V E GTH +L SKG  G YA L+ +Q + H
Sbjct:   567 TIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAH 611

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008361 "regulation of cell size" evidence=RCA;IMP

GO:0009637 "response to blue light" evidence=RCA;IMP

GO:0009639 "response to red or far red light" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA;IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IGI

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA;IMP

GO:0009926 "auxin polar transport" evidence=RCA;IMP;TAS

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0048443 "stamen development" evidence=IGI;RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2120805 ABCB2 "ATP-binding cassette B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2953 (1044.6 bits), Expect = 8.8e-308, P = 8.8e-308
 Identities = 588/1233 (47%), Positives = 836/1233 (67%)

Query:    22 KMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLG 81
             K K+ T P      S L LF+ AD  DCVLM LGS+GA IHGA++P+FFI FG++I+ +G
Sbjct:    51 KEKEMTQPKV----SLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIG 106

Query:    82 HLSSHPHRLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLKK 141
                  P + + R++++             S+W+ VA WM TGERQ A++R  YL+S+L +
Sbjct:   107 LAYLFPKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQ 166

Query:   142 DMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLL 201
             D+S FDTEA    +I  I+SD ++VQDA+ +K G+ L Y+S+F  GFA+GFTSVWQ++L+
Sbjct:   167 DISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLV 226

Query:   202 TLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESY 261
             TL++VPLIA+AGG Y      L  +   +Y +AG++AEE+I  VR V AF GE +A+  Y
Sbjct:   227 TLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLY 286

Query:   262 SHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIIN 321
               +L+   K G+K+G+ KG+G+G  + +LF +WALL+W+  ++V     +GGK+FTT++N
Sbjct:   287 REALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLN 346

Query:   322 VIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDGITLPKLAGQIEFSE 381
             V+ +G +LGQ                         +  ++     G  L K+ G I+F +
Sbjct:   347 VVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNT-VTKTSAKSGRKLGKVDGHIQFKD 405

Query:   382 VCFAYPSRPHMV-FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 440
               F+YPSRP +V F+ LN ++ AGK  A VG SGSGKST+IS+++R YEP SG +LLDG+
Sbjct:   406 ATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGN 465

Query:   441 DLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 500
             ++  L +KWLR Q+GLV+QEPALFAT+I  NIL GK+DA+ + +  AAK + A SF+  L
Sbjct:   466 NISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNL 525

Query:   501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
             P+G++TQVGE G QLSGGQKQRIAI+RA+++NP ILLLDEATSALDAESE  VQ AL+++
Sbjct:   526 PEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRV 585

Query:   561 MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQSSEHLS 619
             M  RTT+VVAHRLSTVR+ D I V+  G++VE G H +LIS   G Y++L+ LQ +  L 
Sbjct:   586 MVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQ 645

Query:   620 -NPXXXXXXXXXXXXXF-RDFPSSRR-YDVEFESSKRRELQSSDQSFAPSPSIWELLKLN 676
              NP             + R+   +R  +  E ES  R +   +D S     ++  L  + 
Sbjct:   646 RNPSLNRTLSRPHSIKYSRELSRTRSSFCSERESVTRPD--GADPSKKVKVTVGRLYSMI 703

Query:   677 AAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVV 736
               +W Y V G++ A +AG + PLFALG++  L ++YS  D + ++ + ++A++F   +V+
Sbjct:   704 RPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWD-ETQKEIKKIAILFCCASVI 762

Query:   737 TIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLV 796
             T+ VY ++H  +  MGE LT RVR +MF AIL NEIGWFD  +N + +L S L +DATL+
Sbjct:   763 TLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLL 822

Query:   797 RSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGD 856
             ++ + DR +I++QN+ L VT+F+IAFIL+WR            I   ++E+LF++G+GGD
Sbjct:   823 KTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGD 882

Query:   857 YNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVS 916
              N+AY +A  +A E+++NIRTVAA+  E++I   ++ EL +P+K +  RG I+G  YGVS
Sbjct:   883 LNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVS 942

Query:   917 QLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQAL 976
             Q     SY L LWY S L+ +  + F  +MK+FMV               PD++KG+Q +
Sbjct:   943 QFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMV 1002

Query:   977 GPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRS 1036
               VF IL RKT I  +   S+E+  ++G IEL+ V F YP RPD+ IF + +L V AG+S
Sbjct:  1003 ASVFEILDRKTQIVGE--TSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKS 1060

Query:  1037 LAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST 1096
             +A+VGQSGSGKS+VISL++RFYDP +G V+I+G DI+ L+L++LR+ IGLVQQEPALF+T
Sbjct:  1061 MALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFAT 1120

Query:  1097 TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156
             TIYENI YGNE AS+ E++++   ANAH FI+ +PEGY + VG+RGVQ+SGGQ+QR+AIA
Sbjct:  1121 TIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIA 1180

Query:  1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQ 1216
             RAILKNP+ILLLDEATSALD  SE ++Q+ALD+LM  RTT++VAHRLSTI+NAD I+VL 
Sbjct:  1181 RAILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVLH 1240

Query:  1217 QGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNP 1249
              GK+ E GSH +L+  ++G Y +LI LQQ + P
Sbjct:  1241 GGKIVEQGSHRKLVLNKSGPYFKLISLQQQQQP 1273

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0016020 "membrane" evidence=IDA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q8GU75 mdr11 "MDR-like ABC transporter" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 2950 (1043.5 bits), Expect = 1.8e-307, P = 1.8e-307
 Identities = 592/1234 (47%), Positives = 836/1234 (67%)

Query:    30 SKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHR 89
             +K +   FL LF+ AD+ D VLM +GSLGA  HGA++PVFFI FG++I+ +G     P  
Sbjct:    30 AKVEKVPFLKLFSFADRWDYVLMAVGSLGACAHGASVPVFFIFFGKLINIIGLAYLFPTT 89

Query:    90 LTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTE 149
             ++ R++++             S+W  VA WM TGERQ A++R  YL+S+L +D++ FDTE
Sbjct:    90 VSGRVAKYSLDFVYLGIVILFSSWTEVACWMHTGERQAAKMRQAYLRSMLDQDIAVFDTE 149

Query:   150 ARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLI 209
             A    +I  I+SD ++VQDAI +K G+ + Y+S+F  GFA+GF+ VWQ++L+TLA+VPLI
Sbjct:   150 ASTGEVINAITSDILVVQDAISEKVGNFMHYISRFLAGFAIGFSQVWQISLVTLAIVPLI 209

Query:   210 AVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEAL 269
             A+AGG Y      L  +   +Y +AG++AEE+I  VR V AFVGE KA+ +Y  +L    
Sbjct:   210 AIAGGIYAYVTIGLMARVRKSYVKAGEIAEEVIGNVRTVQAFVGEEKAVRTYREALLRTY 269

Query:   270 KQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFAL 329
             K GK+ G+AKG+G+G  + +LF +WALL+W+  ++V    +NGG++FTT++NV+ +G +L
Sbjct:   270 KYGKRGGLAKGLGLGSMHSVLFLSWALLIWFTSVVVHKNISNGGESFTTMLNVVIAGLSL 329

Query:   330 GQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSR 389
             GQ                         +  ++     G TLP + G I+F +V FAYPSR
Sbjct:   330 GQAAPNISTFLRARTAAYPIFQMIERNT-VNKASSKAGRTLPSVDGHIQFRDVRFAYPSR 388

Query:   390 PHMVFENLNFSVD--AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL 447
             P +V  +  FS+D  AGK  A VG SGSGKST++S+++R YEP +G +LLDGHD+K L +
Sbjct:   389 PDVVILD-RFSLDFPAGKIVALVGGSGSGKSTVVSLIERFYEPLTGAVLLDGHDIKDLDV 447

Query:   448 KWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507
             KWLR+Q+GLV+QEPALFATSI  NIL GK DASMD +  AAK + A +F+  LPD Y+TQ
Sbjct:   448 KWLRQQIGLVNQEPALFATSIRENILYGKGDASMDEINHAAKLSEAITFINHLPDRYETQ 507

Query:   508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTI 567
             VGE G QLSGGQKQRIAI+RA+L+NP ILLLDEATSALDAESE  VQ AL+++M  RTT+
Sbjct:   508 VGERGIQLSGGQKQRIAISRAILKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTV 567

Query:   568 VVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG-GEYAALVNLQSSEHLSNPXXXXX 626
             V+AHRLST+R+ DTI V+ +G++VE+GTH  L++     YA+L+ LQ +  L N      
Sbjct:   568 VIAHRLSTIRNADTIAVVDSGRIVETGTHEQLMANPRSAYASLIQLQEAAQLQNKQSFSD 627

Query:   627 XXXXXXXXFRDFPS--SRR-----YDVEFES-SKRRELQSSDQSFAPS-P-SIWELLKLN 676
                        +    SR      +  E +S S+   +++ D+    S P S+ +L  + 
Sbjct:   628 SASLSRPLSSKYSRELSRTSMGGSFRSEKDSVSRYGTVEAHDEGGHKSKPVSMKKLYSMI 687

Query:   677 AAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVV 736
               +W + V G+V A +AG + PLFALG+T  L ++Y   ++  KR V ++A++F   AV+
Sbjct:   688 RPDWFFGVSGTVSAFVAGSQMPLFALGVTQALVSYYMGWETT-KREVRKIAVLFCCGAVL 746

Query:   737 TIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLV 796
             T+  + ++H  + +MGE LT RVR  MF+AIL NEIGWFD   + + +L S L  DATLV
Sbjct:   747 TVVFHAIEHLSFGIMGERLTLRVRERMFAAILRNEIGWFDDTSHTSSMLSSRLETDATLV 806

Query:   797 RSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGD 856
             R+ + DR +I++QN+ + VT+ +IAFI++WR            +   ++E++F+KG+GG+
Sbjct:   807 RTIVVDRSTILLQNIGMIVTSLIIAFIINWRITLVVLATYPLMVSGHISEKMFMKGYGGN 866

Query:   857 YNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVS 916
               ++Y +A  +A EA++NIRTVAA+  E+++   +A EL +P KQ+  RG  +G  YGVS
Sbjct:   867 LGKSYLKANMLAAEAVSNIRTVAAFCAEEKVIKLYADELKEPAKQSFRRGQGAGLFYGVS 926

Query:   917 QLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQAL 976
             Q     SYAL LWY S L+ ++ ++F  +MKSFMV               PDI+KG+Q +
Sbjct:   927 QFFLFSSYALALWYGSELMSKEMASFKSVMKSFMVLIVTALAMGETLAMAPDIIKGNQMV 986

Query:   977 GPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRS 1036
               VF IL RKT +  D  A  +V  ++G IELR V F+YP RP++ +F+ L+L + AG+S
Sbjct:   987 SSVFEILDRKTDVLID--AGNDVKRVEGVIELRGVEFRYPARPEVVVFKGLDLLMKAGKS 1044

Query:  1037 LAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST 1096
             +A+VG SGSGKSTV+SL++RFYDPI+G VLIDG DIR + L+SLR+ IGLVQQEPALF+T
Sbjct:  1045 MALVGMSGSGKSTVLSLILRFYDPIAGKVLIDGKDIRKVKLKSLRKHIGLVQQEPALFAT 1104

Query:  1097 TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156
             TIY+NI YG + A+E E++ A K ANAH FIS +PEGY++ VG+RGVQLSGGQ+QR+AIA
Sbjct:  1105 TIYDNILYGKDGATEAEVVDAAKLANAHSFISALPEGYRTRVGERGVQLSGGQRQRIAIA 1164

Query:  1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQ 1216
             RAI+K+P+ILLLDEATSALD  SE ++Q+ALD++M  RTT+MVAHRLSTI+NAD I+VLQ
Sbjct:  1165 RAIVKDPAILLLDEATSALDVESERVVQQALDRVMRNRTTVMVAHRLSTIKNADVISVLQ 1224

Query:  1217 QGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPE 1250
              GK+ E G+H QL+   NG Y +L+ LQQ +  +
Sbjct:  1225 DGKIIEQGAHHQLIENRNGAYHKLVSLQQQQQQQ 1258

GO:0005886 "plasma membrane" evidence=IBA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 2927 (1035.4 bits), Expect = 5.0e-305, P = 5.0e-305
 Identities = 580/1235 (46%), Positives = 832/1235 (67%)

Query:    15 NDDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFG 74
             ++D  I  M       K+ S SFL LF+ AD  DCVLM LGS+GA IHGA++PVFFI FG
Sbjct:     4 SNDPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFG 63

Query:    75 RMIDSLGHLSSHPHRLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKY 134
             ++I+ +G     P   + +++++             S+W+ VA WM TGERQ A++R  Y
Sbjct:    64 KLINIIGLAYLFPQEASHKVAKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRKAY 123

Query:   135 LQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194
             L+S+L +D+S FDTE     +I  I+S+ ++VQDAI +K G+ + ++S+F  GFA+GF S
Sbjct:   124 LRSMLSQDISLFDTEISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGFAS 183

Query:   195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE 254
             VWQ++L+TL++VP IA+AGG Y    S L  +   +Y +A ++AEE+I  VR V AF GE
Sbjct:   184 VWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFTGE 243

Query:   255 AKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGK 314
              KA+ SY  +L+     G+K+G+AKG+G+G  + +LF +WALL+W+  I+V  G  NGG+
Sbjct:   244 EKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANGGE 303

Query:   315 AFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDD--GITLPK 372
             +FTT++NV+ +G +LGQ                             ER  +D  G  L  
Sbjct:   304 SFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMI-------ERNTEDKTGRKLGN 356

Query:   373 LAGQIEFSEVCFAYPSRPHMV-FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431
             + G I F +V F YPSRP +V F+ LNF + AGK  A VG SGSGKST+IS+++R YEPT
Sbjct:   357 VNGDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPT 416

Query:   432 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAA 491
              G ++LDG+D++ L LKWLR  +GLV+QEP LFAT+I  NI+ GK+DA+ + +  AAK +
Sbjct:   417 DGAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLS 476

Query:   492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
              A SF+  LP+G++TQVGE G QLSGGQKQRI+I+RA+++NP ILLLDEATSALDAESE 
Sbjct:   477 EAISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEK 536

Query:   552 IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALV 610
             IVQ AL+++M  RTT+VVAHRLSTVR+ D I V+  G+++ESG+H +LIS   G Y++L+
Sbjct:   537 IVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLL 596

Query:   611 NLQSSEHLSNPXXXXXXXXXXXXXFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIW 670
              +Q  E  S                 + P +     E  SS  + +   D +     ++ 
Sbjct:   597 RIQ--EAASPNLNHTPSLPVSTKPLPELPIT-----ETTSSIHQSVNQPDTTKQAKVTVG 649

Query:   671 ELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIF 730
              L  +   +W Y + G++G+ +AG + PLFALGI   L ++Y   ++  +  V +++++F
Sbjct:   650 RLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQALVSYYMDWETT-QNEVKRISILF 708

Query:   731 VGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLA 790
                +V+T+ V+ ++H  + +MGE LT RVR  MFSAIL NEIGWFD  +N + +L S L 
Sbjct:   709 CCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSMLASRLE 768

Query:   791 ADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFL 850
             +DATL+R+ + DR +I+++N+ L VTAF+I+FIL+WR            I   ++E++F+
Sbjct:   769 SDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLATYPLIISGHISEKIFM 828

Query:   851 KGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISG 910
             +G+GG+ ++AY +A  +A E+I+NIRTV A+  E+++   ++ EL +P++++  RG ++G
Sbjct:   829 QGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFRRGQMAG 888

Query:   911 FGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIV 970
               YGVSQ     SY L LWY S+L+++  S+F  +MK+FMV               PD++
Sbjct:   889 ILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLALAPDLL 948

Query:   971 KGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLK 1030
             KG+Q +  VF +L R+T +  D    +E++ ++G IEL+ V F YP RPD+TIF + NL 
Sbjct:   949 KGNQMVVSVFELLDRRTQVVGD--TGEELSNVEGTIELKGVHFSYPSRPDVTIFSDFNLL 1006

Query:  1031 VSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQE 1090
             V +G+S+A+VGQSGSGKS+V+SLV+RFYDP +G ++IDG DI+ L L+SLRR IGLVQQE
Sbjct:  1007 VPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQE 1066

Query:  1091 PALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150
             PALF+TTIYENI YG E ASE E+M+A K ANAH FIS +PEGY + VG+RG+Q+SGGQ+
Sbjct:  1067 PALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQR 1126

Query:  1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNAD 1210
             QR+AIARA+LKNP ILLLDEATSALD  SE ++Q+ALD+LM  RTT++VAHRLSTI+N+D
Sbjct:  1127 QRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTTVVVAHRLSTIKNSD 1186

Query:  1211 KIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1245
              I+V+Q GK+ E GSH  L+  +NG Y +LI LQQ
Sbjct:  1187 MISVIQDGKIIEQGSHNILVENKNGPYSKLISLQQ 1221

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1473 (523.6 bits), Expect = 4.0e-296, Sum P(2) = 4.0e-296
 Identities = 290/580 (50%), Positives = 393/580 (67%)

Query:    40 LFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHXX 99
             LF+ AD +D VLM LG+LGA +HG +LPVF   F  ++DS G  ++HP  +   + ++  
Sbjct:    98 LFSFADGLDYVLMTLGTLGALVHGCSLPVFLRFFADLVDSFGSHAAHPDTMLRLVVKYAF 157

Query:   100 XXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHI 159
                        S+W  ++ WM TGERQ+ R+R++YL + L +D+SFFDT+ R S++I  I
Sbjct:   158 YFLVVGAAIWASSWAEISCWMWTGERQSTRMRIRYLHAALHQDVSFFDTDVRTSDVIHAI 217

Query:   160 SSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTIT 219
             ++DA++VQDAI +K G+ + YL+ F  GF VGFT+ WQL L+TLAVVPLIAV GG     
Sbjct:   218 NADAVVVQDAISEKLGNLIHYLATFVSGFVVGFTAAWQLALVTLAVVPLIAVIGGLSAAA 277

Query:   220 MSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAK 279
             ++ LS + + A  +A  +AE+ ++Q+R V +FVGE + + +YS +L  A + G +SG AK
Sbjct:   278 LAKLSSRSQDALSDASGIAEQALAQIRIVQSFVGEERVMRAYSAALAVAQRIGYRSGFAK 337

Query:   280 GIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXX 339
             GIG+G TY  +FC +ALLLWY G LVR   TNGG A  T+ +V+  G ALGQ        
Sbjct:   338 GIGLGGTYFTVFCCYALLLWYGGHLVRRAHTNGGLAIATMFSVMIGGLALGQSAPSMAAF 397

Query:   340 XXXXXXXXXXXXXXXXXSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLN 398
                                S ER G  G+ L  + G++E  +V F+YPSRP + +   L+
Sbjct:   398 AKARVAAAKIFRMMEHKP-SMEREG--GVELEAVTGRVELRDVEFSYPSRPDVGILRGLS 454

Query:   399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVS 458
              SV AGKT A VG SGSGKST++S+++R YEP +G ILLDGHDL+ L L+WLR Q+GLVS
Sbjct:   455 LSVPAGKTIALVGSSGSGKSTVVSLIERFYEPNAGTILLDGHDLRDLNLRWLRRQIGLVS 514

Query:   459 QEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG 518
             QEPALFAT+I  N+LLG++ A+ + + EAA+ ANAHSF+  LPD Y TQVGE G QLSGG
Sbjct:   515 QEPALFATTIRENLLLGRDGATQEELEEAARVANAHSFIVKLPDAYNTQVGERGLQLSGG 574

Query:   519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD 578
             QKQRIAIARA+LRNP ILLLDEATSALD+ESE +VQ AL++ M  RTT+V+AHRLST+R 
Sbjct:   575 QKQRIAIARAMLRNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK 634

Query:   579 VDTIMVLKNGQVVESGTHVDLISKG-GEYAALVNLQSSEH 617
              D + VL+ G + E GTH +L+++G G YA L+ +Q   H
Sbjct:   635 ADLVAVLQGGAISEVGTHDELMARGDGTYARLIRMQEQAH 674

GO:0005886 "plasma membrane" evidence=IBA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

TAIR|locus:2088897 ABCB15 "ATP-binding cassette B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 2500 (885.1 bits), Expect = 8.9e-260, P = 8.9e-260
 Identities = 523/1225 (42%), Positives = 745/1225 (60%)

Query:    35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRI 94
             GS  S+F  AD +D +LM LG +GA   G T P+  ++  ++++++G  S +       I
Sbjct:    18 GSVRSIFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIGGSSFNTDTFMQSI 77

Query:    95 SEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARD-S 153
             S++               ++    W +TGERQTAR+R KYL++VL++D+ +FD      S
Sbjct:    78 SKNSVALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAVLRQDVGYFDLHVTSTS 137

Query:   154 NIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAG 213
             ++I  +SSD+ ++QD + +K  + L   S F   + VGF  +W+L ++ L  + L+ + G
Sbjct:   138 DVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAIVGLPFIVLLVIPG 197

Query:   214 GAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK 273
               Y   + ++S K    Y EAG VAE+ IS VR VYAF GE K I  +S +L+ ++K G 
Sbjct:   198 LMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISKFSTALQGSVKLGI 257

Query:   274 KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXX 333
             K G+AKGI +G + G+ F  W  + WY   +V +    GG  F     +   G +LG   
Sbjct:   258 KQGLAKGITIG-SNGITFAMWGFMSWYGSRMVMYHGAQGGTVFAVAAAIAIGGVSLGGGL 316

Query:   334 XXXXXXXXXXXXXXXXXXXXXXXSH-SSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM 392
                                        S+ P  DG  L K+ G++EF  V F YPSR   
Sbjct:   317 SNLKYFFEAASVGERIMEVINRVPKIDSDNP--DGHKLEKIRGEVEFKNVKFVYPSRLET 374

Query:   393 -VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451
              +F++    V +GKT A VG SGSGKST+IS++QR Y+P +G+IL+DG  +  LQ+KWLR
Sbjct:   375 SIFDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQVKWLR 434

Query:   452 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
              QMGLVSQEPALFAT+I  NIL GKEDASMD V+EAAKA+NAH+F+  LP+GY+TQVGE 
Sbjct:   435 SQMGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGER 494

Query:   512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571
             G Q+SGGQKQRIAIARA++++P ILLLDEATSALD+ESE +VQ ALE     RTTI++AH
Sbjct:   495 GVQMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAH 554

Query:   572 RLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQSSEHLSNPXXXXXXXXX 630
             RLST+R+ D I V+KNG +VE+G+H +L+    G+Y+ LV+LQ  E              
Sbjct:   555 RLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHLQQIE--KQDINVSVKIGP 612

Query:   631 XXXXFRDFPSSRRYDVEFESSKRRELQS-------SDQSFAPSPSIWELLKLNAAEWPYA 683
                  +D  +S R      SS    +         S+ +    PS   LL +N  EW  A
Sbjct:   613 ISDPSKDIRNSSRVSTLSRSSSANSVTGPSTIKNLSEDNKPQLPSFKRLLAMNLPEWKQA 672

Query:   684 VLGSVGAILAGMEAPLFALGITHILTAFY-SPHDSQIKRVVDQVALIFVGLAVVTIPVYL 742
             + G + A L G   P +A  +  +++ ++ + HD +IK      AL FVGLAV++  + +
Sbjct:   673 LYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHD-EIKEKTRIYALSFVGLAVLSFLINI 731

Query:   743 LQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALAD 802
              QHY +  MGE+LT R+R  M S +L+ E+GWFD DEN++G + S LA DA +VRS + D
Sbjct:   732 SQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICSRLAKDANVVRSLVGD 791

Query:   803 RLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYS 862
             R++++VQ V+    AF +  +++WR            I  F   ++ LK       +A  
Sbjct:   792 RMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRRVLLKSMSKKAIKAQD 851

Query:   863 RATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLC 922
              ++ +A EA++N+RT+ A+  ++RI          P ++++ +   +GFG  +SQ L+ C
Sbjct:   852 ESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRESIRQSWFAGFGLAMSQSLTSC 911

Query:   923 SYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGI 982
             ++AL  WY   LI+        + ++FM+                D+ KGS A+G VF +
Sbjct:   912 TWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMTTDLAKGSDAVGSVFAV 971

Query:   983 LYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQ 1042
             L R T+I P+DP   E   I G +E  +V F YP RPD+ IF+N ++K+  G+S A+VG 
Sbjct:   972 LDRYTSIDPEDPDGYETERITGQVEFLDVDFSYPTRPDVIIFKNFSIKIEEGKSTAIVGP 1031

Query:  1043 SGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENI 1102
             SGSGKST+I L+ RFYDP+ G V IDG DIR+ +LRSLRR I LV QEP LF+ TI ENI
Sbjct:  1032 SGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1091

Query:  1103 KYG--NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160
              YG  ++   E E+++A KAANAH FI+ + EGY ++ GDRGVQLSGGQKQR+AIARA+L
Sbjct:  1092 IYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDTYCGDRGVQLSGGQKQRIAIARAVL 1151

Query:  1161 KNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
             KNPS+LLLDEATSALD+ SE ++Q+AL+++M GRT++++AHRLSTI+N D IAVL +GK+
Sbjct:  1152 KNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRLSTIQNCDAIAVLDKGKL 1211

Query:  1221 AEIGSHEQLLRK-ENGIYKQLIRLQ 1244
              E G+H  LL K   GIY  L+ LQ
Sbjct:  1212 VERGTHSSLLSKGPTGIYFSLVSLQ 1236

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C7F2	AB14B_ARATH	No assigned EC number	0.7014	0.9672	0.9719	no	no
Q9C7F8	AB13B_ARATH	No assigned EC number	0.7134	0.9648	0.9710	yes	no
P06795	MDR1B_MOUSE	3, ., 6, ., 3, ., 4, 4	0.3845	0.9521	0.9349	yes	no
P21448	MDR1_CRIGR	3, ., 6, ., 3, ., 4, 4	0.3835	0.9561	0.9388	yes	no
P08183	MDR1_HUMAN	3, ., 6, ., 3, ., 4, 4	0.3948	0.9600	0.9398	yes	no
Q54BT3	ABCB2_DICDI	No assigned EC number	0.4057	0.9896	0.8876	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.6.3.44	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1253
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-138
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-132
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-129
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-127
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-127
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-123
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-114
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-112
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-111
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-110
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-108
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-106
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-105
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-102
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-101
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	1e-100
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	2e-99
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-98
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	8e-95
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-91
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	3e-90
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	3e-88
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	8e-87
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-85
COG5265	497	COG5265, ATM1, ABC-type transport system involved	5e-85
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	7e-85
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-83
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-82
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	4e-80
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	1e-79
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	5e-79
COG5265	497	COG5265, ATM1, ABC-type transport system involved	3e-76
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-74
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	1e-73
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	1e-71
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	5e-70
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	5e-69
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	9e-69
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-68
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	6e-68
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-67
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	3e-67
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	6e-66
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	4e-65
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	9e-65
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-64
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-64
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	8e-64
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	6e-63
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	1e-62
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	1e-62
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	8e-61
COG4987	573	COG4987, CydC, ABC-type transport system involved	8e-61
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	2e-60
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-59
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	5e-58
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	6e-58
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	7e-57
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-55
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	1e-55
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-55
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	3e-54
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	6e-54
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	4e-53
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	6e-53
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	2e-51
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	3e-49
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	3e-49
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-48
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	2e-48
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	4e-48
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	8e-48
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	2e-47
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-47
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	4e-47
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	8e-47
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-46
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	2e-46
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-46
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	9e-46
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-45
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-45
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	4e-45
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	6e-45
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-44
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-44
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-44
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	5e-44
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	6e-44
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	9e-44
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	1e-43
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	1e-43
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	3e-43
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	3e-43
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-42
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	5e-42
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	7e-42
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	9e-42
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	1e-41
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	2e-41
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	3e-41
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	5e-41
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	6e-41
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	7e-41
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	7e-41
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	8e-41
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-40
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-40
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-40
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-40
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-39
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	7e-39
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	8e-39
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	8e-39
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	9e-39
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	1e-38
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	1e-38
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-38
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	3e-38
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	3e-38
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	6e-38
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	7e-38
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	9e-38
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	1e-37
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	1e-37
pfam00664	274	pfam00664, ABC_membrane, ABC transporter transmemb	1e-37
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-37
pfam00664	274	pfam00664, ABC_membrane, ABC transporter transmemb	2e-37
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	2e-37
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	2e-37
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	3e-37
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	3e-37
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	3e-37
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-37
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	7e-37
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	8e-37
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	9e-37
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	1e-36
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-36
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-36
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	2e-36
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	2e-36
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	3e-36
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	3e-36
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-36
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	1e-35
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-35
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-35
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	3e-35
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-35
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	4e-35
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-35
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	4e-35
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	4e-35
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	8e-35
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	9e-35
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-34
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-34
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	2e-34
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	3e-34
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	3e-34
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	4e-34
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	7e-34
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	9e-34
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-33
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-33
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	1e-33
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	3e-33
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	3e-33
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	4e-33
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	4e-33
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	5e-33
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	5e-33
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	6e-33
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	8e-33
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-32
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-32
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	3e-32
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	4e-32
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	4e-32
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	6e-32
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	7e-32
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	8e-32
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-31
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-31
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-31
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-31
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	4e-31
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	5e-31
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	7e-31
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	7e-31
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	8e-31
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	9e-31
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	1e-30
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	1e-30
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-30
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	1e-30
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-30
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	2e-30
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-30
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	3e-30
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	3e-30
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	3e-30
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-30
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	4e-30
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	4e-30
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	6e-30
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	6e-30
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	8e-30
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	8e-30
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	1e-29
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	2e-29
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	2e-29
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-29
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	2e-29
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	2e-29
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	3e-29
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	3e-29
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	4e-29
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	5e-29
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	6e-29
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	6e-29
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	1e-28
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-28
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-28
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-28
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-28
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-28
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-28
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	3e-28
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	4e-28
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	4e-28
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	4e-28
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	4e-28
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	4e-28
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	6e-28
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	6e-28
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	6e-28
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	6e-28
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	7e-28
pfam00005	119	pfam00005, ABC_tran, ABC transporter	8e-28
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	9e-28
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	1e-27
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	1e-27
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	1e-27
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	1e-27
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	1e-27
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	1e-27
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	1e-27
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	2e-27
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	2e-27
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	2e-27
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	3e-27
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	3e-27
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	3e-27
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	4e-27
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	4e-27
pfam00005	119	pfam00005, ABC_tran, ABC transporter	6e-27
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	6e-27
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	6e-27
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	7e-27
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	7e-27
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	8e-27
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	8e-27
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	8e-27
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	9e-27
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	9e-27
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	1e-26
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	1e-26
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	1e-26
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	1e-26
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-26
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-26
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	2e-26
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	3e-26
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	3e-26
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	3e-26
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-26
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	4e-26
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	4e-26
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	5e-26
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	5e-26
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	5e-26
COG4598	256	COG4598, HisP, ABC-type histidine transport system	5e-26
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	6e-26
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	6e-26
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	7e-26
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	7e-26
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	7e-26
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	7e-26
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	8e-26
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	9e-26
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	1e-25
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	1e-25
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	1e-25
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	1e-25
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-25
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	1e-25
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	1e-25
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	1e-25
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	1e-25
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	1e-25
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	2e-25
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-25
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	2e-25
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-25
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	3e-25
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	3e-25
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	3e-25
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	3e-25
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	3e-25
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	3e-25
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	4e-25
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	4e-25
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	5e-25
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	5e-25
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	5e-25
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	5e-25
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	6e-25
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	7e-25
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	8e-25
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	1e-24
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-24
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	1e-24
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	1e-24
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-24
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	1e-24
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	1e-24
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-24
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	2e-24
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-24
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	2e-24
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	2e-24
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	2e-24
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	3e-24
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	3e-24
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	4e-24
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	4e-24
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	4e-24
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	5e-24
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	5e-24
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	6e-24
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	6e-24
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	6e-24
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	9e-24
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	9e-24
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	9e-24
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	9e-24
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	1e-23
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	1e-23
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	1e-23
COG4598	256	COG4598, HisP, ABC-type histidine transport system	1e-23
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	1e-23
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	1e-23
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-23
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	1e-23
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	1e-23
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-23
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	2e-23
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	2e-23
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-23
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	3e-23
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-23
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	3e-23
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	3e-23
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	3e-23
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	3e-23
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	4e-23
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	5e-23
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	5e-23
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	5e-23
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	5e-23
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	6e-23
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	7e-23
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	7e-23
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	7e-23
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	7e-23
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	7e-23
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	9e-23
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	9e-23
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	9e-23
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	9e-23
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	9e-23
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-22
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-22
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	2e-22
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	2e-22
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	2e-22
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	3e-22
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	3e-22
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	3e-22
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	4e-22
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	5e-22
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	5e-22
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	5e-22
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	5e-22
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	5e-22
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	6e-22
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	8e-22
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	8e-22
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	8e-22
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	8e-22
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	9e-22
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	9e-22
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	1e-21
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	1e-21
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	1e-21
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	1e-21
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	1e-21
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-21
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	1e-21
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	1e-21
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	2e-21
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	2e-21
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	2e-21
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	2e-21
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	2e-21
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	2e-21
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	3e-21
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	3e-21
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	3e-21
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	3e-21
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	3e-21
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	4e-21
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	4e-21
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	4e-21
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	4e-21
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	4e-21
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	4e-21
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	5e-21
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	5e-21
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	6e-21
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	6e-21
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	7e-21
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	8e-21
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	9e-21
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	9e-21
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-20
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	1e-20
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-20
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	1e-20
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	1e-20
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-20
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	2e-20
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-20
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-20
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	3e-20
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	3e-20
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	3e-20
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-20
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	3e-20
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	3e-20
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	4e-20
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	5e-20
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	5e-20
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	5e-20
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	6e-20
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	6e-20
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	8e-20
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	8e-20
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	9e-20
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	1e-19
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-19
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-19
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	1e-19
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	1e-19
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-19
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	1e-19
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-19
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	2e-19
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	2e-19
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-19
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	2e-19
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	3e-19
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	3e-19
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	3e-19
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	3e-19
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	3e-19
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	4e-19
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	4e-19
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	4e-19
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	4e-19
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	5e-19
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	6e-19
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	7e-19
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	7e-19
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	9e-19
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	1e-18
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	1e-18
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	1e-18
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	1e-18
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	1e-18
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	2e-18
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-18
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	2e-18
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	2e-18
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	2e-18
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	3e-18
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	3e-18
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	3e-18
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	3e-18
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	3e-18
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	4e-18
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	4e-18
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	4e-18
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	4e-18
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	4e-18
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	4e-18
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	4e-18
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	5e-18
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	5e-18
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	5e-18
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	6e-18
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	6e-18
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	6e-18
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	6e-18
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	8e-18
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	8e-18
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-17
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	1e-17
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	1e-17
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	1e-17
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-17
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	1e-17
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-17
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	2e-17
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-17
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	2e-17
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	2e-17
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	2e-17
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	2e-17
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	3e-17
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	3e-17
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	4e-17
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	4e-17
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	4e-17
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	6e-17
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	8e-17
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	9e-17
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-16
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-16
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	2e-16
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-16
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	3e-16
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	3e-16
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	3e-16
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	3e-16
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	4e-16
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	5e-16
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	5e-16
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	6e-16
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	7e-16
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	8e-16
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	8e-16
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	8e-16
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	9e-16
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-15
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	1e-15
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-15
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	2e-15
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-15
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	2e-15
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	2e-15
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	4e-15
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	8e-15
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	8e-15
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	1e-14
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	1e-14
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	1e-14
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	1e-14
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	1e-14
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	1e-14
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-14
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	2e-14
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	2e-14
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	2e-14
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-14
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	3e-14
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	3e-14
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	3e-14
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	3e-14
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	3e-14
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	3e-14
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	3e-14
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	4e-14
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	4e-14
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	4e-14
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	5e-14
COG4133	209	COG4133, CcmA, ABC-type transport system involved	5e-14
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	5e-14
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	7e-14
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	1e-13
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	1e-13
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	1e-13
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	2e-13
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	2e-13
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-13
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	2e-13
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	2e-13
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	2e-13
COG4133	209	COG4133, CcmA, ABC-type transport system involved	3e-13
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	5e-13
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	7e-13
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	7e-13
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	7e-13
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	8e-13
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	9e-13
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	1e-12
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	1e-12
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	2e-12
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-12
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	2e-12
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	2e-12
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-12
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	2e-12
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	3e-12
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	3e-12
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	3e-12
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	4e-12
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	4e-12
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	4e-12
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	4e-12
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	4e-12
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	4e-12
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	5e-12
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	5e-12
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	5e-12
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	7e-12
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	7e-12
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	8e-12
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	8e-12
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	9e-12
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	1e-11
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-11
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	1e-11
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-11
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	3e-11
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	4e-11
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	4e-11
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	4e-11
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	5e-11
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	5e-11
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	8e-11
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-10
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	1e-10
smart00382	148	smart00382, AAA, ATPases associated with a variety	3e-10
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	4e-10
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	4e-10
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	4e-10
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	7e-10
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	9e-10
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	1e-09
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	1e-09
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-09
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-09
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	3e-09
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	3e-09
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	3e-09
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	5e-09
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	5e-09
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	5e-09
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	6e-09
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	9e-09
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	1e-08
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	1e-08
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	2e-08
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	2e-08
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-08
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	3e-08
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	3e-08
smart00382	148	smart00382, AAA, ATPases associated with a variety	3e-08
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	4e-08
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	5e-08
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	6e-08
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	6e-08
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	6e-08
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	7e-08
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	8e-08
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	8e-08
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	9e-08
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	9e-08
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	1e-07
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	2e-07
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	3e-07
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	3e-07
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	3e-07
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	1e-06
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	2e-06
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	2e-06
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	2e-06
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	2e-06
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-06
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	4e-06
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	4e-06
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	4e-06
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	5e-06
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	7e-06
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	8e-06
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	9e-06
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	9e-06
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	1e-05
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	1e-05
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	1e-05
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	1e-05
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	1e-05
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	1e-05
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-05
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-05
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	2e-05
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	2e-05
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-05
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	4e-05
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	4e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	5e-05
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	5e-05
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	5e-05
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	6e-05
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	7e-05
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	1e-04
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	2e-04
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-04
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	3e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	3e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	5e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	8e-04
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	8e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	9e-04
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	0.001
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	0.001
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	0.001
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	0.001
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	0.001
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	0.001
cd03270	226	cd03270, ABC_UvrA_I, ATP-binding cassette domain I	0.001
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	0.002
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	0.002
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	0.002
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	0.002
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	0.003
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	0.003
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	0.003
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	0.004
cd03278	197	cd03278, ABC_SMC_barmotin, ATP-binding cassette do	0.004

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  420 bits (1081), Expect = e-138
 Identities = 151/238 (63%), Positives = 184/238 (77%), Gaps = 1/238 (0%)

Query: 377 IEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           IEF  V F YPSRP   + + L+ ++  GKT A VG SG GKST++S+++R Y+PTSG+I
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 495
           LLDG D++ L L+WLR Q+GLVSQEP LF  +IA NI  GK DA+ + V EAAK AN H 
Sbjct: 61  LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
           F+  LPDGY T VGE G+QLSGGQKQRIAIARA+LRNPKILLLDEATSALDAESE +VQ 
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180

Query: 556 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
           AL++ M  RTTIV+AHRLST+R+ D I VL+NGQVVE GTH +L+++ G YA LV  Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  404 bits (1042), Expect = e-132
 Identities = 148/239 (61%), Positives = 190/239 (79%), Gaps = 1/239 (0%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE +NVSF+YP RPD+ I + L+L +  G+++A+VG SG GKSTV+SL+ RFYDP SG +
Sbjct: 1    IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
            L+DG DIR LNLR LR +IGLV QEP LF  TI ENI+YG  DA++ E+ +A K AN H 
Sbjct: 61   LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120

Query: 1126 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
            FI  +P+GY + VG+RG QLSGGQKQR+AIARA+L+NP ILLLDEATSALD  SE L+QE
Sbjct: 121  FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180

Query: 1186 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            ALD+ M+GRTTI++AHRLSTIRNAD IAVLQ G+V E G+H++L+  + G+Y +L++ Q
Sbjct: 181  ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM-AQKGVYAKLVKAQ 238

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  409 bits (1054), Expect = e-129
 Identities = 203/582 (34%), Positives = 318/582 (54%), Gaps = 16/582 (2%)

Query: 667  PSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQV 726
             S+   L          +   +  + A +   L  L I  I+ A  +     ++     +
Sbjct: 1    LSLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLL-IGRIIDALLADLGELLE-----L 54

Query: 727  ALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLI 786
             L+ + LA++   +  LQ Y  + +G+ + A +R  +F  +L   + +FD  +  +G LI
Sbjct: 55   LLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLI 112

Query: 787  STLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAE 846
            S L  D   V + ++  L ++  ++ L + + V+ F LSWRLA ++   LPLL       
Sbjct: 113  SRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172

Query: 847  QLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRG 906
                +        A     +   E+++ IR + A+G E R   +F     +  +  L   
Sbjct: 173  ARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS 232

Query: 907  HISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLA-L 965
             +      +  LLS     L L     L+       G +  +F++ ++  L     L  +
Sbjct: 233  RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALA-AFILYLLRLLTPILQLGEV 291

Query: 966  APDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFE 1025
               + + S A   +F +L  +  ++      K+     G+IE  NVSF YP      + +
Sbjct: 292  VSLLQRASAAAERLFELLDEEPEVEDPPDPLKDT---IGSIEFENVSFSYP--GKKPVLK 346

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085
            +++  +  G  +A+VG SGSGKST+I L++R YDP SG +LIDG DIR ++L SLR++IG
Sbjct: 347  DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406

Query: 1086 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQL 1145
            +V Q+P LFS TI ENI  G  DA++ E+ +A K ANAH FI+ +P+GY + VG+RGV L
Sbjct: 407  IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466

Query: 1146 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLST 1205
            SGGQ+QR+AIARA+L+NP IL+LDEATSALDT +E LIQ+AL KL++GRTT+++AHRLST
Sbjct: 467  SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST 526

Query: 1206 IRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1247
            I+NAD+I VL  G++ E G+HE+LL K  G+Y +L + Q   
Sbjct: 527  IKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQGGA 567

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  404 bits (1039), Expect = e-127
 Identities = 197/566 (34%), Positives = 311/566 (54%), Gaps = 13/566 (2%)

Query: 51  LMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALV 110
           L+ L  L   +      +  +L GR+ID+L             + E  L L+ L L+  V
Sbjct: 15  LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-------LGELLELLLLLLLLALLGGV 67

Query: 111 SAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAI 170
              +      + G++  A LR    + +L+  +SFFD  A+  ++I  +++D   V + +
Sbjct: 68  LRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLV 126

Query: 171 GDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAA 230
                     +        + F+  W+L L+ L ++PL+A+           LS +   A
Sbjct: 127 STVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREA 186

Query: 231 YGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLL 290
            GE      E +S +R + AF  E + ++ +  + +E  +   ++   + +   L   L 
Sbjct: 187 LGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246

Query: 291 FCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANII 350
                L+L   G LV  G    G     I+ ++     + Q    ++ + +  AAA  + 
Sbjct: 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLF 306

Query: 351 SIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFV 410
            ++ E     + P      L    G IEF  V F+YP +   V ++++FS++ G+  A V
Sbjct: 307 ELLDEEPEVEDPPD----PLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIV 361

Query: 411 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 470
           GPSGSGKST+I ++ RLY+PTSG+IL+DG D++ + L  LR+++G+VSQ+P LF+ +I  
Sbjct: 362 GPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRE 421

Query: 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530
           NI LG+ DA+ + + EA K ANAH F+  LPDGY T VGE G  LSGGQ+QR+AIARA+L
Sbjct: 422 NIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481

Query: 531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590
           RNP IL+LDEATSALD E+E ++Q AL+K++  RTT+++AHRLST+++ D I+VL NG++
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRI 541

Query: 591 VESGTHVDLISKGGEYAALVNLQSSE 616
           VE GTH +L++KGG YA L   Q   
Sbjct: 542 VERGTHEELLAKGGLYARLYQAQGGA 567

Length = 567

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score =  403 bits (1037), Expect = e-127
 Identities = 203/547 (37%), Positives = 293/547 (53%), Gaps = 18/547 (3%)

Query: 73  FGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVA----FWMQTGERQTA 128
              MID  G        L         Y  +L +VALV A +G A         GER  A
Sbjct: 41  VRLMIDH-GFSKDSSGLLNR-------YFAFLLVVALVLA-LGTAARFYLVTWLGERVVA 91

Query: 129 RLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGF 188
            +R      ++    SFFD   R   ++  +++D  L+Q  IG     ALR       G 
Sbjct: 92  DIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGL 150

Query: 189 AVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAV 248
            + F +  +LT L L  VPL+ +    +   +  LS + +    +AG  A E +  +R V
Sbjct: 151 IMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTV 210

Query: 249 YAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHG 308
            AF  E      +  ++++A +  ++    + +   +   L+F A   +LW     V  G
Sbjct: 211 QAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAG 270

Query: 309 DTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGI 368
             + G     +   +    ++G  +     + +   AA  +I +++              
Sbjct: 271 KMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPK 328

Query: 369 TLP-KLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426
           TLP  L G+IEF +V FAYP+RP     + LN +V  G+T A VGPSG+GKST+  ++ R
Sbjct: 329 TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR 388

Query: 427 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIE 486
            Y+P SG+ILLDG DL+ L    LR +M LV Q+P LFA S+  NI  G+ DA+ + V  
Sbjct: 389 FYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEA 448

Query: 487 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
           AA+AA+AH F+  LP+GY T +GE G  LSGGQ+QRIAIARA+L++  ILLLDEATSALD
Sbjct: 449 AARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD 508

Query: 547 AESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEY 606
           AESE +VQ+ALE +M  RTT+++AHRL+TV   D I+V+  G++V  GTH +LI+KGG Y
Sbjct: 509 AESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLY 568

Query: 607 AALVNLQ 613
           A L  LQ
Sbjct: 569 ARLARLQ 575

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score =  391 bits (1007), Expect = e-123
 Identities = 201/589 (34%), Positives = 321/589 (54%), Gaps = 41/589 (6%)

Query: 677  AAEWPYAVLGSVGAILAGMEAPLFALGITHILT-------------AFYSPHDSQIKRVV 723
            AA WP+     V      + A L AL IT   T              F       + R  
Sbjct: 7    AALWPF-----VRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYF 61

Query: 724  DQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTG 783
              + ++ + LA+ T      + Y  T +GE + A +R ++F+ ++S    +FD  +N +G
Sbjct: 62   AFLLVVALVLALGT----AARFYLVTWLGERVVADIRRAVFAHLISLSPSFFD--KNRSG 115

Query: 784  LLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAF 843
             ++S L  D TL++S +   LS+ ++N  + +   ++ FI S +L ++V  ++PL++   
Sbjct: 116  EVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPI 175

Query: 844  VAEQLFLKGFGGDYNRAYSR--------ATSVAREAIANIRTVAAYGIEKRISIQFASEL 895
            +          G   R  SR        A S A E +  IRTV A+G E     +F   +
Sbjct: 176  L--------LFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAV 227

Query: 896  SQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIIT 955
             +  + A  R         +  +L   +    LW  +  +     + G + +     ++ 
Sbjct: 228  EKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMV 287

Query: 956  ALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKY 1015
            A ++     +  ++ + + A   +  +L  +  I+           ++G IE   V+F Y
Sbjct: 288  AGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAY 347

Query: 1016 PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL 1075
            P RPD    + LNL V  G ++A+VG SG+GKST+  L++RFYDP SG +L+DG D+R L
Sbjct: 348  PARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407

Query: 1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
            +   LR ++ LV Q+P LF+ ++ ENI+YG  DA++ E+  A +AA+AH FIS +PEGY 
Sbjct: 408  DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYD 467

Query: 1136 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1195
            +++G+RGV LSGGQ+QR+AIARAILK+  ILLLDEATSALD  SE L+Q+AL+ LM+GRT
Sbjct: 468  TYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRT 527

Query: 1196 TIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            T+++AHRL+T+  AD+I V+ QG++   G+H +L+ K  G+Y +L RLQ
Sbjct: 528  TLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  356 bits (916), Expect = e-114
 Identities = 130/235 (55%), Positives = 181/235 (77%), Gaps = 2/235 (0%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E +NV+F+YP      +  +++L + AG ++A+VG SGSGKST+++L+ RFYD  SG +
Sbjct: 1    VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
            LIDG+D+R   L SLRR+IGLV Q+  LF+ T+ ENI YG   A+  E+ +A +AANAH 
Sbjct: 60   LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119

Query: 1126 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
            FI  +PEGY + +G+RGV+LSGGQ+QR+AIARA+LK+P IL+LDEATSALDT SE L+Q 
Sbjct: 120  FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179

Query: 1186 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240
            AL++LM+ RTT ++AHRLSTI NAD+I VL+ GK+ E G+HE+LL +  G+Y +L
Sbjct: 180  ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score =  367 bits (943), Expect = e-112
 Identities = 200/606 (33%), Positives = 317/606 (52%), Gaps = 42/606 (6%)

Query: 651  SKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVG---AILAGMEAPLFALGITHI 707
            +  +E +      A    ++ LL L+  +WP+ +   V    + L  M  P +   +   
Sbjct: 133  ASEKEAEQGQSETADL--LFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDT 190

Query: 708  LTAFYSPHDSQIKRVVDQVALIFVGL--AVVTIPVYLLQHYFYTLMGEHLTARVRLSMFS 765
            L     P            A+ F+ L     ++   L    F   M   +  R+R  +F 
Sbjct: 191  LGGDKGPPALAS-------AIFFMCLLSIASSVSAGLRGGSFNYTMA-RINLRIREDLFR 242

Query: 766  AILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILS 825
            ++L  ++G+FD  EN TG L S L++D   +  +L+  ++++++N+ + +        LS
Sbjct: 243  SLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLS 300

Query: 826  WRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYS--------RATSVAREAIANIRT 877
             RL  V   +LPL+   F+AE++F     G   +  S        +A  VA EA++ +RT
Sbjct: 301  PRLTMVTLINLPLV---FLAEKVF-----GKRYQLLSEELQEAVAKANQVAEEALSGMRT 352

Query: 878  VAAYGIEKRISIQFASELSQPNKQALLRGHISGFGY-GVSQLLSLCSYALGLWYASVLIK 936
            V ++  E+  + +F   L +   Q   R  ++  GY   + +L +    L L+Y   L+ 
Sbjct: 353  VRSFAAEEGEASRFKEALEE-TLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVL 411

Query: 937  QKGSNFGDIMKSFMVLII-TALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPA 995
                + G+++ SF++       AV     +   +++   A   VF  L RK  I      
Sbjct: 412  TGKVSSGNLV-SFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL--TG 468

Query: 996  SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 1055
            +     ++G IE ++VSF YP RPD+ + + L   +  G  +A+VG SGSGKSTV +L+ 
Sbjct: 469  TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ 528

Query: 1056 RFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 1115
              Y P  G VL+DG  +   +   L R++ LV QEP LFS ++ ENI YG  D  + E+M
Sbjct: 529  NLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM 588

Query: 1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
             A KAANAH FI   P GY + VG++G QLSGGQKQR+AIARA+++ P +L+LDEATSAL
Sbjct: 589  AAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648

Query: 1176 DTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1235
            D   E L+QE   +    RT +++AHRLST+  AD+I VL++G V E+G+H+Q L ++ G
Sbjct: 649  DAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ-LMEDQG 705

Query: 1236 IYKQLI 1241
             YK L+
Sbjct: 706  CYKHLV 711

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score =  365 bits (938), Expect = e-111
 Identities = 196/545 (35%), Positives = 296/545 (54%), Gaps = 26/545 (4%)

Query: 74  GRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLK 133
           GR+ID+LG     P  L S I     ++  L + + VSA +    +  T  R   R+R  
Sbjct: 185 GRVIDTLGG-DKGPPALASAI----FFMCLLSIASSVSAGLRGGSFNYTMARINLRIRED 239

Query: 134 YLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT 193
             +S+L++D+ FFD E +   +   +SSD   +  ++       LR L            
Sbjct: 240 LFRSLLRQDLGFFD-ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW 298

Query: 194 SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVG 253
              +LT++TL  +PL+ +A   +      LSE+ + A  +A +VAEE +S +R V +F  
Sbjct: 299 LSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAA 358

Query: 254 EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALL---LWYAGILVRHGDT 310
           E      +  +L+E L+  K+  +A     G  +        +    L+Y G LV  G  
Sbjct: 359 EEGEASRFKEALEETLQLNKRKALAY---AGYLWTTSVLGMLIQVLVLYYGGQLVLTGKV 415

Query: 311 NGGKAFTTIINVIFSGFALGQAAPNLAAI----AKGKAAAANIISIIKENSHSSERPGDD 366
           + G     +++ +     LG+A   L+ +     +   A+  +   + +   +    G  
Sbjct: 416 SSG----NLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYL-DRKPNIPLTG-- 468

Query: 367 GITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ 425
            +    L G IEF +V F+YP+RP + V + L F++  G+  A VGPSGSGKST+ +++Q
Sbjct: 469 TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ 528

Query: 426 RLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVI 485
            LY+PT G++LLDG  L      +L  Q+ LV QEP LF+ S+  NI  G  D   + ++
Sbjct: 529 NLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM 588

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
            AAKAANAH F+   P+GY T+VGE G+QLSGGQKQRIAIARA++R P++L+LDEATSAL
Sbjct: 589 AAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648

Query: 546 DAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE 605
           DAE E ++Q +  +  ++RT +++AHRLSTV   D I+VLK G VVE GTH  L+   G 
Sbjct: 649 DAECEQLLQESRSR--ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706

Query: 606 YAALV 610
           Y  LV
Sbjct: 707 YKHLV 711

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  343 bits (883), Expect = e-110
 Identities = 127/233 (54%), Positives = 175/233 (75%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +EF  V F YP     V  +++  + AG+T A VGPSGSGKST+++++ R Y+  SG+IL
Sbjct: 1   VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DGHD++   L  LR Q+GLVSQ+  LF  ++A NI  G+  A+ + V EAA+AANAH F
Sbjct: 61  IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           +  LP+GY T +GE G +LSGGQ+QRIAIARA+L++P IL+LDEATSALD ESE +VQ A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180

Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 609
           LE++M NRTT V+AHRLST+ + D I+VL++G++VE GTH +L+++GG YA L
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  339 bits (872), Expect = e-108
 Identities = 133/239 (55%), Positives = 178/239 (74%), Gaps = 3/239 (1%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE  NV+F Y   P   + ++++  + AG+ +A+VG SGSGKST++ L+ RFYD  SG++
Sbjct: 1    IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
            LIDG DIR + L SLRR IG+V Q+  LF+ TI  NI+YG  DA++ E+++A KAA  H 
Sbjct: 59   LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118

Query: 1126 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
             I R P+GY + VG+RG++LSGG+KQRVAIARAILKNP ILLLDEATSALDT +E  IQ 
Sbjct: 119  KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178

Query: 1186 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            AL  + +GRTTI++AHRLSTI NADKI VL+ G++ E G+HE+LL K  G+Y ++ + Q
Sbjct: 179  ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKAQ 236

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  351 bits (904), Expect = e-106
 Identities = 182/525 (34%), Positives = 271/525 (51%), Gaps = 26/525 (4%)

Query: 98  ALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIF 157
            L  ++  L+ L+  ++         +R    L  ++ + +L+  +S+F  E R    I 
Sbjct: 201 LLAALFEALLRLLRTYLIAHLG----KRLDLELSGRFFRHLLRLPLSYF--EKRSVGEII 254

Query: 158 HISSDAILVQDAIGDKTGHALRYLSQ---FFVGFAVGFTSVWQLTLLTLAVVPLIAVAGG 214
               +   +++ +   TG  L  +       +  AV F   W+LTL+ LA +PL  +   
Sbjct: 255 SRVRELEQIREFL---TGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITL 311

Query: 215 AYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK 274
            +   +   + K      E      E I  +  V A   E +    + + L + +  G K
Sbjct: 312 IFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFK 371

Query: 275 SGVAKGIGVGLTYGLLF-CAWALLLWYAGILVRHGDTNGGK--AFTTI---INVIFSGFA 328
           +     I   +   LL   +  L+LW+  ILV  G+   G+  AF  +        +  +
Sbjct: 372 TEKLALILNTIK-SLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLS 430

Query: 329 LGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPS 388
                   A +A  +    +I+    E            I LPKL G+IEF  V F Y  
Sbjct: 431 QLWTDFQQAKVALERLG--DILDTPPEQEG-----DKTLIHLPKLQGEIEFENVSFRYGP 483

Query: 389 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK 448
               V E+L+  +  G+  A VG SGSGKST++ ++  LY+P  G+ILLDG DL  + L 
Sbjct: 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLA 543

Query: 449 WLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV 508
            LR Q+G V Q+P LF+ SI  NI LG  +A+ + +IEAA+ A AH F+E LP GY T V
Sbjct: 544 SLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603

Query: 509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIV 568
           GEGG  LSGGQ+QR+A+ARA+L  PKILLLDEATSALD E+E I+ + L +I+  RT I+
Sbjct: 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVII 663

Query: 569 VAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
           +AHRLST+R  D I+VL  G++VE G+H +L+++GG YA L   Q
Sbjct: 664 IAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708

Length = 709

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  344 bits (884), Expect = e-105
 Identities = 189/574 (32%), Positives = 311/574 (54%), Gaps = 20/574 (3%)

Query: 680  WPYA-------VLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVG 732
            W Y        VL  V  IL        A  +  +L   +   D     V+  V L+ +G
Sbjct: 6    WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRS---VLWWVPLVVIG 62

Query: 733  LAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAAD 792
            LAV+      +  Y  + +   +   +R+ MF  +L   + +FD     TG L+S +  D
Sbjct: 63   LAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFD 120

Query: 793  ATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKG 852
            +  V SA  D   ++V+     +  F++    SW+L  +V   LP+L          L+ 
Sbjct: 121  SEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRR 180

Query: 853  FGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFG 912
               +   +  + T+VA E +   R V  +G +   + +F +  ++  + A+         
Sbjct: 181  ISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240

Query: 913  YGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLA-LAPDIVK 971
              ++QL++  + A+ L+ A    +      GD   +F+  +I  +   ++L  +   + +
Sbjct: 241  SPITQLIASLALAVVLFIALFQAQAGSLTAGDFT-AFITAMIALIRPLKSLTNVNAPMQR 299

Query: 972  GSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKV 1031
            G  A   +F +L   +  + D   ++ +   +G++E RNV+F+YP R D    ++++L +
Sbjct: 300  GLAAAESLFTLL--DSPPEKDT-GTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVI 355

Query: 1032 SAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP 1091
              G ++A+VG+SGSGKST+++L+ RFY+P SG +L+DG+D+    L SLRR++ LV Q+ 
Sbjct: 356  EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDV 415

Query: 1092 ALFSTTIYENIKYGN-EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150
             LF+ TI  NI YG  E A   E+ +A  AA A  F+ ++P G  + +G+ GV LSGGQ+
Sbjct: 416  VLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475

Query: 1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNAD 1210
            QR+AIARA+LK+  IL+LDEATSALD  SE L+Q AL++LM+GRTT+++AHRLSTI  AD
Sbjct: 476  QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKAD 535

Query: 1211 KIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            +I V+  G++ E G+H +LL   NG+Y QL  +Q
Sbjct: 536  RIVVMDDGRIVERGTHNELL-ARNGLYAQLHNMQ 568

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  337 bits (865), Expect = e-102
 Identities = 181/543 (33%), Positives = 282/543 (51%), Gaps = 43/543 (7%)

Query: 96  EHALYLVYLGLVALVSAWIGVA-----FWMQTGERQTAR-LRLKYLQSVLKKDMSFFDTE 149
              L+ V L ++ L     G+      + +     +  R +R++  + +L   +SFFD +
Sbjct: 50  RSVLWWVPLVVIGLA-VLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ 108

Query: 150 AR---------DSNIIFHISSDAI--LVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQL 198
                      DS  +   ++DA   LV++ +                 F V     WQL
Sbjct: 109 PTGTLLSRITFDSEQVASAATDAFIVLVRETL------------TVIGLFIVLLYYSWQL 156

Query: 199 TLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAI 258
           TL+ + ++P++++     +  +  +S++ + + G+   VAEE +   R V  F G+A   
Sbjct: 157 TLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYET 216

Query: 259 ESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTT 318
             +        +   K   A  I   +T  +   A A++L+ A    + G    G     
Sbjct: 217 RRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAG----D 272

Query: 319 IINVIFSGFALGQAAPNLAAIA----KGKAAAANIISIIKENSHSSERPGDDGITLPKLA 374
               I +  AL +   +L  +     +G AAA ++ +++     S          + +  
Sbjct: 273 FTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLD----SPPEKDTGTRAIERAR 328

Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           G +EF  V F YP R     ++++  ++ G+T A VG SGSGKST+++++ R YEP SG+
Sbjct: 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388

Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDASMDRVIEAAKAANA 493
           ILLDGHDL    L  LR Q+ LVSQ+  LF  +IANNI  G+ E A    +  A  AA A
Sbjct: 389 ILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYA 448

Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
             FV+ LP G  T +GE G  LSGGQ+QR+AIARA+L++  IL+LDEATSALD ESE +V
Sbjct: 449 QDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV 508

Query: 554 QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
           Q ALE++M  RTT+V+AHRLST+   D I+V+ +G++VE GTH +L+++ G YA L N+Q
Sbjct: 509 QAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568

Query: 614 SSE 616
             E
Sbjct: 569 FRE 571

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  320 bits (822), Expect = e-101
 Identities = 128/238 (53%), Positives = 170/238 (71%), Gaps = 3/238 (1%)

Query: 377 IEFSEVCFAY-PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           IEF  V FAY P RP  V ++++F++ AGK  A VGPSGSGKSTI+ ++ R Y+ +SG I
Sbjct: 1   IEFENVTFAYDPGRP--VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 495
           L+DG D++ + L  LR  +G+V Q+  LF  +I  NI  G+ DA+ + VIEAAKAA  H 
Sbjct: 59  LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
            +   PDGY T VGE G +LSGG+KQR+AIARA+L+NP ILLLDEATSALD  +E  +Q 
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178

Query: 556 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
           AL  +   RTTIV+AHRLST+ + D I+VLK+G++VE GTH +L++KGG YA +   Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score =  317 bits (814), Expect = e-100
 Identities = 114/230 (49%), Positives = 172/230 (74%), Gaps = 1/230 (0%)

Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           G+IEF  V F+Y  +   V +++NFS+  G+T A VGP+G+GK+T+I+++ R Y+P  G+
Sbjct: 1   GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59

Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 494
           IL+DG D++ +  K LR  +G+V Q+  LF+ +I  NI LG+ +A+ + VIEAAK A AH
Sbjct: 60  ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
            F+  LP+GY T +GE G  LS G++Q +AIARA+LR+PKIL+LDEATS +D E+E ++Q
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179

Query: 555 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG 604
            ALEK+M  RT+I++AHRLST+++ D I+VL +G+++E GTH +L++K G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  332 bits (853), Expect = 2e-99
 Identities = 181/571 (31%), Positives = 293/571 (51%), Gaps = 50/571 (8%)

Query: 700  FALGITHILTAFYSPHDSQIKRVVDQV------------ALIFVGLAVVTIPVYLLQHYF 747
              L +  + T  +S    QI  V+D+V            A+  +  A+    + LL+ Y 
Sbjct: 164  LLLQLLALATPLFS----QI--VIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYL 217

Query: 748  YTLMGEHLTARVRLSMFSAILSNEIGWFDLDEN-NTGLLISTLAADATLVRSALADRLSI 806
               +G+ L   +    F  +L   + +F   E  + G +IS    +   +R  L   +  
Sbjct: 218  IAHLGKRLDLELSGRFFRHLLRLPLSYF---EKRSVGEIIS-RVRELEQIREFLTGSILT 273

Query: 807  IVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNR----AYS 862
            ++ ++   +    + F+ SW+L  +V A++PL +   +  Q  L+       R      +
Sbjct: 274  LIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLR----RKTRKLIEESA 329

Query: 863  RATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLC 922
               S   E I  I TV A   E R   Q+ + L++          ++     +  LL   
Sbjct: 330  EQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL 389

Query: 923  SYALGLWYASVLIKQKGSNFGDIMKSFMVLIIT--------ALAVAETLALAPDIVKGSQ 974
            S  L LW+ ++L+       G++    +V               +++            +
Sbjct: 390  SSVLILWFGAILV-----LEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALE 444

Query: 975  ALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAG 1034
             LG    IL      + D        +++G IE  NVSF+Y       + E+L+L++  G
Sbjct: 445  RLGD---ILDTPPEQEGDKTLIHLP-KLQGEIEFENVSFRYGPDDPPVL-EDLSLEIPPG 499

Query: 1035 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 1094
              +A+VG+SGSGKST++ L++  Y P  G +L+DG D+  ++L SLRR++G V Q+P LF
Sbjct: 500  EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF 559

Query: 1095 STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154
            S +I ENI  GN +A++ E+++A + A AH FI  +P GY + VG+ G  LSGGQ+QR+A
Sbjct: 560  SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLA 619

Query: 1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAV 1214
            +ARA+L  P ILLLDEATSALD  +E +I + L ++++GRT I++AHRLSTIR+AD+I V
Sbjct: 620  LARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIV 679

Query: 1215 LQQGKVAEIGSHEQLLRKENGIYKQLIRLQQ 1245
            L QGK+ E GSHE+LL  + G+Y +L + Q+
Sbjct: 680  LDQGKIVEQGSHEELLA-QGGLYARLYQQQE 709

Length = 709

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score =  312 bits (802), Expect = 2e-98
 Identities = 119/229 (51%), Positives = 171/229 (74%), Gaps = 2/229 (0%)

Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            G IE  NV+F Y       + +++N  +  G ++A+VG +G+GK+T+I+L+MRFYDP  G
Sbjct: 1    GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             +LIDG DIR ++ +SLR  IG+V Q+  LFS TI ENI+ G  +A++ E+++A K A A
Sbjct: 59   QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118

Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
            H FI ++P GY + +G+ G  LS G++Q +AIARA+L++P IL+LDEATS +DT +E LI
Sbjct: 119  HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178

Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
            QEAL+KLM+GRT+I++AHRLSTI+NADKI VL  GK+ E G+H++LL K
Sbjct: 179  QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  333 bits (856), Expect = 8e-95
 Identities = 255/928 (27%), Positives = 424/928 (45%), Gaps = 176/928 (18%)

Query: 484  VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
            V++ +K    H FV  LPD Y+T VG   ++LSGGQKQRI+IARA++RNPKIL+LDEATS
Sbjct: 549  VVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608

Query: 544  ALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQ------------ 589
            +LD +SE +VQ+ +  +    NR TI++AHRLST+R  +TI VL N +            
Sbjct: 609  SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGE 668

Query: 590  -----------------------------------VVESGTHVDLI-SKGGEYAALVNLQ 613
                                               ++E GTH  L+ +K G Y  ++N Q
Sbjct: 669  DPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728

Query: 614  --SSEHLSNP--------SSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQS- 662
              SS+  SN          S  Y  S R     +   + +++ E  S+K+    S + + 
Sbjct: 729  KVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENAS 788

Query: 663  --------------FAPSPSIWELLKLNAAE-WPY---AVLGSVGAILAGMEAPLFALGI 704
                          F   P     L++   E + Y     + ++  ++AG   P+FAL  
Sbjct: 789  ENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLY 848

Query: 705  THILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMF 764
               ++  +    + ++   ++ +L  + +A+       L++Y+  ++GE +   ++  +F
Sbjct: 849  AKYVSTLFD--FANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLF 906

Query: 765  SAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFIL 824
              IL  EI +FD D++  GLL + +  D  L+++ L + + I    + L + + V++F  
Sbjct: 907  ENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966

Query: 825  SWRLAAVVAASLPLLIGAFVAEQLFLKG----------------FGGDYNRAYSRATSVA 868
               +AAV+  +  + +  F                         +  D +  +   + + 
Sbjct: 967  CPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSD-DEIFKDPSFLI 1025

Query: 869  REAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGL 928
            +EA  N+ TV  YG+E          +   NK    +  ++   +G SQ   L   +   
Sbjct: 1026 QEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAY 1085

Query: 929  WYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTA 988
            W+ S LI++      D MKS    + T     + ++L  D      +    + ++ RK+ 
Sbjct: 1086 WFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSN 1145

Query: 989  I-------------------------------QPDDPA---------SKEVTEIKGNI-- 1006
            I                               +P+ P          SK+ T I G    
Sbjct: 1146 IDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGS 1205

Query: 1007 -------------ELRN---VSFKYPVRPDITIF------ENLNLKVSAGRSLAVVGQSG 1044
                         +L+N   + FK     D+T        E  N+ +      ++  + G
Sbjct: 1206 GKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGG 1265

Query: 1045 SGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKY 1104
            SG+ + +     F +  SG +L+DG DI   NL+ LR    +V QEP LF+ +IYENIK+
Sbjct: 1266 SGEDSTV-----FKN--SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKF 1318

Query: 1105 GNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 1164
            G EDA+  ++ +A K A    FI  +P  Y ++VG  G  LSGGQKQR+AIARA+L+ P 
Sbjct: 1319 GKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPK 1378

Query: 1165 ILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGK--- 1219
            ILLLDEATS+LD+ SE LI++ +  + +   +T I +AHR+++I+ +DKI V        
Sbjct: 1379 ILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTG 1438

Query: 1220 --VAEIGSHEQLLRKENGIYKQLIRLQQ 1245
              V   G+HE+LL  ++G+YK+ ++L +
Sbjct: 1439 SFVQAHGTHEELLSVQDGVYKKYVKLAK 1466

Length = 1466

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score =  306 bits (787), Expect = 1e-91
 Identities = 163/437 (37%), Positives = 245/437 (56%), Gaps = 19/437 (4%)

Query: 188 FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRA 247
           F + F   WQL+L+ + + P++++A    +     +S+  +   G+    AE+++   + 
Sbjct: 157 FIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKE 216

Query: 248 VYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGI-LVR 306
           V  F G+    + +        +QG K   A  I   +   +   A A +L+ A    V 
Sbjct: 217 VLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM 276

Query: 307 HGDTNGGKAFTTIINVIFSG-FALGQAAPNL----AAIAKGKAAAANIISIIKENSHSSE 361
              T G       I V+FS   AL +   +L    A   +G AA   + +I+       E
Sbjct: 277 DTLTAG------TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL-----DLE 325

Query: 362 RPGDDG-ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTI 420
           +  D+G   + +  G IEF  V F YP +      N+NF + AGKT A VG SGSGKSTI
Sbjct: 326 QEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385

Query: 421 ISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA- 479
            +++ R Y+   G+ILLDGHDL+   L  LR Q+ LVSQ   LF  +IANNI   + +  
Sbjct: 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQY 445

Query: 480 SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 539
           S +++ EAA+ A A  F+  + +G  T +GE G  LSGGQ+QRIAIARA+LR+  IL+LD
Sbjct: 446 SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD 505

Query: 540 EATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
           EATSALD ESE  +Q AL+++  NRT++V+AHRLST+   D I+V+++G++VE GTH +L
Sbjct: 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565

Query: 600 ISKGGEYAALVNLQSSE 616
           +++ G YA L  +Q  +
Sbjct: 566 LAQNGVYAQLHKMQFGQ 582

Length = 582

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score =  303 bits (778), Expect = 3e-90
 Identities = 121/256 (47%), Positives = 182/256 (71%), Gaps = 3/256 (1%)

Query: 358 HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGK 417
              + P    I L ++ G +EF +V F+Y +    V  +++F    G+T A VGP+G+GK
Sbjct: 318 DVRDPP--GAIDLGRVKGAVEFDDVSFSYDNSRQGVE-DVSFEAKPGQTVAIVGPTGAGK 374

Query: 418 STIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE 477
           ST+I+++QR+++P SG+IL+DG D++++    LR  + +V Q+  LF  SI +NI +G+ 
Sbjct: 375 STLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP 434

Query: 478 DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 537
           DA+ + +  AA+ A AH F+E  PDGY T VGE G QLSGG++QR+AIARA+L++P IL+
Sbjct: 435 DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI 494

Query: 538 LDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHV 597
           LDEATSALD E+E  V+ AL+++M  RTT ++AHRLSTVR+ D I+V  NG+VVESG+  
Sbjct: 495 LDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554

Query: 598 DLISKGGEYAALVNLQ 613
           +L+++GG +AAL+  Q
Sbjct: 555 ELVARGGRFAALLRAQ 570

Length = 588

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score =  298 bits (764), Expect = 3e-88
 Identities = 182/554 (32%), Positives = 286/554 (51%), Gaps = 57/554 (10%)

Query: 721  RVVDQVA---------LIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSM----FSAI 767
            R++D ++           + G  +  I   +L         + L  R RL++    F  I
Sbjct: 44   RIIDAISGKGDIFPLLAAWAGFGLFNIIAGVL----VARHADRLAHRRRLAVLTEYFERI 99

Query: 768  LSNEIGWFDLDENNTGLLISTL--AADA--TLVRSALADRLSIIVQNVALTVTAFVIAFI 823
            +   + W    +  +G  + TL    DA   L    + + L+ +V  V L   A  +   
Sbjct: 100  IQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFM--- 154

Query: 824  LSWRLAAV--VAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAY 881
             +WRL+ V  V   +  LI   V  +   K         Y    +   +AI N+  V +Y
Sbjct: 155  -NWRLSLVLVVLGIVYTLITTLVMRKT--KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSY 211

Query: 882  ---GIEKRISIQFASEL--SQ-P--NKQALLRGHISGFGYGVSQLLSLCSYALGLWYASV 933
                 E +     A  L  +Q P  +  AL     S      S +  L    LG      
Sbjct: 212  NRIEAETQALRDIADNLLAAQMPVLSWWALA----SVLNRAASTITMLAILVLGAA---- 263

Query: 934  LIKQKGSNFGDIMK--SFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQP 991
            L+++     G+++    F  L+I  L   + +A    +   +  L   F +      ++ 
Sbjct: 264  LVQKGQLRVGEVVAFVGFATLLIGRLD--QVVAFINQVFMAAPKLEEFFEVEDAVPDVR- 320

Query: 992  DDPASKEVTEIKGNIELRNVSFKYP-VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 1050
            D P + ++  +KG +E  +VSF Y   R  +   E+++ +   G+++A+VG +G+GKST+
Sbjct: 321  DPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV---EDVSFEAKPGQTVAIVGPTGAGKSTL 377

Query: 1051 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 1110
            I+L+ R +DP SG +LIDG DIRT+   SLRR I +V Q+  LF+ +I +NI+ G  DA+
Sbjct: 378  INLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDAT 437

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
            + E+  A + A AH FI R P+GY + VG+RG QLSGG++QR+AIARA+LK+P IL+LDE
Sbjct: 438  DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE 497

Query: 1171 ATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1230
            ATSALD  +E  ++ ALD+LM+GRTT ++AHRLST+RNAD+I V   G+V E GS ++L+
Sbjct: 498  ATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557

Query: 1231 RKENGIYKQLIRLQ 1244
             +  G +  L+R Q
Sbjct: 558  AR-GGRFAALLRAQ 570

Length = 588

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score =  297 bits (761), Expect = 8e-87
 Identities = 149/344 (43%), Positives = 194/344 (56%), Gaps = 12/344 (3%)

Query: 274 KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA 333
             G   G  + L   L F   A+LLW+   LV  G  + G+       V F+  A     
Sbjct: 359 NLGNIAGQAIELIQKLTF---AILLWFGAHLVIGGALSPGQL------VAFNMLAGRVTQ 409

Query: 334 P--NLAAIAKGKAAAANIISIIKENSHSSERPGDDG-ITLPKLAGQIEFSEVCFAYPSRP 390
           P   LA + +        +  + +  +S   P   G   LP+L G I F  + F Y    
Sbjct: 410 PVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDS 469

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450
             V  NLN  +  G+    VGPSGSGKST+  ++QRLY P  G++L+DG DL      WL
Sbjct: 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529

Query: 451 REQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 510
           R QMG+V QE  LF+ SI +NI L    A  + VI AAK A AH F+  LP GY T+VGE
Sbjct: 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGE 589

Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA 570
            G  LSGGQ+QRIAIARA++ NP+IL+ DEATSALD ESE ++ R + +I   RT I++A
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIA 649

Query: 571 HRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
           HRLSTVR  D I+VL+ GQ+ ESG H +L++  G YA L   QS
Sbjct: 650 HRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQS 693

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score =  277 bits (710), Expect = 2e-85
 Identities = 119/237 (50%), Positives = 161/237 (67%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  V F Y     ++ +N++  +  G+    VG SGSGKST+  ++QR Y P +G++L
Sbjct: 1   ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DGHDL      WLR Q+G+V QE  LF  SI +NI L     SM+RVIEAAK A AH F
Sbjct: 61  VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           +  LP+GY T VGE G  LSGGQ+QRIAIARA++ NP+IL+ DEATSALD ESE  + R 
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180

Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
           +  I + RT I++AHRLSTV++ D I+V++ G++VE G+H +L+++ G YA L  LQ
Sbjct: 181 MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score =  286 bits (733), Expect = 5e-85
 Identities = 167/472 (35%), Positives = 252/472 (53%), Gaps = 56/472 (11%)

Query: 794  TLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGF 853
            T++R  L    +I+   V +++ A ++  +  W  A     ++ L +   V    +   F
Sbjct: 54   TILRWIL---FNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDF 110

Query: 854  GGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGY 913
                N A S A + A +++ N  TV  +G E+  ++++   L    K A+ + H+S    
Sbjct: 111  RRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI-KVHVS---- 165

Query: 914  GVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAE------TLALAP 967
                LL L        +++ L                ++ ++AL V E       L    
Sbjct: 166  ----LLVLNFGQ-TAIFSTGLRV--------------MMTMSALGVEEGQLTVGDLVNVN 206

Query: 968  DIVKGSQALGPVFGILYR-----KTAIQ------------PDDPASKEVTE-IKGNIELR 1009
             ++          G  YR      T ++             D P +  +     G +   
Sbjct: 207  ALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFI 266

Query: 1010 NVSFKY-PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 1068
            NVSF Y P RP   I   ++  +  G+++A+VG+SG+GKST++ L+ RFYD  SG++ ID
Sbjct: 267  NVSFAYDPRRP---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITID 323

Query: 1069 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 1128
            G DIR +  +SLRR IG+V Q+  LF+ TI  NIKYG  DA+  E+  A +AA  H FI 
Sbjct: 324  GQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ 383

Query: 1129 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1188
             +PEGY + VG+RG++LSGG+KQRVAIAR ILKNP IL+LDEATSALDT +E  IQ AL 
Sbjct: 384  SLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR 443

Query: 1189 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240
            ++  GRTT+++AHRLSTI +AD+I VL  G++ E G+HE+LL    G+Y ++
Sbjct: 444  EVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA-GGLYAEM 494

Length = 497

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score =  288 bits (739), Expect = 7e-85
 Identities = 169/499 (33%), Positives = 283/499 (56%), Gaps = 32/499 (6%)

Query: 759  VRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAF 818
            +R  +F  ++   + +FD  + +TG L+S +  D+  V S+ +  L  +V+  A  +  F
Sbjct: 100  MRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLF 157

Query: 819  VIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGF---GGDYNRAYSRATSVAREAIANI 875
            ++ F  SW+L+ ++    P++    +A ++  K F     +      + T+ A + +   
Sbjct: 158  IMMFYYSWQLSLILIVIAPIV---SIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGH 214

Query: 876  RTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLI 935
            + V  +G ++  + +F    ++  +Q +     S     + QL++  S AL    A VL 
Sbjct: 215  KEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIA--SLAL----AFVLY 268

Query: 936  KQKGSNFGDIMK-----SFMVLIITALAVAETL----ALAPDIVKGSQALGPVFGILYRK 986
                ++F  +M      +  V+  + +A+   L     +     +G  A   +F IL  +
Sbjct: 269  ---AASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLE 325

Query: 987  TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 1046
               Q  D   + +   KG+IE RNV+F YP + ++    N+N K+ AG+++A+VG+SGSG
Sbjct: 326  ---QEKDEGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSG 381

Query: 1047 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 1106
            KST+ +L+ RFYD   G +L+DG+D+R   L SLR ++ LV Q   LF+ TI  NI Y  
Sbjct: 382  KSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYAR 441

Query: 1107 EDA-SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165
             +  S  ++ +A + A A  FI++M  G  + +G+ GV LSGGQ+QR+AIARA+L++  I
Sbjct: 442  TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501

Query: 1166 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1225
            L+LDEATSALDT SE  IQ ALD+L + RT++++AHRLSTI  AD+I V++ G++ E G+
Sbjct: 502  LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561

Query: 1226 HEQLLRKENGIYKQLIRLQ 1244
            H +LL + NG+Y QL ++Q
Sbjct: 562  HAELLAQ-NGVYAQLHKMQ 579

Length = 582

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score =  271 bits (694), Expect = 2e-83
 Identities = 113/219 (51%), Positives = 159/219 (72%), Gaps = 1/219 (0%)

Query: 373 LAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431
           L G ++F  V FAYP+RP  +V ++++F++  G+  A VGPSGSGKST++++++  Y+P 
Sbjct: 8   LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67

Query: 432 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAA 491
            G++LLDG  +   + K+L  ++ LV QEP LFA S+ +NI  G +  S + V EAA+ A
Sbjct: 68  GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127

Query: 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
           +AHSF+  L  GY T+VGE G+QLSGGQKQR+AIARA++RNP++L+LDEATSALDAESE 
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187

Query: 552 IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590
            VQ+AL      RT +V+AHRLSTV   D I+VL  G++
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score =  268 bits (688), Expect = 2e-82
 Identities = 113/240 (47%), Positives = 168/240 (70%), Gaps = 4/240 (1%)

Query: 1006 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I   +V F+Y  +PD   I +N++L++  G  + +VG+SGSGKST+  L+ RFY P +G 
Sbjct: 1    ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 1124
            VL+DG+D+   +   LRR++G+V QE  LF+ +I +NI   +   S   +++A K A AH
Sbjct: 59   VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
             FIS +PEGY + VG++G  LSGGQ+QR+AIARA++ NP IL+ DEATSALD  SE+ I 
Sbjct: 119  DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178

Query: 1185 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
              +  +  GRT I++AHRLST++NAD+I V+++G++ E GSH++LL + NG+Y  L +LQ
Sbjct: 179  RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQLQ 237

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  259 bits (665), Expect = 4e-80
 Identities = 101/214 (47%), Positives = 133/214 (62%), Gaps = 43/214 (20%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE +NVSF YP RP   + ++++L +  G  +A+VG SGSGKST++ L++R YDP SG +
Sbjct: 1    IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
            LIDG D+R L+L SLR+ I  V Q+P LFS TI ENI                       
Sbjct: 60   LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96

Query: 1126 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
                               LSGGQ+QR+AIARA+L++P IL+LDEATSALD  +E LI E
Sbjct: 97   -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137

Query: 1186 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGK 1219
            AL  L +G+T I++AHRLSTIR+AD+I VL  G+
Sbjct: 138  ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score =  276 bits (708), Expect = 1e-79
 Identities = 171/528 (32%), Positives = 274/528 (51%), Gaps = 21/528 (3%)

Query: 726  VALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSM----FSAILSNEIGWFDLDENN 781
            +AL  + +A+    +  L+ Y +     HLT+R+ + +    +  +L   +G+F+     
Sbjct: 181  LALAMLAVAIFEPALGGLRTYLFA----HLTSRIDVELGARLYRHLLGLPLGYFE--SRR 234

Query: 782  TGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLP--LL 839
             G  ++ +      +R+ L      +V ++   V    + F  S  L  VV  SL    L
Sbjct: 235  VGDTVARVRELEQ-IRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYAL 293

Query: 840  IGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPN 899
            +  FV   L  K     + R+ + ATS   E++  I T+ A   E +   ++  +L+   
Sbjct: 294  LSVFVGPIL-RKRVEDKFERS-AAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYV 351

Query: 900  KQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAV 959
              +    ++        +L+   ++A+ LW+ + L+     + G ++   M+       V
Sbjct: 352  AASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPV 411

Query: 960  AETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRP 1019
                 L  D  +   AL  +  IL   T  +    A+  + E++G I   N+ F+Y   P
Sbjct: 412  LRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAA--LPELRGAITFENIRFRY--AP 467

Query: 1020 DI-TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 1078
            D   +  NLNL +  G  + +VG SGSGKST+  L+ R Y P  G VL+DG D+   +  
Sbjct: 468  DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527

Query: 1079 SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHV 1138
             LRR++G+V QE  LFS +I +NI   N  A    ++ A K A AH FIS +P+GY + V
Sbjct: 528  WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587

Query: 1139 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIM 1198
            G++G  LSGGQ+QR+AIARA++ NP IL+ DEATSALD  SE LI   + ++  GRT I+
Sbjct: 588  GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVII 647

Query: 1199 VAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1246
            +AHRLST+R  D+I VL++G++AE G HE+LL  + G+Y +L + Q  
Sbjct: 648  IAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQQSG 694

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  256 bits (658), Expect = 5e-79
 Identities = 94/213 (44%), Positives = 130/213 (61%), Gaps = 42/213 (19%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IEF  V F+YP RP  V ++++ ++  G+  A VGPSGSGKST++ ++ RLY+PTSG+IL
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DG DL+ L L+ LR+ +  V Q+P LF+ +I  NI                        
Sbjct: 61  IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
                             LSGGQ+QRIAIARA+LR+P IL+LDEATSALD E+E ++  A
Sbjct: 97  ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138

Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589
           L  +   +T IV+AHRLST+RD D I+VL +G+
Sbjct: 139 LRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score =  261 bits (668), Expect = 3e-76
 Identities = 120/250 (48%), Positives = 168/250 (67%), Gaps = 7/250 (2%)

Query: 365 DDGITLPKL----AGQIEFSEVCFAY-PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKST 419
            D    P L     G + F  V FAY P RP  +   ++F++  GKT A VG SG+GKST
Sbjct: 247 SDAPDAPPLWPVRLGAVAFINVSFAYDPRRP--ILNGISFTIPLGKTVAIVGESGAGKST 304

Query: 420 IISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA 479
           I+ ++ R Y+  SG I +DG D++ +  + LR  +G+V Q+  LF  +IA NI  G+ DA
Sbjct: 305 ILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDA 364

Query: 480 SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 539
           + + V  AA+AA  H F++ LP+GY T VGE G +LSGG+KQR+AIAR +L+NP IL+LD
Sbjct: 365 TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD 424

Query: 540 EATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
           EATSALD  +E  +Q AL ++ + RTT+V+AHRLST+ D D I+VL NG++VE GTH +L
Sbjct: 425 EATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484

Query: 600 ISKGGEYAAL 609
           ++ GG YA +
Sbjct: 485 LAAGGLYAEM 494

Length = 497

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score =  246 bits (629), Expect = 2e-74
 Identities = 105/221 (47%), Positives = 150/221 (67%)

Query: 1000 TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 1059
              +KG ++ +NV+F YP RPD  + ++++  +  G   A+VG SGSGKSTV++L+  FY 
Sbjct: 6    DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65

Query: 1060 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 1119
            P  G VL+DG  I     + L  K+ LV QEP LF+ ++ +NI YG +  S   + +A +
Sbjct: 66   PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
             A+AH FIS +  GY + VG++G QLSGGQKQRVAIARA+++NP +L+LDEATSALD  S
Sbjct: 126  KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185

Query: 1180 ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
            E  +Q+AL    E RT +++AHRLST+  AD+I VL  G++
Sbjct: 186  EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score =  256 bits (656), Expect = 1e-73
 Identities = 116/258 (44%), Positives = 176/258 (68%), Gaps = 2/258 (0%)

Query: 353 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP 412
           ++++    E P D    LP + G +EF  + F + +    VF +++F   AG+T A VGP
Sbjct: 312 LEDSVFQREEPADAP-ELPNVKGAVEFRHITFEFANSSQGVF-DVSFEAKAGQTVAIVGP 369

Query: 413 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472
           +G+GK+T+I+++QR+Y+PT G+IL+DG D+ ++  + LR+ +  V Q+  LF  SI  NI
Sbjct: 370 TGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429

Query: 473 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532
            LG+E A+ + V EAAKAA AH F+    +GY T VGE G +LSGG++QR+AIARA+L+N
Sbjct: 430 RLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489

Query: 533 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 592
             IL+LDEATSALD E+E  V+ A++ +  NRTT ++AHRLSTVR+ D ++ L  G+++E
Sbjct: 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIE 549

Query: 593 SGTHVDLISKGGEYAALV 610
            G+  +LI K G +  L+
Sbjct: 550 KGSFQELIQKDGRFYKLL 567

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score =  238 bits (609), Expect = 1e-71
 Identities = 94/217 (43%), Positives = 140/217 (64%), Gaps = 1/217 (0%)

Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            G IE RNVSF YP +    + +N++L + AG  +A++G+ GSGKST++ L+   Y P SG
Sbjct: 1    GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
            +VL+DG DIR L+   LRR IG V Q+  LF  T+ +NI  G   A +  +++A + A  
Sbjct: 60   SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119

Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
              F+++ P G    +G+RG  LSGGQ+Q VA+ARA+L +P ILLLDE TSA+D  SE  +
Sbjct: 120  TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179

Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
            +E L +L+  +T I++ HR S +   D+I V+  G++
Sbjct: 180  KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score =  246 bits (629), Expect = 5e-70
 Identities = 186/588 (31%), Positives = 296/588 (50%), Gaps = 53/588 (9%)

Query: 675  LNAAEWPYAVLGSVGAILAGM---EAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFV 731
            LN  +    ++      LA +   E  LF      I+ A  S  D      V     ++ 
Sbjct: 14   LNVHKNRVLLIVIANITLAAITIAEPILFG----RIIDAISSKSD------VLPTLALWA 63

Query: 732  GLAVVTIPVYLLQHYFYTLMGEHLTARVRLSM----FSAILSNEIGWFDLDENNTGLLIS 787
            G  V     Y+L         + L    R ++    F  I+S  + W       +  L +
Sbjct: 64   GFGVFNTIAYVL----VAREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTSNALHT 118

Query: 788  TLAADATLVRSALADRLSIIVQNVALTVTAFVI---AFILSWRLAAV--VAASLPLLIGA 842
             L A  TL        L  + Q++A  V  F++   AF + WRL+ V  V   L +LI  
Sbjct: 119  LLRATETL----FGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAK 174

Query: 843  FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQA 902
             V ++   K         Y        ++I+N+  V +Y    RI  +  S L Q     
Sbjct: 175  LVMQRT--KNGQAAVEHHYHNVFKHVSDSISNVSVVHSY---NRIEAE-TSALKQ-FTNN 227

Query: 903  LLRGHIS-----GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK--SFMVLIIT 955
            LL              G++++ S  S    L   +VL+ +   + G+++    F  L+I 
Sbjct: 228  LLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIG 287

Query: 956  ALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPA-SKEVTEIKGNIELRNVSFK 1014
             L   +       I +    L   F +    +  Q ++PA + E+  +KG +E R+++F+
Sbjct: 288  RLD--QMSGFITQIFEARAKLEDFFDL--EDSVFQREEPADAPELPNVKGAVEFRHITFE 343

Query: 1015 YPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT 1074
            +          +++ +  AG+++A+VG +G+GK+T+I+L+ R YDP  G +LIDG DI T
Sbjct: 344  FANSSQGV--FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401

Query: 1075 LNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY 1134
            +   SLR+ I  V Q+  LF+ +I ENI+ G E A++ E+ +A KAA AH FI +   GY
Sbjct: 402  VTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGY 461

Query: 1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR 1194
             + VG+RG +LSGG++QR+AIARAILKN  IL+LDEATSALD  +E  ++ A+D L + R
Sbjct: 462  DTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNR 521

Query: 1195 TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1242
            TT ++AHRLST+RNAD +  L QG++ E GS ++L++K +G + +L+R
Sbjct: 522  TTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLR 568

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score =  246 bits (630), Expect = 5e-69
 Identities = 139/452 (30%), Positives = 227/452 (50%), Gaps = 58/452 (12%)

Query: 814  TVTAFV----------IAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSR 863
            T+TA +          +  I+   L  V   ++PL++   +  Q  L     +  R  ++
Sbjct: 263  TLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQ 322

Query: 864  ATSVAREAIANIRTVAAYGIEKRI------SIQFASELSQPNKQALLRGHISGFGYGVSQ 917
              +V  E+++ + T+ A   E R       ++   +      K   L    + F   + Q
Sbjct: 323  RNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGL--KSRFLSNLATNFAQFIQQ 380

Query: 918  LLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLI-ITALAVAETLALAPDIVKGSQAL 976
            L+S+    +G++  S          G++  +   LI    L+     ALAP        L
Sbjct: 381  LVSVAIVVVGVYLISD---------GEL--TMGGLIACVMLS---GRALAP--------L 418

Query: 977  GPVFGILYR----KTAIQ------------PDDPASKEVTEIKGNIELRNVSFKYPVRPD 1020
            G + G+L R    KTA+Q            P+         ++G IE RNVSF YP +  
Sbjct: 419  GQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQET 478

Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 1080
              + +N++L +  G  +A++G+ GSGKST++ L++  Y P  G+VL+DG DIR ++   L
Sbjct: 479  PAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537

Query: 1081 RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD 1140
            RR IG V Q+P LF  T+ +NI  G   A + E+++A + A    F+ R P+G    +G+
Sbjct: 538  RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGE 597

Query: 1141 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVA 1200
            RG  LSGGQ+Q VA+ARA+L++P ILLLDE TSA+D  SE   ++ L + + G+T ++V 
Sbjct: 598  RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVT 657

Query: 1201 HRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
            HR S +   D+I V+  G++   G  +Q+L  
Sbjct: 658  HRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score =  245 bits (628), Expect = 9e-69
 Identities = 107/251 (42%), Positives = 152/251 (60%), Gaps = 4/251 (1%)

Query: 361 ERPGDDGITLPKLAGQIEFSEVCFAY-PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKST 419
           E P       P+L+G +E   + F Y P  P ++ EN + ++  G+  A VG SGSGKST
Sbjct: 462 EAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLI-ENFSLTLQPGQRVALVGGSGSGKST 520

Query: 420 IISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA 479
           I  +V  LY+P SG+IL DG   + +  + L   + +V Q+  LF  ++ +N+ L     
Sbjct: 521 IAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTI 580

Query: 480 SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 539
               ++ A K A  H  +   P GY  ++ EGG  LSGGQ+QR+ IARA++RNP IL+LD
Sbjct: 581 PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD 640

Query: 540 EATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
           EATSALD E+E I+   L +     T I+VAHRLST+RD D I+VL+ G+VV+ GTH +L
Sbjct: 641 EATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL 698

Query: 600 ISKGGEYAALV 610
            + GG YA L+
Sbjct: 699 WAVGGAYARLI 709

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  240 bits (615), Expect = 2e-68
 Identities = 114/276 (41%), Positives = 162/276 (58%), Gaps = 7/276 (2%)

Query: 340 AKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFS--EVCFAYPSRPHMVFENL 397
           A G+AAA  + ++++        PG            IE S   + F YP        +L
Sbjct: 285 AAGEAAADKLFTLLE---SPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDL 340

Query: 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457
           N ++ AG+  A VG SG+GKST+++++     PT G+I ++G DL+ L  +  R+Q+  V
Sbjct: 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400

Query: 458 SQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 517
           SQ P LFA +I  NILL + DAS + +I A   A    FV   PDG  T +GEGG  LSG
Sbjct: 401 SQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSG 459

Query: 518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR 577
           GQ QR+A+ARA+L    +LLLDE T+ LDAE+E I+ +AL+++   +T +V+ HRL    
Sbjct: 460 GQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA 519

Query: 578 DVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
           D D I+VL NG++VE GTH +L  K G YA L+  Q
Sbjct: 520 DADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQ 555

Length = 559

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score =  243 bits (622), Expect = 6e-68
 Identities = 141/462 (30%), Positives = 223/462 (48%), Gaps = 37/462 (8%)

Query: 800  LADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNR 859
            L+ +L+    +  + V   ++  +    L  +  A   + + A                +
Sbjct: 267  LSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQ 326

Query: 860  AYSRATSVAREAIANIRTVAAYGIE----KRISIQFASELSQPNKQALLRGHISGFGYGV 915
               + T VA   + +I T+ A G+E     R +   A  L+   +Q L  G ++     +
Sbjct: 327  DAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNA--QQEL--GVLTQILGVL 382

Query: 916  SQLLSLCSYALGLWYASVLIKQKGSNFGD------IMKSF------MVLIITALAVAE-T 962
              LL+  + AL L    + + +     G       +M SF      +V     L   E  
Sbjct: 383  PTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGD 442

Query: 963  LALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPV--RPD 1020
            L    D++     + P+          +     S+    + G +ELRN++F Y     P 
Sbjct: 443  LNRLDDVL--RNPVDPLLE------EEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPL 494

Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 1080
            I   EN +L +  G+ +A+VG SGSGKST+  LV   Y P SG +L DG     +    L
Sbjct: 495  I---ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551

Query: 1081 RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD 1140
               + +V Q+  LF  T+ +N+   +    + +L++A K A  H  I+  P GY + + +
Sbjct: 552  ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611

Query: 1141 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVA 1200
             G  LSGGQ+QR+ IARA+++NPSIL+LDEATSALD  +E +I + L +   G T I+VA
Sbjct: 612  GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVA 669

Query: 1201 HRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1242
            HRLSTIR+ D+I VL++GKV + G+HE+L     G Y +LIR
Sbjct: 670  HRLSTIRDCDEIIVLERGKVVQRGTHEELW-AVGGAYARLIR 710

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score =  225 bits (576), Expect = 2e-67
 Identities = 92/220 (41%), Positives = 143/220 (65%)

Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           G+IEF  V F+YP++     +N++ ++ AG+  A +G  GSGKST++ ++  LY+PTSG 
Sbjct: 1   GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60

Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 494
           +LLDG D++ L    LR  +G V Q+  LF  ++ +NI LG   A  +R++ AA+ A   
Sbjct: 61  VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
            FV   P+G   Q+GE G  LSGGQ+Q +A+ARA+L +P ILLLDE TSA+D  SE  ++
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180

Query: 555 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594
             L +++ ++T I++ HR S +  VD I+V+ +G++V  G
Sbjct: 181 ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score =  240 bits (616), Expect = 3e-67
 Identities = 140/424 (33%), Positives = 217/424 (51%), Gaps = 31/424 (7%)

Query: 188 FAVGFTSV-----WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEII 242
           FA+ F  V       L  + L  +PLI + G      +S L+E+      +   V  E +
Sbjct: 272 FALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESL 331

Query: 243 SQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAG 302
           S +  + A   E +    +  ++    + G KS   + +    T    F  +   L    
Sbjct: 332 SGLETIKALNAEGRFQRRWEQTVAALARSGLKS---RFLSNLATN---FAQFIQQLVSVA 385

Query: 303 I------LVRHGD-TNGGKAFTTIINVIFSGFALGQAAPNLAAIA----KGKAAAANIIS 351
           I      L+  G+ T GG     I  V+ SG AL   AP L  +A    + + A   + S
Sbjct: 386 IVVVGVYLISDGELTMGG----LIACVMLSGRAL---AP-LGQLAGLLTRYQQAKTALQS 437

Query: 352 IIKENSHSSERPGDDG-ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFV 410
           + +      ERP     +  P+L G+IEF  V FAYP +     +N++ ++  G+  A +
Sbjct: 438 LDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAII 497

Query: 411 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 470
           G  GSGKST++ ++  LY+PT G +LLDG D++ +    LR  +G V Q+P LF  ++ +
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557

Query: 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530
           NI LG   A  + ++ AA+ A    FV   PDG   Q+GE G  LSGGQ+Q +A+ARA+L
Sbjct: 558 NIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617

Query: 531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590
           R+P ILLLDE TSA+D  SE   +  L++ ++ +T ++V HR S +  VD I+V+ NG++
Sbjct: 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677

Query: 591 VESG 594
           V  G
Sbjct: 678 VADG 681

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score =  232 bits (594), Expect = 6e-66
 Identities = 101/250 (40%), Positives = 139/250 (55%), Gaps = 8/250 (3%)

Query: 338 AIAKGKAAAANIISIIKENS--HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFE 395
           A A G AAA  + +++       + + P          A  +EFS V  AYP R      
Sbjct: 286 ARADGVAAAEALFAVLDAAPRPLAGKAP-----VTAAPAPSLEFSGVSVAYPGRRP-ALR 339

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
            ++F+V  G+  A VGPSG+GKST+++++    +PT G I ++G  L        R+Q+ 
Sbjct: 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399

Query: 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515
            V Q P LFA +IA NI L + DAS   + EA + A    FV  LP G  T +GEGG  L
Sbjct: 400 WVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGL 459

Query: 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 575
           SGGQ QR+A+ARA LR+  +LLLDE T+ LDAE+E  V  AL  +   RT ++V HRL+ 
Sbjct: 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLAL 519

Query: 576 VRDVDTIMVL 585
               D I+VL
Sbjct: 520 AALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score =  219 bits (560), Expect = 4e-65
 Identities = 84/223 (37%), Positives = 140/223 (62%), Gaps = 4/223 (1%)

Query: 1004 GNIELRNVSFKYPVRPDI-TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
            G+IE +NVS +Y  RP++  + +N++  +  G  + +VG++GSGKS+++  + R  +  S
Sbjct: 1    GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58

Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 1122
            G++LIDG DI  + L  LR +I ++ Q+P LFS TI  N+    E  S+ EL +A +   
Sbjct: 59   GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVG 117

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
               F+  +P G  + V + G  LS GQ+Q + +ARA+L+   IL+LDEAT+++D  ++ L
Sbjct: 118  LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177

Query: 1183 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1225
            IQ+ + +  +  T + +AHRL TI ++D+I VL +G+V E  S
Sbjct: 178  IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score =  218 bits (557), Expect = 9e-65
 Identities = 89/224 (39%), Positives = 141/224 (62%), Gaps = 7/224 (3%)

Query: 375 GQIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
           G IEF  V   Y  RP++  V +N++FS+  G+    VG +GSGKS+++  + RL E +S
Sbjct: 1   GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58

Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI-LLGKEDASMDRVIEAAKAA 491
           G IL+DG D+  + L  LR ++ ++ Q+P LF+ +I +N+   G+   S + + +A +  
Sbjct: 59  GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116

Query: 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
               FVE LP G  T V EGG  LS GQ+Q + +ARA+LR  KIL+LDEAT+++D E++ 
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176

Query: 552 IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595
           ++Q+ + +   + T + +AHRL T+ D D I+VL  G+VVE  +
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  229 bits (587), Expect = 1e-64
 Identities = 117/445 (26%), Positives = 200/445 (44%), Gaps = 27/445 (6%)

Query: 178 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKV 237
           LR ++   V   +       L+  ++ +  L+ +      + + TL  +    +G     
Sbjct: 133 LRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQ 192

Query: 238 AEEIISQ--VRAVYA------FVGEAKAIESYSHSLKEALKQGKKSGVAKGI---GVGLT 286
               +       V        F  E     +   +    LK  +K     G+    + L 
Sbjct: 193 GRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLI 252

Query: 287 YGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGK--- 343
            GLL      LL +    V  G              +   FA  +A   LA  A      
Sbjct: 253 AGLLV---IGLLLWMAAQVGAGALAQ----PGAALALLVIFAALEAFEPLAPGAFQHLGQ 305

Query: 344 --AAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSV 401
             A+A  +  I+ +    +  P +   T  +    +E   V F YP +     +N N ++
Sbjct: 306 VIASARRLNDILDQKPEVTF-PDEQTATTGQA---LELRNVSFTYPGQQTKALKNFNLTL 361

Query: 402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP 461
             G+  A +G SGSGKST++ ++   ++P  G I L+G ++ SL  + LRE + +++Q  
Sbjct: 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV 421

Query: 462 ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521
            LF+ ++ +N+ L   DAS + +  A +       +E  PDG  T +GEGG +LSGG+++
Sbjct: 422 HLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481

Query: 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDT 581
           R+A+ARA+L +  + LLDE T  LD  +E  V   L +    +T ++V HRL  +  +D 
Sbjct: 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDR 541

Query: 582 IMVLKNGQVVESGTHVDLISKGGEY 606
           I+VL NG+++E GTH +L++  G Y
Sbjct: 542 IIVLDNGKIIEEGTHAELLANNGRY 566

Length = 573

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  229 bits (585), Expect = 2e-64
 Identities = 101/262 (38%), Positives = 158/262 (60%), Gaps = 8/262 (3%)

Query: 991  PDDPASKEVTEIKGN----IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 1046
               P S E  E+       I L N+SF+YP         +LNL + AG+  A+VG SG+G
Sbjct: 302  VATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAG 359

Query: 1047 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 1106
            KST+++L++ F  P  G + ++G D+R L+  + R++I  V Q P LF+ TI ENI    
Sbjct: 360  KSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLAR 419

Query: 1107 EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 1166
             DAS+ E++ A   A    F+ + P+G  + +G+ G  LSGGQ QR+A+ARA+L   S+L
Sbjct: 420  PDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478

Query: 1167 LLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1226
            LLDE T+ LD  +E +I +AL +L + +T +++ HRL    +AD+I VL  G++ E G+H
Sbjct: 479  LLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTH 538

Query: 1227 EQLLRKENGIYKQLIRLQQDKN 1248
            E+L   + G+Y  L++ Q+ + 
Sbjct: 539  EELSE-KQGLYANLLKQQEGRR 559

Length = 559

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  227 bits (581), Expect = 8e-64
 Identities = 145/443 (32%), Positives = 229/443 (51%), Gaps = 48/443 (10%)

Query: 196 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 255
           WQLTLL L  +P++A+    Y   +    +  +AA+       +E ++ +R + AF    
Sbjct: 137 WQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAF---- 192

Query: 256 KAIESYSHSLKE--ALKQGKKS-GVAK---------GIGVGLTYGLLFCAWALLLWYAG- 302
             +E    +L    A   GKK+  VA+          I +G+         A LL   G 
Sbjct: 193 -GLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGM---------ANLLAIGGG 242

Query: 303 -ILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLA------AIAKGKAAAANIISIIKE 355
             +V +G    G+  T+   V++ G  +    P LA       + +G AA + I +++  
Sbjct: 243 SWMVVNGSLTLGQ-LTSF--VMYLGLMIW---PMLALAWMFNIVERGSAAYSRIRAML-- 294

Query: 356 NSHSSERPG-DDG-ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPS 413
               +E P   DG   +P+  G+++ +   F YP   H   EN+NF++  G+     GP+
Sbjct: 295 ----AEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPT 350

Query: 414 GSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL 473
           GSGKST++S++QR ++ + G I      L  LQL   R ++ +VSQ P LF+ ++ANNI 
Sbjct: 351 GSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIA 410

Query: 474 LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP 533
           LG+ DA+   +   A+ A+ H  +  LP GY T+VGE G  LSGGQKQRI+IARA+L N 
Sbjct: 411 LGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470

Query: 534 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES 593
           +IL+LD+A SA+D  +E  +   L +    RT I+ AHRLS + +   I+V+++G + + 
Sbjct: 471 EILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQR 530

Query: 594 GTHVDLISKGGEYAALVNLQSSE 616
           G H  L  + G Y  +   Q  E
Sbjct: 531 GNHDQLAQQSGWYRDMYRYQQLE 553

Length = 569

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  224 bits (574), Expect = 6e-63
 Identities = 150/452 (33%), Positives = 241/452 (53%), Gaps = 44/452 (9%)

Query: 824  LSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGD-YNR------AYSRATSVAREAIANIR 876
            +SW+L   + A LP+ + A     + +K +G   + R      A+S      +E++ +IR
Sbjct: 135  ISWQLT--LLALLPMPVMA-----IMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIR 187

Query: 877  TVAAYGIEKRISIQFASELSQPNKQALLRGHISG-------FGYGVSQLLSLCSYALGLW 929
             + A+G+E R S  FA++     K+ +    I            G++ LL++   +  + 
Sbjct: 188  MIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV 247

Query: 930  YASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALA--PDIV-KGSQALGPVFGILYRK 986
              S+ + Q        + SF++ +   L +   LALA   +IV +GS A   +  +L   
Sbjct: 248  NGSLTLGQ--------LTSFVMYL--GLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEA 297

Query: 987  TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 1046
              +      S+ V E +G +++    F YP + D    EN+N  +  G+ L + G +GSG
Sbjct: 298  PVV---KDGSEPVPEGRGELDVNIRQFTYP-QTDHPALENVNFTLKPGQMLGICGPTGSG 353

Query: 1047 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 1106
            KST++SL+ R +D   G +      +  L L S R ++ +V Q P LFS T+  NI  G 
Sbjct: 354  KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGR 413

Query: 1107 EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 1166
             DA++ E+    + A+ H  I R+P+GY + VG+RGV LSGGQKQR++IARA+L N  IL
Sbjct: 414  PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEIL 473

Query: 1167 LLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1226
            +LD+A SA+D  +E+ I   L +  EGRT I+ AHRLS +  A +I V+Q G +A+ G+H
Sbjct: 474  ILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNH 533

Query: 1227 EQLLRKENGIYKQLIRLQQ-----DKNPEAME 1253
            +QL  +++G Y+ + R QQ     D  PE  E
Sbjct: 534  DQLA-QQSGWYRDMYRYQQLEAALDDAPEIRE 564

Length = 569

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score =  227 bits (581), Expect = 1e-62
 Identities = 119/323 (36%), Positives = 175/323 (54%), Gaps = 15/323 (4%)

Query: 295 ALLLWYAGILVRHGDTNGGK--AFTTIINVIFSGFALG--QAAPNLAAIAKGKAAAANII 350
           A L   A  L+     + G   AF T     FSG          ++ A+      A  I+
Sbjct: 374 AALFAAAISLLGGAGLSLGSFLAFNTAF-GSFSGAVTQLSNTLISILAVIPLWERAKPIL 432

Query: 351 SIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFV 410
             + E   +   PG       KL+G IE   V F Y     ++ ++++  ++ G+  A V
Sbjct: 433 EALPEVDEAKTDPG-------KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIV 485

Query: 411 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 470
           GPSGSGKST++ ++     P SG +  DG DL  L ++ +R Q+G+V Q   L + SI  
Sbjct: 486 GPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545

Query: 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL 530
           NI  G    ++D   EAA+ A     +  +P G  T + EGG  LSGGQ+QR+ IARA++
Sbjct: 546 NIA-GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604

Query: 531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590
           R P+ILL DEATSALD  ++ IV  +LE++    T IV+AHRLST+R+ D I VL  G+V
Sbjct: 605 RKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRV 662

Query: 591 VESGTHVDLISKGGEYAALVNLQ 613
           V+ GT+ +L+++ G +A L   Q
Sbjct: 663 VQQGTYDELMAREGLFAQLARRQ 685

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score =  227 bits (580), Expect = 1e-62
 Identities = 171/603 (28%), Positives = 284/603 (47%), Gaps = 63/603 (10%)

Query: 667  PSIWELLK--LNAAEWPYAVLGSVGAI--LAGMEAPLFALGITHILTAFYSPHDSQIKRV 722
              + +LL+  L  A      + ++G +  L GM  P+     T IL     P D+    +
Sbjct: 121  LGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPI----ATGILIGTAIP-DADRSLL 175

Query: 723  VDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLT-ARVRLSMFSAILSNEIGWFDLDENN 781
            V Q+AL  +  AV      L Q     L  E    A ++ +++  +L   + +F   + +
Sbjct: 176  V-QIALALLAAAVGAAAFQLAQS-LAVLRLETRMDASLQAAVWDRLLRLPVSFFR--QYS 231

Query: 782  TGLLISTLAADA-TLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLI 840
            TG L S   A   + +R  L+      + +    +    + F  SW+LA V  A   + I
Sbjct: 232  TGDLAS--RAMGISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAI 289

Query: 841  GAFVAEQLFLKGFGGDYNRAYSRATSVAREA-----------IANIRTVAAYGIEKRISI 889
                          G       R                   I+ +R   A   E R   
Sbjct: 290  AVT--------LVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGA---ENRAFA 338

Query: 890  QFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK-- 947
            ++A   S+  K  L    I       + +L + + A     A  L+   G + G  +   
Sbjct: 339  RWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFN 398

Query: 948  -SFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 1006
             +F         ++ TL     ++   +   P+        A+   D A  +  ++ G I
Sbjct: 399  TAFGSFSGAVTQLSNTLISILAVIPLWERAKPIL------EALPEVDEAKTDPGKLSGAI 452

Query: 1007 ELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            E+  V+F+Y  RPD   I ++++L++  G  +A+VG SGSGKST++ L++ F  P SG+V
Sbjct: 453  EVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN----EDASEIELMKATKAA 1121
              DG D+  L+++++RR++G+V Q   L S +I+ENI  G     ++A      +A + A
Sbjct: 511  FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEA-----WEAARMA 565

Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
                 I  MP G  + + + G  LSGGQ+QR+ IARA+++ P ILL DEATSALD  ++ 
Sbjct: 566  GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625

Query: 1182 LIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241
            ++ E+L++L    T I++AHRLSTIRNAD+I VL  G+V + G++++L+ +E G++ QL 
Sbjct: 626  IVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE-GLFAQLA 682

Query: 1242 RLQ 1244
            R Q
Sbjct: 683  RRQ 685

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  229 bits (584), Expect = 8e-61
 Identities = 151/495 (30%), Positives = 239/495 (48%), Gaps = 117/495 (23%)

Query: 866  SVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYA 925
            S+  EA+  IRTV +Y  EK I  +F       +K  L    +     G+     L SYA
Sbjct: 237  SIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYA 296

Query: 926  LGLWYASVLI------KQKGSNF--GDIMKSFMVLIITALAVAETLALAPDIVKGSQALG 977
             G WY + +I      +Q  ++F  G ++   + ++I+   +   L    + +K  +A  
Sbjct: 297  FGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATN 356

Query: 978  PVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSL 1037
             ++ I+ RK  ++ +D   K++ +IK  I+ +NV F Y  R D+ I+++LN  ++ G++ 
Sbjct: 357  SLYEIINRKPLVENNDDG-KKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414

Query: 1038 AVVGQSGSGKSTVISLVMRFYDPISGTVLI-DGYDIRTLNLRSLRRKIGLVQQEPALFST 1096
            A VG+SG GKST++ L+ R YDP  G ++I D ++++ +NL+  R KIG+V Q+P LFS 
Sbjct: 415  AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN 474

Query: 1097 TIYENIKYG--------------NEDASEI----------------------------EL 1114
            +I  NIKY               NED ++                             EL
Sbjct: 475  SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534

Query: 1115 MKATKAANA---------------HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 1159
            ++  K                   H F+S +P+ Y++ VG    +LSGGQKQR++IARAI
Sbjct: 535  IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI 594

Query: 1160 LKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVL-- 1215
            ++NP IL+LDEATS+LD  SE L+Q+ ++ L   E R TI++AHRLSTIR A+ I VL  
Sbjct: 595  IRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654

Query: 1216 ----------------------------QQGK-----------------VAEIGSHEQLL 1230
                                        +                    + E G+H+ L+
Sbjct: 655  RERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALM 714

Query: 1231 RKENGIYKQLIRLQQ 1245
            + +NGIY  +I  Q+
Sbjct: 715  KNKNGIYYTMINNQK 729

Length = 1466

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  219 bits (559), Expect = 8e-61
 Identities = 136/450 (30%), Positives = 218/450 (48%), Gaps = 28/450 (6%)

Query: 806  IIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLK-GFGGDYNRAYSRA 864
             +V  V + V    ++F  S  LA ++   L LL+   +   LF + G     + A  RA
Sbjct: 139  AVVALVLIAVVTIGLSFF-SIPLALLLGLILLLLL--LIIPTLFYRAGRKFGAHLAQGRA 195

Query: 865  TSVAR--EAIANIRTVAAYGIEKRISIQF-ASELS-QPNKQALLRGHISGFGYGVSQLLS 920
               ++  + +     +  +G E        A+E S    ++   R        G+S  + 
Sbjct: 196  ALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFT------GLSDAIL 249

Query: 921  LCSYAL---GLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALG 977
            L    L   GL          G+         +++I  AL   E   LAP      Q LG
Sbjct: 250  LLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFE--PLAPGAF---QHLG 304

Query: 978  PVFGILYRKTAIQPDDPAS----KEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSA 1033
             V     R   I    P      ++       +ELRNVSF YP        +N NL ++ 
Sbjct: 305  QVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYP-GQQTKALKNFNLTLAQ 363

Query: 1034 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPAL 1093
            G  +A++G+SGSGKST++ L+   +DP  G++ ++G +I +L+ ++LR  I ++ Q   L
Sbjct: 364  GEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423

Query: 1094 FSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153
            FS T+ +N++  N DAS+ EL  A +       +   P+G  + +G+ G +LSGG+++R+
Sbjct: 424  FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483

Query: 1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIA 1213
            A+ARA+L +  + LLDE T  LD  +E  +   L +  EG+T +MV HRL  +   D+I 
Sbjct: 484  ALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRII 543

Query: 1214 VLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243
            VL  GK+ E G+H +LL   NG YK+L +L
Sbjct: 544  VLDNGKIIEEGTHAELL-ANNGRYKRLYQL 572

Length = 573

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score =  221 bits (564), Expect = 2e-60
 Identities = 149/542 (27%), Positives = 263/542 (48%), Gaps = 39/542 (7%)

Query: 87  PHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFF 146
           PH++   +   ++ L+   ++  + ++I +      G+R +  + L Y++ + +  MSFF
Sbjct: 188 PHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFF 247

Query: 147 DTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFF-------VGFAVGFTSVWQLT 199
            T  R +  I    +DA  + DA+          LS F        VG  +   ++  L 
Sbjct: 248 ST--RRTGEIVSRFTDASSIIDALASTI------LSLFLDMWILVIVGLFLVRQNM-LLF 298

Query: 200 LLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA---K 256
           LL+L  +P+ AV    +  T + L+     A         E ++ +  + +   EA    
Sbjct: 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYS 358

Query: 257 AIES-YSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKA 315
            I+S +   L ++ K  K     + I       L      ++LW    LV  G    G+ 
Sbjct: 359 KIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILN----VVILWTGAYLVMRGKLTLGQL 414

Query: 316 FTTIINVIFSGFALG-QAAPNL-AAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKL 373
            T   N + S F    +   NL   +   + A   +  +   +S    +     +     
Sbjct: 415 IT--FNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLN- 471

Query: 374 AGQIEFSEVCFAYP-SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
            G I  ++V ++Y       +  +++ ++        VG SGSGKST+  ++   ++  S
Sbjct: 472 -GDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS 528

Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAKAA 491
           G+ILL+G  LK +    LR+ +  + QEP +F+ SI  N+LLG KE+ S D +  A + A
Sbjct: 529 GEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIA 588

Query: 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
                +E +P GYQT++ E G+ +SGGQKQRIA+ARA+L + K+L+LDE+TS LD  +E 
Sbjct: 589 EIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE- 647

Query: 552 IVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 609
             ++ +  +  + ++T I VAHRLS  +  D I+VL +G+++E G+H +L+ + G YA+L
Sbjct: 648 --KKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705

Query: 610 VN 611
           ++
Sbjct: 706 IH 707

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  215 bits (550), Expect = 1e-59
 Identities = 86/247 (34%), Positives = 144/247 (58%), Gaps = 3/247 (1%)

Query: 363 PGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIIS 422
           P        +++  +  + V F YP +P  V + L+  + AG+  A +G +G GKST++ 
Sbjct: 327 PTTSTAAADQVS--LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ 384

Query: 423 MVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD 482
           ++ R ++P  G+ILL+G  +       LR+ + +VSQ   LF+ ++ +N+LL   +AS +
Sbjct: 385 LLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDE 444

Query: 483 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542
            +IE  +       +E    G    +GEGG QLSGG+++R+ IARA+L +  +LLLDE T
Sbjct: 445 ALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPT 503

Query: 543 SALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602
             LDAE+E  +   L +   N+T +++ HRL+ +   D I V+ NGQ++E GTH +L+++
Sbjct: 504 EGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563

Query: 603 GGEYAAL 609
            G Y  L
Sbjct: 564 QGRYYQL 570

Length = 574

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  211 bits (539), Expect = 5e-58
 Identities = 82/222 (36%), Positives = 138/222 (62%), Gaps = 3/222 (1%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL-YEPTSGKILLDGHDLKSLQLKWLREQM 454
            LNF++ AG+  A VGPSG+GK+++++ +  L + P  G + ++G +L+ L  +  R+ +
Sbjct: 368 PLNFTLPAGQRIALVGPSGAGKTSLLNAL--LGFLPYQGSLKINGIELRELDPESWRKHL 425

Query: 455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514
             V Q P L   ++ +N+LLG  DAS +++ +A + A    F+  LP G  T +G+    
Sbjct: 426 SWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485

Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 574
           LS GQ QR+A+ARA+L+  ++LLLDE T++LDA SE +V +AL      +TT++V H+L 
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545

Query: 575 TVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSE 616
            +   D I V+++GQ+V+ G + +L   GG +A L+  +  E
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587

Length = 588

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  210 bits (538), Expect = 6e-58
 Identities = 79/221 (35%), Positives = 139/221 (62%), Gaps = 2/221 (0%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085
             LN  + AG+ +A+VG SG+GK+++++ ++ F  P  G++ I+G ++R L+  S R+ + 
Sbjct: 368  PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426

Query: 1086 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQL 1145
             V Q P L   T+ +N+  GN DAS+ +L +A + A    F+  +P+G  + +GD+   L
Sbjct: 427  WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486

Query: 1146 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLST 1205
            S GQ QR+A+ARA+L+   +LLLDE T++LD  SE L+ +AL+     +TT+MV H+L  
Sbjct: 487  SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546

Query: 1206 IRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1246
            +   D+I V+Q G++ + G + + L +  G++  L+  +Q+
Sbjct: 547  LAQWDQIWVMQDGQIVQQGDYAE-LSQAGGLFATLLAHRQE 586

Length = 588

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score =  206 bits (526), Expect = 7e-57
 Identities = 84/210 (40%), Positives = 128/210 (60%), Gaps = 2/210 (0%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E   VS  YP R        ++  V  G  +A+VG SG+GKST+++L++ F DP  G++
Sbjct: 322  LEFSGVSVAYPGRR--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
             ++G  +   +  S R +I  V Q P LF+ TI ENI+    DAS+ E+ +A + A    
Sbjct: 380  AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDE 439

Query: 1126 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
            F++ +P+G  + +G+ G  LSGGQ QR+A+ARA L++  +LLLDE T+ LD  +E  + E
Sbjct: 440  FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499

Query: 1186 ALDKLMEGRTTIMVAHRLSTIRNADKIAVL 1215
            AL  L +GRT ++V HRL+    AD+I VL
Sbjct: 500  ALRALAQGRTVLLVTHRLALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score =  206 bits (527), Expect = 1e-55
 Identities = 155/547 (28%), Positives = 263/547 (48%), Gaps = 43/547 (7%)

Query: 712  YSPHDSQIKRVVDQVALIFVGLAVVTIPVYLL---QHYFYTLMGEHLTARVRLSMFSAIL 768
            Y PH     +++  + +I +GL +  I   +L   Q +   ++G+ L+  + LS    + 
Sbjct: 186  YIPH-----KMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLF 240

Query: 769  SNEIGWFDLDENNTGLLISTLAADATLVRSALADR-LSIIVQNVALTVTAFVIAFILSWR 827
               + +F      TG ++S    DA+ +  ALA   LS+ +    L +    +    +  
Sbjct: 241  ELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVR-QNML 296

Query: 828  LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIE--- 884
            L  +   S+P+     +  +        D  +A +   S   E +  I T+ +   E   
Sbjct: 297  LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAER 356

Query: 885  -KRISIQFASELSQPNKQALLRGHISGFGYG-VSQLLSLCSYALGLWYASVLIKQKGSNF 942
              +I  +F   L   NK    +   +  G   +  +  L    + LW  + L+ +     
Sbjct: 357  YSKIDSEFGDYL---NKS--FKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTL 411

Query: 943  GDIMKSFMVLIITALAVAETLA-LAPDIVKGSQA---LGPVFGILYRKTAIQPDDPASKE 998
            G ++ +F  L+   L   E +  L P +     A   L  V+        +  +    K+
Sbjct: 412  GQLI-TFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVY-------LVDSEFINKKK 463

Query: 999  VTE---IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 1055
             TE   + G+I + +VS+ Y    +I    +++L +       +VG SGSGKST+  L++
Sbjct: 464  RTELNNLNGDIVINDVSYSYGYGSNI--LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521

Query: 1056 RFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN-EDASEIEL 1114
             F+   SG +L++G+ ++ ++  +LR+ I  + QEP +FS +I EN+  G  E+ S+ E+
Sbjct: 522  GFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581

Query: 1115 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174
              A + A     I  MP GYQ+ + + G  +SGGQKQR+A+ARA+L +  +L+LDE+TS 
Sbjct: 582  WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641

Query: 1175 LDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
            LDT +E  I   L  L + +T I VAHRLS  + +DKI VL  GK+ E GSH++LL   N
Sbjct: 642  LDTITEKKIVNNLLNLQD-KTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL-DRN 699

Query: 1235 GIYKQLI 1241
            G Y  LI
Sbjct: 700  GFYASLI 706

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  204 bits (520), Expect = 1e-55
 Identities = 102/250 (40%), Positives = 152/250 (60%), Gaps = 4/250 (1%)

Query: 364 GDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 423
           G+D   L   +G+I+   V FAY    ++V +N+N SV +    A VG +GSGKST+ S+
Sbjct: 330 GNDDRPLQ--SGRIDIDNVSFAY-RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASL 386

Query: 424 VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR 483
           +   Y  T G+I LDG  L SL    LR+ + +V Q+P + A +   N+ LG+ D S ++
Sbjct: 387 LMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQ 445

Query: 484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
           V +A +          LPDG  T +GE G  LS GQKQ +A+AR +++ P+IL+LDEAT+
Sbjct: 446 VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505

Query: 544 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603
            +D+ +E  +Q+AL  +  + T +V+AHRLST+ + DTI+VL  GQ VE GTH  L++  
Sbjct: 506 NIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565

Query: 604 GEYAALVNLQ 613
           G Y  +  LQ
Sbjct: 566 GRYWQMYQLQ 575

Length = 592

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score =  201 bits (514), Expect = 3e-55
 Identities = 102/312 (32%), Positives = 161/312 (51%), Gaps = 13/312 (4%)

Query: 295 ALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALG---QAAPNLAAIAKGKAAAANIIS 351
            +L   A + +    T G      I   I  G AL     A       +  + A   +  
Sbjct: 241 LVLGLGAYLAIDGEITPG----MMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNE 296

Query: 352 IIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVG 411
           ++           D  + LP+  G +    V    P         ++FS+ AG+  A +G
Sbjct: 297 LLAN-----YPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIG 351

Query: 412 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 471
           PSGSGKST+  ++  ++ PTSG + LDG DLK    +   + +G + Q+  LF  ++A N
Sbjct: 352 PSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN 411

Query: 472 ILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531
           I    E+A  +++IEAAK A  H  +  LPDGY T +G GG  LSGGQ+QRIA+ARA+  
Sbjct: 412 IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471

Query: 532 NPKILLLDEATSALDAESELIVQRALEKIMSNR-TTIVVAHRLSTVRDVDTIMVLKNGQV 590
           +PK+++LDE  S LD E E  +  A++ + +   T +V+ HR S +  VD I+VL++G++
Sbjct: 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531

Query: 591 VESGTHVDLISK 602
              G   ++++K
Sbjct: 532 ARFGERDEVLAK 543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  200 bits (510), Expect = 3e-54
 Identities = 96/242 (39%), Positives = 152/242 (62%), Gaps = 4/242 (1%)

Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            G I++ NVSF Y  R D  + +N+NL V +   +A+VG +GSGKST+ SL+M +Y    G
Sbjct: 339  GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             + +DG  + +L+   LR+ + +VQQ+P + + T   N+  G  D SE ++ +A +    
Sbjct: 397  EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG-RDISEEQVWQALETVQL 455

Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
                  +P+G  + +G++G  LS GQKQ +A+AR +++ P IL+LDEAT+ +D+ +E  I
Sbjct: 456  AELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515

Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243
            Q+AL  + E  T +++AHRLSTI  AD I VL +G+  E G+H+QLL  + G Y Q+ +L
Sbjct: 516  QQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ-GRYWQMYQL 574

Query: 1244 QQ 1245
            Q 
Sbjct: 575  QL 576

Length = 592

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score =  207 bits (527), Expect = 6e-54
 Identities = 230/968 (23%), Positives = 431/968 (44%), Gaps = 81/968 (8%)

Query: 308  GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANI-ISIIKENSHSSERPGDD 366
            GD    +AFT++     S FA+ ++  N+      +   AN+ +  I+E   S ER    
Sbjct: 550  GDLTPARAFTSL-----SLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ 604

Query: 367  GITLPKLAGQIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIIS-MV 424
               L   A  I      F++ S+       ++N  +  G   A VG +G GK+++IS M+
Sbjct: 605  NPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML 664

Query: 425  QRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRV 484
              L    +  +++ G              +  V Q   +F  ++  NIL G  D   +R 
Sbjct: 665  GELSHAETSSVVIRG-------------SVAYVPQVSWIFNATVRENILFG-SDFESERY 710

Query: 485  IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544
              A         ++ LP    T++GE G  +SGGQKQR+++ARAV  N  I + D+  SA
Sbjct: 711  WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770

Query: 545  LDAE-SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTI------MVLKNGQVVESGTHV 597
            LDA  +  +    ++  +  +T ++V ++L  +  +D I      M+ + G   E     
Sbjct: 771  LDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSG 830

Query: 598  DLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQ 657
             L  K  E A  ++     + +N  +I   G +         S R      +  + R + 
Sbjct: 831  SLFKKLMENAGKMDATQEVN-TNDENILKLGPTVTIDV----SERNLGSTKQGKRGRSVL 885

Query: 658  SSDQSFAPSPSIWE-LLKLNAAE---WPYAVLGSVGAILAGMEAPLFALGITHILTAFYS 713
               +        W  L++ N A    W   +L     ++  +   +  +  +  L+  ++
Sbjct: 886  VKQEERETGIISWNVLMRYNKAVGGLWVVMIL-----LVCYLTTEVLRVSSSTWLS-IWT 939

Query: 714  PHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIG 773
               +          +++  L    + V     ++      H   R+  +M ++IL   + 
Sbjct: 940  DQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPML 999

Query: 774  WFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVA 833
            +F    N TG +I+  + D   +   +A+ +++ +  +   ++ F +   +S      + 
Sbjct: 1000 FFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS---TISLW 1054

Query: 834  ASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAR--------EAIANIRTVAAYGIEK 885
            A +PLLI  F A  L+ +      +R   R  SV R        EA+  + ++ AY    
Sbjct: 1055 AIMPLLI-LFYAAYLYYQ----STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109

Query: 886  RISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSN---- 941
            R++    +  S  N       + S   +   +L +L    + L  A+  + + G+     
Sbjct: 1110 RMAK--INGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWL-TATFAVLRNGNAENQA 1166

Query: 942  -FGDIMK---SFMVLIITALA-VAETLALAPDIVKGSQALGPVFGILYRKTAIQPDD-PA 995
             F   M    S+ + I T L+ V    + A + +   + +G    +    TAI  ++ P 
Sbjct: 1167 GFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPV 1226

Query: 996  SKEVTEIKGNIELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLV 1054
            S      +G+I+  +V  +Y  RP +  +   L+  VS    + VVG++G+GKS++++ +
Sbjct: 1227 SG--WPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282

Query: 1055 MRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIEL 1114
             R  +   G ++ID  D+    L  LRR + ++ Q P LFS T+  NI   +E  ++ +L
Sbjct: 1283 FRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEH-NDADL 1341

Query: 1115 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174
             +A + A+    I R P G  + V + G   S GQ+Q +++ARA+L+   IL+LDEAT++
Sbjct: 1342 WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATAS 1401

Query: 1175 LDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
            +D  +++LIQ  + +  +  T +++AHRL+TI + DKI VL  G+V E  S ++LL ++ 
Sbjct: 1402 VDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDT 1461

Query: 1235 GIYKQLIR 1242
              + +++ 
Sbjct: 1462 SAFFRMVH 1469

Length = 1495

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  196 bits (501), Expect = 4e-53
 Identities = 84/249 (33%), Positives = 148/249 (59%), Gaps = 3/249 (1%)

Query: 994  PASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISL 1053
            P +      + ++ L NVSF YP +P   + + L+L++ AG  +A++G++G GKST++ L
Sbjct: 327  PTTSTAAADQVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385

Query: 1054 VMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIE 1113
            + R +DP  G +L++G  I   +  +LR+ I +V Q   LFS T+ +N+     +AS+  
Sbjct: 386  LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA 445

Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
            L++  +       +    +G  + +G+ G QLSGG+++R+ IARA+L +  +LLLDE T 
Sbjct: 446  LIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTE 504

Query: 1174 ALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
             LD  +E  I E L +  + +T +M+ HRL+ +   D+I V+  G++ E G+H++LL ++
Sbjct: 505  GLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564

Query: 1234 NGIYKQLIR 1242
               Y QL +
Sbjct: 565  GR-YYQLKQ 572

Length = 574

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score =  195 bits (499), Expect = 6e-53
 Identities = 92/243 (37%), Positives = 146/243 (60%), Gaps = 9/243 (3%)

Query: 365 DDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMV 424
            + + LP   G +    +  A P +   + + ++F++ AG+    +GPSGSGKST+  ++
Sbjct: 323 AERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLL 382

Query: 425 QRLYEPTSGKILLDGHDLKSLQLKWLREQM----GLVSQEPALFATSIANNILLGKEDAS 480
             ++ PTSG + LDG DL+     W REQ+    G + Q+  LF  +IA NI    E+A 
Sbjct: 383 VGIWPPTSGSVRLDGADLRQ----WDREQLGRHIGYLPQDVELFDGTIAENIARFGEEAD 438

Query: 481 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
            ++VIEAA+ A  H  +  LP GY T++GEGG  LSGGQ+QRIA+ARA+  +P +++LDE
Sbjct: 439 PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE 498

Query: 541 ATSALDAESELIVQRALEKIMSN-RTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
             S LD+E E  +  A+    +   T +V+AHR S +  VD I+VL++G++   G   ++
Sbjct: 499 PNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558

Query: 600 ISK 602
           ++K
Sbjct: 559 LAK 561

Length = 580

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  198 bits (505), Expect = 2e-51
 Identities = 170/664 (25%), Positives = 300/664 (45%), Gaps = 120/664 (18%)

Query: 46   KIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLG 105
            K D  ++ L  L A   G   PVF +L+ + + +L   ++    L +  ++++LY++ + 
Sbjct: 824  KKDVTIIALSILVA---GGLYPVFALLYAKYVSTLFDFAN----LEANSNKYSLYILVIA 876

Query: 106  LVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNII-FHISSDAI 164
            +   +S  +   +    GE+    ++ +  +++L +++SFFD +     ++  HI+ D  
Sbjct: 877  IAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVH 936

Query: 165  LVQDAIGDKTG--HALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIA-VAGGAYTITMS 221
            L+      KTG  + +   + F V F V         +++    P++A V  G Y I M 
Sbjct: 937  LL------KTGLVNNIVIFTHFIVLFLVS-------MVMSFYFCPIVAAVLTGTYFIFMR 983

Query: 222  TLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEAL------------ 269
              + +      +   V ++ I+Q   V+A+  + +  +  S  ++EA             
Sbjct: 984  VFAIRARLTANK--DVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLE 1041

Query: 270  ---------------KQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGK 314
                           K  K+  +   +  G +        +   W+   L+R G      
Sbjct: 1042 DYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDD 1101

Query: 315  AFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPK-- 372
               ++   +F+G   G+           K +      +I   S+   R  + GI +    
Sbjct: 1102 FMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVR-DNGGIRIKNKN 1160

Query: 373  -LAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
             + G+IE  +V F Y SRP++ ++++L FS D+ KT A VG +GSGKST++S++ R Y+ 
Sbjct: 1161 DIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220

Query: 431  TSGKILL---------------DGHDLKSLQLKWLRE----QMGLVSQEPALFAT----- 466
             +   ++                G + +++ +K + E    + G   ++  +F       
Sbjct: 1221 KNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKIL 1280

Query: 467  ------------------------------SIANNILLGKEDASMDRVIEAAKAANAHSF 496
                                          SI  NI  GKEDA+ + V  A K A    F
Sbjct: 1281 LDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEF 1340

Query: 497  VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
            +E LP+ Y T VG  G  LSGGQKQRIAIARA+LR PKILLLDEATS+LD+ SE ++++ 
Sbjct: 1341 IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400

Query: 557  LEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKN----GQVVES-GTHVDLIS-KGGEYAA 608
            +  I   +++T I +AHR+++++  D I+V  N    G  V++ GTH +L+S + G Y  
Sbjct: 1401 IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKK 1460

Query: 609  LVNL 612
             V L
Sbjct: 1461 YVKL 1464

Length = 1466

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score =  173 bits (440), Expect = 3e-49
 Identities = 83/223 (37%), Positives = 131/223 (58%), Gaps = 22/223 (9%)

Query: 1004 GNIELRNVSFKYPVRPDI-TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
            G IE+ N+S +Y   PD+  + +N++ KV AG  + +VG++G+GKST+I  + RF +   
Sbjct: 5    GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62

Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 1122
            G + IDG DI T+ L  LR  + ++ Q+P LFS TI  N+   +E  S+ E+  A +   
Sbjct: 63   GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR--- 118

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
                           V + G+ LS GQ+Q + +ARA+LK P +L+LDEAT+++D A++ L
Sbjct: 119  ---------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163

Query: 1183 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1225
            IQ+ + +     T + +AHRL TI + DKI V+  G+V E   
Sbjct: 164  IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score =  174 bits (443), Expect = 3e-49
 Identities = 87/242 (35%), Positives = 130/242 (53%), Gaps = 33/242 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 1060
            IELR+++  Y    D    ++++L +  G   A++G SG GKST++ L+ R  D     P
Sbjct: 1    IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57

Query: 1061 ISGTVLIDGYDIRTLNLR--SLRRKIGLVQQEPALFSTTIYENIKYG--------NEDAS 1110
              G VL+DG DI  L++    LRR++G+V Q+P  F  +IY+N+ YG         E+  
Sbjct: 58   DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDR--GVQLSGGQKQRVAIARAILKNPSILLL 1168
            E       KAA        + +     V DR   + LSGGQ+QR+ +ARA+   P +LLL
Sbjct: 118  ERVEEALRKAA--------LWD----EVKDRLHALGLSGGQQQRLCLARALANEPEVLLL 165

Query: 1169 DEATSALDTASENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHE 1227
            DE TSALD  S   I+E + +L +  T ++V H +    R AD+ A L  G++ E G  E
Sbjct: 166  DEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225

Query: 1228 QL 1229
            Q+
Sbjct: 226  QI 227

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  172 bits (438), Expect = 2e-48
 Identities = 93/251 (37%), Positives = 137/251 (54%), Gaps = 34/251 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IELR ++  +  R   T+ + ++L V  G  LA++G SGSGKST++ L++    P SG V
Sbjct: 1    IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57

Query: 1066 LIDGYDIRTLN---LRSLRRKIGLVQQEPALF-STTIYENI-----KYGNEDASEIE--- 1113
            LIDG DI  L+   L  LRR++G++ Q  ALF S T++EN+     ++      EI    
Sbjct: 58   LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117

Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
            L K  +A    G     P            +LSGG K+RVA+ARA+  +P +LL DE T+
Sbjct: 118  LEK-LEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTA 165

Query: 1174 ALD----TASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228
             LD       ++LI+    +L  G T+IMV H L T    AD+IAVL  GK+   G+ E+
Sbjct: 166  GLDPIASGVIDDLIRSLKKEL--GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223

Query: 1229 LLRKENGIYKQ 1239
            L   ++ + +Q
Sbjct: 224  LRASDDPLVRQ 234

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score =  181 bits (460), Expect = 2e-48
 Identities = 115/474 (24%), Positives = 204/474 (43%), Gaps = 28/474 (5%)

Query: 745  HYFYTLMGEHLT----ARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSAL 800
             Y   L+G          +R+ ++  +    +          G L+  L AD   ++   
Sbjct: 70   RYLERLVGHDAALRSLGALRVRVYERLARQALAG--RRRLRRGDLLGRLGADVDALQDLY 127

Query: 801  ADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLK-GFGGDYNR 859
               +      + +   A     +LS   A ++AA L  L+  FVA  + L+     +   
Sbjct: 128  VRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGL--LLAGFVAPLVSLRAARAAEQAL 185

Query: 860  AYSRA--TSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQ 917
            A  R    +   +A+     + A G       Q      +  +        +  G  ++ 
Sbjct: 186  ARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATALGAALTL 245

Query: 918  LLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALG 977
            L +  +    LW                + +  VL++  LA  E  A  P      Q L 
Sbjct: 246  LAAGLAVLGALWAG---GPAVADGRLAPV-TLAVLVLLPLAAFEAFAALPAAA---QQLT 298

Query: 978  PVFGILYRKTAIQP--------DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNL 1029
             V     R   +            PA+  V   K  +ELR++S  YP      + + ++L
Sbjct: 299  RVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAPPVLDGVSL 356

Query: 1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQ 1089
             +  G  +A++G SGSGKST+++ +    DP+ G V +DG  + +L+   +RR++ +  Q
Sbjct: 357  DLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ 416

Query: 1090 EPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 1149
            +  LF TT+ EN++    DA++ EL  A +      ++  +P+G  + +G+ G +LSGG+
Sbjct: 417  DAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476

Query: 1150 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL 1203
            +QR+A+ARA+L +  ILLLDE T  LD  + + + E L   + GRT +++ H L
Sbjct: 477  RQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score =  168 bits (429), Expect = 4e-48
 Identities = 76/216 (35%), Positives = 110/216 (50%), Gaps = 44/216 (20%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+ NVSF+YP   +  +  N++  +  G SLA++G SGSGKST+  L++    P SG V
Sbjct: 1    LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
             +DG DI   +   L   +G + Q+  LFS +I ENI                       
Sbjct: 60   RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96

Query: 1126 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
                               LSGGQ+QR+ +ARA+  NP IL+LDE  S LD   E  + +
Sbjct: 97   -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137

Query: 1186 ALDKL-MEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
            A+  L   G T I++AHR  T+ +AD+I VL+ G+V
Sbjct: 138  AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score =  179 bits (457), Expect = 8e-48
 Identities = 85/243 (34%), Positives = 140/243 (57%), Gaps = 2/243 (0%)

Query: 991  PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 1050
            P    +  + E +G++ + NV+   P          ++  + AG +LA++G SGSGKST+
Sbjct: 302  PSRDPAMPLPEPEGHLSVENVTIVPP-GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTL 360

Query: 1051 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 1110
              L++  + P SG+V +DG D++  +  +  + IG + Q+  LF  T+ ENI    E+A 
Sbjct: 361  ARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENAD 420

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
              ++++A K A  H  I R+P+GY + +G  G  LSGGQ+QR+A+ARA+  +P +++LDE
Sbjct: 421  PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE 480

Query: 1171 ATSALDTASENLIQEALDKL-MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
              S LD   E  +  A+  L   G T +++ HR S +   DKI VLQ G++A  G  +++
Sbjct: 481  PNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEV 540

Query: 1230 LRK 1232
            L K
Sbjct: 541  LAK 543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score =  178 bits (453), Expect = 2e-47
 Identities = 112/428 (26%), Positives = 197/428 (46%), Gaps = 40/428 (9%)

Query: 168 DAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKG 227
           DA+ D     +R +    V   VG  +V  + +L++    ++A            +S   
Sbjct: 121 DALQDLY---VRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVS--- 174

Query: 228 EAAYGEAGKVAEEIISQVRAVY---------------AFVGEAKAIESYSHSLKEALKQG 272
                 A + AE+ ++++R                  A      A+     + +E  +  
Sbjct: 175 ----LRAARAAEQALARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADRELTRAE 230

Query: 273 KKSGVAKGIGVGLTYGLLFCAWALL--LWYAGILVRHGDTNGGKAFTTIINVIFSGF-AL 329
           +++  A  +G  LT  LL    A+L  LW  G  V  G          ++ +  + F A 
Sbjct: 231 RRAAAATALGAALT--LLAAGLAVLGALWAGGPAVADG-RLAPVTLAVLVLLPLAAFEAF 287

Query: 330 GQAAPNLAAIAKGKAAAANIISIIKENSH----SSERPGDDGITLPKLAGQIEFSEVCFA 385
                    + + +AAA  I+ ++         S+   G  G+  P     +E  ++   
Sbjct: 288 AALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKP----TLELRDLSAG 343

Query: 386 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL 445
           YP  P  V + ++  +  G+  A +GPSGSGKST+++ +  L +P  G++ LDG  + SL
Sbjct: 344 YPGAP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSL 402

Query: 446 QLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 505
               +R ++ + +Q+  LF T++  N+ L + DA+ + +  A +      ++  LPDG  
Sbjct: 403 DQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLD 462

Query: 506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRT 565
           T +GEGG +LSGG++QR+A+ARA+L +  ILLLDE T  LDAE+   +   L   +S RT
Sbjct: 463 TVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRT 522

Query: 566 TIVVAHRL 573
            +++ H L
Sbjct: 523 VVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  173 bits (440), Expect = 2e-47
 Identities = 87/247 (35%), Positives = 136/247 (55%), Gaps = 15/247 (6%)

Query: 1006 IELRNVSFKYPVR--PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            IEL NVS  +       +T  ++++L++  G    ++G SG+GKST++ L+     P SG
Sbjct: 2    IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61

Query: 1064 TVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATK 1119
            +V +DG D+  L+   LR LR+KIG++ Q   L S+ T++EN+ +  E A    + KA  
Sbjct: 62   SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEI 118

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
                   +  +  G          QLSGGQKQRVAIARA+  NP ILL DEATSALD  +
Sbjct: 119  KQRVAELLELV--GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176

Query: 1180 ENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK-ENG 1235
               I E L  +    G T +++ H +  ++   D++AVL QG++ E G+  ++    ++ 
Sbjct: 177  TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHA 236

Query: 1236 IYKQLIR 1242
            I ++ I 
Sbjct: 237  ITQEFIG 243

Length = 339

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  167 bits (426), Expect = 4e-47
 Identities = 88/223 (39%), Positives = 122/223 (54%), Gaps = 22/223 (9%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066
            EL+N+SF YP        ++++L +  G  + +VG +GSGKST++ L+     P SG VL
Sbjct: 1    ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59

Query: 1067 IDGYDIRTLNLRSLRRKIGLVQQEPA--LFSTTIYENIKYG----NEDASEIE--LMKAT 1118
            +DG D+  L+L+ LRRK+GLV Q P    F  T+ E + +G         EIE  + +A 
Sbjct: 60   VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            +     G   R P             LSGGQKQRVAIA  +  +P ILLLDE T+ LD A
Sbjct: 120  ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168

Query: 1179 SENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219
                + E L KL  EG+T I+V H L  +   AD++ VL+ GK
Sbjct: 169  GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score =  177 bits (452), Expect = 8e-47
 Identities = 84/231 (36%), Positives = 139/231 (60%), Gaps = 2/231 (0%)

Query: 1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
            +G + +  ++   P +    + + ++  + AG +L ++G SGSGKST+  L++  + P S
Sbjct: 332  QGALSVERLTAAPPGQKKPIL-KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390

Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 1122
            G+V +DG D+R  +   L R IG + Q+  LF  TI ENI    E+A   ++++A + A 
Sbjct: 391  GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
             H  I R+P+GY + +G+ G  LSGGQ+QR+A+ARA+  +P +++LDE  S LD+  E  
Sbjct: 451  VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510

Query: 1183 IQEALDKL-MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
            +  A+      G T +++AHR S + + DKI VLQ G++A  G  E++L K
Sbjct: 511  LAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561

Length = 580

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  183 bits (466), Expect = 1e-46
 Identities = 127/437 (29%), Positives = 215/437 (49%), Gaps = 32/437 (7%)

Query: 51  LMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALV 110
           L+ +  + A I G TLP F  +FG ++ ++         L   +++    LV +G+   +
Sbjct: 61  LLGVSFVCATISGGTLPFFVSVFGVIMKNMN--------LGENVNDIIFSLVLIGIFQFI 112

Query: 111 SAWIGVAFWMQTGERQTAR-LRLKYLQSVLKKDMSFFDTEARD---SNIIFHISSDAILV 166
            ++I  +F M     +  + L+L++L+SV  +D  F D        S++ F++      V
Sbjct: 113 LSFIS-SFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQ----V 167

Query: 167 QDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEK 226
              IG K      Y S F   +        +LTL    V PLI + G         +++K
Sbjct: 168 NAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICG-VICNKKVKINKK 226

Query: 227 GEAAYGE-AGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGL 285
               Y      + EE +  +R V ++ GE   ++ ++ S K   K   K+   + + +G+
Sbjct: 227 TSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGM 286

Query: 286 TYGLLFCAWALLLWYAGILV--------RHGDTNGGKAFTTIINVIFSGFALGQAAPNLA 337
             G +  ++A   WY   ++         + D +GG   + ++ V+ S F L    PN+ 
Sbjct: 287 INGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNIT 346

Query: 338 AIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFEN 396
              K   A  ++  II  N        DDG  L  +  +I+F  V F Y +R  + ++++
Sbjct: 347 EYMKSLEATNSLYEII--NRKPLVENNDDGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKD 403

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL-DGHDLKSLQLKWLREQMG 455
           LNF++  GKT+AFVG SG GKSTI+ +++RLY+PT G I++ D H+LK + LKW R ++G
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIG 463

Query: 456 LVSQEPALFATSIANNI 472
           +VSQ+P LF+ SI NNI
Sbjct: 464 VVSQDPLLFSNSIKNNI 480

Length = 1466

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score =  165 bits (420), Expect = 2e-46
 Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 23/223 (10%)

Query: 375 GQIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
           G+IE   +   Y   P +  V +N++F V AG+    VG +G+GKST+I  + R  E   
Sbjct: 5   GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62

Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
           GKI +DG D+ ++ L+ LR  + ++ Q+P LF+ +I +N  L   D   D  I  A    
Sbjct: 63  GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN--LDPFDEYSDEEIYGA---- 116

Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
                         +V EGG  LS GQ+Q + +ARA+L+ P++L+LDEAT+++D  ++ +
Sbjct: 117 -------------LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163

Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595
           +Q+ + +  +N T + +AHRL T+ D D I+V+  G+V E   
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  164 bits (418), Expect = 4e-46
 Identities = 81/229 (35%), Positives = 124/229 (54%), Gaps = 26/229 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +EL+ +S  Y     +   ++L+L V  G  LA++G SG GK+T++ L+     P SG +
Sbjct: 1    LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG------NEDASEIELMKAT 1118
            LIDG D+  +     RR IG+V Q+ ALF   T+ ENI +G       +      + +  
Sbjct: 58   LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            +     G ++R P            +LSGGQ+QRVA+ARA+ + PS+LLLDE  SALD  
Sbjct: 116  ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164

Query: 1179 SENLIQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIG 1224
                ++E L +L    G TTI V H     +  AD+IAV+ +G++ ++G
Sbjct: 165  LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  162 bits (412), Expect = 9e-46
 Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 48/220 (21%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +EL+NVS +Y      T+  +++L + AG  +A++G SGSGKST++  +    +P SG++
Sbjct: 1    LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57

Query: 1066 LIDGYDIRTLN--LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAAN 1122
            LIDG D+  L   L  LRR+IG+V Q+ ALF   T+ ENI  G                 
Sbjct: 58   LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
                                  LSGGQ+QRVA+ARA+  +P +LLLDE TSALD  +   
Sbjct: 101  ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138

Query: 1183 IQEALDKL--MEGRTTIMVAHRLS-TIRNADKIAVLQQGK 1219
            ++  L  L    G T ++V H L    R AD++ VL+ GK
Sbjct: 139  VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score =  163 bits (414), Expect = 2e-45
 Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 30/235 (12%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PT 431
           IE  ++   Y        ++++  +  G+  A +GPSG GKST++ ++ RL +     P 
Sbjct: 1   IELRDLNVYY--GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58

Query: 432 SGKILLDGHDLKSLQLK--WLREQMGLVSQEPALFATSIANNILLG-------KEDASMD 482
            G++LLDG D+  L +    LR ++G+V Q+P  F  SI +N+  G        ++   +
Sbjct: 59  EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118

Query: 483 RVIEAAKAANAHSFVEGLPDGYQTQVGE--GGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
           RV EA + A        L D    +V +      LSGGQ+QR+ +ARA+   P++LLLDE
Sbjct: 119 RVEEALRKA-------ALWD----EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE 167

Query: 541 ATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
            TSALD  S   ++  + ++    T ++V H +     V D    L NG++VE G
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFG 222

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score =  160 bits (408), Expect = 3e-45
 Identities = 75/215 (34%), Positives = 111/215 (51%), Gaps = 43/215 (20%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +E   V F YP     V  N++FS++ G++ A +GPSGSGKST+  ++  L  PTSG++ 
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           LDG D+       L + +G + Q+  LF+ SIA NIL                       
Sbjct: 61  LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL----------------------- 97

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
                              SGGQ+QR+ +ARA+  NP+IL+LDE  S LD E E  + +A
Sbjct: 98  -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138

Query: 557 LEKI-MSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590
           +  +  +  T IV+AHR  T+   D I+VL++G+V
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  164 bits (418), Expect = 4e-45
 Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 12/242 (4%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+RN++ KY    D T  + ++ +V  G    ++G +G+GK+T++ ++     P SG +
Sbjct: 5    IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 1124
            L+ GYD+       +RR+IG V QEP+L+   T+ EN+++    A    L K        
Sbjct: 63   LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFF---ARLYGLSKEEAEERIE 118

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
              +     G +     +   LSGG KQR++IA A+L +P +L+LDE TS LD  S   I 
Sbjct: 119  ELLELF--GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176

Query: 1185 EALDKL--MEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241
            E L +L    G T ++  H L       D++ +L  GK+   G+ E+L  K  G     +
Sbjct: 177  ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIEL 236

Query: 1242 RL 1243
              
Sbjct: 237  EP 238

Length = 293

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  163 bits (414), Expect = 6e-45
 Identities = 93/258 (36%), Positives = 138/258 (53%), Gaps = 41/258 (15%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+R V+  +  R    I + ++L V  G  LA++G SGSGKST++ L++    P  G +
Sbjct: 9    IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65

Query: 1066 LIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENI-----KYGNEDASEIE--- 1113
            LIDG DI  L+   L  +R+++G++ Q+ ALFS+ T++EN+     ++     S I    
Sbjct: 66   LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125

Query: 1114 LMK----ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 1169
            LMK      + A A       P            +LSGG ++RVA+ARAI  +P +L LD
Sbjct: 126  LMKLELVGLRGAAAD----LYPS-----------ELSGGMRKRVALARAIALDPELLFLD 170

Query: 1170 EATSALD----TASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224
            E TS LD       + LI+E  D L  G T IMV H L ++   AD++AVL  GKV   G
Sbjct: 171  EPTSGLDPISAGVIDELIRELNDAL--GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228

Query: 1225 SHEQLLRKENGIYKQLIR 1242
            + E+LL  ++   +Q   
Sbjct: 229  TPEELLASDDPWVRQFFN 246

Length = 263

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  160 bits (407), Expect = 2e-44
 Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 34/240 (14%)

Query: 1006 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            +E++N+S  +P     +   ++++  +  G +L +VG+SGSGKST+   ++    P SG+
Sbjct: 2    LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61

Query: 1065 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-----TIYENIK---------YGNE 1107
            ++ DG D+  L+    +  R++I +V Q+P   S+     TI E I             E
Sbjct: 62   IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKE 119

Query: 1108 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 1167
               E  L+           ++R P     H      +LSGGQ+QRVAIARA+  NP +L+
Sbjct: 120  ARKEAVLLLLVGVGLPEEVLNRYP-----H------ELSGGQRQRVAIARALALNPKLLI 168

Query: 1168 LDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224
             DE TSALD + +  I + L KL E  G T + + H L  +   AD++AV+  GK+ E G
Sbjct: 169  ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score =  160 bits (407), Expect = 2e-44
 Identities = 84/244 (34%), Positives = 130/244 (53%), Gaps = 31/244 (12%)

Query: 1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            IEL+NVS  +      +T  ++++L V  G    ++G+SG+GKST+I  +     P SG+
Sbjct: 2    IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61

Query: 1065 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENIKY----GNEDASEIELMK 1116
            VL+DG D+  L+   LR  RR+IG++ Q   L S+ T++EN+           +EIE   
Sbjct: 62   VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE--- 118

Query: 1117 ATKAANAHGFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
                        R+ E     G +        QLSGGQKQRV IARA+  NP +LL DEA
Sbjct: 119  -----------ERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEA 167

Query: 1172 TSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228
            TSALD  +   I   L  +    G T +++ H +  ++   D++AV+++G+V E G+ E+
Sbjct: 168  TSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227

Query: 1229 LLRK 1232
            +   
Sbjct: 228  VFAN 231

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score =  157 bits (400), Expect = 3e-44
 Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 40/218 (18%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +  + V F+YP +   V +NL+  +  G+  A +G SGSGKST++ ++    +P  G+I 
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           LDG  +  L+ K L   + +++Q P LF T++ NN+                        
Sbjct: 61  LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
                          G + SGG++QR+A+AR +L++  I+LLDE T  LD  +E  +   
Sbjct: 96  ---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140

Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594
           + +++ ++T I + H L+ +  +D I+ L+NG+++  G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  159 bits (405), Expect = 5e-44
 Identities = 87/245 (35%), Positives = 125/245 (51%), Gaps = 31/245 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE  N+SF+YP        ++++L++  G  + ++G +GSGKST++ L+     P SG V
Sbjct: 4    IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61

Query: 1066 LIDGYDIRT-LNLRSLRRKIGLVQQEPA--LFSTTIYENIKYG--NEDASEIELMKATKA 1120
            L+DG D  +  +L  LR+K+GLV Q P   LF  T+ + + +G  N      E+ +    
Sbjct: 62   LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121

Query: 1121 A----NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
            A         + R P             LSGGQKQRVAIA  +   P ILLLDE T+ LD
Sbjct: 122  ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170

Query: 1177 TASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKV------AEIGSHE 1227
                  + E L KL E  G+T I+V H L  +   AD++ VL  GK+      AEI +  
Sbjct: 171  PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230

Query: 1228 QLLRK 1232
            +LL  
Sbjct: 231  ELLLA 235

Length = 235

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  160 bits (406), Expect = 6e-44
 Identities = 84/244 (34%), Positives = 126/244 (51%), Gaps = 30/244 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+ N+SF Y  +P   I ++L+  +  G    ++G +GSGKST++  +     P SG V
Sbjct: 3    LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEP-ALFSTTIYENIKYG----------NEDASEIEL 1114
            L+DG DI +L+ + L +K+  V Q P A F  T+YE +  G               E  +
Sbjct: 60   LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119

Query: 1115 MKATKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATS 1173
             +A +                    DR V +LSGG++QRV IARA+ +   ILLLDE TS
Sbjct: 120  EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167

Query: 1174 ALDTASENLIQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLL 1230
             LD A +  + E L  L    G T +MV H L+   R AD + +L+ GK+   G+ E++L
Sbjct: 168  HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227

Query: 1231 RKEN 1234
             +EN
Sbjct: 228  TEEN 231

Length = 258

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score =  156 bits (397), Expect = 9e-44
 Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 41/219 (18%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + + NVSF YP   +  + +NL+L++  G  +A++G+SGSGKST++ L+     P  G +
Sbjct: 1    LSINNVSFSYP-EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
             +DG  +  L  ++L   I ++ Q P LF TT+  N+                       
Sbjct: 60   TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95

Query: 1126 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
                            G + SGG++QR+A+AR +L++  I+LLDE T  LD  +E  +  
Sbjct: 96   ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139

Query: 1186 ALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1224
             + ++++ +T I + H L+ I + DKI  L+ GK+   G
Sbjct: 140  LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  162 bits (411), Expect = 1e-43
 Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 23/242 (9%)

Query: 376 QIEFSEVCFAYPSRPHMVF---ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
            IE   V   +           ++++  +  G+ F  +G SG+GKST++ ++  L  PTS
Sbjct: 1   MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60

Query: 433 GKILLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAA 488
           G + +DG DL +L   +L+ LR+++G++ Q   L ++ ++  N+    E A + +     
Sbjct: 61  GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120

Query: 489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
           + A     V GL D           QLSGGQKQR+AIARA+  NPKILL DEATSALD E
Sbjct: 121 RVAELLELV-GLSDKADRYPA----QLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175

Query: 549 S-ELIVQRALEKIMSNR---TTIV-VAHRLSTVRDV-DTIMVLKNGQVVESGT--HVDLI 600
           + + I++  L+ I  NR    TIV + H +  V+ + D + VL  G++VE GT   V   
Sbjct: 176 TTQSILEL-LKDI--NRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232

Query: 601 SK 602
            K
Sbjct: 233 PK 234

Length = 339

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score =  156 bits (398), Expect = 1e-43
 Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 29/223 (13%)

Query: 377 IEFSEVCFAYPSR---PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
           I   +  F + S         +++N  V  G+  A VGP GSGKS+++S +    E  SG
Sbjct: 1   ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 434 KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASM-DRVIEAAKAA 491
            + + G              +  VSQEP +   +I  NIL GK  D    ++VI+A    
Sbjct: 61  SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC--- 104

Query: 492 NAHSF---VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
              +    +E LPDG  T++GE G  LSGGQKQRI++ARAV  +  I LLD+  SA+DA 
Sbjct: 105 ---ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161

Query: 549 -SELIVQRAL-EKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 589
               I +  +   +++N+T I+V H+L  +   D I+VL NG+
Sbjct: 162 VGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  156 bits (396), Expect = 3e-43
 Identities = 73/216 (33%), Positives = 119/216 (55%), Gaps = 9/216 (4%)

Query: 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 437
           E   + F+YP       ++++ ++  G+    VGP+GSGKST++ ++  L  PTSG++L+
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60

Query: 438 DGHDLKSLQLKWLREQMGLVSQEPA--LFATSIANNILLGKEDASMDRVIEAAKAANAHS 495
           DG DL  L LK LR ++GLV Q P    F  ++   +  G E+  +       +   A  
Sbjct: 61  DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
            V GL +G + +       LSGGQKQR+AIA  +  +P ILLLDE T+ LD      +  
Sbjct: 121 LV-GL-EGLRDRSPF---TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE 175

Query: 556 ALEKIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQ 589
            L+K+ +   TI++  H L  + ++ D ++VL++G+
Sbjct: 176 LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  159 bits (405), Expect = 3e-43
 Identities = 81/240 (33%), Positives = 128/240 (53%), Gaps = 28/240 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE  NVS +Y  +      +++NL +  G  L ++G SGSGK+T + ++ R  +P SG +
Sbjct: 2    IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENI-------KYGNEDASEI--ELM 1115
            LIDG DI  L+   LRRKIG V Q+  LF   T+ ENI        +  E   +   EL+
Sbjct: 59   LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118

Query: 1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
                  +   +  R P            +LSGGQ+QRV +ARA+  +P ILL+DE   AL
Sbjct: 119  DLVG-LDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGAL 166

Query: 1176 DTASENLIQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
            D  +   +QE + +L +  G+T + V H +   ++ AD+IAV+  G++ +  + +++L  
Sbjct: 167  DPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226

Length = 309

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score =  156 bits (396), Expect = 2e-42
 Identities = 79/218 (36%), Positives = 122/218 (55%), Gaps = 19/218 (8%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRR 1082
            +++L V  G    ++G SGSGKST++  + R  +P SG VLIDG DI  ++   LR LRR
Sbjct: 42   DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101

Query: 1083 K-IGLVQQEPALF-STTIYENIKYGNEDA---SEIELMKATKAANAHGFISRMPEGYQSH 1137
            K I +V Q  AL    T+ EN+ +G E           +A +A    G      EG++  
Sbjct: 102  KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGL-----EGWEHK 156

Query: 1138 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL--MEGRT 1195
              D   +LSGG +QRV +ARA+  +P ILL+DEA SALD      +Q+ L +L     +T
Sbjct: 157  YPD---ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT 213

Query: 1196 TIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
             + + H L   +R  D+IA+++ G++ ++G+ E++L  
Sbjct: 214  IVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  153 bits (389), Expect = 5e-42
 Identities = 89/241 (36%), Positives = 134/241 (55%), Gaps = 17/241 (7%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE + VS+         I +++++K   G    +VG SG+GKST+I L+ R  DP  G++
Sbjct: 4    IEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
            LIDG DI+T+++  LRRKIG+V Q+P LF  T+ +NI+YG        ++K  K  +   
Sbjct: 61   LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-------PMLKGEKNVDVEY 113

Query: 1126 FISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
            ++S +  G       R V+ LSGG+ QRV+IAR +  NP +LLLDE TSALD  S  +I+
Sbjct: 114  YLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171

Query: 1185 EALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIG-SHEQLLRKENGIYKQL 1240
            E + KL      T I + H +    R  D  A L +G + E   +++     +N + K  
Sbjct: 172  ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231

Query: 1241 I 1241
            I
Sbjct: 232  I 232

Length = 241

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score =  153 bits (389), Expect = 7e-42
 Identities = 85/239 (35%), Positives = 130/239 (54%), Gaps = 27/239 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE  NV+ +Y          NLNL+++ G  L ++G SGSGK+T + ++ R  +P SG +
Sbjct: 1    IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENI-------KYGNE--DASEIELM 1115
             IDG DIR  +   LRRKIG V Q+  LF   T+ ENI       K+  E       EL+
Sbjct: 59   FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118

Query: 1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
                   A  F  R P            +LSGGQ+QRV +ARA+  +P +LL+DE   AL
Sbjct: 119  ALVGLDPAE-FADRYPH-----------ELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166

Query: 1176 DTASENLIQEALDKLME--GRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLR 1231
            D  + + +QE   +L +  G+T + V H +    R AD+IA+++ G++ ++G+ +++LR
Sbjct: 167  DPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  167 bits (425), Expect = 9e-42
 Identities = 80/240 (33%), Positives = 145/240 (60%), Gaps = 4/240 (1%)

Query: 1004 GNIELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
            G+I+  +V  +Y  RP++  +   L+ ++S    + +VG++G+GKS++++ + R  +   
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293

Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 1122
            G +LIDG DI    L  LR+ +G++ Q P LFS T+  N+   NE  ++ +L ++ + A+
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEH-NDADLWESLERAH 1352

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
                I R   G  + V + G   S GQ+Q +++ARA+L+   IL+LDEAT+A+D  ++ L
Sbjct: 1353 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412

Query: 1183 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1242
            IQ+ + +  +  T +++AHRL+TI + D+I VL  G+V E  + E LL  E   + ++++
Sbjct: 1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472

Length = 1622

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  152 bits (386), Expect = 1e-41
 Identities = 86/230 (37%), Positives = 126/230 (54%), Gaps = 20/230 (8%)

Query: 1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            IEL+NVS  Y +    +   +++NL++ AG  +A+VG SGSGKST+++L+     P SG 
Sbjct: 2    IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 1065 VLIDGYDIRTLN---LRSLRRK-IGLVQQEPALFST-TIYENI----KYGNEDASEIELM 1115
            VLI+G D+  L+   L  LRRK IG V Q   L    T+ EN+        + A   +  
Sbjct: 62   VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR- 120

Query: 1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
             A +     G   R+ +   S       +LSGGQ+QRVAIARA++ NP I+L DE T  L
Sbjct: 121  AAEELLEVLGLEDRLLKKKPS-------ELSGGQQQRVAIARALINNPKIILADEPTGNL 173

Query: 1176 DTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1223
            D+ +   + E L +L +  G+T IMV H     + AD++  L+ GK+ E 
Sbjct: 174  DSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223

Length = 226

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  151 bits (385), Expect = 2e-41
 Identities = 74/235 (31%), Positives = 111/235 (47%), Gaps = 40/235 (17%)

Query: 377 IEFSEVCFAYPS--RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           +E   V   Y          E+++ SV+ G+  A VGPSG GKST++ ++  L  PTSG+
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANA 493
           +L+DG  +            G V Q+ AL    ++ +N+ LG E   + +   A     A
Sbjct: 61  VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPK---AEARERA 112

Query: 494 HSFVEGLPDGYQTQVGEGGT------QLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
              +E         VG  G       QLSGG +QR+A+ARA+  +P +LLLDE  SALDA
Sbjct: 113 EELLE--------LVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164

Query: 548 ESELIVQRALEKIMS-NRTTIV-VAH------RLSTVRDVDTIMVLKN--GQVVE 592
            +   +Q  L  I      T++ V H       L+     D ++VL    G++V 
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLA-----DRVVVLSARPGRIVA 214

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  152 bits (386), Expect = 3e-41
 Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 27/233 (11%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +E   + F Y  +P  + ++L+FS+  G+    +GP+GSGKST++  +  L +P SG++L
Sbjct: 3   LEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEP-ALFATSIANNILLGK----------EDASMDRVI 485
           LDG D+ SL  K L +++  V Q P A F  ++   +LLG+               + V 
Sbjct: 61  LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
           EA +        +               +LSGG++QR+ IARA+ +   ILLLDE TS L
Sbjct: 121 EALELLGLEHLAD-----------RPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169

Query: 546 DAESELIVQRALEKIM--SNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGT 595
           D   ++ V   L  +      T ++V H L+   R  D +++LK+G++V  GT
Sbjct: 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222

Length = 258

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  148 bits (377), Expect = 5e-41
 Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 47/219 (21%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +E   V   Y      V  +++ +++AG+  A +GPSGSGKST++  +  L EP SG IL
Sbjct: 1   LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58

Query: 437 LDGHDLKSL--QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANA 493
           +DG DL  L  +L  LR ++G+V Q+ ALF   ++  NI LG                  
Sbjct: 59  IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------ 100

Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
                                LSGGQ+QR+A+ARA+  +P +LLLDE TSALD  +   V
Sbjct: 101 ---------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139

Query: 554 QRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQ 589
           +  L+ +      T ++V H L     + D ++VL++G+
Sbjct: 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score =  150 bits (381), Expect = 6e-41
 Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 22/239 (9%)

Query: 377 IEFSEVC--FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           IE   V   F          ++++ SV  G+ F  +G SG+GKST+I  +  L  PTSG 
Sbjct: 2   IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61

Query: 435 ILLDGHDLKSLQLKWLRE---QMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKA 490
           +L+DG DL  L  K LR+   ++G++ Q   L ++ ++  N+ L  E A + +     + 
Sbjct: 62  VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121

Query: 491 ANAHSFV--EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
                 V  E   D Y  Q       LSGGQKQR+ IARA+  NPK+LL DEATSALD E
Sbjct: 122 LELLELVGLEDKADAYPAQ-------LSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174

Query: 549 SELIVQRALEKIMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
           +   +   L  I  NR    T +++ H +  V+ + D + V++ G+VVE GT  ++ + 
Sbjct: 175 TTQSILALLRDI--NRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score =  149 bits (379), Expect = 7e-41
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 26/222 (11%)

Query: 1006 IELRNVSFKYPVRPDIT--IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            I + + SF +      T    +++NL+V  G  +A+VG  GSGKS+++S ++   + +SG
Sbjct: 1    ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAAN 1122
            +V + G              I  V QEP + + TI ENI +G   D    E  K  KA  
Sbjct: 61   SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYE--KVIKACA 105

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD--TAS- 1179
                +  +P+G  + +G++G+ LSGGQKQR+++ARA+  +  I LLD+  SA+D      
Sbjct: 106  LEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRH 165

Query: 1180 --ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGK 1219
              EN I      L+  +T I+V H+L  + +AD+I VL  G+
Sbjct: 166  IFENCILGL---LLNNKTRILVTHQLQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  154 bits (391), Expect = 7e-41
 Identities = 79/233 (33%), Positives = 130/233 (55%), Gaps = 17/233 (7%)

Query: 1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
            K  +E+RNVS  +    D T  ++++L +  G  + ++G SG GK+T++ ++  F  P S
Sbjct: 3    KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59

Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAA 1121
            G +L+DG DI   ++   +R IG+V Q  ALF   T+ EN+ +G      +++ K  K A
Sbjct: 60   GEILLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFG------LKVRKKLKKA 111

Query: 1122 NAHGFISRMPEGYQ-SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
                 +    E        DR   QLSGGQ+QRVA+ARA++  P +LLLDE  SALD   
Sbjct: 112  EIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL 171

Query: 1180 ENLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
               +++ L +L    G T + V H +   +  +D+IAV+  G++ ++G+ E++
Sbjct: 172  REQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224

Length = 352

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  149 bits (379), Expect = 8e-41
 Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 19/226 (8%)

Query: 1006 IELRNVSFKYP-VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            +E+RNVS  Y      +T  E+++L V  G  +A+VG SG GKST++ ++     P SG 
Sbjct: 1    LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA-AN 1122
            VL+DG  +            G V Q+ AL    T+ +N+  G     E++ +   +A   
Sbjct: 61   VLVDGEPVTGPG-----PDRGYVFQQDALLPWLTVLDNVALG----LELQGVPKAEARER 111

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
            A   +  +  G          QLSGG +QRVA+ARA+  +P +LLLDE  SALD  +   
Sbjct: 112  AEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQ 169

Query: 1183 IQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQ--GKVAEI 1223
            +QE L  +    G+T ++V H +   +  AD++ VL    G++   
Sbjct: 170  LQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score =  150 bits (381), Expect = 1e-40
 Identities = 84/244 (34%), Positives = 129/244 (52%), Gaps = 33/244 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE++N+S  +    D  + + ++L V  G  + ++G SGSGKST++  +    +P SG++
Sbjct: 3    IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59

Query: 1066 LIDGYDI-RTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA-AN 1122
             +DG D+    ++  LRRK+G+V Q+  LF   T+ EN+         +++ K +KA A 
Sbjct: 60   TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEAR 114

Query: 1123 AHGFISRMPEGYQSHVG--DRG----VQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
                           VG  D+      QLSGGQ+QRVAIARA+  +P ++L DE TSALD
Sbjct: 115  EKA------LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168

Query: 1177 TASENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
                 L+ E LD +M     EG T I+V H +   R  AD++  + QGK+ E G  E+  
Sbjct: 169  P---ELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224

Query: 1231 RKEN 1234
                
Sbjct: 225  DNPK 228

Length = 240

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score =  149 bits (380), Expect = 1e-40
 Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 46/241 (19%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   +  ++      V + ++ SV+ G+    +GPSGSGKST++  +  L EP SG I 
Sbjct: 3   IEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60

Query: 437 LDGHD-LKSLQLKWLREQMGLVSQEPALFA-TSIANNILLG--------KEDAS------ 480
           +DG D      +  LR ++G+V Q+  LF   ++  N+ L         K +A       
Sbjct: 61  VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL 120

Query: 481 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
           +++V  A K   A ++    P            QLSGGQ+QR+AIARA+  +PK++L DE
Sbjct: 121 LEKVGLADK---ADAY----PA-----------QLSGGQQQRVAIARALAMDPKVMLFDE 162

Query: 541 ATSALDAES-----ELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
            TSALD E      +++   A E +    T I+V H +   R+V D ++ +  G+++E G
Sbjct: 163 PTSALDPELVGEVLDVMKDLAEEGM----TMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218

Query: 595 T 595
            
Sbjct: 219 P 219

Length = 240

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  152 bits (387), Expect = 2e-40
 Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 30/244 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +EL+NV   +       + +++NL +  G  + ++G SG GKST++ ++    +P SG +
Sbjct: 4    LELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEIE--LMKAT 1118
            LIDG D+   +L   +R I +V Q  AL+   T+YENI    K      +EI+  + +  
Sbjct: 61   LIDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            K       ++R P           +QLSGGQ+QRVA+ARA+++ P + LLDE  S LD  
Sbjct: 119  KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167

Query: 1179 SENLIQEALDKLME--GRTTIMVAHRL---STIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
               L++  + KL E  G TTI V H      T+  AD+I V+  G++ ++G+  +L  + 
Sbjct: 168  LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELYERP 225

Query: 1234 NGIY 1237
              ++
Sbjct: 226  ANLF 229

Length = 338

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  148 bits (377), Expect = 3e-40
 Identities = 74/238 (31%), Positives = 123/238 (51%), Gaps = 37/238 (15%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   +  ++  R   V + ++  V  G+  A +GPSGSGKST++ ++  L  P SG++L
Sbjct: 1   IELRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58

Query: 437 LDGHDLKSL---QLKWLREQMGLVSQEPALF-ATSIANNILL-----GKEDASM--DRVI 485
           +DG D+  L   +L  LR +MG++ Q  ALF + ++  N+        +       + V+
Sbjct: 59  IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
           E  +A       +  P            +LSGG K+R+A+ARA+  +P++LL DE T+ L
Sbjct: 119 EKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAGL 167

Query: 546 DAES-----ELI--VQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           D  +     +LI  +++ L       T+I+V H L T   + D I VL +G++V  GT
Sbjct: 168 DPIASGVIDDLIRSLKKEL-----GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  146 bits (371), Expect = 2e-39
 Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 24/231 (10%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   + F YP R     ++++  ++ G+    +GP+GSGKST++ ++  L +PTSG++L
Sbjct: 4   IEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62

Query: 437 LDGHDLKSLQLKW-LREQMGLVSQEPA--LFATSIANNILLG------KEDASMDRVIEA 487
           +DG D  S +    LR+++GLV Q P   LF  ++ + +  G        +   +RV EA
Sbjct: 63  VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122

Query: 488 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
            +       ++  P             LSGGQKQR+AIA  +   P+ILLLDE T+ LD 
Sbjct: 123 LELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171

Query: 548 ESELIVQRALEKIM--SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           +    +   L+K+     +T I+V H L  V +  D ++VL +G+++  G 
Sbjct: 172 KGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222

Length = 235

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  142 bits (361), Expect = 7e-39
 Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 48/218 (22%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+RN+S +Y      T  ++++L V  G    ++G +G+GK+T+I +++    P SG +
Sbjct: 1    IEVRNLSKRYG---KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 1124
             + G DI+      ++R+IG + +EP+L+   T+ EN+K                     
Sbjct: 58   KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLKL-------------------- 96

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
                                 SGG KQR+A+A+A+L +P +L+LDE TS LD  S     
Sbjct: 97   ---------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135

Query: 1185 EALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220
            E L +L  EG+T ++ +H L       D++A+L  G++
Sbjct: 136  ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  144 bits (365), Expect = 8e-39
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 15/221 (6%)

Query: 386 YPSRPHMVF--ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443
           +P+    V   ++++FS+  G+T   VG SGSGKST+   +  L +PTSG I+ DG DL 
Sbjct: 11  FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL 70

Query: 444 SL---QLKWLREQMGLVSQEP--ALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFV 497
            L     K  R+++ +V Q+P  +L    +I   I             EA K A     V
Sbjct: 71  KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV 130

Query: 498 E-GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
             GLP+    +      +LSGGQ+QR+AIARA+  NPK+L+ DE TSALD   +  +   
Sbjct: 131 GVGLPEEVLNRYP---HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDL 187

Query: 557 LEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
           L+K+      T + + H L  V  + D + V+  G++VE G
Sbjct: 188 LKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score =  148 bits (375), Expect = 8e-39
 Identities = 86/240 (35%), Positives = 129/240 (53%), Gaps = 37/240 (15%)

Query: 1006 IELRNVSFKYPV-RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            IEL+N+S  +P     I    N++L + AG    V+G SG+GKST+I  +     P SG 
Sbjct: 2    IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61

Query: 1065 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEI---- 1112
            VL+DG D+  L+   LR  RR+IG++ Q   L S+ T+++N+    +      +EI    
Sbjct: 62   VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121

Query: 1113 ----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL 1168
                EL+  +  A+           Y +       QLSGGQKQRVAIARA+  NP +LL 
Sbjct: 122  TELLELVGLSDKADR----------YPA-------QLSGGQKQRVAIARALASNPKVLLC 164

Query: 1169 DEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225
            DEATSALD A+   I E L  +    G T +++ H +  ++   D++AV+  G++ E G+
Sbjct: 165  DEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224

Length = 343

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  146 bits (370), Expect = 9e-39
 Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 22/223 (9%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
             + ++F V+ G+ F  +GP+G+GK+T++ ++  L +PTSG+IL+ G+D+   +   +R 
Sbjct: 20  ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRR 78

Query: 453 QMGLVSQEPALFAT-SIANNILL------GKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 505
           ++G V QEP+L+   ++  N+          ++ + +R+ E  +         GL D   
Sbjct: 79  RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF-------GLEDKAN 131

Query: 506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI--MSN 563
            +V      LSGG KQR++IA A+L +P++L+LDE TS LD ES   +   L ++     
Sbjct: 132 KKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187

Query: 564 RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGE 605
            T ++  H L    ++ D +++L +G+++  GT  +L  K G 
Sbjct: 188 VTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230

Length = 293

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score =  157 bits (398), Expect = 1e-38
 Identities = 142/541 (26%), Positives = 247/541 (45%), Gaps = 49/541 (9%)

Query: 91   TSRISEHALYLVYLGLVAL--VSAWIGVAFWMQTGERQTA-RLRLKYLQSVLKKDMSFFD 147
            T +      Y+V   L+    V+     +FW+ +     A RL    L S+L+  M FF 
Sbjct: 943  TPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH 1002

Query: 148  TEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFA-VGFTSVWQLTLLTLAVV 206
            T      +I   S D   +   + +     +  L Q    FA +G  S    T+   A++
Sbjct: 1003 TNP-TGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS----TISLWAIM 1057

Query: 207  PLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRA-VYAFVGEA----KAIESY 261
            PL+ +   AY    ST  E               + S  R+ +YA  GEA     +I +Y
Sbjct: 1058 PLLILFYAAYLYYQSTSRE------------VRRLDSVTRSPIYAQFGEALNGLSSIRAY 1105

Query: 262  SHSLKEALKQGK------KSGVAKGIGVGLTYGLLFCAWALLLWYAGI--LVRHGDTNGG 313
                + A   GK      +  +A           L     +++W      ++R+G+    
Sbjct: 1106 KAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQ 1165

Query: 314  KAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSH----SSERPGDDGIT 369
              F + + ++ S + L      L+ + +  + A N ++ ++   +     SE        
Sbjct: 1166 AGFASTMGLLLS-YTL-NITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENN 1223

Query: 370  LP----KLAGQIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISM 423
             P       G I+F +V   Y  RP +  V   L+F V   +    VG +G+GKS++++ 
Sbjct: 1224 RPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNA 1281

Query: 424  VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR 483
            + R+ E   G+I++D  D+    L  LR  + ++ Q P LF+ ++  NI    E    D 
Sbjct: 1282 LFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAD- 1340

Query: 484  VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
            + EA + A+    ++  P G   +V EGG   S GQ+Q +++ARA+LR  KIL+LDEAT+
Sbjct: 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATA 1400

Query: 544  ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603
            ++D  ++ ++QR + +   + T +V+AHRL+T+ D D I+VL +GQV+E  +  +L+S+ 
Sbjct: 1401 SVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRD 1460

Query: 604  G 604
             
Sbjct: 1461 T 1461

Length = 1495

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score =  144 bits (365), Expect = 1e-38
 Identities = 83/239 (34%), Positives = 140/239 (58%), Gaps = 2/239 (0%)

Query: 373 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
           L G+I+  ++C  Y +    V +++   +  G+     G +GSGKS++     R+ +   
Sbjct: 16  LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD 75

Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
           GKI++DG D+  L L  LR ++ ++ Q+P LF+ SI  N L  +   + DR+ EA + A 
Sbjct: 76  GKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALEIAQ 134

Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
             + V+ LP G    V EGG   S GQ+Q   +ARA +R   IL++DEAT+++D  +E I
Sbjct: 135 LKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194

Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS-KGGEYAALV 610
           +Q+ +    ++RT + +AHR+ST+ D D ++VL  G +VE  T  +L++ + G +A+LV
Sbjct: 195 LQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  143 bits (364), Expect = 2e-38
 Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 34/243 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--- 1062
            IE+R+++  Y    D    +++NL +   +  A++G SG GKST++  + R  D I    
Sbjct: 8    IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64

Query: 1063 --GTVLIDGYDIRT--LNLRSLRRKIGLVQQEPALFSTTIYENIKYG-------NEDASE 1111
              G VL+DG +I    +++  LRR++G+V Q+P  F  +IY+N+ YG       +++  E
Sbjct: 65   VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILL 1167
            I +  + K A                V DR     + LSGGQ+QR+ IARA+   P +LL
Sbjct: 125  I-VESSLKKAALWD-----------EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLL 172

Query: 1168 LDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSH 1226
            +DE TSALD  S   I+E + +L +  T ++V H +    R +D  A    G++ E G  
Sbjct: 173  MDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 232

Query: 1227 EQL 1229
            +++
Sbjct: 233  DKI 235

Length = 253

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  141 bits (359), Expect = 3e-38
 Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 35/233 (15%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +E   +   Y S      ++L+ +V+ G+  A +GPSG GK+T++ ++  L  P SG+IL
Sbjct: 1   LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLG------KEDASMDRVIEAAK 489
           +DG D+  +  +  R  +G+V Q+ ALF   ++A NI  G       +     RV E  +
Sbjct: 59  IDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE 116

Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
                  +   P            +LSGGQ+QR+A+ARA+ R P +LLLDE  SALDA+ 
Sbjct: 117 LVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165

Query: 550 ELIVQRALEKIMSNR--TTIVVAH------RLSTVRDVDTIMVLKNGQVVESG 594
              ++  L+++      TTI V H       L+     D I V+  G++V+ G
Sbjct: 166 REELREELKELQRELGITTIYVTHDQEEALALA-----DRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score =  143 bits (362), Expect = 3e-38
 Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 24/231 (10%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IEF  V   Y      V  NLN  +  G+    +GPSGSGK+T + M+ RL EPTSG+I 
Sbjct: 1   IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNI-----LLG-KEDASMDRVIEAAK 489
           +DG D++      LR ++G V Q+  LF   ++  NI     LL   ++   +R  E   
Sbjct: 60  IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLA 119

Query: 490 AAN--AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
                   F +  P            +LSGGQ+QR+ +ARA+  +P +LL+DE   ALD 
Sbjct: 120 LVGLDPAEFADRYPH-----------ELSGGQQQRVGVARALAADPPLLLMDEPFGALDP 168

Query: 548 ESELIVQRALEKIMS--NRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGT 595
            +   +Q   +++     +T + V H +    R  D I ++KNG++V+ GT
Sbjct: 169 ITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  141 bits (358), Expect = 6e-38
 Identities = 79/231 (34%), Positives = 117/231 (50%), Gaps = 29/231 (12%)

Query: 1006 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKST---VISLVMRFYDPI 1061
            IEL+N+S  Y    + +   + ++L +  G  +A+VG SGSGKST   ++  + R   P 
Sbjct: 1    IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57

Query: 1062 SGTVLIDGYDIRTLN---LRSLRRK-IGLVQQEPALFST-TIYENIKYGNEDASEIELM- 1115
            SG V +DG DI  L+   L + RR+ IG V Q   L    T  EN+        E+ L+ 
Sbjct: 58   SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV--------ELPLLL 109

Query: 1116 ----KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
                K  +   A   + R+  G    +     +LSGGQ+QRVAIARA+  +P I+L DE 
Sbjct: 110  AGVPKKERRERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP 167

Query: 1172 TSALDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
            T  LD+ +   + E L +L    G T ++V H       AD+I  L+ GK+
Sbjct: 168  TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  155 bits (392), Expect = 7e-38
 Identities = 82/241 (34%), Positives = 144/241 (59%), Gaps = 5/241 (2%)

Query: 1003 KGNIELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
            +G +E RN   +Y  R D+  +  ++N+ +  G  + +VG++G+GKS++   + R  +  
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339

Query: 1062 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA 1121
             G ++IDG +I  + L  LR KI ++ Q+P LFS ++  N+   ++  S+ E+  A + A
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ-YSDEEVWWALELA 1398

Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
            +   F+S +P+       + G  LS GQ+Q V +ARA+L+   IL+LDEAT+A+D  ++N
Sbjct: 1399 HLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458

Query: 1182 LIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241
            LIQ  +    E  T + +AHRL+TI +  ++ VL +G+VAE G+   LL ++ GI+  + 
Sbjct: 1459 LIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLL-QQRGIFYSMA 1517

Query: 1242 R 1242
            +
Sbjct: 1518 K 1518

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  141 bits (359), Expect = 9e-38
 Identities = 79/256 (30%), Positives = 121/256 (47%), Gaps = 45/256 (17%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +E   V  ++      V E++N SV+ G+  A +GPSG GKST++ ++  L +PTSG++L
Sbjct: 4   LEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANA-- 493
           LDG  +           +G V QE AL    ++ +N+ LG E     +     +A     
Sbjct: 62  LDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116

Query: 494 ----HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
                 F +  P            QLSGG +QR+AIARA+   PK+LLLDE   ALDA +
Sbjct: 117 LVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165

Query: 550 ELIVQRALEKIMS--NRTTIVVAH------RLSTVRDVDTIMVLKN--GQVVESGTHVDL 599
              +Q  L ++     +T ++V H       L+     D ++VL N  G++ E    +DL
Sbjct: 166 REELQDELLRLWEETRKTVLLVTHDVDEAVYLA-----DRVVVLSNRPGRIGEE-LEIDL 219

Query: 600 ----ISKGGEYAALVN 611
               I    E+  L  
Sbjct: 220 PRPRIRGDPEFLELRE 235

Length = 248

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score =  142 bits (359), Expect = 1e-37
 Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 19/211 (9%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--- 452
           +++  V  G+ F  +G SGSGKST++  + RL EPTSGK+L+DG D+ ++  K LRE   
Sbjct: 42  DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101

Query: 453 -QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 510
            ++ +V Q  AL    ++  N+  G E   + R     +AA A   V GL         E
Sbjct: 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-GLEGWEHKYPDE 160

Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI---VQRALEKIMSN--RT 565
               LSGG +QR+ +ARA+  +P ILL+DEA SALD    LI   +Q  L ++ +   +T
Sbjct: 161 ----LSGGMQQRVGLARALAVDPDILLMDEAFSALDP---LIRREMQDELLRLQAELQKT 213

Query: 566 TIVVAHRLS-TVRDVDTIMVLKNGQVVESGT 595
            + + H L   +R  D I ++K+G++V+ GT
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRLVQVGT 244

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score =  141 bits (358), Expect = 1e-37
 Identities = 77/241 (31%), Positives = 141/241 (58%), Gaps = 6/241 (2%)

Query: 1004 GNIELRNVSFKYP--VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
            G I++ ++  +Y   ++P   + +++   +  G+ + + G++GSGKS++     R  D  
Sbjct: 18   GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74

Query: 1062 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA 1121
             G ++IDG DI  L L +LR ++ ++ Q+P LFS +I  N+       ++  L +A + A
Sbjct: 75   DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD-PECKCTDDRLWEALEIA 133

Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
                 +  +P G  + V + G   S GQ+Q   +ARA ++  SIL++DEAT+++D A+EN
Sbjct: 134  QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193

Query: 1182 LIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241
            ++Q+ +      RT + +AHR+STI +AD + VL +G + E  + E LL +E+G++  L+
Sbjct: 194  ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253

Query: 1242 R 1242
            R
Sbjct: 254  R 254

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region

 Score =  142 bits (360), Expect = 1e-37
 Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 7/272 (2%)

Query: 690 AILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYT 749
            ILAG  A +F L +           D         ++L  + +AV  +   LLQ  FY 
Sbjct: 8   LILAGATALVFPL-LLGRFLDSLI--DGNGDERSSLISLAILLIAVGVLQGLLLQGSFYL 64

Query: 750 LMGEHLTARVRLSMFSAILSNEIGWFD--LDENNTGLLISTLAADATLVRSALADRLSII 807
             GE L  R+R  +F A+L   +G      D N+ G L S L  D + +R  L D+L + 
Sbjct: 65  --GERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLF 122

Query: 808 VQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSV 867
            Q++A  V  F++ F   W+L  V+ A LPLLI         L+       +AY++A SV
Sbjct: 123 FQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSV 182

Query: 868 AREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALG 927
           A E+++ IRTV A+G E+    ++   L    K  + +   +G  +G++QL+S  SYAL 
Sbjct: 183 AEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALA 242

Query: 928 LWYASVLIKQKGSNFGDIMKSFMVLIITALAV 959
           LW+ + L+   G + G +     + +  +  +
Sbjct: 243 LWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274

This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  141 bits (358), Expect = 1e-37
 Identities = 73/237 (30%), Positives = 125/237 (52%), Gaps = 22/237 (9%)

Query: 1006 IELRNVSFKYPVRPDI-TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            + +RN+S  Y           N++L++  G +L +VG+SGSGKST+  L+     P SG+
Sbjct: 4    LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63

Query: 1065 VLIDGYDI-RTLNLRSLRRKIGLVQQEPAL-------FSTTIYENIKYGNEDASEIELMK 1116
            +L+DG  +      ++  R + +V Q+P             + E ++      S+    +
Sbjct: 64   ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ---QR 120

Query: 1117 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
              +  +  G    +P  +      R  +LSGGQ+QR+AIARA++  P +L+LDE TSALD
Sbjct: 121  IAELLDQVG----LPPSFLD---RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD 173

Query: 1177 TASENLIQEALDKLMEGR--TTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
             + +  I   L +L + R  T + ++H L+ + +  D+IAV+  G++ EIG  E+LL
Sbjct: 174  VSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230

Length = 252

>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region

 Score =  142 bits (359), Expect = 2e-37
 Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 12/282 (4%)

Query: 52  MFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVS 111
           + +  L   + GAT  VF +L GR +DSL   +             +L ++ + +  L  
Sbjct: 1   LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLI-----SLAILLIAVGVLQG 55

Query: 112 AWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSN----IIFHISSDAILVQ 167
             +  +F+   GER   R+R +  +++L++ +        D+N    +   +++D   ++
Sbjct: 56  LLLQGSFY--LGERLGQRIRKRLFRALLRQILGLPM-SFFDTNSVGELTSRLTNDVSKIR 112

Query: 168 DAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKG 227
           D +GDK G   + L+    GF V F   W+LTL+ LA++PL+ +        +  L+ K 
Sbjct: 113 DGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKE 172

Query: 228 EAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTY 287
           + AY +AG VAEE +S +R V AF  E   +E Y  +L++A K G K  +  G+  G+T 
Sbjct: 173 QKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQ 232

Query: 288 GLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFAL 329
            + + ++AL LW+   LV  G  + G  F  +   +     L
Sbjct: 233 LISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274

This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  138 bits (351), Expect = 2e-37
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 46/222 (20%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066
            E+ N+S  Y  R   T+ ++L+L + AG  + ++G +G+GKST++  +     P SG +L
Sbjct: 1    EVENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57

Query: 1067 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF 1126
            +DG D+ +L+ + L RKI  V Q                         ++    A     
Sbjct: 58   LDGKDLASLSPKELARKIAYVPQ------------------------ALELLGLA----- 88

Query: 1127 ISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
                      H+ DR   +LSGG++QRV +ARA+ + P ILLLDE TS LD A +  + E
Sbjct: 89   ----------HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138

Query: 1186 ALDKL--MEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIG 1224
             L +L    G+T +MV H L+   R AD++ +L+ G++   G
Sbjct: 139  LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score =  140 bits (356), Expect = 2e-37
 Identities = 81/240 (33%), Positives = 128/240 (53%), Gaps = 27/240 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 1060
            IE+ N++  Y    +    +N+NL +   +  A++G SG GKST++  + R  D      
Sbjct: 2    IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58

Query: 1061 ISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG--------NEDAS 1110
            I G VL DG DI  + +++  LRR++G+V Q+P  F  +IY+NI YG         ++  
Sbjct: 59   IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
            EI      KAA        + +  +  + D  + LSGGQ+QR+ IARA+   P +LLLDE
Sbjct: 119  EIVEESLKKAA--------LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE 170

Query: 1171 ATSALDTASENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQL 1229
             TSALD  +   I+E + +L +  T ++V H +    R +D+ A    G++ E G  EQ+
Sbjct: 171  PTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  142 bits (361), Expect = 3e-37
 Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 25/239 (10%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
            IEF  V   Y ++     +++N +++ G+    +GPSGSGK+T + M+ RL EPTSG+I
Sbjct: 1   MIEFENVSKRYGNKK--AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNI-----LLG-KEDASMDRVIEAA 488
           L+DG D+  L    LR ++G V Q+  LF   ++A NI     LLG  ++    R  E  
Sbjct: 59  LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118

Query: 489 K--AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
                +   + +  P            +LSGGQ+QR+ +ARA+  +P ILL+DE   ALD
Sbjct: 119 DLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALD 167

Query: 547 AESELIVQRALEKIM--SNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLISK 602
             +   +Q  ++++     +T + V H +   ++  D I V+  G++V+  T  ++++ 
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226

Length = 309

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  143 bits (363), Expect = 3e-37
 Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 36/238 (15%)

Query: 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
              +E   V  ++        ++++  +  G+    +GPSG GK+T++ M+    +P+SG
Sbjct: 3   KPALEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60

Query: 434 KILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLG-------KEDASMDRVI 485
           +ILLDG D+  +  +  +  +G+V Q  ALF   ++  N+  G       K+     RV 
Sbjct: 61  EILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
           EA +      F +  P            QLSGGQ+QR+A+ARA++  PK+LLLDE  SAL
Sbjct: 119 EALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSAL 167

Query: 546 DAESELIVQRALEKIMSNR--TTIVVAH------RLSTVRDVDTIMVLKNGQVVESGT 595
           DA+    +++ L+++      T + V H       +S     D I V+ +G++ + GT
Sbjct: 168 DAKLREQMRKELKELQRELGITFVYVTHDQEEALAMS-----DRIAVMNDGRIEQVGT 220

Length = 352

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  137 bits (349), Expect = 3e-37
 Identities = 73/223 (32%), Positives = 113/223 (50%), Gaps = 49/223 (21%)

Query: 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 437
           E   +   Y  R   V ++L+ S++AG+    +GP+G+GKST++  +  L +P+SG+ILL
Sbjct: 1   EVENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58

Query: 438 DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFV 497
           DG DL SL  K L  ++  V Q  AL    +A+  L        DR              
Sbjct: 59  DGKDLASLSPKELARKIAYVPQ--ALELLGLAH--LA-------DRPF------------ 95

Query: 498 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-----ELI 552
                           +LSGG++QR+ +ARA+ + P ILLLDE TS LD        EL+
Sbjct: 96  ---------------NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL 140

Query: 553 VQRALEKIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESG 594
            + A E+    +T ++V H L+   R  D +++LK+G++V  G
Sbjct: 141 RRLARER---GKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  148 bits (375), Expect = 3e-37
 Identities = 77/253 (30%), Positives = 134/253 (52%), Gaps = 41/253 (16%)

Query: 1006 IELRNVSFKYPVRPDITI--------FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 1057
            + +RN+S +Y  R  + +         ++++  +  G +L +VG+SGSGKST+  ++   
Sbjct: 281  LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340

Query: 1058 YDPISGTVLIDGYD--IRTLNLRSLRRKIGLVQQEPALFST-----TIYENIKYGNEDAS 1110
              P SG+++ DG D  +    LR LRR+I +V Q+P  +S+     T+ + +     +  
Sbjct: 341  LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILA----EPL 394

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVG-DRGV------QLSGGQKQRVAIARAILKNP 1163
             I    +     A     R+ E  +  VG           +LSGGQ+QRVAIARA+   P
Sbjct: 395  RIHGGGSGAERRA-----RVAELLE-LVGLPPEFLDRYPHELSGGQRQRVAIARALALEP 448

Query: 1164 SILLLDEATSALDTASE----NLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQG 1218
             +L+LDE  SALD + +    NL+++  ++L  G T + ++H L+ +R  AD++AV+  G
Sbjct: 449  KLLILDEPVSALDVSVQAQVLNLLKDLQEEL--GLTYLFISHDLAVVRYIADRVAVMYDG 506

Query: 1219 KVAEIGSHEQLLR 1231
            ++ E G  E++  
Sbjct: 507  RIVEEGPTEKVFE 519

Length = 539

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score =  139 bits (351), Expect = 7e-37
 Identities = 80/218 (36%), Positives = 122/218 (55%), Gaps = 23/218 (10%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084
            +N++L+V  G    ++G +GSGKS ++  +  F  P SG +L++G DI   NL   +R I
Sbjct: 16   KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDI 73

Query: 1085 GLVQQEPALF-STTIYENIKYG----NEDASEIE--LMKATKAANAHGFISRMPEGYQSH 1137
              V Q  ALF   T+Y+NI YG      D  EIE  +++  +       ++R PE     
Sbjct: 74   SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE----- 128

Query: 1138 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRT 1195
                   LSGG++QRVAIARA++ NP ILLLDE  SALD  ++  ++E L K+ +  G T
Sbjct: 129  ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182

Query: 1196 TIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
             + V H        ADK+A++  GK+ ++G  E++ +K
Sbjct: 183  VLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score =  138 bits (351), Expect = 8e-37
 Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 26/234 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IEL NVS  Y         + ++L +  G    ++G SG GK+T++ L+  F  P SG +
Sbjct: 1    IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG------NEDASEIELMKAT 1118
            L+DG DI   NL   +R +  V Q  ALF   T++ENI +G       +   +  + +A 
Sbjct: 58   LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
                  G+ +R P            QLSGGQ+QRVAIARA++  P +LLLDE   ALD  
Sbjct: 116  DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164

Query: 1179 SENLIQEALDKL--MEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQL 1229
                +Q  L +L    G T + V H     +  +D+IAV+ +GK+ +IG+ E++
Sbjct: 165  LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  138 bits (350), Expect = 9e-37
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 17/224 (7%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           +IEF EV  +Y S    + ++++   + G  +  VGPSG+GKST+I ++ RL +PT G I
Sbjct: 3   EIEFKEV--SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 495
           L+DG D+K++ +  LR ++G+V Q+P LF  ++ +NI  G        +++  K  +   
Sbjct: 61  LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP-------MLKGEKNVDVEY 113

Query: 496 FVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
           ++   GL   Y T+       LSGG+ QR++IAR +  NP++LLLDE TSALD  S  I+
Sbjct: 114 YLSIVGLNKEYATR---DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170

Query: 554 QRALEKIMS--NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
           +  + K+ +  N T I + H +   + + D    L  G +VE  
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214

Length = 241

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  151 bits (383), Expect = 1e-36
 Identities = 150/545 (27%), Positives = 245/545 (44%), Gaps = 78/545 (14%)

Query: 101  LVYLGL-VALVSAWIGVAFWMQTGERQTA-RLRLKYLQSVLKKDMSFFDTEARDSNIIFH 158
            L+Y  L    V   +  ++W+       A RL    L S+L+  MSFF T      II  
Sbjct: 957  LIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPL-GRIINR 1015

Query: 159  ISSDAILVQDAIGDKTGHALRYLSQFFVGFA-VGFTSVWQLTLLTLAVVPLIAVAGGAYT 217
             + D   +   +       L  + Q    F  +G  S    T+   A++PL+ +  GAY 
Sbjct: 1016 FAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVS----TISLWAIMPLLVLFYGAYL 1071

Query: 218  ITMSTLSEKGEAAYGEAGKVAEEIISQVRA-VYAFVGEA----KAIESYSHSLKEALKQG 272
               ST  E             + + S  R+ VYA  GEA      I +Y    + A   G
Sbjct: 1072 YYQSTARE------------VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEING 1119

Query: 273  KK-------SGVAKGIGVGLTYGLLFCAWALLLWYAGIL--VRHGDTNGGKAFTTIINVI 323
            +        + V       L   L      L++W       +++G      AF + + ++
Sbjct: 1120 RSMDNNIRFTLVNMSSNRWLAIRLETLG-GLMIWLTASFAVMQNGRAENQAAFASTMGLL 1178

Query: 324  FSGFALG-----QAAPNLAAIAKGKAAAANIISIIKENS-HSSERPGDDGITLPK----- 372
             S +AL       A   LA++A              ENS ++ ER G   I LP      
Sbjct: 1179 LS-YALNITSLLTAVLRLASLA--------------ENSLNAVERVGT-YIDLPSEAPLV 1222

Query: 373  -----------LAGQIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKST 419
                        +G I+F +V   Y  RP +  V   L+F +   +    VG +G+GKS+
Sbjct: 1223 IENNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSS 1280

Query: 420  IISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA 479
            +++ + R+ E   G+IL+DG D+    L  LR+ +G++ Q P LF+ ++  N+    E  
Sbjct: 1281 MLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHN 1340

Query: 480  SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 539
              D + E+ + A+    +     G   +V E G   S GQ+Q +++ARA+LR  KIL+LD
Sbjct: 1341 DAD-LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399

Query: 540  EATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
            EAT+A+D  ++ ++Q+ + +   + T +++AHRL+T+ D D I+VL  G+VVE  T  +L
Sbjct: 1400 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENL 1459

Query: 600  ISKGG 604
            +S  G
Sbjct: 1460 LSNEG 1464

Length = 1622

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  137 bits (347), Expect = 2e-36
 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 13/225 (5%)

Query: 377 IEFSEVCFAYPS--RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           IE   V   Y          +++N  ++AG+  A VGPSGSGKST+++++  L +PTSG+
Sbjct: 2   IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 435 ILLDGHDLKSLQLKWL----REQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAK 489
           +L++G DL  L  K L    R+++G V Q   L    ++  N+ L    A          
Sbjct: 62  VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121

Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
           A      +       + +     ++LSGGQ+QR+AIARA++ NPKI+L DE T  LD+++
Sbjct: 122 AEELLEVLGLEDRLLKKKP----SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177

Query: 550 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 592
              V   L ++     +T I+V H     +  D ++ LK+G++ E
Sbjct: 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222

Length = 226

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  135 bits (342), Expect = 2e-36
 Identities = 56/217 (25%), Positives = 108/217 (49%), Gaps = 47/217 (21%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   +   Y  +     ++++ +V+ G+ +  +GP+G+GK+T+I ++  L +P SG+I 
Sbjct: 1   IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHS 495
           + G D+K    + ++ ++G + +EP+L+   ++  N+                       
Sbjct: 59  VLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL----------------------- 94

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
                             +LSGG KQR+A+A+A+L +P++L+LDE TS LD ES      
Sbjct: 95  ------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136

Query: 556 ALEKIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQV 590
            L ++     TI+++ H L     + D + +L NG++
Sbjct: 137 LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  150 bits (379), Expect = 2e-36
 Identities = 79/230 (34%), Positives = 134/230 (58%), Gaps = 1/230 (0%)

Query: 375  GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
            G++EF   C  Y     +V  ++N ++  G+    VG +G+GKS++   + R+ E   G+
Sbjct: 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342

Query: 435  ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 494
            I++DG ++  + L  LR ++ ++ Q+P LF+ S+  N L      S + V  A + A+  
Sbjct: 1343 IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN-LDPFSQYSDEEVWWALELAHLK 1401

Query: 495  SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
            +FV  LPD    +  EGG  LS GQ+Q + +ARA+LR  KIL+LDEAT+A+D E++ ++Q
Sbjct: 1402 TFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQ 1461

Query: 555  RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG 604
              +     + T + +AHRL+T+ D   ++VL  G+V E G   +L+ + G
Sbjct: 1462 STIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRG 1511

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  140 bits (355), Expect = 2e-36
 Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 38/252 (15%)

Query: 1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP---- 1060
            +E++N+S  +P     +   + ++ ++  G  L +VG+SGSGKS +   +M         
Sbjct: 2    LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61

Query: 1061 -ISGTVLIDGYDIRTLN---LRSLR-RKIGLVQQEP--AL-----FSTTIYENIKYGNED 1108
             + G +L DG D+ +L+   LR +R ++I ++ Q+P  +L         I E ++   + 
Sbjct: 62   IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121

Query: 1109 ASE-------IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 1161
             S+       IEL++     +    +   P            +LSGG +QRV IA A+  
Sbjct: 122  LSKKEAKERAIELLELVGIPDPERRLKSYP-----------HELSGGMRQRVMIAMALAL 170

Query: 1162 NPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQG 1218
            NP +L+ DE T+ALD   +  I + L +L    G   I++ H L  +   AD++AV+  G
Sbjct: 171  NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230

Query: 1219 KVAEIGSHEQLL 1230
            ++ E G  E++ 
Sbjct: 231  RIVEEGPVEEIF 242

Length = 316

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score =  137 bits (348), Expect = 3e-36
 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 24/227 (10%)

Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KS 444
              +N+N  +   +  A +GPSG GKST++  + R+ +        GK+L DG D+  K 
Sbjct: 15  EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74

Query: 445 LQLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA--KAANAHSF 496
           + +  LR ++G+V Q+P  F  SI +NI  G      K+   +D ++E +  KAA     
Sbjct: 75  IDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAA----- 129

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
              L D  + ++ +    LSGGQ+QR+ IARA+   P++LLLDE TSALD  +   ++  
Sbjct: 130 ---LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186

Query: 557 LEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
           ++++    T ++V H +     + D      +G++VE G    + + 
Sbjct: 187 IQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  138 bits (349), Expect = 3e-36
 Identities = 73/248 (29%), Positives = 130/248 (52%), Gaps = 24/248 (9%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I++ NVSF YP   +  + +N++ +++ G  +A++G +GSGKST+  ++     P SG +
Sbjct: 8    IKVENVSFSYPNSENNAL-KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE----DASEIE--LMKA 1117
             IDG  I   NL+ +R+KIG++ Q P       T+ ++I +G E       +++  +   
Sbjct: 67   KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
             K      ++ + P+            LSGGQKQRVAIA  +  NP I++ DE+TS LD 
Sbjct: 127  AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175

Query: 1178 ASENLIQEALDKLMEGR--TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1235
              +  I++ +  L + R  T I + H +     ADK+ V  +GK+   G  +++L  +  
Sbjct: 176  KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEI 235

Query: 1236 IYKQLIRL 1243
            +  +  ++
Sbjct: 236  L--EKAKI 241

Length = 271

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  137 bits (348), Expect = 3e-36
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 37/246 (15%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+ N++  Y  RP   + E+++L V  G   A++G +G+GKST++  ++    P SG +
Sbjct: 5    IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPAL---FSTTIYE------------NIKYGNEDAS 1110
             I G  +R    R  R +IG V Q+ ++   F  T+ +              +   +D  
Sbjct: 62   KIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
            +++  +A +         R        +G    +LSGGQKQRV +ARA+ +NP +LLLDE
Sbjct: 119  KVD--EALERVGMEDLRDR-------QIG----ELSGGQKQRVLLARALAQNPDLLLLDE 165

Query: 1171 ATSALDTASENLIQEALDKL-MEGRTTIMVAHRLST-IRNADKIAVLQQGKVAEIGSHEQ 1228
              + +D A +  I + L +L  EG+T +MV H L   +   D++  L +  +A  G  E+
Sbjct: 166  PFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEE 224

Query: 1229 LLRKEN 1234
            +L +EN
Sbjct: 225  VLTEEN 230

Length = 254

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  134 bits (341), Expect = 1e-35
 Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 18/225 (8%)

Query: 377 IEFSEVCFAYP--SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           IE   +   Y          + ++ S++ G+  A VGPSGSGKST+++++  L  PTSG+
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 435 ILLDGHDLKSLQLKWL----REQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAK 489
           + +DG D+  L  K L    R  +G V Q   L    +   N+ L      +  V +  +
Sbjct: 61  VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPKKER 117

Query: 490 AANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
              A   +E  GL D           +LSGGQ+QR+AIARA+  +PKI+L DE T  LD+
Sbjct: 118 RERAEELLERVGLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173

Query: 548 ESELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590
           E+   V   L ++   +  T +VV H        D I+ L++G++
Sbjct: 174 ETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score =  134 bits (340), Expect = 1e-35
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 26/227 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE++N+   +    D  + + ++L V  G  + ++G SGSGKST++  +    +P SGT+
Sbjct: 1    IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57

Query: 1066 LIDGYDI--RTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA-- 1120
            +IDG  +     N+  LR+K+G+V Q+  LF   T+ ENI         I++   +KA  
Sbjct: 58   IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA-----PIKVKGMSKAEA 112

Query: 1121 -ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
               A   + ++  G          QLSGGQ+QRVAIARA+  NP ++L DE TSALD   
Sbjct: 113  EERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP-- 168

Query: 1180 ENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220
              L+ E LD +M     EG T ++V H +   R  AD++  +  G++
Sbjct: 169  -ELVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  134 bits (341), Expect = 2e-35
 Identities = 76/251 (30%), Positives = 117/251 (46%), Gaps = 29/251 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+  VS  +     + + E++NL V  G  +A++G SG GKST++ L+     P SG V
Sbjct: 4    LEIEGVSKSFG---GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAH 1124
            L+DG       +      IG V QE AL    T+ +N+  G E        KA     A 
Sbjct: 61   LLDG-----RPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAK 112

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
              +  +  G          QLSGG +QRVAIARA+   P +LLLDE   ALD  +   +Q
Sbjct: 113  ELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ 170

Query: 1185 EALDKLME--GRTTIMVAHRLS-TIRNADKIAVL--QQGKVAEI----------GSHEQL 1229
            + L +L E   +T ++V H +   +  AD++ VL  + G++ E               + 
Sbjct: 171  DELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRIRGDPEF 230

Query: 1230 LRKENGIYKQL 1240
            L     + ++L
Sbjct: 231  LELREELLEEL 241

Length = 248

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  135 bits (342), Expect = 3e-35
 Identities = 74/248 (29%), Positives = 127/248 (51%), Gaps = 46/248 (18%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   V  ++  R   + + ++  V  G+  A +G SGSGKST++ ++  L  P  G+IL
Sbjct: 9   IEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66

Query: 437 LDGHDLKSL---QLKWLREQMGLVSQEPALF-ATSIANNI------LLGKEDASMDRV-- 484
           +DG D+  L   +L  +R++MG++ Q+ ALF + ++  N+           ++ +  +  
Sbjct: 67  IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126

Query: 485 --IEAA--KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
             +E    + A A  +    P            +LSGG ++R+A+ARA+  +P++L LDE
Sbjct: 127 MKLELVGLRGAAADLY----PS-----------ELSGGMRKRVALARAIALDPELLFLDE 171

Query: 541 ATSALDAES-----ELI--VQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVE 592
            TS LD  S     ELI  +  AL       T I+V H L ++  + D + VL +G+V+ 
Sbjct: 172 PTSGLDPISAGVIDELIRELNDAL-----GLTVIMVTHDLDSLLTIADRVAVLADGKVIA 226

Query: 593 SGTHVDLI 600
            GT  +L+
Sbjct: 227 EGTPEELL 234

Length = 263

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  142 bits (360), Expect = 3e-35
 Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 37/252 (14%)

Query: 1006 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP---- 1060
            +E+ N++ ++      +    +++ +V  G  L +VG+SGSGKST+   +M         
Sbjct: 6    LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65

Query: 1061 ISGTVLIDGYDIRTLN---LRSLR-RKIGLVQQEP-ALF--STTIYENI-----KYGNED 1108
             SG V++DG D+  L+   +R LR ++I ++ Q+P        TI + I      +G   
Sbjct: 66   TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125

Query: 1109 ASE-----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163
             +E     +EL++     +      R P     H      QLSGG +QRV IA A+   P
Sbjct: 126  RAEARKRAVELLEQVGLPDPER-RDRYP-----H------QLSGGMRQRVMIAMALALKP 173

Query: 1164 SILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220
             +L+ DE T+ALD  ++  I + L  L    G   + + H L  +   AD++ V+ +G++
Sbjct: 174  KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233

Query: 1221 AEIGSHEQLLRK 1232
             E G  E++L  
Sbjct: 234  VETGPTEEILSN 245

Length = 539

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  137 bits (347), Expect = 4e-35
 Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 41/242 (16%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           ++E   V  ++ S    V +++N  ++ G+    +GPSG GKST++ M+  L EPTSG+I
Sbjct: 3   ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLG-------KEDASMDRVIEA 487
           L+DG D+  L     R  + +V Q  AL+   ++  NI  G       K +    RV E 
Sbjct: 61  LIDGRDVTDLP-PEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEID-KRVKEV 117

Query: 488 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
           AK       +   P            QLSGGQ+QR+A+ARA++R PK+ LLDE  S LDA
Sbjct: 118 AKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166

Query: 548 ESE----LIVQRALEKIMSNRTTIVVAHR------LSTVRDVDTIMVLKNGQVVESGTHV 597
           +        +++  E++    TTI V H       L+     D I+V+ +G++ + GT +
Sbjct: 167 KLRVLMRSEIKKLHERL--GTTTIYVTHDQVEAMTLA-----DRIVVMNDGRIQQVGTPL 219

Query: 598 DL 599
           +L
Sbjct: 220 EL 221

Length = 338

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  141 bits (358), Expect = 4e-35
 Identities = 70/239 (29%), Positives = 117/239 (48%), Gaps = 37/239 (15%)

Query: 384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD-- 441
           F          ++++F +  G+T   VG SGSGKST+  ++  L  P+SG I+ DG D  
Sbjct: 297 FVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356

Query: 442 LKSLQLKWLREQMGLVSQEPALFAT-----SIANNILLGKEDASMDRVIEAAKAANAHSF 496
           L   +L+ LR ++ +V Q+P  +++     ++ + +    E   +      A+     + 
Sbjct: 357 LTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDIL---AEPLRIHGGGSGAER---RAR 408

Query: 497 VEGLPDGYQTQVGEGG-------TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
           V  L +     VG           +LSGGQ+QR+AIARA+   PK+L+LDE  SALD   
Sbjct: 409 VAELLE----LVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV-- 462

Query: 550 ELIVQRA----LEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
              VQ      L+ +      T + ++H L+ VR + D + V+ +G++VE G    +  
Sbjct: 463 --SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519

Length = 539

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score =  133 bits (336), Expect = 4e-35
 Identities = 72/215 (33%), Positives = 112/215 (52%), Gaps = 27/215 (12%)

Query: 390 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQL 447
              V + ++ +V  G+    +GPSGSGKST++  +  L EP SG I++DG  L      +
Sbjct: 12  DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71

Query: 448 KWLREQMGLVSQEPALFA-TSIANNILLG-----KEDASMDRVIEAAKAANAHSFVEGLP 501
             LR+++G+V Q+  LF   ++  NI L          +     EA + A       GL 
Sbjct: 72  NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA-----EAEERALELLEKVGLA 126

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-----ELIVQRA 556
           D    +      QLSGGQ+QR+AIARA+  NPK++L DE TSALD E      +++   A
Sbjct: 127 D----KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182

Query: 557 LEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQV 590
            E +    T +VV H +   R+V D ++ + +G++
Sbjct: 183 EEGM----TMVVVTHEMGFAREVADRVIFMDDGRI 213

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score =  133 bits (337), Expect = 4e-35
 Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 30/230 (13%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAF-VGPSGSGKSTIISMVQRLYEPTSGKI 435
           I F  V  AYP        +++F +  G+ F F  GPSG+GKST++ ++     PT GKI
Sbjct: 2   IRFENVSKAYP-GGREALRDVSFHIPKGE-FVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59

Query: 436 LLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILL-----GKEDASM-DRVI 485
           L++GHDL  L   ++ +LR Q+G+V Q+  L    ++  N+ L     GK    +  RV 
Sbjct: 60  LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
           E             LP            QLSGG++QR+AIARA++  P +LL DE T  L
Sbjct: 120 EVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168

Query: 546 DAESELIVQRALEKIMSNR--TTIVVA-HRLSTVRDVDT-IMVLKNGQVV 591
           D +    + R  E+I  NR  TT+++A H L  V  +   ++ L++G++V
Sbjct: 169 DPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216

Length = 223

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  137 bits (347), Expect = 8e-35
 Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 33/225 (14%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRR 1082
            + +L V  G    ++G SGSGKST++ L+ R  +P  G +L+DG DI  L+   LR LRR
Sbjct: 46   DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRR 105

Query: 1083 -KIGLVQQEPALFS-TTIYENIKYG------NEDASEIELMKATKAANAHGFISRMPEGY 1134
             KI +V Q  AL    T+ EN+ +G       +   E   ++A +     G+  + P   
Sbjct: 106  KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-- 163

Query: 1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI-QEALDKLME- 1192
                     +LSGG +QRV +ARA+  +P ILL+DEA SALD     LI  E  D+L+E 
Sbjct: 164  ---------ELSGGMQQRVGLARALANDPDILLMDEAFSALDP----LIRTEMQDELLEL 210

Query: 1193 ----GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
                 +T + + H L   +R  D+IA+++ G++ ++G+ E++L  
Sbjct: 211  QAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255

Length = 386

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  130 bits (328), Expect = 9e-35
 Identities = 70/215 (32%), Positives = 100/215 (46%), Gaps = 60/215 (27%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066
            E+ N+SF+Y  R      +N++L + AG  +A+VG +GSGKST++  +     P SG   
Sbjct: 1    EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE-- 55

Query: 1067 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF 1126
                                               I    +D +++ L +  +       
Sbjct: 56   -----------------------------------ILIDGKDIAKLPLEELRRR------ 74

Query: 1127 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1186
            I  +P            QLSGGQ+QRVA+ARA+L NP +LLLDE TS LD AS   + E 
Sbjct: 75   IGYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122

Query: 1187 LDKLM-EGRTTIMVAHRLSTIRNA-DKIAVLQQGK 1219
            L +L  EGRT I+V H       A D++ VL+ GK
Sbjct: 123  LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score =  132 bits (335), Expect = 1e-34
 Identities = 81/238 (34%), Positives = 129/238 (54%), Gaps = 21/238 (8%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   +   YP+      ++++ S++ G+  A +GPSG+GKST++  +  L EPTSG +L
Sbjct: 1   IEVENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59

Query: 437 LDGHDLKSLQLKWLRE---QMGLVSQEPALFA-TSIANNILLGKED--------ASMDRV 484
           +DG D+  L+ K LR+   Q+G++ Q+  L    S+  N+L G+            +   
Sbjct: 60  IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119

Query: 485 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544
            E  +A  A   V GL D    +      QLSGGQ+QR+AIARA+++ PK++L DE  ++
Sbjct: 120 EEKQRALAALERV-GLLDKAYQRAD----QLSGGQQQRVAIARALMQQPKLILADEPVAS 174

Query: 545 LDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599
           LD  S   V   L++I      T IV  H++   R+  D I+ LK+G++V  G   +L
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  132 bits (335), Expect = 2e-34
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 23/232 (9%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---- 432
           IE  ++   Y        +++N  +   K  A +GPSG GKST++  + R+ +       
Sbjct: 8   IEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65

Query: 433 -GKILLDGHDL--KSLQLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDR 483
            G++LLDG ++    + +  LR ++G+V Q+P  F  SI +N+  G      K+    + 
Sbjct: 66  EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEI 125

Query: 484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
           V  + K A        L D  + ++ +    LSGGQ+QR+ IARA+   P++LL+DE TS
Sbjct: 126 VESSLKKA-------ALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178

Query: 544 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
           ALD  S L ++  + ++    T ++V H +     V D       G++VE G
Sbjct: 179 ALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230

Length = 253

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score =  136 bits (343), Expect = 2e-34
 Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 25/220 (11%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRR 1082
            + +L ++ G    ++G SGSGKST + ++ R  +P +G + IDG +I   +   LR +RR
Sbjct: 11   DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70

Query: 1083 -KIGLVQQEPALFS-TTIYENIKYG------NEDASEIELMKATKAANAHGFISRMPEGY 1134
             KIG+V Q+ ALF   TI +N   G       E   + + ++  K      +  R P+  
Sbjct: 71   KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD-- 128

Query: 1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-- 1192
                     +LSGG +QRV +ARA+   P ILL+DEA SALD    + +Q+ L KL    
Sbjct: 129  ---------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179

Query: 1193 GRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLR 1231
             +T + + H L   IR  D+I +++ G++ ++G+ +++LR
Sbjct: 180  QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score =  130 bits (329), Expect = 3e-34
 Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 26/217 (11%)

Query: 1008 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067
            L+N+S K+    D  I ++LNL +  G+  A++G+SGSGKST+++++       SG V +
Sbjct: 1    LKNISKKFG---DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57

Query: 1068 DGYDIRTLNL---RSLRR-KIGLVQQEPALFST-TIYENI----KYGNEDASE-IELMK- 1116
            +G +   LN       RR K+G + Q  AL    T+ EN+    KY      E  E  K 
Sbjct: 58   NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE 117

Query: 1117 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
            A +    +  + +              +LSGG++QRVA+ARAILK P ++L DE T +LD
Sbjct: 118  ALEKVGLNLKLKQKI-----------YELSGGEQQRVALARAILKPPPLILADEPTGSLD 166

Query: 1177 TASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKI 1212
              + + + + L +L  EG+T I+V H     + AD++
Sbjct: 167  PKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRV 203

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score =  130 bits (330), Expect = 3e-34
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 17/223 (7%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE  NV+  YP        + +N+ +SAG  + +VG SG+GKST++ L+ +   P SGT+
Sbjct: 1    IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58

Query: 1066 LIDGYDIRTLNLRS---LRRKIGLVQQEPALFST-TIYENIKYGNE--DASEIELMKATK 1119
             ++G D+  L  R+   LRRKIG+V Q+  L     +YEN+ +  E       E+ K   
Sbjct: 59   RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
            AA     +  +  G          +LSGG++QRVAIARAI+ +P+IL+ DE T  LD  +
Sbjct: 119  AA-----LELV--GLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171

Query: 1180 ENLIQEALDKLMEGRTTIMVAHRLSTIRNADK--IAVLQQGKV 1220
               I   L K+ +  TT++VA     + +  +  +  L++GK+
Sbjct: 172  TWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  131 bits (333), Expect = 4e-34
 Identities = 78/256 (30%), Positives = 128/256 (50%), Gaps = 27/256 (10%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
             IE++N+S  YP        +++NL+++ G  +A++G SG+GKST++  +    DP SG 
Sbjct: 3    MIEVKNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60

Query: 1065 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA 1120
            +L +G  I  L    LR LRR IG++ Q+  L    ++ EN+  G        L   +  
Sbjct: 61   ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG-------RLGYTSTW 113

Query: 1121 ANAHGFISRMPE----------GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
             +  G  S+  +          G       R   LSGGQ+QRVAIARA+++ P I+L DE
Sbjct: 114  RSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE 173

Query: 1171 ATSALDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1227
              ++LD  S   + + L  +   +G T I+  H++   +  AD+I  L+ G++   G   
Sbjct: 174  PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPAS 233

Query: 1228 QLLRKE-NGIYKQLIR 1242
            +L  +  + IY   I 
Sbjct: 234  ELTDEALDEIYGNEIS 249

Length = 258

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score =  130 bits (330), Expect = 7e-34
 Identities = 78/242 (32%), Positives = 120/242 (49%), Gaps = 19/242 (7%)

Query: 1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD--- 1059
             G I ++++   Y    D    + +NL +   +  A++G SG GKST +  + R  D   
Sbjct: 1    MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57

Query: 1060 --PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 1115
               I G VL+DG DI    +++  LR+++G+V Q+P  F  +IY+N+ YG         +
Sbjct: 58   SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG----PRTHGI 113

Query: 1116 KATKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
            K  K  +     S         V DR     + LSGGQ+QR+ IARA+   P +LL+DE 
Sbjct: 114  KDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEP 173

Query: 1172 TSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLL 1230
            TSALD  S   I+E + +L +  T ++V H +    R +DK A    G++ E G    L 
Sbjct: 174  TSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233

Query: 1231 RK 1232
              
Sbjct: 234  TN 235

Length = 250

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score =  131 bits (331), Expect = 9e-34
 Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 53/236 (22%)

Query: 1006 IELRNVSFKYPVR------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 1059
            +E++N+   +PV         +   + ++  +  G +L +VG+SG GKST+  L++   +
Sbjct: 5    LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64

Query: 1060 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 1119
            P SG +L +G DI  L+    R ++                           +EL++   
Sbjct: 65   PTSGEILFEGKDITKLSKEERRERV---------------------------LELLEKVG 97

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
                   + R P     H      +LSGGQ+QR+ IARA+  NP +++ DE  SALD + 
Sbjct: 98   LPEEF--LYRYP-----H------ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144

Query: 1180 E----NLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
            +    NL+++  ++L  G T + ++H LS +R  +D+IAV+  GK+ EIG  E++ 
Sbjct: 145  QAQILNLLKDLQEEL--GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198

Length = 268

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  130 bits (328), Expect = 1e-33
 Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 23/233 (9%)

Query: 381 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 440
            + +           N++  ++ G+T   VG SGSGKST+  ++  L +P+SG ILLDG 
Sbjct: 10  SIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK 69

Query: 441 DLKSLQ-LKWLREQMGLVSQEPAL-------FATSIANNILLGKEDASMDRVIEAAKAAN 492
            L   +  K     + +V Q+P             ++  +       S  R+ E      
Sbjct: 70  PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVG 129

Query: 493 AH-SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
              SF++  P            +LSGGQ+QRIAIARA++  PK+L+LDE TSALD   + 
Sbjct: 130 LPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178

Query: 552 IVQRALEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
            +   L ++   R  T + ++H L+ V  + D I V+ NGQ+VE G   +L+S
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231

Length = 252

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score =  129 bits (327), Expect = 1e-33
 Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 28/234 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+ N+S  YP        ++++L ++ G  +A++G SG+GKST++  +    +P SG+V
Sbjct: 1    IEVENLSKTYP--NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58

Query: 1066 LIDGYDIRTL---NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDA-----------S 1110
            LIDG DI  L    LR LRR+IG++ Q+  L    ++ EN+  G                
Sbjct: 59   LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
            + E  +A  A    G + +    YQ     R  QLSGGQ+QRVAIARA+++ P ++L DE
Sbjct: 119  KEEKQRALAALERVGLLDKA---YQ-----RADQLSGGQQQRVAIARALMQQPKLILADE 170

Query: 1171 ATSALDTASENLIQEALDKL--MEGRTTIMVAHRLSTIR-NADKIAVLQQGKVA 1221
              ++LD AS   + + L ++   EG T I+  H++   R  AD+I  L+ G++ 
Sbjct: 171  PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  130 bits (329), Expect = 1e-33
 Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 19/237 (8%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   +   YP   H   +++N  ++ G+  A +GPSG+GKST++  +  L +PTSG+IL
Sbjct: 4   IEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62

Query: 437 LDGHD---LKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKED-----ASMDRVIEA 487
            +G     LK  +L+ LR  +G++ Q+  L    S+  N+LLG+        S+  +   
Sbjct: 63  FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122

Query: 488 AKAANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
              A A   +E  G+ D    +       LSGGQ+QR+AIARA+++ PKI+L DE  ++L
Sbjct: 123 EDKAQALDALERVGILDKAYQRAS----TLSGGQQQRVAIARALVQQPKIILADEPVASL 178

Query: 546 DAESELIVQRALEKIMSNR--TTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599
           D ES   V   L+ I      T IV  H++   +   D I+ LK G++V  G   +L
Sbjct: 179 DPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235

Length = 258

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  132 bits (333), Expect = 3e-33
 Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 31/245 (12%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            +I + NV  ++         ++++L + +G  +A++G SG+GKST++ ++     P +G 
Sbjct: 2    SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58

Query: 1065 VLIDGYDIRTL-NLRSLRRKIGLVQQEPALF-STTIYENIKYG----NEDASEIELMKAT 1118
            + ++G  +  + NL    RK+G V Q  ALF   T+ +NI +G     E  SE E+    
Sbjct: 59   IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEI--RA 116

Query: 1119 KAA------NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1172
            +           G   R P            QLSGGQ+QRVA+ARA+   P +LLLDE  
Sbjct: 117  RVEELLRLVQLEGLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPF 165

Query: 1173 SALDTASENLIQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQL 1229
             ALD      ++  L KL +  G TT+ V H     +  AD++ VL QG++ ++G  +++
Sbjct: 166  GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225

Query: 1230 LRKEN 1234
                 
Sbjct: 226  YDHPA 230

Length = 345

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  127 bits (322), Expect = 3e-33
 Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 34/230 (14%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066
            E+ +++  Y   P   + E+++ +V  G  LA+VG +G+GKST++  ++    P SG++ 
Sbjct: 1    EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57

Query: 1067 IDGYDIRTLNLRSLRRKIGLV-QQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
            + G  +        R++IG V Q+        I            ++ LM          
Sbjct: 58   VFGKPLE-----KERKRIGYVPQRRSIDRDFPI---------SVRDVVLMGLYGHKGLFR 103

Query: 1126 FISRMPEGYQ-----------SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATS 1173
             +S+                 S + DR + +LSGGQ+QRV +ARA++++P +LLLDE  +
Sbjct: 104  RLSK--ADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161

Query: 1174 ALDTASENLIQEALDKL-MEGRTTIMVAHRLSTI-RNADKIAVLQQGKVA 1221
             +D  ++  I E L +L  EG T ++V H L  +    D++ +L +  VA
Sbjct: 162  GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVA 211

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  129 bits (326), Expect = 4e-33
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 29/233 (12%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I+   V F+YP+  +   +N++F ++ G+  A +G +GSGKSTI  ++  L +P SG+I 
Sbjct: 8   IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDR------VIEAA 488
           +DG  +    LK +R+++G++ Q P       ++ ++I  G E+  +        + + A
Sbjct: 68  IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLA 127

Query: 489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
           K      +++  P             LSGGQKQR+AIA  +  NP+I++ DE+TS LD +
Sbjct: 128 KKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176

Query: 549 SELIVQRALEKIMS------NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595
                +R ++KIM        +T I + H +      D ++V   G+++  G 
Sbjct: 177 G----KREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGK 225

Length = 271

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score =  127 bits (321), Expect = 4e-33
 Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 24/228 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +EL NV+ ++    ++T  ++LNL ++ G  + ++G SG GK+T + ++    +P SG +
Sbjct: 1    VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYG----NEDASEIELMKATKA 1120
             I G D+   +L    R I +V Q  AL+   T+Y+NI +G         EI+  +  + 
Sbjct: 58   YIGGRDVT--DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEID-ERVREV 114

Query: 1121 ANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
            A               H+ DR   QLSGGQ+QRVA+ RAI++ P + L+DE  S LD   
Sbjct: 115  AELLQI---------EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165

Query: 1180 ENLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIG 1224
               ++  L +L +  G TTI V H ++  +  AD+IAV+  G++ +IG
Sbjct: 166  RVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score =  131 bits (331), Expect = 5e-33
 Identities = 87/243 (35%), Positives = 126/243 (51%), Gaps = 44/243 (18%)

Query: 377 IEFSEV--CFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           IE   +   F    R      N++  + AG+ F  +G SG+GKST+I  +  L  PTSG+
Sbjct: 2   IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61

Query: 435 ILLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMD------RV 484
           +L+DG DL +L   +L+  R Q+G++ Q   L ++ ++ +N+ L  E A         RV
Sbjct: 62  VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121

Query: 485 IE-------AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 537
            E       + KA           D Y         QLSGGQKQR+AIARA+  NPK+LL
Sbjct: 122 TELLELVGLSDKA-----------DRYP-------AQLSGGQKQRVAIARALASNPKVLL 163

Query: 538 LDEATSALDAESELIVQRALEKIMSNRT---TIV-VAHRLSTVRDV-DTIMVLKNGQVVE 592
            DEATSALD  +   +   L+ I  NR    TIV + H +  V+ + D + V+  G++VE
Sbjct: 164 CDEATSALDPATTRSILELLKDI--NRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221

Query: 593 SGT 595
            GT
Sbjct: 222 QGT 224

Length = 343

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  132 bits (333), Expect = 5e-33
 Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 23/213 (10%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--- 452
           + +  V+ G+ F  +G SGSGKST++ ++ RL EPT G+IL+DG D+  L    LRE   
Sbjct: 46  DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRR 105

Query: 453 -QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 510
            ++ +V Q  AL    ++  N+  G E   + +     +A  A   V GL +GY  +   
Sbjct: 106 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV-GL-EGYADKY-- 161

Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ESELI-VQRALEKIMSN 563
              +LSGG +QR+ +ARA+  +P ILL+DEA SALD       + EL+ +Q  L+K    
Sbjct: 162 -PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK---- 216

Query: 564 RTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGT 595
            T + + H L   +R  D I ++K+G++V+ GT
Sbjct: 217 -TIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248

Length = 386

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score =  131 bits (331), Expect = 6e-33
 Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 25/214 (11%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--- 452
           + + ++  G+ F  +G SGSGKST + M+ RL EPT+G+I +DG ++       LRE   
Sbjct: 11  DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70

Query: 453 -QMGLVSQEPALFA-TSIANNILLGKEDASMD------RVIEAAKAANAHSFVEGLPDGY 504
            ++G+V Q+ ALF   +I  N  LG E           + +E  K      +    PD  
Sbjct: 71  KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD-- 128

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN- 563
                    +LSGG +QR+ +ARA+   P ILL+DEA SALD      +Q  L+K+ +  
Sbjct: 129 ---------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179

Query: 564 -RTTIVVAHRL-STVRDVDTIMVLKNGQVVESGT 595
            +T + + H L   +R  D I+++K G++V+ GT
Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGT 213

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  129 bits (325), Expect = 8e-33
 Identities = 81/244 (33%), Positives = 131/244 (53%), Gaps = 30/244 (12%)

Query: 1006 IELRNVSFKY-PVRPDITIFE-----NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 1059
            I++ N++  Y    P    FE     N+N+++  G  + ++G +GSGKST+I  +     
Sbjct: 3    IKIENLTHIYMEGTP----FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK 58

Query: 1060 PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG----NEDASE 1111
            P SG ++IDG DI  + + L  +R+K+GLV Q P   LF  TI ++I +G         E
Sbjct: 59   PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEE 118

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDRG-VQLSGGQKQRVAIARAILKNPSILLLDE 1170
            IE  +  +A N  G +    E Y+    D+   +LSGGQK+RVAIA  +   P IL+LDE
Sbjct: 119  IE-NRVKRAMNIVG-LDY--EDYK----DKSPFELSGGQKRRVAIAGVVAMEPKILILDE 170

Query: 1171 ATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHE 1227
             T+ LD    + I   + +L +    T I+V+H +  + + AD+I V+ +GK    G+  
Sbjct: 171  PTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230

Query: 1228 QLLR 1231
            ++ +
Sbjct: 231  EVFK 234

Length = 287

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  126 bits (319), Expect = 2e-32
 Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 27/243 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---- 1061
            IE+ N S  Y    +    +N+ +K+   +  A++G SG GK+T++  + R  D I    
Sbjct: 4    IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60

Query: 1062 -SGTVLIDGYDIR--TLNLRSLRRKIGLVQQEPALFSTTIYENIKYG--------NEDAS 1110
              G +   G DI    L++   R+K+G+V Q+P  F  +IY+N+ +G             
Sbjct: 61   VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
             I      KAA        + +  +S +   G +LSGGQ+QR+ IARA+   P ++LLDE
Sbjct: 121  RIVEESLKKAA--------LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172

Query: 1171 ATSALDTASENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQL 1229
             TSALD  +   I++ L++L E  T ++V H +   IR AD IA + +G++ E G   ++
Sbjct: 173  PTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232

Query: 1230 LRK 1232
            + +
Sbjct: 233  VER 235

Length = 250

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  124 bits (314), Expect = 2e-32
 Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 46/225 (20%)

Query: 1006 IELRNVSFKYPVRPDI---TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDP 1060
            +  RN++      P      + +N++ K   G   A++G SG+GKST+++ +   R    
Sbjct: 4    LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63

Query: 1061 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATK 1119
            +SG VLI+G  +     RS R+ IG V Q+  L  T T+ E + +               
Sbjct: 64   VSGEVLINGRPLD---KRSFRKIIGYVPQDDILHPTLTVRETLMF--------------- 105

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
            AA   G                   LSGG+++RV+IA  ++ NPS+L LDE TS LD++S
Sbjct: 106  AAKLRG-------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146

Query: 1180 ENLIQEALDKLM-EGRTTIMVAHRLST--IRNADKIAVLQQGKVA 1221
               +   L +L   GRT I   H+ S+      DK+ +L QG+V 
Sbjct: 147  ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score =  129 bits (327), Expect = 3e-32
 Identities = 80/241 (33%), Positives = 128/241 (53%), Gaps = 26/241 (10%)

Query: 995  ASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV 1054
             +K+ + +   +ELR +S  +       +  NL+L ++ G  L ++G SG GK+TV+ L+
Sbjct: 4    LNKQPSSLSPLVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLI 60

Query: 1055 MRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG----NEDA 1109
              F  P SG +++DG DI   ++ +  R +  V Q  ALF   T++EN+ +G       A
Sbjct: 61   AGFETPDSGRIMLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA 118

Query: 1110 SEIE--LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 1167
            +EI   +M+A +      F  R P            QLSGGQ+QRVAIARA++  P +LL
Sbjct: 119  AEITPRVMEALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLL 167

Query: 1168 LDEATSALDTASENLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIG 1224
            LDE+ SALD      +Q  L  L    G T + V H +   +  +D+I V++ G++ + G
Sbjct: 168  LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227

Query: 1225 S 1225
            +
Sbjct: 228  T 228

Length = 375

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score =  128 bits (323), Expect = 4e-32
 Identities = 72/201 (35%), Positives = 114/201 (56%), Gaps = 23/201 (11%)

Query: 1039 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TT 1097
            ++G SG GK+T++ L+  F  P SG++++DG D+   N+    R I +V Q  ALF   T
Sbjct: 1    LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58

Query: 1098 IYENIKYG----NEDASEIE--LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151
            + EN+ +G        +EI+  +++A +      F  R P            QLSGGQ+Q
Sbjct: 59   VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107

Query: 1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLS-TIRN 1208
            RVA+ARA++  P ILLLDE  SALD    + +Q  L  + E  G T + V H     +  
Sbjct: 108  RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167

Query: 1209 ADKIAVLQQGKVAEIGSHEQL 1229
            +D+IA++++GK+A+IG+ E++
Sbjct: 168  SDRIAIMRKGKIAQIGTPEEI 188

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score =  125 bits (315), Expect = 4e-32
 Identities = 83/232 (35%), Positives = 127/232 (54%), Gaps = 18/232 (7%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+ N+S ++         +++NL+V  G  +A++G SGSGKST++ ++     P SG +
Sbjct: 1    IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAH 1124
             ++G D   ++ R   RKIG V Q  ALF   T+ +NI +G      +E+ K  KA    
Sbjct: 58   RLNGQDATRVHAR--DRKIGFVFQHYALFKHLTVRDNIAFG------LEIRKHPKAK-IK 108

Query: 1125 GFISRMPEGYQ-SHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
              +  + E  Q   +GDR   QLSGGQ+QRVA+ARA+   P +LLLDE   ALD      
Sbjct: 109  ARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKE 168

Query: 1183 IQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLR 1231
            ++  L KL +    TT+ V H     +  AD+I V+  GK+ +IGS +++  
Sbjct: 169  LRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score =  125 bits (316), Expect = 6e-32
 Identities = 85/259 (32%), Positives = 129/259 (49%), Gaps = 35/259 (13%)

Query: 994  PASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISL 1053
                 V      I++RN++F Y         +N+NL ++  +  A +G SG GKST++  
Sbjct: 2    AMMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58

Query: 1054 VMRFYD--P---ISGTVLIDGYDIRT--LNLRSLRRKIGLVQQEPALFSTTIYENIKYG- 1105
              R Y+  P     G +L+DG +I T   ++  LR K+G+V Q+P  F  +IY+NI +G 
Sbjct: 59   FNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGV 118

Query: 1106 --NEDASEIEL----MKA-TKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVA 1154
               E  S  E+      A TKAA              + V D+    G  LSGGQ+QR+ 
Sbjct: 119  RLFEKLSRAEMDERVEWALTKAA------------LWNEVKDKLHQSGYSLSGGQQQRLC 166

Query: 1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIA 1213
            IAR I   P +LLLDE  SALD  S   I+E + +L +  T ++V H +    R +D  A
Sbjct: 167  IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTA 226

Query: 1214 VLQQGKVAEIGSHEQLLRK 1232
             +  G++ E G+ + +  K
Sbjct: 227  FMYLGELIEFGNTDTIFTK 245

Length = 260

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  123 bits (312), Expect = 7e-32
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 22/226 (9%)

Query: 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 437
           E  ++  +Y   P  V E+++F V  G+  A VGP+G+GKST++  +  L +PTSG I +
Sbjct: 1   EVEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58

Query: 438 DGHDLKSLQLKWLREQMGLVSQEPAL---FATSIANNILLG----KEDASMDRVIEAAKA 490
            G   K L+ +  R  +G V Q  ++   F  S+ + +L+G    K         + AK 
Sbjct: 59  FG---KPLEKERKR--IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113

Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
             A   V GL +    Q+GE    LSGGQ+QR+ +ARA++++P +LLLDE  + +D +++
Sbjct: 114 DEALERV-GLSELADRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQ 168

Query: 551 LIVQRALEKI-MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594
             +   L ++     T +VV H L  V +  D +++L N  VV SG
Sbjct: 169 EDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score =  123 bits (312), Expect = 8e-32
 Identities = 71/236 (30%), Positives = 112/236 (47%), Gaps = 29/236 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I   NVS  YP   +     +++  +  G  + + G SG+GKST++ L+     P  G +
Sbjct: 2    IRFENVSKAYPGGREA--LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59

Query: 1066 LIDGYDIRTLNLRS---LRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAA 1121
            L++G+D+  L  R    LRR+IG+V Q+  L    T+YEN+         +      +  
Sbjct: 60   LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL----PLRVIGKPPREIR 115

Query: 1122 NAHGFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
                   R+ E     G +        QLSGG++QRVAIARAI+  P++LL DE T  LD
Sbjct: 116  ------RRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169

Query: 1177 --TASE--NLIQEALDKLMEGRTTIMVAHRLSTIRNADK-IAVLQQGKVAEIGSHE 1227
               + E   L +E +++L  G T +M  H L  +      +  L+ G++    S  
Sbjct: 170  PDLSWEIMRLFEE-INRL--GTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRG 222

Length = 223

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  123 bits (311), Expect = 1e-31
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 19/227 (8%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +++RN++  Y       + ++L+L V  G    ++G +G+GK+T + ++     P SGT 
Sbjct: 1    LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKY-----GNEDASEIELMKATK 1119
             I+GY IRT + ++ R+ +G   Q  ALF   T+ E++++     G        L K+  
Sbjct: 60   YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG--------LPKSEI 110

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
                   +  +  G       R   LSGG K+++++A A++  PS+LLLDE TS LD AS
Sbjct: 111  KEEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168

Query: 1180 ENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225
               I + + ++ +GR+ I+  H +       D+IA++  GK+  IGS
Sbjct: 169  RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  125 bits (316), Expect = 1e-31
 Identities = 79/240 (32%), Positives = 123/240 (51%), Gaps = 22/240 (9%)

Query: 377 IEFSEVCFAY-PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           IE   + F Y   +      +++F V  G+  + +G +GSGKST + ++  L E  SG+I
Sbjct: 5   IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMD------RVIEA 487
           ++DG  L    +  +R ++G+V Q P       ++ +++  G E+  +       RV EA
Sbjct: 65  IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124

Query: 488 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
            +      F E  P            +LSGGQKQR+AIA AV   PKI++LDEATS LD 
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173

Query: 548 ESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE 605
           E  L + + ++ I      T I + H L  V   D ++V+KNGQV  + T  +L S+G +
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGND 233

Length = 279

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score =  124 bits (313), Expect = 2e-31
 Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 61/225 (27%)

Query: 389 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL--- 445
           R     + ++FS+  G+T   VG SG GKST+  ++  L EPTSG+IL +G D+  L   
Sbjct: 24  RYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKE 83

Query: 446 -QLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
            + + + E +  V                 G  +  + R          H          
Sbjct: 84  ERRERVLELLEKV-----------------GLPEEFLYR--------YPH---------- 108

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ-------RAL 557
                    +LSGGQ+QRI IARA+  NPK+++ DE  SALD      VQ       + L
Sbjct: 109 ---------ELSGGQRQRIGIARALALNPKLIVADEPVSALDV----SVQAQILNLLKDL 155

Query: 558 EKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
           ++ +   T + ++H LS VR + D I V+  G++VE G   ++ S
Sbjct: 156 QEELGL-TYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199

Length = 268

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score =  122 bits (309), Expect = 2e-31
 Identities = 81/238 (34%), Positives = 120/238 (50%), Gaps = 34/238 (14%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + L +V F Y   P        +L V AG  +A++G SG+GKST+++L+  F  P SG +
Sbjct: 2    LALDDVRFSYGHLP----MR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNE-----DASEIELMKATK 1119
            LI+G D          R + ++ QE  LF+  T+ +NI  G       +A + E ++A  
Sbjct: 57   LINGVDHTASP--PAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114

Query: 1120 AA-NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            A     GF+ R+P            +LSGGQ+QRVA+AR +++   ILLLDE  SALD A
Sbjct: 115  AQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163

Query: 1179 SENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
               L  E L  +         T +MV H        AD++  L  G++A  GS ++LL
Sbjct: 164  ---LRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218

Length = 231

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score =  122 bits (308), Expect = 4e-31
 Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 23/218 (10%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           +N++  V+ G  F  +GP+GSGKS ++  +    +P SGKILL+G D+ +L  +  +  +
Sbjct: 16  KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDI 73

Query: 455 GLVSQEPALFA-TSIANNILLG----KEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQ 507
             V Q  ALF   ++  NI  G    K D      +V+E A+       +   P      
Sbjct: 74  SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP------ 127

Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--T 565
                  LSGG++QR+AIARA++ NPKILLLDE  SALD  ++  ++  L+KI      T
Sbjct: 128 -----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182

Query: 566 TIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
            + V H       + D + ++ NG++++ G   ++  K
Sbjct: 183 VLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score =  122 bits (308), Expect = 5e-31
 Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 19/214 (8%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
           +++FSV  G+    +GP+G+GK+T+ +++     PTSG +L DG D+  L       ++G
Sbjct: 18  DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIARLG 76

Query: 456 LVS--QEPALFAT-SIANNILLG-----KEDASMDRVIEAAKAAN--AHSFVE--GLPDG 503
           +    Q P LF   ++  N+++           + R     + A   A   +E  GL D 
Sbjct: 77  IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRALEKIMS 562
                GE    LS GQ++R+ IARA+  +PK+LLLDE  + L   E+E + +   E    
Sbjct: 137 ADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192

Query: 563 NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
             T ++V H +  V  + D + VL  G+V+  GT
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score =  121 bits (306), Expect = 7e-31
 Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 17/229 (7%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   V   Y        + ++  +  G+ F  +GPSG GK+T++ ++     PTSG+IL
Sbjct: 1   IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHS 495
           LDG D+    L   +  +  V Q  ALF   ++  NI  G     + +     + A A  
Sbjct: 59  LDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116

Query: 496 FV--EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
            V  EG  +   +Q       LSGGQ+QR+AIARA++  PK+LLLDE   ALD +    +
Sbjct: 117 LVQLEGYANRKPSQ-------LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM 169

Query: 554 QRALEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 599
           Q  L+++      T + V H       + D I V+  G++ + GT  ++
Sbjct: 170 QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  123 bits (310), Expect = 7e-31
 Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 28/217 (12%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQLKWLRE 452
           +N+N  ++ G+    +G +GSGKST+I  +  L +PTSGKI++DG D+  K ++L  +R+
Sbjct: 24  DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK 83

Query: 453 QMGLVSQEP--ALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDGY 504
           ++GLV Q P   LF  +I  +I  G       E+   +RV  A           GL   Y
Sbjct: 84  KVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIV-------GLD--Y 134

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-- 562
           +    +   +LSGGQK+R+AIA  V   PKIL+LDE T+ LD +        L KI    
Sbjct: 135 EDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR---DEILNKIKELH 191

Query: 563 ---NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGT 595
              N T I+V+H +  V +  D I+V+  G+    GT
Sbjct: 192 KEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228

Length = 287

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  121 bits (306), Expect = 8e-31
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 24/226 (10%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSL 445
             +N+   +   +  A +GPSG GK+T++  + R+ +        GKI   G D+    L
Sbjct: 18  AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77

Query: 446 QLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA--KAANAHSFV 497
            +   R+++G+V Q+P  F  SI +N+  G      K    +DR++E +  KAA      
Sbjct: 78  DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAA------ 131

Query: 498 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 557
             L D  ++++ + GT+LSGGQ+QR+ IARA+   P+++LLDE TSALD  +   +++ L
Sbjct: 132 --LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLL 189

Query: 558 EKIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLISK 602
           E++  N T ++V H +   +R  D I  +  G+++E G   +++ +
Sbjct: 190 EELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235

Length = 250

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score =  124 bits (313), Expect = 9e-31
 Identities = 90/241 (37%), Positives = 132/241 (54%), Gaps = 27/241 (11%)

Query: 1006 IELRNVSFKYPV-RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I+L N++  +      I    N++L V AG+   V+G SG+GKST+I  V     P SG+
Sbjct: 2    IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61

Query: 1065 VLIDGYDIRTL---NLRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEIELMK 1116
            V++DG D+ TL    L   RR+IG++ Q   L S+ T++ N+    +  N    EI+  K
Sbjct: 62   VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIK-RK 120

Query: 1117 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
             T+     G +    + Y S+       LSGGQKQRVAIARA+  NP +LL DEATSALD
Sbjct: 121  VTELLALVG-LGDKHDSYPSN-------LSGGQKQRVAIARALASNPKVLLCDEATSALD 172

Query: 1177 TASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVL------QQGKVAEIGSHE 1227
             A+   I E L ++    G T +++ H +  + R  D +AV+      +QG V+EI SH 
Sbjct: 173  PATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHP 232

Query: 1228 Q 1228
            +
Sbjct: 233  K 233

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score =  121 bits (305), Expect = 1e-30
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 22/222 (9%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSLQLK 448
            +N  ++  +  A +GPSG GKST +  + R+ +        G++LLDG D+    + + 
Sbjct: 21  KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80

Query: 449 WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA-KAANAHSFVEGLP 501
            LR+++G+V Q+P  F  SI +N+  G      K+   +D ++E + K A        L 
Sbjct: 81  QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA-------ALW 133

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
           D  + ++ +    LSGGQ+QR+ IARA+   P++LL+DE TSALD  S L ++  ++++ 
Sbjct: 134 DEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK 193

Query: 562 SNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGTHVDLISK 602
            + T ++V H +    R  D      NG++VE G  VDL + 
Sbjct: 194 KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235

Length = 250

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  124 bits (313), Expect = 1e-30
 Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 20/233 (8%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
            I  + V   + +      ++++  + +G+  A +GPSG+GKST++ ++  L  P +G+I
Sbjct: 2   SIRINNVKKRFGAFG--ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59

Query: 436 LLDGHDLKSLQLKWLRE-QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANA 493
            L+G  L  +    +R+ ++G V Q  ALF   ++A+NI  G +    +R  EA   A  
Sbjct: 60  RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK-VRKERPSEAEIRARV 118

Query: 494 HSFV-----EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
              +     EGL D Y  Q       LSGGQ+QR+A+ARA+   PK+LLLDE   ALDA+
Sbjct: 119 EELLRLVQLEGLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171

Query: 549 SELIVQRALEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVD 598
               ++R L K+      TT+ V H      ++ D ++VL  G++ + G   +
Sbjct: 172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224

Length = 345

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  122 bits (308), Expect = 1e-30
 Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 23/240 (9%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE++N++FKY    +     +++  V  G  L+++G +GSGKST + L+    +  SG +
Sbjct: 5    IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNEDAS-EIELMK-----A 1117
            +IDG  +   N+  +R KIG+V Q P       T+ +++ +G E+     E MK     A
Sbjct: 65   IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
             +      F  R P            +LSGGQKQRVAIA A+   P I++LDEATS LD 
Sbjct: 125  LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173

Query: 1178 ASE-NLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
                 LI+  +  + +    T I + H L  +  +D++ V++ G+V    +  +L  + N
Sbjct: 174  EGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232

Length = 279

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score =  121 bits (305), Expect = 1e-30
 Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 21/235 (8%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
            +E   +   YP+      +N+N +++ G+  A +GPSG+GKST++  + RL EP+SG I
Sbjct: 1   MLEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59

Query: 436 LLDGHDLKSLQ---LKWLREQMGLVSQEPALFA-TSIANNILLGKEDA-SMDRVI----- 485
           LL+G D+  L+   L+ LR ++G++ Q   L    ++  N+L G+       R +     
Sbjct: 60  LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119

Query: 486 --EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
             +  +A +A   V GL D    +      QLSGGQ+QR+AIARA+ + P ++L DE  +
Sbjct: 120 EEDKERALSALERV-GLADKAYQRA----DQLSGGQQQRVAIARALAQQPDLILADEPIA 174

Query: 544 ALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT 595
           +LD ++   V   L++I      T I+  H++   +   D I+ LK G++V  G 
Sbjct: 175 SLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score =  121 bits (306), Expect = 2e-30
 Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 41/247 (16%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 1060
            +E+RN++  Y    D     ++++++   R  A +G SG GKST++    R  D      
Sbjct: 26   LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82

Query: 1061 ISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN-----------E 1107
            I G + +DG +I  + +++  LRR++G+V Q P  F  +IYEN+ YG            +
Sbjct: 83   IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142

Query: 1108 DASEIELMKATKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNP 1163
            +A E  L  A                    V DR       LSGGQ+QR+ IARAI   P
Sbjct: 143  EAVERSLRGA---------------ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEP 187

Query: 1164 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAE 1222
             +LLLDE TSALD  S   I+E + +L    T ++V H +    R +D  A +  GK+ E
Sbjct: 188  EVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247

Query: 1223 IGSHEQL 1229
             G  + L
Sbjct: 248  YGDTDTL 254

Length = 272

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  120 bits (302), Expect = 2e-30
 Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 19/217 (8%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS---GTVLIDGYDIRTLNLRSLRR 1082
            ++N+++   +  A++G SG GKST +    R  D I+   G V I+G D++  ++ +LR+
Sbjct: 20   DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79

Query: 1083 KIGLVQQEPALFSTTIYENIKYG--------NEDASEIELMKATKAANAHGFISRMPEGY 1134
             +G+V Q+P +F  +IYENI Y         N+D  E  ++   +          + E  
Sbjct: 80   NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVG-------LFEEV 132

Query: 1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR 1194
            +  +    + LSGGQ+QR+ IARA+   P +LLLDE TSALD  S  +I+E L +L    
Sbjct: 133  KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192

Query: 1195 TTIMVAHRLST-IRNADKIAVLQQGKVAEIGSHEQLL 1230
            + IMV H +    R AD  A    G++ E G  ++  
Sbjct: 193  SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229

Length = 246

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  120 bits (304), Expect = 3e-30
 Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 36/236 (15%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   +  +Y +RP  V E+++ SV+ G+  A +GP+G+GKST++  +  L +P+SG+I 
Sbjct: 5   IEVENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPAL---FATSIANNILLG------------KEDASM 481
           + G  ++  + K LR  +G V Q+ ++   F  ++ + +LLG            K+D   
Sbjct: 63  IFGKPVRK-RRKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK-- 117

Query: 482 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 541
           ++V EA +        +        Q+GE    LSGGQKQR+ +ARA+ +NP +LLLDE 
Sbjct: 118 EKVDEALERVGMEDLRD-------RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEP 166

Query: 542 TSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT 595
            + +D   +  +   L+++    +T ++V H L  V    D ++ L N  ++ SG 
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGP 221

Length = 254

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score =  120 bits (302), Expect = 3e-30
 Identities = 74/238 (31%), Positives = 123/238 (51%), Gaps = 30/238 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+RNVS ++    D    ++++L + +G  +A++G SGSGK+T++ L+     P SGT+
Sbjct: 3    IEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELM-KATKAANA 1123
            L  G D   + ++   R +G V Q  ALF   T+++N+ +G       E   +A   A  
Sbjct: 60   LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117

Query: 1124 H---------GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174
            H             R P            QLSGGQ+QRVA+ARA+   P +LLLDE   A
Sbjct: 118  HELLKLVQLDWLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFGA 166

Query: 1175 LDTASENLIQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQL 1229
            LD      ++  L +L +    TT+ V H     +  AD++ V+ +G++ ++G+ +++
Sbjct: 167  LDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  120 bits (302), Expect = 3e-30
 Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 15/221 (6%)

Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDI--RTL 1075
            I  ++NL +      A +G SG GKST +    R  D      + G + IDG D+     
Sbjct: 20   ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79

Query: 1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
            N+  LR K+G+V Q+P  F  +IY+N+ YG +      L K  K  +     S    G  
Sbjct: 80   NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHG---LAKNKKKLDEIVEKSLTSVGLW 136

Query: 1136 SHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM 1191
              +GDR      +LSGGQ+QR+ IARAI   P++LL+DE  SALD  + N+I+  + +L 
Sbjct: 137  EELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK 196

Query: 1192 EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231
            +  T I+V H +   +  +D++A  Q G++ E  + +++ +
Sbjct: 197  KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237

Length = 251

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  121 bits (305), Expect = 3e-30
 Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 18/240 (7%)

Query: 377 IEFSEVCFAY-PSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
           I F  V + Y    P  H    ++N   + GK +A VG +GSGKST+I  +  L +PT+G
Sbjct: 3   IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62

Query: 434 KILLDG----HDLKSLQLKWLREQMGLVSQ--EPALFATSIANNILLGKEDASMDRVIEA 487
            + +D     H  K   ++ +R+++G+V Q  E  LF  ++   I+ G ++  M+  ++ 
Sbjct: 63  TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN--LDE 120

Query: 488 AKAANAHSFVEGLPDGYQTQVGEGGT-QLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
            K   AH  +  L  G+   V      Q+SGGQ ++IAI   +  NP I++LDE T+ LD
Sbjct: 121 VKN-YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177

Query: 547 AESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 603
            +S+  V R L+ +    N+T I+V+H ++ V R  D ++V+K G +V   +  +L    
Sbjct: 178 PQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237

Length = 286

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  126 bits (319), Expect = 4e-30
 Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 30/233 (12%)

Query: 384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL----YEPTSGKILLDG 439
           FA          +++F V+ G+    VG SGSGKST+   +  L       TSG+++LDG
Sbjct: 15  FATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG 74

Query: 440 HDLKSLQLKWLREQMG----LVSQEP-ALF--ATSIANNI-------LLGKEDASMDRVI 485
            DL  L  + +R+  G    ++ Q+P        +I + I         G    +  R +
Sbjct: 75  RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAV 134

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
           E  +         GLPD    +      QLSGG +QR+ IA A+   PK+L+ DE T+AL
Sbjct: 135 ELLEQV-------GLPDP--ERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185

Query: 546 DAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           D  ++  +   L+ +        + + H L  V ++ D ++V+  G++VE+G 
Sbjct: 186 DVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238

Length = 539

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  121 bits (307), Expect = 4e-30
 Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 45/231 (19%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL---- 445
           + ++F +  G+    VG SGSGKS +   +  L          G+IL DG DL SL    
Sbjct: 22  DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81

Query: 446 QLKWLREQMGLVSQEP--AL---------FATSIANNILLGKEDASMDRVIEAAKAAN-- 492
             K   +++ ++ Q+P  +L          A  +  +     +  + +R IE  +     
Sbjct: 82  LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIP 141

Query: 493 -----AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
                  S+    P            +LSGG +QR+ IA A+  NPK+L+ DE T+ALD 
Sbjct: 142 DPERRLKSY----PH-----------ELSGGMRQRVMIAMALALNPKLLIADEPTTALDV 186

Query: 548 ESELIVQRALEKIMSNRTT--IVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
             +  +   L+++   + T  I++ H L  V ++ D + V+  G++VE G 
Sbjct: 187 TVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237

Length = 316

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score =  118 bits (299), Expect = 4e-30
 Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 22/214 (10%)

Query: 1024 FENLNLKVS---AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG---YDIR-TLN 1076
              +  LK+          + G SG+GKST++  +     P  GT++++G   +D R  +N
Sbjct: 10   LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69

Query: 1077 LRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
            L   +RKIGLV Q+ ALF    + EN+ +G         +K  +       +  + +   
Sbjct: 70   LPPQQRKIGLVFQQYALFPHLNVRENLAFG---------LKRKRNREDRISVDELLDLLG 120

Query: 1136 -SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME- 1192
              H+ +R   QLSGG+KQRVA+ARA+   P +LLLDE  SALD A    +   L ++ + 
Sbjct: 121  LDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180

Query: 1193 -GRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIG 1224
                 I V H LS     AD+I V++ G++  IG
Sbjct: 181  LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score =  118 bits (297), Expect = 6e-30
 Identities = 56/193 (29%), Positives = 106/193 (54%), Gaps = 23/193 (11%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---- 446
            ++ ++LN +++ GK +A +G SGSGKST+++++  L +  SG++ L+G +   L     
Sbjct: 11  KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKA 70

Query: 447 LKWLREQMGLVSQEPALFAT-SIANNILLG------KEDASMDRVIEAAKAANAHSFVEG 499
            K+ RE++G + Q  AL    ++  N+ LG       +    ++  EA +    +  ++ 
Sbjct: 71  SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK- 129

Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALE 558
                  ++ E    LSGG++QR+A+ARA+L+ P ++L DE T +LD +  + ++   LE
Sbjct: 130 ------QKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179

Query: 559 KIMSNRTTIVVAH 571
                +T I+V H
Sbjct: 180 LNDEGKTIIIVTH 192

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  119 bits (300), Expect = 6e-30
 Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 25/240 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--- 1062
            IE+ N++  +    D  I +N+NL +      A++G SG GKST I  + R  D I    
Sbjct: 4    IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60

Query: 1063 --GTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-------NEDASE 1111
              G + +DG DI    +++  LR+K+G+V Q+P  F  +I++N+ YG       +ED  E
Sbjct: 61   HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
              + ++ KAA        + +  +  +    + LSGGQ+QR+ IAR I  +P ++L+DE 
Sbjct: 121  ERVEESLKAA-------ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173

Query: 1172 TSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADK-IAVLQQGKVAEIGSHEQLL 1230
             SALD  S   I++ + KL E  T ++V H +       K  +    G++ E G  +Q+ 
Sbjct: 174  CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233

Length = 250

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score =  117 bits (296), Expect = 8e-30
 Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 35/233 (15%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +E   V   + +      ++LN  +  G+    +GPSG GK+T + M+  L EPTSG+I 
Sbjct: 1   VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAK 489
           + G D+  L  K     + +V Q  AL+   ++ +NI  G       +D   +RV E A+
Sbjct: 59  IGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAE 116

Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE- 548
                  +E L D    Q       LSGGQ+QR+A+ RA++R PK+ L+DE  S LDA+ 
Sbjct: 117 LLQ----IEHLLDRKPKQ-------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165

Query: 549 -----SELI-VQRALEKIMSNRTTIVVAH-RLSTVRDVDTIMVLKNGQVVESG 594
                +EL  +Q+ L       TTI V H ++  +   D I V+ +GQ+ + G
Sbjct: 166 RVQMRAELKRLQQRLGT-----TTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  120 bits (302), Expect = 8e-30
 Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 28/239 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I + ++SF+YP      + ++++  V  G  +A+VG +GSGKST+  L+     P +GT+
Sbjct: 6    IRVEHISFRYPDAATYAL-KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMKATKAA 1121
             + G  +    +  +RR++G+V Q P       T+ +++ +G  N      E+++    A
Sbjct: 65   TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124

Query: 1122 ----NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
                    F++R P            +LSGGQKQRVAIA  +   P I++LDEATS LD 
Sbjct: 125  LRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173

Query: 1178 ASENLIQEALD-----KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231
                  +E L+     K  +G T + + H L     AD++ V+ +G++ E G+ E++ +
Sbjct: 174  RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229

Length = 279

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score =  121 bits (305), Expect = 1e-29
 Identities = 84/237 (35%), Positives = 133/237 (56%), Gaps = 16/237 (6%)

Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKWL 450
             N++  V AG+ +  +G SG+GKST+I  V  L  PTSG +++DG DL +L   +L   
Sbjct: 21  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80

Query: 451 REQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
           R Q+G++ Q   L ++ ++  N+ L  E  +  +     K     + V GL D + +   
Sbjct: 81  RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV-GLGDKHDSY-- 137

Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR----T 565
              + LSGGQKQR+AIARA+  NPK+LL DEATSALD  +   +   L++I  NR    T
Sbjct: 138 --PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI--NRRLGLT 193

Query: 566 TIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNP 621
            +++ H +  V+ + D + V+ NG+++E GT  ++ S      A   ++S+ HLS P
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLHLSIP 250

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score =  117 bits (294), Expect = 2e-29
 Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 14/200 (7%)

Query: 377 IEFSEVCFAYPSRPHMV--FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           IEF  V   YP   +     + +N S+ AG+    VGPSG+GKST++ ++ +   PTSG 
Sbjct: 1   IEFINVTKTYP---NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT 57

Query: 435 ILLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKA 490
           I ++G D+  L    + +LR ++G+V Q+  L    ++  N+    E   +       + 
Sbjct: 58  IRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRV 117

Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
             A   V GL   ++        +LSGG++QR+AIARA++ +P IL+ DE T  LD ++ 
Sbjct: 118 PAALELV-GLSHKHRAL----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172

Query: 551 LIVQRALEKIMSNRTTIVVA 570
             +   L+KI    TT+VVA
Sbjct: 173 WEIMNLLKKINKAGTTVVVA 192

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score =  117 bits (295), Expect = 2e-29
 Identities = 73/213 (34%), Positives = 114/213 (53%), Gaps = 15/213 (7%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
             +++N  V  G   A +GPSGSGKST++ ++  L +P SG+I L+G D   +  +    
Sbjct: 15  ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DR 72

Query: 453 QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFV--EGLPDGYQTQVG 509
           ++G V Q  ALF   ++ +NI  G E     +    A+       V  EGL D Y  Q  
Sbjct: 73  KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQ-- 130

Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTI 567
                LSGGQ+QR+A+ARA+   P++LLLDE   ALDA+    ++  L K+    + TT+
Sbjct: 131 -----LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185

Query: 568 VVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 599
            V H      +V D I+V+ NG++ + G+  ++
Sbjct: 186 FVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score =  117 bits (295), Expect = 2e-29
 Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 40/239 (16%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+ N+S  YP        +N+NL ++ G  +A++G SG+GKST++  + R  +P SG++
Sbjct: 2    LEVENLSKVYP--NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59

Query: 1066 LIDGYDIRTLN---LRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAA 1121
            L++G DI  L    LR LRR+IG++ Q   L    T+ EN+ +G                
Sbjct: 60   LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHG--------------RL 105

Query: 1122 NAHGFI----SRMPE-------------GYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 1164
                       R  E             G       R  QLSGGQ+QRVAIARA+ + P 
Sbjct: 106  GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165

Query: 1165 ILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220
            ++L DE  ++LD  +   + + L ++ +  G T I+  H++   +  AD+I  L+ G++
Sbjct: 166  LILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  117 bits (294), Expect = 2e-29
 Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 12/221 (5%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +EL+ V +         I  N++L V AG  +A+ G SG GKST++ +V     P SGT+
Sbjct: 4    LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
            L +G D+ TL   + R+++    Q PALF  T+ +N+ +      +I   +  +AA A  
Sbjct: 61   LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF----PWQIRNRRPDRAA-ALD 115

Query: 1126 FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
             ++R      S +     +LSGG+KQR+A+ R +   P ILLLDE TSALD +++  I+E
Sbjct: 116  LLARFALP-DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEE 174

Query: 1186 ALDKLM--EGRTTIMVAH-RLSTIRNADKIAVLQQGKVAEI 1223
             + + +  +    + + H +   IR+ADK+  LQ G   E+
Sbjct: 175  MIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215

Length = 223

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score =  115 bits (291), Expect = 2e-29
 Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 27/198 (13%)

Query: 1015 YPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG----Y 1070
            YP  P++   + LN     G  LA++G +G+GKST++  +     P SG VLIDG    Y
Sbjct: 1    YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58

Query: 1071 DIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG------NEDASEIELMKATKAAN 1122
              +   L   R+++GLV Q+P   LF+  + +++ +G      +E   E  + +A  A  
Sbjct: 59   SRK--GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVG 116

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
            A G   R               LSGG+K+RVAIA A+   P +LLLDE T+ LD A    
Sbjct: 117  ASGLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165

Query: 1183 IQEALDKLMEGRTTIMVA 1200
            +   L +L     T++++
Sbjct: 166  MLAILRRLRAEGMTVVIS 183

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score =  117 bits (294), Expect = 3e-29
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 21/229 (9%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   V   +     +  ++++  + +G+  A +GPSGSGK+T++ ++  L  P SG IL
Sbjct: 3   IEVRNVSKRFGDFVAL--DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLG-KEDASMDRVIEAAKAANAH 494
             G D   + ++     +G V Q  ALF   ++ +N+  G +     +R  EA   A  H
Sbjct: 61  FGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVH 118

Query: 495 SFV-----EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
             +     + L D Y  Q       LSGGQ+QR+A+ARA+   PK+LLLDE   ALDA+ 
Sbjct: 119 ELLKLVQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171

Query: 550 ELIVQRALEKIMS--NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
              ++R L ++    + TT+ V H      +V D ++V+  G++ + GT
Sbjct: 172 RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  116 bits (292), Expect = 3e-29
 Identities = 57/229 (24%), Positives = 113/229 (49%), Gaps = 29/229 (12%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           ++   +   Y  +     + ++ ++  G  +  +GP+G+GK+T++ ++  L  P+SG I 
Sbjct: 1   LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFAT----------SIANNILLGKEDASMDRVIE 486
           +DG D+   Q + LR ++G + QE  ++            +    I   +  A +D V+E
Sbjct: 58  IDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116

Query: 487 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
                        L D  + ++G     LSGG ++R+ IA+A++ +P IL++DE T+ LD
Sbjct: 117 LV----------NLGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162

Query: 547 AESELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
            E  +  +  L ++  +R  I+  H +  V  + + + VL  G++V  G
Sbjct: 163 PEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  117 bits (293), Expect = 4e-29
 Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 25/232 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT- 1064
            I+ R+V+F Y    D    + +++++     +A +G SG GKST + L  R  D I  T 
Sbjct: 4    IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60

Query: 1065 ----VLIDGYDIRTLNLR--SLRRKIGLVQQEPALFSTTIYENIKYG-------NEDASE 1111
                + IDG +I    ++   LR+ +G+V Q P  F  +I+EN+ YG       +     
Sbjct: 61   LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
              + +  K A        + +  +  + +    LSGGQ+QR+ IARA+  +PS+LL+DE 
Sbjct: 121  QRVEETLKGA-------ALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173

Query: 1172 TSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAE 1222
             SALD  S   ++E + +L +  T ++V H +    R +DK A    G++ E
Sbjct: 174  ASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225

Length = 250

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score =  116 bits (293), Expect = 5e-29
 Identities = 74/240 (30%), Positives = 124/240 (51%), Gaps = 21/240 (8%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT- 1064
            +E R +SF Y    D     +++L+    +  A++G SG GKST +  + R  D I G  
Sbjct: 7    MEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63

Query: 1065 ----VLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-----NEDASEIE 1113
                +L+DG +I    +++  LRR++G+V Q+P  F  +I+EN+ YG      +D + + 
Sbjct: 64   VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLA 123

Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
                    +A  +     +  +  + +  + LSGGQ+QR+ IARA+   P +LL+DE  S
Sbjct: 124  ERVERSLRHAALW-----DEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPAS 178

Query: 1174 ALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
            ALD  +   I+E + +L    T I+V H +    R +D  A    GK+ E+G  EQ+  +
Sbjct: 179  ALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238

Length = 253

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score =  115 bits (289), Expect = 6e-29
 Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 21/200 (10%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066
             + N+SF Y  +    I ++L+L + AG  +A+ G++G+GK+T+  ++       SG++L
Sbjct: 1    RIENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58

Query: 1067 IDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNEDASEIELMKAT--KAAN 1122
            ++G  I     +  R+ IG V Q+    LF+ ++ E +  G ++         T  K  +
Sbjct: 59   LNGKPI---KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
             +    R P    S        LSGGQKQR+AIA A+L    +L+ DE TS LD  +   
Sbjct: 116  LYALKERHP---LS--------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164

Query: 1183 IQEALDKLM-EGRTTIMVAH 1201
            + E + +L  +G+  I++ H
Sbjct: 165  VGELIRELAAQGKAVIVITH 184

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score =  115 bits (290), Expect = 6e-29
 Identities = 79/230 (34%), Positives = 111/230 (48%), Gaps = 33/230 (14%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE  NVS  YP    +    +++L +  G  L + G SG+GK+T++ L+     P  G V
Sbjct: 2    IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59

Query: 1066 LIDGYDIRTLNLR---SLRRKIGLVQQEPALFST-TIYENIKYGNE----DASEIELMKA 1117
             I G D+  L  R    LRR+IG+V Q+  L    T+YEN+    E       EI+  + 
Sbjct: 60   RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ-RRV 118

Query: 1118 TKAANAHGFISRM---PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174
              A    G   +    PE           QLSGG++QRVAIARAI+ +P +LL DE T  
Sbjct: 119  GAALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167

Query: 1175 LDTASENLIQEALDKLME----GRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219
            LD     L +  LD L      G T I+  H LS +   A ++ +L  G+
Sbjct: 168  LDPD---LSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score =  114 bits (288), Expect = 1e-28
 Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 25/215 (11%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFV-GPSGSGKSTIISMVQRLYEPTSGKI 435
           IEF  V  AYP        +++  +  G+ F F+ GPSG+GK+T++ ++     P+ G++
Sbjct: 2   IEFHNVSKAYP-GGVAALHDVSLHIRKGE-FLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59

Query: 436 LLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLG------KEDASMDRVI 485
            + G D+  L   QL  LR ++G+V Q+  L    ++  N+ L       KE     RV 
Sbjct: 60  RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
            A +         GL             QLSGG++QR+AIARA++ +P +LL DE T  L
Sbjct: 120 AALRQV-------GLEHKADAFPE----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168

Query: 546 DAESELIVQRALEKIMSNRTTIVVA-HRLSTVRDV 579
           D +    +   L+++    TT++VA H LS V  V
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRV 203

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score =  124 bits (314), Expect = 1e-28
 Identities = 77/235 (32%), Positives = 122/235 (51%), Gaps = 18/235 (7%)

Query: 1008 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067
            LR VSF+                ++    + +VG++GSGKST++   MR  +   G + +
Sbjct: 1326 LRGVSFR----------------IAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRV 1369

Query: 1068 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 1127
            +G +I    LR LRR+  ++ Q+P LF  T+ +N+    E AS  E+  A +       +
Sbjct: 1370 NGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE-ASSAEVWAALELVGLRERV 1428

Query: 1128 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS-ILLLDEATSALDTASENLIQEA 1186
            +   EG  S V + G   S GQ+Q + +ARA+LK  S  +L+DEAT+ +D A +  IQ  
Sbjct: 1429 ASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488

Query: 1187 LDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241
            +       T I +AHRL T+   DKI V+  G VAE+GS  +L+     I+  ++
Sbjct: 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543

Length = 1560

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score =  115 bits (290), Expect = 2e-28
 Identities = 68/191 (35%), Positives = 103/191 (53%), Gaps = 23/191 (12%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDL--KSLQLK 448
           N+N  +   +  AF+GPSG GKST++    R+YE  P     G+ILLDG ++      + 
Sbjct: 31  NINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90

Query: 449 WLREQMGLVSQEPALFATSIANNILLGKE------DASMDRVIEAA--KAANAHSFVEGL 500
            LR ++G+V Q+P  F  SI +NI  G         A MD  +E A  KAA        L
Sbjct: 91  LLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAA--------L 142

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
            +  + ++ + G  LSGGQ+QR+ IAR +   P++LLLDE  SALD  S   ++  + ++
Sbjct: 143 WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202

Query: 561 MSNRTTIVVAH 571
             + T ++V H
Sbjct: 203 KQDYTVVIVTH 213

Length = 260

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  115 bits (289), Expect = 2e-28
 Identities = 67/218 (30%), Positives = 117/218 (53%), Gaps = 21/218 (9%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEP---TSGKILLDGHDLKS--L 445
           +  ++N  +   +  AF+GPSG GKST +    R+  + P     G++ +DG D+ S   
Sbjct: 20  ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79

Query: 446 QLKWLREQMGLVSQEPALFATSIANNILLG-------KEDASMDRVIEAAKAANAHSFVE 498
            +  LR ++G+V Q+P  F  SI +N+  G       K    +D ++E      + + V 
Sbjct: 80  NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVE-----KSLTSV- 133

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
           GL +    ++ +   +LSGGQ+QR+ IARA+   P +LL+DE  SALD  +  +++  ++
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193

Query: 559 KIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           ++  N T IVV H +   + V D +   ++G++VE  T
Sbjct: 194 ELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231

Length = 251

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score =  114 bits (288), Expect = 2e-28
 Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 21/235 (8%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IEF  V   +   P  V  N++ ++D G+    +GPSGSGKST++  + +L E TSG ++
Sbjct: 2   IEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59

Query: 437 LDGHDLK--SLQLKWLREQMGLVSQEPALFATSIA-NNILLGKEDASMDRVIEAAKAANA 493
           +DG  +    +  + +R++ G+V Q+  LF    A  N++ G         +  A    A
Sbjct: 60  VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP------LRVRGASKEEA 113

Query: 494 HSFVEGLPD--GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE- 550
                 L    G   +     ++LSGGQ+QR+AIARA+   PK++L DE TSALD E   
Sbjct: 114 EKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173

Query: 551 --LIVQRAL-EKIMSNRTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGTHVDLIS 601
             L V + L E+ M   T ++V H +     V + ++ +  G++ E G    LI 
Sbjct: 174 EVLKVMQDLAEEGM---TMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225

Length = 240

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score =  113 bits (285), Expect = 2e-28
 Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 34/232 (14%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + L  V ++Y   P     E  +L V+ G  +A++G SG+GKST+++L+  F +P SG++
Sbjct: 1    LALDKVRYEYEHLP----ME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDA---SEIELMKATKAA 1121
             ++        L   +R + ++ QE  LF+  T+ +NI  G       +  +  K   AA
Sbjct: 56   KVNDQSH--TGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113

Query: 1122 NAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
               G   ++ R+PE           QLSGGQ+QRVA+AR +++   ILLLDE  SALD  
Sbjct: 114  QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162

Query: 1179 SENLIQEALDKLM-----EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIG 1224
               L +E L  +        RT +MV H LS     A +IAV+ QGK+  + 
Sbjct: 163  ---LREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  115 bits (290), Expect = 2e-28
 Identities = 81/253 (32%), Positives = 128/253 (50%), Gaps = 31/253 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF---YDPIS 1062
            +E R++ + YP        + +N K   G  +A++G +G+GKST   L + F     P S
Sbjct: 2    LETRDLKYSYP--DGTEALKGINFKAEKGEMVALLGPNGAGKST---LFLHFNGILKPTS 56

Query: 1063 GTVLIDGYDIRTLN--LRSLRRKIGLVQQEP--ALFSTTIYENIKYG------NEDASEI 1112
            G VLI G  I+     L  +R+ +G+V Q P   LF+ T+ E++ +G      +++  E 
Sbjct: 57   GEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK 116

Query: 1113 ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1172
             + +A KA    GF ++ P             LSGGQK+RVAIA  +   P I++LDE T
Sbjct: 117  RVKEALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPT 165

Query: 1173 SALDTASENLIQEALDKL-MEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1230
            S LD    + I + L  L  EG T I+  H +  +   ADK+ V+  GK+ + G+ +++ 
Sbjct: 166  SGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225

Query: 1231 RKENGIYKQLIRL 1243
                 I K  +RL
Sbjct: 226  SDIETIRKANLRL 238

Length = 275

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  113 bits (286), Expect = 3e-28
 Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 28/231 (12%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           ++   +   Y        ++L+ +V  G+ F  +G +G+GK+T + M+     PTSG   
Sbjct: 1   LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILL-----GKEDASMDRVIEAAKA 490
           ++G+ +++   K  R+ +G   Q  ALF   ++  ++       G   + +   +E    
Sbjct: 61  INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELL-- 117

Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
                   GL D    +       LSGG K+++++A A++  P +LLLDE TS LD  S 
Sbjct: 118 --LRVL--GLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169

Query: 551 LIVQRALEKIMSNRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGT 595
             +   + ++   R+ I+  H       L      D I ++ +G++   G+
Sbjct: 170 RAIWDLILEVRKGRSIILTTHSMDEAEALC-----DRIAIMSDGKLRCIGS 215

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score =  113 bits (284), Expect = 4e-28
 Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 22/210 (10%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL----KSLQLKWLR 451
            ++F ++   T    G SG+GKST++  +  L +P  G I+L+G  L    K + L   +
Sbjct: 16  KIDFDLNEEVT-GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74

Query: 452 EQMGLVSQEPALFA-TSIANNILLG-KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ-- 507
            ++GLV Q+ ALF   ++  N+  G K   + +  I           V+ L D       
Sbjct: 75  RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRI----------SVDELLDLLGLDHL 124

Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRT 565
           +     QLSGG+KQR+A+ARA+   P++LLLDE  SALD    L +   L++I    N  
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184

Query: 566 TIVVAHRLSTV-RDVDTIMVLKNGQVVESG 594
            I V H LS      D I+V+++G++   G
Sbjct: 185 VIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  113 bits (284), Expect = 4e-28
 Identities = 65/169 (38%), Positives = 100/169 (59%), Gaps = 10/169 (5%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           +  N++ SV AG+  A  GPSG GKST++ +V  L  PTSG +L +G D+ +L+ +  R+
Sbjct: 18  ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77

Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
           Q+   +Q PALF  ++ +N++   +     R   AA       F   LPD   + + +  
Sbjct: 78  QVSYCAQTPALFGDTVEDNLIFPWQ-IRNRRPDRAAALDLLARF--ALPD---SILTKNI 131

Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
           T+LSGG+KQRIA+ R +   PKILLLDE TSALD  +    +R +E+++
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN----KRNIEEMI 176

Length = 223

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  113 bits (284), Expect = 4e-28
 Identities = 61/223 (27%), Positives = 114/223 (51%), Gaps = 16/223 (7%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            ++L N++ +Y  +      + ++L +  G    ++G +G+GK+T++ ++     P SGT+
Sbjct: 1    LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 1124
             IDG D+     + LRR+IG + QE  ++   T+ E + Y       I  +K   +    
Sbjct: 57   RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDY-------IAWLKGIPSKEVK 108

Query: 1125 GFISRMPE--GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
              +  + E          +   LSGG ++RV IA+A++ +PSIL++DE T+ LD      
Sbjct: 109  ARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIR 168

Query: 1183 IQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224
             +  L +L E R  I+  H +  + +  +++AVL +GK+   G
Sbjct: 169  FRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score =  112 bits (283), Expect = 4e-28
 Identities = 62/216 (28%), Positives = 110/216 (50%), Gaps = 21/216 (9%)

Query: 382 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD 441
           + F+Y  +   + ++L+  + AG+  A  G +G+GK+T+  ++  L + +SG ILL+G  
Sbjct: 5   ISFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP 63

Query: 442 LKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFV 497
           +K+   K  R+ +G V Q+    LF  S+   +LLG ++      +     K  + ++  
Sbjct: 64  IKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK 120

Query: 498 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 557
           E  P             LSGGQKQR+AIA A+L    +L+ DE TS LD ++   V   +
Sbjct: 121 ERHP-----------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169

Query: 558 EKIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQVV 591
            ++ +    ++V  H    +  V D +++L NG +V
Sbjct: 170 RELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score =  113 bits (285), Expect = 4e-28
 Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 26/237 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE +NVS  +       +  N++L +  G  + ++G SGSGKST++  + +  +  SG +
Sbjct: 2    IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58

Query: 1066 LIDGYDIR--TLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAA- 1121
            ++DG  +    ++ R +R++ G+V Q+  LF   T  EN+ +G      + +  A+K   
Sbjct: 59   IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEA 113

Query: 1122 --NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
               A   ++++  G          +LSGGQ+QRVAIARA+   P ++L DE TSALD   
Sbjct: 114  EKQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP-- 169

Query: 1180 ENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
              L  E L K+M     EG T ++V H +      A ++  + +G++AE G  + L+
Sbjct: 170  -ELRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224

Length = 240

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score =  119 bits (300), Expect = 6e-28
 Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 28/230 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +ELR +S  +     +   + ++L V  G   A++G++G+GKST++ ++   Y P SG +
Sbjct: 9    LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65

Query: 1066 LIDGYDIRTLNLR-SLRRKIGLVQQEPALFST-TIYENIKYGNEDASEI------ELMKA 1117
            LIDG  +   + R +L   I  V QE +L    ++ ENI  G E            + + 
Sbjct: 66   LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
             +   A   +   P+   + VGD    LS  Q+Q V IARA+  +  +L+LDE T+AL T
Sbjct: 126  ARELLARLGLDIDPD---TLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL-T 177

Query: 1178 ASENLIQEALDKLM-----EGRTTIMVAHRLSTI-RNADKIAVLQQGKVA 1221
              E    E L  L+     +G   I ++HRL  +   AD+I VL+ G+V 
Sbjct: 178  VKE---TERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224

Length = 500

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score =  116 bits (293), Expect = 6e-28
 Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 31/224 (13%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 1081
            T  ++++L V  G  + ++G SG GK+T++ ++       +GT+   G DI    L   +
Sbjct: 18   TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQK 75

Query: 1082 RKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD 1140
            R  G+V Q  ALF + T+ +NI YG ++       +    A     ++ + +     VG 
Sbjct: 76   RDYGIVFQSYALFPNLTVADNIAYGLKN-------RGMGRAEVAERVAELLD----LVGL 124

Query: 1141 RGV------QLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALDKLME- 1192
             G       QLSGGQ+QRVA+ARA+  +P +LLLDE  SALD    E+L  E + +L   
Sbjct: 125  PGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE-IRQLQRR 183

Query: 1193 -GRTTIMVAH----RLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231
             G TTIMV H     LS    AD+I V+  G + ++G+ +++ R
Sbjct: 184  LGVTTIMVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYR 224

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score =  112 bits (282), Expect = 6e-28
 Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 32/231 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + L  + F Y  +P      + +L  + G   A+VG SGSGKST+++L+  F  P SG V
Sbjct: 1    VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG--------NEDASEIELMK 1116
            LI+G D+         R + ++ QE  LF+  T+ +N+  G         ED   IE   
Sbjct: 56   LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIE--V 111

Query: 1117 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
            A       G   R+P            +LSGG++QRVA+AR ++++  +LLLDE  +ALD
Sbjct: 112  ALARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160

Query: 1177 TASENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224
             A    + + +  L      T +MV H+    +  A ++  L  G++A  G
Sbjct: 161  PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score =  117 bits (294), Expect = 6e-28
 Identities = 79/214 (36%), Positives = 123/214 (57%), Gaps = 13/214 (6%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLR 1081
            ++ +L +  G    ++G SGSGKST++ L+ R  +P  G VLIDG DI  ++   LR +R
Sbjct: 45   KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104

Query: 1082 RK-IGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVG 1139
            RK I +V Q  AL    T+ +N  +G E A      +  KA +A   +     G +++  
Sbjct: 105  RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV-----GLENYAH 159

Query: 1140 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTI 1197
                +LSGG +QRV +ARA+  NP ILL+DEA SALD      +Q+ L KL     RT +
Sbjct: 160  SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219

Query: 1198 MVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLL 1230
             ++H L   +R  D+IA++Q G+V ++G+ +++L
Sbjct: 220  FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253

Length = 400

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score =  113 bits (284), Expect = 7e-28
 Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 19/236 (8%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+ +++  Y     +    +++ +   G    ++G++G+GK+T++ ++     P SG V
Sbjct: 2    LEVTDLTKSYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNE--DASEIELMKATKAAN 1122
             IDG D    +   +RRKIG++  E  L++  T  EN+KY       S  E+        
Sbjct: 60   TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKAR----- 113

Query: 1123 AHGFISRMPE--GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
                I+ + +      ++  R  + S G KQ+VAIARA++ +PSIL+LDE TS LD  + 
Sbjct: 114  ----IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR 169

Query: 1181 NLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1234
                + + +L  EGR  I  +H +  +    D++ VL +G+V   GS E L  +  
Sbjct: 170  RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225

Length = 245

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score =  108 bits (273), Expect = 8e-28
 Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 13/129 (10%)

Query: 418 STIISMVQRLYEPTSGKILLDGHDLKSL-QLKWLREQMGLVSQEPALFAT-SIANNILLG 475
           ST++ ++  L +PTSG ILLDG D   L   K LR+++G+V Q+P LF   ++  N+  G
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 476 -KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 534
            ++  +  R  EA +      F++  P             LSGGQKQR+AIARA+L+ PK
Sbjct: 61  LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110

Query: 535 ILLLDEATS 543
           +LLLDE T+
Sbjct: 111 LLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score =  113 bits (284), Expect = 9e-28
 Identities = 67/216 (31%), Positives = 117/216 (54%), Gaps = 24/216 (11%)

Query: 373 LAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT- 431
           +A +I+  ++   Y S      E++N +++     AF+GPSG GKST++  + R++E   
Sbjct: 1   MAKRIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIP 58

Query: 432 ----SGKILLDGHDL--KSLQLKWLREQMGLVSQEPALFAT-SIANNILLG------KED 478
                G++LLDG DL    +    +R  +G+V Q P  F T SI +N++ G      +  
Sbjct: 59  GARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNK 118

Query: 479 ASMDRVIEAA-KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 537
             +D ++E + + AN       L +  + ++ + G  LSGGQ+QR+ IARA+   P +LL
Sbjct: 119 KDLDELVEKSLRGAN-------LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLL 171

Query: 538 LDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573
           +DE  SALD  S L ++  + ++  + T ++V H +
Sbjct: 172 MDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207

Length = 258

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  112 bits (282), Expect = 1e-27
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 24/220 (10%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PT---SGKILLDGHDL--K 443
             + +N+N  +      A +GPSG GKST I  + R+ +  P     G I LDG D+   
Sbjct: 16  AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75

Query: 444 SLQLKWLREQMGLVSQEPALFATSIANNILLG-------KEDASMDRVIEAAKAANAHSF 496
           ++ +  LR+++G+V Q+P  F  SI +N+  G        ED   +RV E+ KAA     
Sbjct: 76  AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAA----- 130

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
              L D  + ++ +    LSGGQ+QR+ IAR +  +P+++L+DE  SALD  S   ++  
Sbjct: 131 --ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188

Query: 557 LEKIMSNRTTIVVAHRLSTVRDVD--TIMVLKNGQVVESG 594
           + K+  + T ++V H +     V   T   L NG+++ESG
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFL-NGEIIESG 227

Length = 250

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score =  110 bits (278), Expect = 1e-27
 Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 26/197 (13%)

Query: 386 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG----HD 441
           YP  P  V + LNF+ + G+  A +G +G+GKST++  +  L  P SG +L+DG    + 
Sbjct: 1   YPGGPE-VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYS 59

Query: 442 LKSLQLKWLREQMGLVSQEP--ALFATSIANNILLG------KEDASMDRVIEAAKAANA 493
            K L L+  R+++GLV Q+P   LFA  +  ++  G       E     RV EA  A  A
Sbjct: 60  RKGL-LER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA 117

Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
               E                LSGG+K+R+AIA AV   P +LLLDE T+ LD      +
Sbjct: 118 SGLRERPT-----------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166

Query: 554 QRALEKIMSNRTTIVVA 570
              L ++ +   T+V++
Sbjct: 167 LAILRRLRAEGMTVVIS 183

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score =  112 bits (282), Expect = 1e-27
 Identities = 73/233 (31%), Positives = 125/233 (53%), Gaps = 12/233 (5%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+  +SF+Y  R      ++++  V  GR +A++G +G+GKST+ SL+ R Y    G +
Sbjct: 2    LEVAGLSFRYGAR---RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIKYGNEDASEIELMKATKAANAH 1124
             + G+D+R     +L R +G+V Q+P L    ++ +N++Y    A+   L +A   A   
Sbjct: 59   SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARARIA 114

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
              ++R+  G      D+  +L+GG ++RV IARA+L  P++LLLDE T  LD AS   I 
Sbjct: 115  ELLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172

Query: 1185 EALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1235
              +  L   +G + +   H +  I   D++ VL +G+V   G+  +L     G
Sbjct: 173  AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGG 225

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  113 bits (283), Expect = 1e-27
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 15/218 (6%)

Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDI-RTLNL 1077
             +++NL + A +  A++G SG GKST++  + R  D      I+G + +DG DI   +++
Sbjct: 19   LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78

Query: 1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSH 1137
              LR K+G+V Q+P  F  +IYEN+ YG       + +K  K  +     S         
Sbjct: 79   ADLRIKVGMVFQKPNPFPMSIYENVAYG----LRAQGIKDKKVLDEVVERSLRGAALWDE 134

Query: 1138 VGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG 1193
            V DR       LSGGQ+QR+ IAR I   P ++L+DE TSALD  + + I+E +++L + 
Sbjct: 135  VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN 194

Query: 1194 RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
             T ++V H +   R  +D+ A    G++ E    + + 
Sbjct: 195  YTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232

Length = 249

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  113 bits (284), Expect = 1e-27
 Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 16/238 (6%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I  +NVSF+Y      T+ ++++  +  G+  ++VG +GSGKST+  L++      SG +
Sbjct: 8    IVFKNVSFQYQSDASFTL-KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNEDAS-EIELM--KATKA 1120
              +   I   N   LR+ IG+V Q P      + +  ++ +G E+ +   + M  + ++A
Sbjct: 67   FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126

Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
                  + R      +        LSGGQKQRVAIA  +  NPS+++LDEATS LD  + 
Sbjct: 127  LKQVDMLERADYEPNA--------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178

Query: 1181 NLIQEALDKLMEGR--TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGI 1236
              + + + K+      T I + H LS    AD + V+ +G V + G+  ++      +
Sbjct: 179  QNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEEL 236

Length = 269

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  113 bits (284), Expect = 1e-27
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 25/239 (10%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  V F Y S      ++++F++  G+  + VG +GSGKSTI  ++  + +  SG+I 
Sbjct: 8   IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPA-LFATSI-ANNILLGKEDASM------DRVIEAA 488
            +   +     + LR+ +G+V Q P   F  SI   ++  G E+ ++       RV EA 
Sbjct: 68  YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEAL 127

Query: 489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD-- 546
           K  +     +  P+            LSGGQKQR+AIA  +  NP +++LDEATS LD  
Sbjct: 128 KQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176

Query: 547 AESELI--VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603
           A   L+  V++   K   N T I + H LS   + D ++V+  G V + GT  ++    
Sbjct: 177 ARQNLLDLVRKV--KSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233

Length = 269

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  112 bits (283), Expect = 1e-27
 Identities = 73/229 (31%), Positives = 110/229 (48%), Gaps = 39/229 (17%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---- 1061
            I L+NV+  Y         +N+   +  G+  A++G SG GKSTV+  + R  D I    
Sbjct: 14   ISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70

Query: 1062 -SGTVLIDGYDIRTLNLR--SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKAT 1118
              G VL DG D+    +    +RR+IG+V Q+P  F  +IYENI +G             
Sbjct: 71   LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG------------- 117

Query: 1119 KAANAHGFISRMPEGYQS-------------HVGDRGVQLSGGQKQRVAIARAILKNPSI 1165
              A  +G+   M E  +               + + G  LSGGQ+QR+ IAR I   P +
Sbjct: 118  --ARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEV 175

Query: 1166 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIA 1213
            +L+DE  SALD  S   I+E + +L +  T ++V H +   +R +D  A
Sbjct: 176  ILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTA 224

Length = 269

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  113 bits (283), Expect = 2e-27
 Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 21/235 (8%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+ N+ FKY    D+     ++  ++ G  ++++GQ+GSGKST   L+   ++   G V
Sbjct: 5    LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMK----A 1117
             IDG  +   N+ +LRRKIG+V Q P       T+ +++ +G  N+     E++K    A
Sbjct: 65   KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
              A N   F +R P            +LSGGQKQRVA+A  I   P I++LDE+TS LD 
Sbjct: 125  LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173

Query: 1178 ASENLIQEALDKLMEGR--TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1230
                 I   + ++ E    T + + H L    ++D+I V++ G++ +  +  +L 
Sbjct: 174  TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228

Length = 277

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score =  112 bits (283), Expect = 2e-27
 Identities = 77/255 (30%), Positives = 128/255 (50%), Gaps = 34/255 (13%)

Query: 995  ASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV 1054
            A K+ T  +  +  R+VS  Y  +  +    +++L +      A +G SG GKST +  +
Sbjct: 9    ADKKATATEIKMRARDVSVFYGEKQAL---FDVDLDIPEKTVTAFIGPSGCGKSTFLRCL 65

Query: 1055 MRFYDPI-----SGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-- 1105
             R  D I     +G + +DG DI    L++  LR ++G+V Q+P  F  +IYEN+ YG  
Sbjct: 66   NRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPR 125

Query: 1106 ----NEDASEIE--LMKATKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAI 1155
                    +E++  +  + + A           G    V DR    G  LSGGQ+QR+ I
Sbjct: 126  IHGLARSKAELDEIVETSLRKA-----------GLWEEVKDRLHEPGTGLSGGQQQRLCI 174

Query: 1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAV 1214
            ARAI  +P ++L+DE  SALD  +   ++E +D+L +  T ++V H +    R + + A 
Sbjct: 175  ARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAF 234

Query: 1215 LQQGKVAEIGSHEQL 1229
               G + E+G  E++
Sbjct: 235  FHLGNLVEVGDTEKM 249

Length = 267

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score =  112 bits (282), Expect = 2e-27
 Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 4/238 (1%)

Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            G + +++++ KY       + EN++  +S G+ + ++G++GSGKST++S  +R  +   G
Sbjct: 1    GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             + IDG    ++ L+  R+  G++ Q+  +FS T  +N+       S+ E+ K  +    
Sbjct: 59   DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLD-PYGKWSDEEIWKVAEEVGL 117

Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
               I + P      + D G  LS G KQ + +AR++L    ILLLDE ++ LD  +  +I
Sbjct: 118  KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI 177

Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241
            ++ L +     T I+  HR+  +    +  V+++ KV +  S ++LL  E   +KQ I
Sbjct: 178  RKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAI 234

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score =  117 bits (295), Expect = 3e-27
 Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 29/222 (13%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--Q 453
            ++ +V  G+  A +G +G+GKST++ ++  +Y P SG+IL+DG   K +     R+   
Sbjct: 26  GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG---KPVAFSSPRDALA 82

Query: 454 MG--LVSQEPALFAT-SIANNILLGKEDAS----MDRVIEAAKAANAHSFVEGLPDGYQT 506
            G   V QE +L    S+A NI LG+E       +DR     +A    + + GL     T
Sbjct: 83  AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL-GLDIDPDT 141

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD-AESELIVQRALEKIM---- 561
            VG+    LS  Q+Q + IARA+  + ++L+LDE T+AL   E+E      L  ++    
Sbjct: 142 LVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE-----RLFDLIRRLK 192

Query: 562 -SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
                 I ++HRL  V ++ D I VL++G+VV +       S
Sbjct: 193 AQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETS 234

Length = 500

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score =  110 bits (277), Expect = 3e-27
 Identities = 63/208 (30%), Positives = 111/208 (53%), Gaps = 10/208 (4%)

Query: 1019 PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV-----LIDGYDIR 1073
              +    N+N+++  G+   +VGQ G GKS+++  ++     + G V             
Sbjct: 12   SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71

Query: 1074 TLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEG 1133
                R+ R  +    Q+P L + T+ ENI +G+    +      T A +    I  +P G
Sbjct: 72   ATRSRN-RYSVAYAAQKPWLLNATVEENITFGSPFNKQ-RYKAVTDACSLQPDIDLLPFG 129

Query: 1134 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALDKLM- 1191
             Q+ +G+RG+ LSGGQ+QR+ +ARA+ +N +I+ LD+  SALD   S++L+QE + K + 
Sbjct: 130  DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189

Query: 1192 -EGRTTIMVAHRLSTIRNADKIAVLQQG 1218
             + RT ++V H+L  + +AD I  ++ G
Sbjct: 190  DDKRTLVLVTHKLQYLPHADWIIAMKDG 217

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score =  111 bits (279), Expect = 3e-27
 Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 12/212 (5%)

Query: 1038 AVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQE 1090
            A++G SGSGKST++  + R  D      I+G+++ +G++I     +   LR++IG+V Q+
Sbjct: 35   ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94

Query: 1091 PALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150
            P  F  +IYEN+ YG       +     +A       + + +  +  + D  + LSGGQ+
Sbjct: 95   PNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ 154

Query: 1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTI-RNA 1209
            QRV IAR +  +P I+LLDE TSALD  S   I+E L  L +  T ++V   +    R +
Sbjct: 155  QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRIS 214

Query: 1210 DKIAVLQQGKVAEIGSHEQLL----RKENGIY 1237
            D+      G + E    +Q+      KE   Y
Sbjct: 215  DRTGFFLDGDLIEYNDTKQMFMNPKHKETEDY 246

Length = 252

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score =  116 bits (294), Expect = 4e-27
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 27/229 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+R ++ ++P    +   ++++L V  G   A++G++G+GKST++ ++   Y P SG +
Sbjct: 5    LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61

Query: 1066 LIDGYDIRTLNLR-SLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANA 1123
             +DG ++R  + R ++R  IG+V Q   L  T T+ ENI  G E +    + +    A  
Sbjct: 62   RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI 121

Query: 1124 HGFISR--MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
                 R  +P    + V D    LS G++QRV I +A+ +   +L+LDE T+ L T  E 
Sbjct: 122  KELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVL-TPQE- 175

Query: 1182 LIQEALDKLM--------EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1221
                  D+L         EG+T I + H+L  +   AD++ VL++GKV 
Sbjct: 176  -----ADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219

Length = 501

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  111 bits (279), Expect = 4e-27
 Identities = 72/245 (29%), Positives = 128/245 (52%), Gaps = 27/245 (11%)

Query: 1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-- 1059
            +K  +E +N++  Y  +  +    ++NL +   +  A++G SG GKST +  + R  D  
Sbjct: 1    MKIKMESKNLNLWYGEKQAL---NDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57

Query: 1060 ---PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN-----EDA 1109
                I G VL+DG +I  + +++  LR+++G+V Q+P  F  +IY+N+ YG      +D 
Sbjct: 58   SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDK 117

Query: 1110 SEIELM---KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 1166
             E++ +      KAA        + +  +  +    ++LSGGQ+QR+ IAR I   P ++
Sbjct: 118  KELDKIVEWALKKAA--------LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVI 169

Query: 1167 LLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGS 1225
            L+DE TSALD  S   I++ + +L +  T ++V H +    R +D  A    G + E   
Sbjct: 170  LMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNK 229

Query: 1226 HEQLL 1230
             E++ 
Sbjct: 230  TEKIF 234

Length = 251

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score =  106 bits (266), Expect = 6e-27
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 13/129 (10%)

Query: 1048 STVISLVMRFYDPISGTVLIDGYDIRTLN-LRSLRRKIGLVQQEPALF-STTIYENIKYG 1105
            ST++ L+     P SGT+L+DG D   L+  + LR++IG+V Q+P LF   T+ EN+ +G
Sbjct: 1    STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 1106 -NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 1164
              +  ++    +A +      F+ R          +    LSGGQKQRVAIARA+LK P 
Sbjct: 61   LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110

Query: 1165 ILLLDEATS 1173
            +LLLDE T+
Sbjct: 111  LLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  111 bits (279), Expect = 6e-27
 Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 28/238 (11%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQR---LYEPTS--GKILLDGHDLKSLQLK-- 448
           N+   +  GK  A +GPSG GKST++  + R   L E  S  G++L DG DL   ++   
Sbjct: 31  NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90

Query: 449 WLREQMGLVSQEPALFATSIANNILLGKE----DASMDRVIEAA--KAANAHSFVEGLPD 502
            +R ++G+V Q+P  F  SI  NI  G         MD ++E +  KAA        + D
Sbjct: 91  EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAA--------VWD 142

Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 562
             + ++ E G  LSGGQ+QR+ IAR +   P+++L+DE  SALD  S L ++  + ++  
Sbjct: 143 ECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK 202

Query: 563 NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSN 620
           N T ++V H +     V  +    N + VE G+       GG+   LV    ++ + N
Sbjct: 203 NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGS-------GGKVGYLVEFNETKKIFN 253

Length = 269

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  110 bits (277), Expect = 6e-27
 Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 8/215 (3%)

Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRTLNLR 1078
             + ++L  +     A++G SG GKST +  + R  D      I+G V + G +I   N  
Sbjct: 21   LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80

Query: 1079 S--LRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 1136
               LR+++G+V Q+P  F  +IYEN+ YG   A   +     +A       + + +  + 
Sbjct: 81   VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140

Query: 1137 HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTT 1196
            H+ +  + LSGGQ+QRV IAR +   P ++LLDE TSALD  S   I+  L +L +  T 
Sbjct: 141  HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTI 200

Query: 1197 IMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1230
            I+V H +    R +DK A    G + E    +Q+ 
Sbjct: 201  ILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235

Length = 252

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score =  111 bits (279), Expect = 7e-27
 Identities = 64/216 (29%), Positives = 115/216 (53%), Gaps = 2/216 (0%)

Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           GQ+   ++   Y    + V EN++FS+  G+    +G +GSGKST++S   RL   T G 
Sbjct: 1   GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59

Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 494
           I +DG    S+ L+  R+  G++ Q+  +F+ +   N L      S + + + A+     
Sbjct: 60  IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN-LDPYGKWSDEEIWKVAEEVGLK 118

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
           S +E  P      + +GG  LS G KQ + +AR+VL   KILLLDE ++ LD  +  +++
Sbjct: 119 SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIR 178

Query: 555 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 590
           + L++  ++ T I+  HR+  + +    +V++  +V
Sbjct: 179 KTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKV 214

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  111 bits (278), Expect = 7e-27
 Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 16/196 (8%)

Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069
            ++S  Y  +P     E+++L +++G  + V+G SG GK+T+++L+  F  P  G++ ++G
Sbjct: 8    HLSLSYEGKPRS-ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66

Query: 1070 YDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFIS 1128
               R +      R  G+V Q  AL     + +N+ +G +      + KA +   AH  ++
Sbjct: 67   ---RRIEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLA 118

Query: 1129 RMP-EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1187
             +  EG +        QLSGG +QRV IARA+   P +LLLDE   ALD  +   +QE L
Sbjct: 119  LVGLEGAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175

Query: 1188 DKLME--GRTTIMVAH 1201
              L +  G+  +++ H
Sbjct: 176  LDLWQETGKQVLLITH 191

Length = 259

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  110 bits (276), Expect = 8e-27
 Identities = 77/233 (33%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 1060
            IE  N++  Y    D     N+N+K+      A++G SG GKST +  + R  D      
Sbjct: 8    IETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64

Query: 1061 ISGTVLIDGYDIRTLN--LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKAT 1118
            I G V+ +G +I + N  +  LRRKIG+V Q P  F  +IY+NI YG +     +  K  
Sbjct: 65   IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLD 124

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            +        S +    +  +    + LSGGQ+QR+ IAR +   P+++L+DE TSALD  
Sbjct: 125  EIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPI 184

Query: 1179 SENLIQEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1230
            S   I+E +  L E  T I+V H +    R +D+ A    G + E  S ++L 
Sbjct: 185  STGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237

Length = 254

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score =  109 bits (275), Expect = 8e-27
 Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 30/221 (13%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLR 451
           +   ++ +V  G+  A +G +G+GK+T++  +  L  P SG I  DG D+  L   +  R
Sbjct: 15  ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74

Query: 452 EQMGLVSQEPALFAT-SIANNILLG-------KEDASMDRVIEAAKAANAHSFVEGLPDG 503
             +G V +   +F   ++  N+LLG       K  A ++RV E              P  
Sbjct: 75  AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYEL------------FPRL 122

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ---RALEKI 560
            + +    GT LSGG++Q +AIARA++  PK+LLLDE +  L   +  IV+    A+ ++
Sbjct: 123 KERRKQLAGT-LSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIREL 178

Query: 561 MSNRTTIV-VAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 599
                TI+ V        ++ D   VL+ G+VV  GT  +L
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score =  109 bits (275), Expect = 8e-27
 Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 31/238 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+ N++  Y       I   ++L V  G  +A++G++G+GK+T++  +M    P SG++
Sbjct: 1    LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57

Query: 1066 LIDGYDIRTLNLRS-LRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANA 1123
              DG DI  L      R  IG V +   +F   T+ EN+           L+ A     A
Sbjct: 58   RFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENL-----------LLGAYARRRA 106

Query: 1124 HGFISRMPEGYQ------SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
                +R+   Y+               LSGG++Q +AIARA++  P +LLLDE +  L  
Sbjct: 107  KRK-ARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-- 163

Query: 1178 ASENLIQEALDKLM----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
             +  +++E  + +     EG T ++V          AD+  VL++G+V   G+  +LL
Sbjct: 164  -APKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score =  107 bits (270), Expect = 9e-27
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 63/220 (28%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +ELR ++ ++     +   + ++L V  G   A++G++G+GKST++ ++   Y P SG +
Sbjct: 1    LELRGITKRFG---GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57

Query: 1066 LIDGYDIRTLNLR-SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 1124
            L+DG ++   + R + R  I             +Y                         
Sbjct: 58   LVDGKEVSFASPRDARRAGIA-----------MVY------------------------- 81

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA-SENLI 1183
                               QLS G++Q V IARA+ +N  +L+LDE T+AL  A  E L 
Sbjct: 82   -------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF 122

Query: 1184 QEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1221
             + + +L  +G   I ++HRL  +   AD++ VL+ G+V 
Sbjct: 123  -KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score =  109 bits (274), Expect = 9e-27
 Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 20/211 (9%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKW 449
           V + ++ S+  G+  A VG SGSGKST++ ++  L  PTSG++L +G  L  L   +   
Sbjct: 20  VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79

Query: 450 LR-EQMGLVSQEPALFAT-SIANNI----LLGKEDASMDRVIEAAKAANAHSFVEGLPDG 503
           LR +++G + Q   L    +   N+    L+GK+      V EA + A       GL   
Sbjct: 80  LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS-----VKEAKERAYEMLEKVGLEHR 134

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 563
              +  E    LSGG++QR+AIARA++  P ++L DE T  LD  +  I+   + ++   
Sbjct: 135 INHRPSE----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190

Query: 564 RTT--IVVAHRLSTVRDVDTIMVLKNGQVVE 592
             T  +VV H L   + +D ++ +K+GQ+  
Sbjct: 191 LNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  110 bits (278), Expect = 1e-26
 Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 27/232 (11%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I    + F YP       ++++FSV  G+  A VG +GSGKST+  ++  L  P +G I 
Sbjct: 6   IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65

Query: 437 LDGHDLKSLQLKW-LREQMGLVSQEP--ALFATSIANNILLGKEDASM------DRVIEA 487
           + G  L S +  W +R Q+G+V Q P       ++ +++  G E+  +      +RV +A
Sbjct: 66  VGGMVL-SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124

Query: 488 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD- 546
            +      F+   P            +LSGGQKQR+AIA  +   P I++LDEATS LD 
Sbjct: 125 LRQVGMEDFLNREP-----------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173

Query: 547 ---AESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595
               E    V++  E+     T + + H L      D ++V+  G+++E GT
Sbjct: 174 RGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEGT 223

Length = 279

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score =  109 bits (275), Expect = 1e-26
 Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 9/204 (4%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
            +++F  + G+    +G +G+GK+T++ M+  L  P SGK+ +DG D       ++R ++
Sbjct: 19  RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKI 77

Query: 455 GLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
           G++  E  L+A  +   N+        + R    A+ A     +  L +    +VGE   
Sbjct: 78  GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL-QLLEYLDRRVGE--- 133

Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHR 572
             S G KQ++AIARA++ +P IL+LDE TS LD  +       ++++    R  I  +H 
Sbjct: 134 -FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192

Query: 573 LSTVRDV-DTIMVLKNGQVVESGT 595
           +  V  + D ++VL  G+VV  G+
Sbjct: 193 MQEVEALCDRVIVLHKGEVVLEGS 216

Length = 245

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score =  109 bits (274), Expect = 1e-26
 Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 6/161 (3%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           +  N++FS+ AG+     GPSG GKST++ +V  L  PTSG +L +G D+ +L+ +  R+
Sbjct: 22  ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81

Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
           Q+   +Q P LF  ++ +N++   +     +   A    +   F   LPD   T + +  
Sbjct: 82  QVSYCAQTPTLFGDTVYDNLIFPWQ-IRNQQPDPAIFLDDLERF--ALPD---TILTKNI 135

Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
            +LSGG+KQRI++ R +   PK+LLLDE TSALD  ++  V
Sbjct: 136 AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176

Length = 225

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  110 bits (275), Expect = 1e-26
 Identities = 72/211 (34%), Positives = 116/211 (54%), Gaps = 15/211 (7%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKSLQLK-- 448
           N+N  V  G   A +GPSG GK+T +  + R+++ T     +G+ILLDG D+   ++   
Sbjct: 22  NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81

Query: 449 WLREQMGLVSQEPALFAT-SIANNILLGKEDASM---DRVIEAAKAANAHSFVEGLPDGY 504
            +R ++G+V Q+P  F T S+ +N++ G + A +   D ++E A+ +   +    L D  
Sbjct: 82  AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGA---ALWDEV 138

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564
           + ++    T LSGGQ+QR+ IARA+   P+ILL+DE TSALD  S   ++  +  +    
Sbjct: 139 KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT 198

Query: 565 TTIVVAHRL-STVRDVDTIMVLKNGQVVESG 594
           T I+V H +    R  DT      G +VE G
Sbjct: 199 TIIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229

Length = 252

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score =  110 bits (276), Expect = 2e-26
 Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 21/190 (11%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSLQLK 448
           +++  +   +  AF+GPSG GKST++    R+ +        G+I LDG ++  K + + 
Sbjct: 43  DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102

Query: 449 WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA-KAANAHSFVEGLP 501
            LR ++G+V Q P  F  SI  N++ G           +D  +E + + A        L 
Sbjct: 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGA-------ALW 155

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
           D  + ++ E    LSGGQ+QR+ IARA+   P++LLLDE TSALD  S L ++  + ++ 
Sbjct: 156 DEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK 215

Query: 562 SNRTTIVVAH 571
           S  T ++V H
Sbjct: 216 SKYTIVIVTH 225

Length = 272

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score =  108 bits (273), Expect = 2e-26
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 11/226 (4%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +E + + F Y +R     ++++F+V  G+  A +GP+G+GKST+ S++ RLY    G+I 
Sbjct: 2   LEVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHS 495
           + GHDL+      L  ++G+V Q+P L    S+  N+        + R    A+ A   +
Sbjct: 60  VAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLA 118

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
            + GL +    +V E    L+GG ++R+ IARA+L  P +LLLDE T  LD  S   +  
Sbjct: 119 RL-GLAERADDKVRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITA 173

Query: 556 ALEKIMSNRTTIVV--AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
            +  +  ++   V+   H +  +   D ++VL  G+V+  G   +L
Sbjct: 174 HVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  110 bits (276), Expect = 2e-26
 Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 26/234 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---- 1061
            IE R+++  Y    D    +++++ +   +  A++G SG GKST +  + R  D I    
Sbjct: 40   IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96

Query: 1062 -SGTVLIDGYDIRTLNLR--SLRRKIGLVQQEPALFSTTIYENIKYG------NEDASEI 1112
              G +   G ++   ++   +LRR+IG+V Q+P  F  +IY+N+ YG      + D  E 
Sbjct: 97   VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156

Query: 1113 ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1172
                  +AA        + +  +  +   G+ LSGGQ+QR+ IARAI  +P ++L+DE  
Sbjct: 157  VEESLRRAA--------LWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPA 208

Query: 1173 SALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAV-LQQGKVAEIG 1224
            SALD  + + I++ +++L E  T ++V H +    R +DK AV L  G++ E  
Sbjct: 209  SALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFD 262

Length = 285

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  108 bits (272), Expect = 3e-26
 Identities = 69/214 (32%), Positives = 112/214 (52%), Gaps = 22/214 (10%)

Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PTS---GKILLDGHDL--KSLQ 446
            + ++  ++     AF+GPSG GKST + +  R+ +  P +   G+I +DG ++  K +Q
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78

Query: 447 LKWLREQMGLVSQEPALFATSIANNILLG------KEDASM-DRVIEAAKAANAHSFVEG 499
           +  LR+ +G+V Q P  F  SI  N+  G      K++A +  RV E  K A        
Sbjct: 79  VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGA-------A 131

Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
           L D  + ++ E    LSGGQ+QR+ IARA+  +P +LL+DE  SALD  S   V+  + +
Sbjct: 132 LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191

Query: 560 IMSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVE 592
           +  + T ++V H +    R  D       G++VE
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225

Length = 250

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score =  112 bits (281), Expect = 3e-26
 Identities = 71/215 (33%), Positives = 120/215 (55%), Gaps = 25/215 (11%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE-- 452
           ++ + +++ G+ F  +G SGSGKST++ ++ RL EPT G++L+DG D+  +    LRE  
Sbjct: 45  KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104

Query: 453 --QMGLVSQEPALFA-TSIANNILLGKEDASM------DRVIEAAKAANAHSFVEGLPDG 503
             ++ +V Q  AL    ++ +N   G E A +      ++ ++A +     ++    PD 
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD- 163

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS- 562
                     +LSGG +QR+ +ARA+  NP ILL+DEA SALD      +Q  L K+ + 
Sbjct: 164 ----------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213

Query: 563 -NRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGT 595
             RT + ++H L   +R  D I +++NG+VV+ GT
Sbjct: 214 HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248

Length = 400

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score =  109 bits (274), Expect = 3e-26
 Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 24/192 (12%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDL--KSLQLK 448
           +++  +      AF+GPSG GKST +  + R+ +       +GKI LDG D+    L + 
Sbjct: 37  DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96

Query: 449 WLREQMGLVSQEPALFATSIANNILLG-------KEDASMDRVIEAA--KAANAHSFVEG 499
            LR ++G+V Q+P  F  SI  N+  G       +  A +D ++E +  KA        G
Sbjct: 97  ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKA--------G 148

Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
           L +  + ++ E GT LSGGQ+QR+ IARA+  +P+++L+DE  SALD  +   V+  +++
Sbjct: 149 LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208

Query: 560 IMSNRTTIVVAH 571
           +  N T ++V H
Sbjct: 209 LRQNYTIVIVTH 220

Length = 267

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score =  108 bits (271), Expect = 3e-26
 Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 20/214 (9%)

Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--- 1076
            D  + + ++L +  G  +A+VG SGSGKST++ L+    +P SG VL +G  +  L+   
Sbjct: 17   DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76

Query: 1077 LRSLR-RKIGLVQQEPALFST-TIYENIKY----GNEDASEIELMKATKAANAHGFISRM 1130
               LR +K+G + Q   L    T  EN+      G +   E +  +A +     G   R+
Sbjct: 77   RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-ERAYEMLEKVGLEHRI 135

Query: 1131 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1190
                 +H   R  +LSGG++QRVAIARA++  PS++L DE T  LD  +  +I + + +L
Sbjct: 136  -----NH---RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187

Query: 1191 MEGRTT--IMVAHRLSTIRNADKIAVLQQGKVAE 1222
                 T  ++V H L   +  D++  ++ G++  
Sbjct: 188  NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  116 bits (293), Expect = 4e-26
 Identities = 71/259 (27%), Positives = 134/259 (51%), Gaps = 35/259 (13%)

Query: 989  IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS 1048
            ++P  PA          I ++N  F +  + +     N+NL V  G  +A+VG +G GK+
Sbjct: 608  LEPGLPA----------ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657

Query: 1049 TVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE- 1107
            ++IS ++    P S   ++            +R  +  V Q   +F+ T+ +NI +G+  
Sbjct: 658  SLISAMLGELPPRSDASVV------------IRGTVAYVPQVSWIFNATVRDNILFGSPF 705

Query: 1108 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 1167
            D    E  +A         +  +P G  + +G+RGV +SGGQKQRV++ARA+  N  + +
Sbjct: 706  DPERYE--RAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYI 763

Query: 1168 LDEATSALDTASENLIQEALDKL----MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1223
             D+  SALD    ++ ++  DK     + G+T ++V ++L  +   D+I ++ +G + E 
Sbjct: 764  FDDPLSALDA---HVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820

Query: 1224 GSHEQLLRKENG-IYKQLI 1241
            G++E+L    NG ++++L+
Sbjct: 821  GTYEELSN--NGPLFQKLM 837

Length = 1622

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  108 bits (272), Expect = 4e-26
 Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 41/248 (16%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---- 1061
            +E++++S  Y  +  +    ++++ +      A++G SG GKST +  + R  D I    
Sbjct: 22   LEVKDLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78

Query: 1062 -SGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENI----KYGNE------- 1107
              G +L +G +I    +N+ +LRR+IG+V Q+P  F  +IY NI    KY  E       
Sbjct: 79   SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138

Query: 1108 DASEIELMKATKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNP 1163
            +  E  L   TKAA                V DR     + LSGGQ+QR+ IAR +   P
Sbjct: 139  EIVEESL---TKAA------------LWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKP 183

Query: 1164 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAE 1222
            ++LLLDE  SALD  S   I+E + +L E  + I+V H +   +R +D+ A    G + E
Sbjct: 184  AVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243

Query: 1223 IGSHEQLL 1230
                EQ+ 
Sbjct: 244  YDQTEQIF 251

Length = 268

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score =  111 bits (278), Expect = 5e-26
 Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 25/237 (10%)

Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP--I 1061
            G I + ++   Y      T+ ++L+L++ AG  LA++G+SG GK+T++  +  F     +
Sbjct: 4    GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60

Query: 1062 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA 1120
            +G + I   D+   +    +R + L+ Q  ALF    + +N+ +G       +   A + 
Sbjct: 61   TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118

Query: 1121 ANAHGFISRMPEGYQSHVGDRGV----QLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
            A+A   +          +GD       QLSGG +QR+AIARAI   P +LLLDE  SALD
Sbjct: 119  ADALKLVG---------LGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALD 169

Query: 1177 TASENLIQEALDKLME---GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
                  ++E +  L E     T + V H +   +  ADK  +++ G++A  G  + L
Sbjct: 170  ANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  109 bits (273), Expect = 5e-26
 Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 34/247 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFE-----NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060
            I L+NVS+ Y      T FE     ++NL +  G   A +G +GSGKST++ L+   + P
Sbjct: 3    INLQNVSYTYQAG---TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59

Query: 1061 ISGTVLIDGYDIRTL----NLRSLRRKIGLVQQ--EPALFSTTIYENIKYG-------NE 1107
              G+V +D   I +     +++ +R+K+GLV Q  E  LF  T+ +++ +G        E
Sbjct: 60   TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQE 119

Query: 1108 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 1167
            +A  +   K      +     + P            +LSGGQ +RVAIA  +   P IL+
Sbjct: 120  EAEALAREKLALVGISESLFEKNP-----------FELSGGQMRRVAIAGILAMEPKILV 168

Query: 1168 LDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225
            LDE T+ LD      +     KL + G T ++V H +  + N AD + VL++GK+   G 
Sbjct: 169  LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228

Query: 1226 HEQLLRK 1232
             + + + 
Sbjct: 229  PKDIFQD 235

Length = 280

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score =  108 bits (272), Expect = 5e-26
 Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 20/216 (9%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--K 443
               +N+N  +   +  A +GPSG GKST I  + R+ E      T+GKIL    ++  K
Sbjct: 37  DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96

Query: 444 SLQLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFV 497
           S  ++ LR  +G+V Q+P  F  SI +N+  G      K+  ++D ++E +    A    
Sbjct: 97  SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAA---- 152

Query: 498 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 557
             + D  + ++ +    LSGGQ+QR+ IAR +   P ++L+DE TSALD  S L V+  +
Sbjct: 153 --IWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELV 210

Query: 558 EKIMSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVE 592
           +++  + + I+V H +    R  D      NG V E
Sbjct: 211 QELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246

Length = 271

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  108 bits (271), Expect = 5e-26
 Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 40/232 (17%)

Query: 390 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK------ 443
            H V + ++   +AG   + +G SGSGKST +  +  L +P++G I ++G +++      
Sbjct: 18  EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKD 77

Query: 444 -------SLQLKWLREQMGLVSQEPALFA--TSIANNI-----LLGKEDASMDRVIEAAK 489
                    QL+ LR ++G+V Q   L++  T + N I     +LG    S    IE A+
Sbjct: 78  GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV---SKAEAIERAE 134

Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
              A   +    D Y          LSGGQ+QR+AIARA+   P+++L DE TSALD E 
Sbjct: 135 KYLAKVGIAEKADAYPAH-------LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE- 186

Query: 550 ELIVQRALEKIMSN-----RTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGT 595
             +V   L K+M +     RT +VV H +   RDV + ++ L  G++ E G 
Sbjct: 187 --LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235

Length = 256

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  116 bits (291), Expect = 6e-26
 Identities = 75/259 (28%), Positives = 136/259 (52%), Gaps = 22/259 (8%)

Query: 989  IQPDDPASKEVTEIKGN-IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGK 1047
            ++PD    + +   +GN I + N +F +  R        +   +  G  +AVVGQ G GK
Sbjct: 619  LEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGK 677

Query: 1048 STVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE 1107
            S+++S ++   D + G V + G              +  V Q+  + + ++ ENI +G  
Sbjct: 678  SSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGK- 723

Query: 1108 DASEIELMKATKAANAH-GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 1166
             A   +  +    A A    +  +P G ++ +G++GV LSGGQKQRV++ARA+  N  I 
Sbjct: 724  -ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782

Query: 1167 LLDEATSALDTASENLIQEAL---DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1223
            L D+  SA+D      I E +   + +++ +T I+V H +S +   D I V+  GK++E+
Sbjct: 783  LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM 842

Query: 1224 GSHEQLLRKENGIYKQLIR 1242
            GS+++LL++ +G + + +R
Sbjct: 843  GSYQELLQR-DGAFAEFLR 860

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score =  111 bits (279), Expect = 6e-26
 Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 43/225 (19%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450
             V  NL+ +++ G+    +GPSG GK+T++ ++     P SG+I+LDG D+  +  +  
Sbjct: 27  KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE-- 84

Query: 451 REQMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDG 503
              +  V Q  ALF   ++  N+  G             RV+EA +      F +  P  
Sbjct: 85  NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-- 142

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ESEL-IVQRA 556
                     QLSGGQ+QR+AIARAV+  PK+LLLDE+ SALD       ++EL  +QR 
Sbjct: 143 ---------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRK 193

Query: 557 LEKIMSNRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGT 595
           L       T + V H       +S     D I+V+++G++ + GT
Sbjct: 194 L-----GITFVFVTHDQEEALTMS-----DRIVVMRDGRIEQDGT 228

Length = 375

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (269), Expect = 7e-26
 Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 28/217 (12%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSLQLK 448
           ++N  +   K  A +GPSG GKST +  + R+ +        G++LLDG ++  K + + 
Sbjct: 22  DINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81

Query: 449 WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA--KAANAHSFVEGL 500
            LR+++G+V Q+P  F  SI +N+  G      K+   +D+++E A  KAA        L
Sbjct: 82  ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA--------L 133

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
            D  +  + +   +LSGGQ+QR+ IAR +   P ++L+DE TSALD  S L ++  + ++
Sbjct: 134 WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193

Query: 561 MSNRTTIVVAHRL---STVRDVDTIMVLKNGQVVESG 594
               T ++V H +   S V D     ++  G ++E  
Sbjct: 194 KKEYTIVIVTHNMQQASRVSDYTAFFLM--GDLIEFN 228

Length = 251

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  108 bits (271), Expect = 7e-26
 Identities = 80/262 (30%), Positives = 118/262 (45%), Gaps = 33/262 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE R++ + Y          N+N        +AV+G +G+GKST+         P SG+V
Sbjct: 4    IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG------NEDASEIELMKA 1117
            LI G  I   N+R +R+ +GLV Q P   +FS T+ ++I +G      +E+     +  A
Sbjct: 62   LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
                       R+P             LSGG+K+RVAIA  I   P +L+LDE T+ LD 
Sbjct: 122  LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170

Query: 1178 ASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQ------QGKVAEIGSHEQ 1228
                 + + L+ L E  G T I   H+L  +   AD I V+        G V EI     
Sbjct: 171  QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230

Query: 1229 LLRK---ENGIYKQLIRLQQDK 1247
            LL +   +     +LIR  Q +
Sbjct: 231  LLARVHLDLPSLPKLIRSLQAQ 252

Length = 277

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score =  110 bits (276), Expect = 7e-26
 Identities = 80/247 (32%), Positives = 128/247 (51%), Gaps = 36/247 (14%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + L+N++ ++      T+ +NLNL +  G  + ++G SG GK+TV+ LV     P  G +
Sbjct: 7    VVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63

Query: 1066 LIDGYDIRTLNLRSLR-RKIGLVQQEPALFS-TTIYENIKYG----NEDASEIE--LMKA 1117
             IDG D+     RS++ R I +V Q  ALF   ++ EN+ YG         E +  + +A
Sbjct: 64   FIDGEDVTH---RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEA 120

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
             +  +  GF             DR V Q+SGGQ+QRVA+ARA++  P +LL DE  S LD
Sbjct: 121  LELVDLAGF------------EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168

Query: 1177 TASENLIQEALDKLME-----GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLL 1230
                NL +   +K+ E       T++ V H  S     +D + V+ +GK+ +IGS ++L 
Sbjct: 169  A---NLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225

Query: 1231 RKENGIY 1237
            R+    +
Sbjct: 226  RQPASRF 232

Length = 351

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score =  108 bits (271), Expect = 7e-26
 Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 18/198 (9%)

Query: 1038 AVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDIRT--LNLRSLRRKIGLVQQE 1090
            A++G SGSGKST +  + R  D I     +G +L  G DI    +N+  +R+ IG+V Q 
Sbjct: 50   ALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQR 109

Query: 1091 PALFSTTIYENIKY-----GNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQL 1145
            P  F+ +IYENI +     G +D   ++ +  T    A      + +  +  +    + L
Sbjct: 110  PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA-----ALWDQVKDDLHKSALTL 164

Query: 1146 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLS- 1204
            SGGQ+QR+ IARAI   P ILL+DE  SALD  S   ++E + +L +  T I+V H +  
Sbjct: 165  SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ 224

Query: 1205 TIRNADKIAVLQQGKVAE 1222
              R +D  A    G + E
Sbjct: 225  AARASDYTAFFYLGDLIE 242

Length = 267

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score =  113 bits (284), Expect = 8e-26
 Identities = 72/267 (26%), Positives = 130/267 (48%), Gaps = 43/267 (16%)

Query: 1006 IELRNVSFKYPVRP--------DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 1057
            +E+ ++   +P++          +   + ++L +  G++L +VG+SGSGKST+   ++R 
Sbjct: 277  LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336

Query: 1058 YDPISGTVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST---------TIYENIKYG 1105
              P  G +  DG DI  L+   +R LRR++ +V Q+P  + +          I E ++  
Sbjct: 337  -IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVH 393

Query: 1106 NEDASEIELMKATKAA-NAHGF----ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160
                S  E  +    A    G      +R P            + SGGQ+QR+AIARA++
Sbjct: 394  EPKLSAAERDQRVIEALEEVGLDPATRNRYPH-----------EFSGGQRQRIAIARALI 442

Query: 1161 KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQ 1217
              P ++LLDE TSALD + +  + + L  L +  G + + ++H L+ +R    ++ V++ 
Sbjct: 443  LKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502

Query: 1218 GKVAEIGSHEQLLRKENGIY-KQLIRL 1243
            GK+ E G  E +       Y + L+  
Sbjct: 503  GKIVEQGPTEAVFANPQHEYTRALLAA 529

Length = 534

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score =  115 bits (289), Expect = 9e-26
 Identities = 97/319 (30%), Positives = 156/319 (48%), Gaps = 42/319 (13%)

Query: 353 IKENSHSSERP-GDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVG 411
           IK+N+ + ++P GDDG+          FS   F+    P  V +N++F ++ G+  A  G
Sbjct: 413 IKQNNKARKQPNGDDGLF---------FSN--FSLYVTP--VLKNISFKLEKGQLLAVAG 459

Query: 412 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 471
            +GSGKS+++ M+    EP+ GKI   G    S Q  W+                +I +N
Sbjct: 460 STGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWI-------------MPGTIKDN 506

Query: 472 ILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529
           I+ G    S D  R     KA      +   P+  +T +GEGG  LSGGQ+ RI++ARAV
Sbjct: 507 IIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV 563

Query: 530 LRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG 588
            ++  + LLD   + LD  +E  I +  L K+MSN+T I+V  +L  ++  D I++L  G
Sbjct: 564 YKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEG 623

Query: 589 QVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEF 648
                GT  +L +K  ++++L  L   E   N     +S   R S   +  + RR  ++ 
Sbjct: 624 VCYFYGTFSELQAKRPDFSSL--LLGLEAFDN-----FSAERRNSILTE--TLRRVSIDG 674

Query: 649 ESSKRRELQSSDQSFAPSP 667
           +S+     ++  QSF   P
Sbjct: 675 DSTVFSGPETIKQSFKQPP 693

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score =  106 bits (267), Expect = 1e-25
 Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 29/226 (12%)

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456
            + +V AG+  A +GPSG+GKST+++++     P SG+IL++G D  +         + +
Sbjct: 18  FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75

Query: 457 VSQEPALFA-TSIANNILLG-----KEDAS-MDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
           + QE  LFA  ++A NI LG     K +A   ++V  AA       F++ LP        
Sbjct: 76  LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-------- 127

Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD----AES-ELIVQRALEKIMSNR 564
               +LSGGQ+QR+A+AR ++R   ILLLDE  SALD    AE   L+ Q   E+ M   
Sbjct: 128 ---GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKM--- 181

Query: 565 TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAAL 609
           T ++V H       + D ++ L NG++   G+  +L+S     AAL
Sbjct: 182 TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKASAAAL 227

Length = 231

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  107 bits (270), Expect = 1e-25
 Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 38/238 (15%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +E  ++ ++YP       + +NF  + G+  A +GP+G+GKST+      + +PTSG++L
Sbjct: 2   LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60

Query: 437 LDG----HDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLG------KEDASMDRV 484
           + G    +D KSL L+ +R+ +G+V Q P   LFA ++  ++  G       ++    RV
Sbjct: 61  IKGEPIKYDKKSL-LE-VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118

Query: 485 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544
            EA KA     F    P             LSGGQK+R+AIA  +   P+I++LDE TS 
Sbjct: 119 KEALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167

Query: 545 LDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVD-------TIMVLKNGQVVESGT 595
           LD      + + L  +     TI++    ST  DVD        + V+ +G++++ GT
Sbjct: 168 LDPMGASQIMKLLYDLNKEGITIII----ST-HDVDLVPVYADKVYVMSDGKIIKEGT 220

Length = 275

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score =  109 bits (275), Expect = 1e-25
 Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 35/225 (15%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQLK 448
           + V +NLN ++  G     +GPSG GK+T++ +V  L +PT G+I +DG D+  +S+Q  
Sbjct: 19  NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ-- 76

Query: 449 WLREQMGLVSQEPALFA-TSIANNI-----LLGKEDASM-DRVIEAAKAANAHSFVEGLP 501
             +  + +V Q  ALF   S+  N+     +LG        RV EA +  +    + G  
Sbjct: 77  --QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVD----LAGFE 130

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL-EKI 560
           D Y  Q+       SGGQ+QR+A+ARA++  PK+LL DE  S LDA     ++R++ EKI
Sbjct: 131 DRYVDQI-------SGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKI 179

Query: 561 MS-----NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 599
                  N T++ V H  S    V DT++V+  G++++ G+  +L
Sbjct: 180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224

Length = 351

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  107 bits (270), Expect = 1e-25
 Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 12/233 (5%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---G 433
           +EF  V F YP        +++FS+  G   A +G +GSGKSTI  ++  L  P      
Sbjct: 6   VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65

Query: 434 KILLDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAA 491
           KI +DG  L +  +  +RE++G+V Q P       ++ +++  G E+ ++ R        
Sbjct: 66  KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVR 125

Query: 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
           +  + V G+ D   ++       LSGGQKQR+AIA  +   PKI++LDE+TS LD   + 
Sbjct: 126 DVLADV-GMLDYIDSE----PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180

Query: 552 IVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602
            + + + K+   +N T I + H +      D ++VL +G+++  G+ V++ SK
Sbjct: 181 QILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233

Length = 282

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (268), Expect = 1e-25
 Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 26/238 (10%)

Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF---YDP---ISG 1063
            N+S  Y    D  I +++ +K+       ++G SGSGKST++ ++ R    YD    + G
Sbjct: 12   NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKY-----GNEDASEIELMKA 1117
             VL  G DI  ++   LR+++G+V Q+P  F   +IY+NI Y     G ++  EI+ +  
Sbjct: 72   KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE 131

Query: 1118 TKAANAHGFISRMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
                           G    V DR      QLSGGQ+QR+ IARA+   P +LL+DE TS
Sbjct: 132  E---------CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182

Query: 1174 ALDTASENLIQEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1230
             +D  +   I++ + +L      ++V+H    + R AD +A L  G++ E GS  ++ 
Sbjct: 183  MIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240

Length = 257

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  108 bits (271), Expect = 1e-25
 Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 21/226 (9%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-----GTVLIDGYDI--RTLNL 1077
            + +++ +      A++G SG GKST +  + R  D I      G+V +DG DI    +NL
Sbjct: 62   KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121

Query: 1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIE------LMKATKAANAHGFISR-- 1129
              LR+++G+V Q P  F  +I ENI YG     +I       L+           + R  
Sbjct: 122  VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181

Query: 1130 ----MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
                + +     + D  + LSGGQ+QR+ IAR +  +P ++L+DE  SALD  + + I++
Sbjct: 182  RQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED 241

Query: 1186 ALDKLMEGRTTIMVAHRL-STIRNADKIAV-LQQGKVAEIGSHEQL 1229
             +++L E  T ++V H +    R +D+ AV L  G++ E    +++
Sbjct: 242  LIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKI 287

Length = 305

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (268), Expect = 1e-25
 Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 20/223 (8%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-----GTVLIDGYDIRT--LNLR 1078
            ++ + +   R  A++G SG GKST++    R  D I      G +L +G +I     ++ 
Sbjct: 24   DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83

Query: 1079 SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA------HGFISRMPE 1132
            +LRRKIG+V Q P  F  +IYEN+ YG      I   K  K  +        G  + + +
Sbjct: 84   ALRRKIGMVFQRPNPFPKSIYENVAYG----PRIHGEKNKKTLDTIVEKSLKG--AALWD 137

Query: 1133 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1192
              +  + D  + LSGGQ+QR+ IAR +  NP ++L+DE  SALD  +   I++ ++ L +
Sbjct: 138  EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197

Query: 1193 GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
              T I+V H +    R +D    +  GK+ E     Q+    +
Sbjct: 198  EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240

Length = 253

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (267), Expect = 1e-25
 Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 22/241 (9%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-- 433
           +I+   V F Y    H V +N+N      +  A +GPSG GKST++  + R+ +  SG  
Sbjct: 4   KIKIRGVNFFY--HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61

Query: 434 ---KILLDGHDLKS--LQLKWLREQMGLVSQEPALFATSIANNILLGKE------DASMD 482
               +LLD  ++ S  L +  LR+++G+V Q+P  F  SI +N+  G         + +D
Sbjct: 62  LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121

Query: 483 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542
            V+E +    A      L D  +  + + G  LSGGQ+QR+ IAR +   P+++L+DE  
Sbjct: 122 EVVEKSLRQAA------LWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175

Query: 543 SALDAESELIVQRALEKIMSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGTHVDLIS 601
           SALD  S + ++  ++++  N T  +V H +    R  D    L  G +VE G   ++ S
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235

Query: 602 K 602
           +
Sbjct: 236 R 236

Length = 251

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score =  107 bits (270), Expect = 1e-25
 Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 26/234 (11%)

Query: 377 IEFSEVCFAY----PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
           I+   V + Y     S   +  +++N  V  G+    +G +GSGKSTI   +  L  P+ 
Sbjct: 5   IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64

Query: 433 GKILLDGHDLKSLQLKW-LREQMGLVSQEP--ALFATSIANNILLGKEDASMD------R 483
           GK+ +DG D    +  W +R + G+V Q P   + AT +  ++  G E+  +       R
Sbjct: 65  GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124

Query: 484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
           V E+ K    + +    P             LSGGQKQR+AIA  +   P+ ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173

Query: 544 ALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595
            LD      V   ++++      T I++ H +    + D I+V+ +G+VV  GT
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227

Length = 280

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score =  107 bits (269), Expect = 1e-25
 Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 19/221 (8%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           V +N+N  ++ G+  A  G +GSGK++++ ++    EP+ GKI   G    S Q  W+  
Sbjct: 52  VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI-- 109

Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 510
                         +I  NI+ G    S D  R     KA      +   P+   T +GE
Sbjct: 110 -----------MPGTIKENIIFG---VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155

Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 569
           GG  LSGGQ+ RI++ARAV ++  + LLD     LD  +E  I +  + K+M+N+T I+V
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215

Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 610
             ++  ++  D I++L  G     GT  +L S   ++++ +
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score =  108 bits (273), Expect = 2e-25
 Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 17/207 (8%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
           +++ SV  G+    +GPSG GK+T++ ++  L   T+G I   G D+  L  +  +   G
Sbjct: 22  DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79

Query: 456 LVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514
           +V Q  ALF   ++A+NI  G ++  M R   A + A     V GLP   +   G    Q
Sbjct: 80  IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-GLPGSERKYPG----Q 134

Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAH- 571
           LSGGQ+QR+A+ARA+  +P +LLLDE  SALDA     ++  + ++      TTI+V H 
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194

Query: 572 ---RLSTVRDVDTIMVLKNGQVVESGT 595
               LS     D I+V+ +G + + GT
Sbjct: 195 QEEALSM---ADRIVVMNHGVIEQVGT 218

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score =  109 bits (274), Expect = 2e-25
 Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 30/248 (12%)

Query: 994  PASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISL 1053
            P +K    +   +E+RN++  +  +  +   ++++L +  G   A++G SG GKST++ +
Sbjct: 8    PQAKTRKALTPLLEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRM 64

Query: 1054 VMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG------- 1105
            +  F  P +G +++DG D+   ++   +R I ++ Q  ALF   T+ +NI +G       
Sbjct: 65   LAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP 122

Query: 1106 -NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 1164
              E AS +  M      +   F  R P            QLSGGQ+QRVA+AR++ K P 
Sbjct: 123  KAEIASRVNEMLGL--VHMQEFAKRKPH-----------QLSGGQRQRVALARSLAKRPK 169

Query: 1165 ILLLDEATSALDTASENLIQ-EALDKLME-GRTTIMVAH-RLSTIRNADKIAVLQQGKVA 1221
            +LLLDE   ALD    + +Q E +D L   G T +MV H +   +  A +IA++ +GK  
Sbjct: 170  LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229

Query: 1222 EIGSHEQL 1229
            +IG  E++
Sbjct: 230  QIGEPEEI 237

Length = 377

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =  106 bits (266), Expect = 2e-25
 Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 38/225 (16%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
           +++  V  G+    +GP+G+GK+T+ +++   Y+P+SG ++  G D+  L       ++G
Sbjct: 22  DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARLG 80

Query: 456 LVS--QEPALFAT-SIANNILLG------------------KEDASMDRVIEAAKAANAH 494
           +    Q   LF   ++  N+ +G                  +E  + +R  E  +     
Sbjct: 81  IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE----- 135

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELIV 553
            FV GL +      G     LS GQ++R+ IARA+   PK+LLLDE  + L+  E+E + 
Sbjct: 136 -FV-GLGELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189

Query: 554 QRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           +  + ++      T +++ H +  V  + D I+VL  G+V+  GT
Sbjct: 190 EL-IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233

Length = 250

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score =  105 bits (265), Expect = 2e-25
 Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 27/221 (12%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-----LLDGHDLKSL 445
             V   ++  V  G+  A +GPSGSGK+T++  +  L +P +G I      +D     S 
Sbjct: 16  QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75

Query: 446 Q---LKWLREQMGLVSQEPALFA-TSIANNILLGK---EDASMDRVIEAAKAANAHSFVE 498
           Q   ++ LR+ +G V Q   LF   ++  NI+ G    +    +     A+   A   + 
Sbjct: 76  QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA 135

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
           G    Y  +       LSGGQ+QR+AIARA+   P+++L DE TSALD E   +V   L 
Sbjct: 136 GKETSYPRR-------LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLN 185

Query: 559 KIMS----NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
            I       RT ++V H +S  RDV D  + +  G++VE G
Sbjct: 186 TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226

Length = 250

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  107 bits (268), Expect = 3e-25
 Identities = 78/263 (29%), Positives = 137/263 (52%), Gaps = 31/263 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFE-----NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060
            I   NVS+ Y      T +E     ++N +   G+  A+VGQ+GSGKST+I  +     P
Sbjct: 3    IRFDNVSYTYQ---KGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP 59

Query: 1061 ISGTVLIDGYDI----RTLNLRSLRRKIGLVQQ--EPALFSTTIYENIKYGNED-ASEIE 1113
             +GTV +D   I    +   +R +R++IG+V Q  E  LF  T+   I +G ++    ++
Sbjct: 60   TTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD 119

Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRG-VQLSGGQKQRVAIARAILKNPSILLLDEAT 1172
             +K      AH  +  M  G+   V  +   Q+SGGQ +++AI   +  NP I++LDE T
Sbjct: 120  EVKN----YAHRLL--MDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPT 173

Query: 1173 SALDTASENLIQEALDKLM--EGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQL 1229
            + LD  S+  +   L  L   E +T I+V+H ++ + R AD++ V+++G +    S ++L
Sbjct: 174  AGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233

Query: 1230 LRKENGIYK------QLIRLQQD 1246
             + +  +        ++++LQ D
Sbjct: 234  FKDKKKLADWHIGLPEIVQLQYD 256

Length = 286

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score =  104 bits (262), Expect = 3e-25
 Identities = 63/216 (29%), Positives = 110/216 (50%), Gaps = 17/216 (7%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            ++L+NV +         I  N++  + AG    + G SG GKST++ +V     P SGT+
Sbjct: 8    LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
            L +G DI TL     R+++    Q P LF  T+Y+N+ +  +  ++              
Sbjct: 65   LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD----- 119

Query: 1126 FISR--MPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
             + R  +P+     +  + + +LSGG+KQR+++ R +   P +LLLDE TSALD ++++ 
Sbjct: 120  DLERFALPD----TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175

Query: 1183 IQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQ 1216
            + E + + +       + V H    I +ADK+  LQ
Sbjct: 176  VNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211

Length = 225

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score =  104 bits (262), Expect = 3e-25
 Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 24/210 (11%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           V ++++  V  G+ + F+GP+G+GK+T + ++  L +P SG+I  DG   +         
Sbjct: 15  VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL--R 72

Query: 453 QMGLVSQEPALFATSIA-NNI-----LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 506
           ++G + + P  +    A  N+     LLG     +D V++          V GL D  + 
Sbjct: 73  RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD----------VVGLKDSAKK 122

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 566
           +V       S G KQR+ IA A+L NP +L+LDE T+ LD +    ++  +  +     T
Sbjct: 123 KVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178

Query: 567 IVVA-HRLSTVRDV-DTIMVLKNGQVVESG 594
           ++++ H LS ++ V D I ++  G+++E G
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score =  104 bits (262), Expect = 3e-25
 Identities = 54/217 (24%), Positives = 108/217 (49%), Gaps = 28/217 (12%)

Query: 389 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL--- 445
                 ++++FSV+ G+ F  +GP+G+GK+T I M+  +  P SG++L DG  L      
Sbjct: 11  GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARN 70

Query: 446 QLKWLREQMGLVS----QEPALFATSIANNILLGKEDA--SMDRVIEAAKAANAHSFVEG 499
           ++ +L E+ GL       +  ++   +     L KE+A   +D  +E  + +        
Sbjct: 71  RIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSE------- 120

Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
               Y  +  E   +LS G +Q++    AV+ +P++L+LDE  S LD  +  +++  + +
Sbjct: 121 ----YANKRVE---ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173

Query: 560 IMSNRTTIV-VAHRLSTVRDV-DTIMVLKNGQVVESG 594
           +     T++   H++  V ++ D +++L  G+ V  G
Sbjct: 174 LARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  106 bits (267), Expect = 3e-25
 Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 34/252 (13%)

Query: 1006 IELRNVSFKY-PVRPDITI-FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            I+  NV + Y P  P      +N++ ++  G  +A+VG +GSGKST++        P SG
Sbjct: 3    IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62

Query: 1064 TVLIDGYDIR----TLNLRSLRRKIGLVQQ--EPALFSTTIYENIKYG------NEDASE 1111
            T+ I GY I       NL+ LR+K+ LV Q  E  LF  T+ +++++G      +ED ++
Sbjct: 63   TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122

Query: 1112 IELMKATKAAN-AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
             + +K  K    +   IS+ P            +LSGGQ +RVAIA  +   P IL LDE
Sbjct: 123  EKALKWLKKVGLSEDLISKSP-----------FELSGGQMRRVAIAGVMAYEPEILCLDE 171

Query: 1171 ATSALDTAS-ENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKV------AE 1222
              + LD    + ++Q   D    G T I+V H +  +   AD + VL+ GK+       E
Sbjct: 172  PAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231

Query: 1223 IGSHEQLLRKEN 1234
            I S ++ L+K  
Sbjct: 232  IFSDKEWLKKHY 243

Length = 287

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score =  105 bits (264), Expect = 3e-25
 Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 25/236 (10%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           + FS+V   +      V + LNFSV AG+  A +GPSGSGKSTI+ ++  L     G+I 
Sbjct: 1   VRFSDVTKRF--GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58

Query: 437 LDGHDLKSLQ-------------LKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMD 482
           ++G  L  +              L+ +R ++G+V Q   LF   ++ +N+      A + 
Sbjct: 59  VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE----APV- 113

Query: 483 RVIEAAKAANAHSFVEGLPD-GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 541
            V+  A+A      +E L   G   +      QLSGGQ+QR+AIARA+   PK++L DE 
Sbjct: 114 LVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173

Query: 542 TSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
           TSALD E    V   + ++ S  + T ++V H +   R+  D +     G++VE G
Sbjct: 174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQG 229

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  113 bits (284), Expect = 4e-25
 Identities = 71/217 (32%), Positives = 116/217 (53%), Gaps = 23/217 (10%)

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456
           + FS+  G   A VG  G GKS+++S +    +   G + + G              +  
Sbjct: 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAY 703

Query: 457 VSQEPALFATSIANNILLGK--EDASMDRVIEA-AKAANAHSFVEGLPDGYQTQVGEGGT 513
           V Q+  +   S+  NIL GK   +    +V+EA A   +    +E LP G +T++GE G 
Sbjct: 704 VPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPD----LEILPSGDRTEIGEKGV 759

Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRAL--EKIMSNRTTIVVA 570
            LSGGQKQR+++ARAV  N  I L D+  SA+DA   + I +  +  E ++ N+T I+V 
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819

Query: 571 HRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 607
           H +S +  VD I+V+  G++ E G++ +L+ + G +A
Sbjct: 820 HGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFA 856

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score =  106 bits (265), Expect = 4e-25
 Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 21/220 (9%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PT---SGKILLDGHDLKSL 445
            +  +N+   +   +  AF+GPSG GKSTI+    RL +  P     GK+   G +L + 
Sbjct: 23  FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82

Query: 446 QLK--WLREQMGLVSQEPALFATSIANNILLGKE----DASMDRVIEAA--KAANAHSFV 497
            +    +R ++G+V Q+P  F  SI +NI  G         MD ++E +  +AA      
Sbjct: 83  DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAA------ 136

Query: 498 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 557
             L D  + ++ + G  LSGGQ+QR+ IARA+   P+++L+DE  SALD  S L ++  +
Sbjct: 137 --LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM 194

Query: 558 EKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHV 597
            ++    T I+V H +     V  +    N ++ E G   
Sbjct: 195 HELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRY 234

Length = 264

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score =  113 bits (284), Expect = 5e-25
 Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 2/228 (0%)

Query: 374  AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
            AG + F  V   Y     +V   ++F +   +    VG +GSGKST++    R+ E   G
Sbjct: 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG 1365

Query: 434  KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 493
            +I ++G ++ +  L+ LR Q  ++ Q+P LF  ++  N+    E AS   V  A +    
Sbjct: 1366 EIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE-ASSAEVWAALELVGL 1424

Query: 494  HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL-RNPKILLLDEATSALDAESELI 552
               V    +G  ++V EGG+  S GQ+Q + +ARA+L +    +L+DEAT+ +D   +  
Sbjct: 1425 RERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQ 1484

Query: 553  VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI 600
            +Q  +    S  T I +AHRL TV   D I+V+ +G V E G+  +L+
Sbjct: 1485 IQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532

Length = 1560

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score =  110 bits (278), Expect = 5e-25
 Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 42/231 (18%)

Query: 388 SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL-- 445
                  + ++ ++  G+T   VG SGSGKST+   + RL     G+I  DG D+  L  
Sbjct: 297 VDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDIDGLSR 355

Query: 446 -QLKWLREQMGLVSQEPALFAT-----SIANNILLG--------KEDASMDRVIEAAKAA 491
            +++ LR +M +V Q+P  + +     ++   I  G               RVIEA +  
Sbjct: 356 KEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV 413

Query: 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
                  GL             + SGGQ+QRIAIARA++  P+++LLDE TSALD     
Sbjct: 414 -------GLD---PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD----R 459

Query: 552 IVQ-------RALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
            VQ       R L++     + + ++H L+ VR +   ++V+++G++VE G
Sbjct: 460 SVQAQVLDLLRDLQQ-KHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509

Length = 534

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score =  110 bits (277), Expect = 5e-25
 Identities = 74/263 (28%), Positives = 123/263 (46%), Gaps = 38/263 (14%)

Query: 1006 IELRNVSFKYPVR-PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--YDPI- 1061
            + +RN+S  +      +   + ++  + AG +LA+VG+SGSGKS     ++         
Sbjct: 7    LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66

Query: 1062 --SGTVLIDGYDIRTLNLRSLRR----KIGLVQQEP--AL-----FSTTIYENIKY---- 1104
              SG++L DG D+   + R LR     KIG++ QEP  +L         + E ++     
Sbjct: 67   HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL 126

Query: 1105 GNEDASE--IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162
                A    +EL++          +   P     H      +LSGGQ+QRV IA A+   
Sbjct: 127  SRAAARARALELLELVGIPEPEKRLDAYP-----H------ELSGGQRQRVMIAMALANE 175

Query: 1163 PSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219
            P +L+ DE T+ALD   +  I + L +L    G   + + H L  +R  AD++ V+Q G+
Sbjct: 176  PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235

Query: 1220 VAEIGSHEQLLRKENGIY-KQLI 1241
            + E G+ E L       Y ++L+
Sbjct: 236  IVETGTTETLFAAPQHPYTRKLL 258

Length = 534

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  105 bits (264), Expect = 5e-25
 Identities = 79/232 (34%), Positives = 119/232 (51%), Gaps = 17/232 (7%)

Query: 1006 IELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I L NVS+ YP   D T   EN+NL +  G  + ++G++GSGKST+   +     P  G 
Sbjct: 2    IRLENVSYSYP---DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK 58

Query: 1065 VLIDGYDIRTLN-LRSLRRKIGLVQQEP--ALFSTTIYENIKYGNEDA--SEIELMKATK 1119
            VL+ G D    + L+ +R+ +G+V Q P       T+ E++ +G E+     IE+ K   
Sbjct: 59   VLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD 118

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
             A A   +    E Y+         LSGGQ Q VA+A  +   P  L+ DE TS LD  S
Sbjct: 119  RALAEIGL----EKYRHRSPK---TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171

Query: 1180 ENLIQEALDKLME-GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1230
               + E + KL E G+T + + H L  + +AD+I V+ +GK+   G  E +L
Sbjct: 172  GIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223

Length = 274

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  101 bits (255), Expect = 6e-25
 Identities = 59/214 (27%), Positives = 88/214 (41%), Gaps = 59/214 (27%)

Query: 378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL 437
           E   + F Y  R     +N++ ++ AG+  A VGP+G                 SGK  L
Sbjct: 1   EIENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNG-----------------SGKSTL 41

Query: 438 DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFV 497
               L+++                A      +  IL+  +D      I           +
Sbjct: 42  ----LRAI----------------AGLLKPTSGEILIDGKD------IAKLPLEELRRRI 75

Query: 498 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 557
             +P            QLSGGQ+QR+A+ARA+L NP +LLLDE TS LD  S   +   L
Sbjct: 76  GYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123

Query: 558 EKIM-SNRTTIVVAHRLSTVRDV-DTIMVLKNGQ 589
            ++    RT I+V H         D ++VLK+G+
Sbjct: 124 RELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  106 bits (266), Expect = 7e-25
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 12/231 (5%)

Query: 374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTII---SMVQRLYEP 430
           A   E     F Y +R   V  +LN  +   K  AF+GPSG GKST +   + +  L E 
Sbjct: 78  ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG 137

Query: 431 TS--GKILLDGHDLKSLQLKWL--REQMGLVSQEPALFATSIANNILLGKEDASMD--RV 484
           TS  G+I   G + +S ++  L  R ++G+V Q+P  F  SI +N+  G  +  ++  ++
Sbjct: 138 TSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKI 197

Query: 485 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544
           +E     +  S    L D  +  + + G  LSGGQ+QR+ IARA+   P++LL+DE TSA
Sbjct: 198 LEKIVEKSLKS--AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255

Query: 545 LDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
           LD  +   ++  + ++    + I+V H ++  + + D  +    G + E+G
Sbjct: 256 LDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306

Length = 329

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score =  104 bits (261), Expect = 8e-25
 Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 52/257 (20%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-GT 1064
            +   +V+ ++     +T+ + LN  V+AG  +A++G SGSGKST++ ++M   +PI  G 
Sbjct: 1    VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL-EPIDEGQ 56

Query: 1065 VLIDG---YDIRTLN----------LRSLRRKIGLVQQEPALFS-TTIYENI-------- 1102
            + ++G   Y +   N          LR +R KIG+V Q   LF   T+ +N+        
Sbjct: 57   IQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL 116

Query: 1103 --KYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160
                   +   +EL+     A+       MP            QLSGGQ+QRVAIARA+ 
Sbjct: 117  GMARAEAEKRAMELLDMVGLADK---ADHMP-----------AQLSGGQQQRVAIARALA 162

Query: 1161 KNPSILLLDEATSALDTASENLIQEALDKLME-----GRTTIMVAHRLSTIRN-ADKIAV 1214
              P ++L DE TSALD     L+ E L+ +         T ++V H +   R  AD++  
Sbjct: 163  MRPKVMLFDEVTSALDP---ELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCF 219

Query: 1215 LQQGKVAEIGSHEQLLR 1231
              +G++ E G  +++ R
Sbjct: 220  FDKGRIVEQGKPDEIFR 236

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score =  111 bits (280), Expect = 1e-24
 Identities = 69/242 (28%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 356  NSHSSERPGDDGITLPKLA-------GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFA 408
                  +     +     A       GQ++   +   Y      V ++L+FSV+ G+   
Sbjct: 1190 GGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVG 1249

Query: 409  FVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSI 468
             +G +GSGKST++S + RL   T G+I +DG    S+ L+  R+  G++ Q+  +F+ + 
Sbjct: 1250 LLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTF 1308

Query: 469  ANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528
              N L   E  S + + + A+     S +E  PD     + +GG  LS G KQ + +AR+
Sbjct: 1309 RKN-LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367

Query: 529  VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG 588
            +L   KILLLDE ++ LD  +  I+++ L++  SN T I+  HR+  + +    +V++  
Sbjct: 1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGS 1427

Query: 589  QV 590
             V
Sbjct: 1428 SV 1429

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  104 bits (260), Expect = 1e-24
 Identities = 65/217 (29%), Positives = 113/217 (52%), Gaps = 8/217 (3%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE------PTSGKILLDGHDLKSLQ 446
           + +++   +     F  +GPSGSGKST++ ++ RL E         GK+L  G D+  + 
Sbjct: 25  ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84

Query: 447 LKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 505
              LR+++G+V Q+P  F   SI +NI    +   +    E  K         GL     
Sbjct: 85  AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144

Query: 506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRT 565
            ++    +QLSGGQ+QR+ IARA+   PK+LL+DE TS +D  +   +++ + ++ +   
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIA 204

Query: 566 TIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLIS 601
            ++V+H    V R  D +  L NG++VE G+  ++ +
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241

Length = 257

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  103 bits (259), Expect = 1e-24
 Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 11/235 (4%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT- 1064
            I++R V+F Y       + +N+N+     +  A++G SG GKST++  + R  D +SG  
Sbjct: 5    IKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61

Query: 1065 ----VLIDGYDIRTLNLR--SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKAT 1118
                VL+D  +I + NL   +LR+++G+V Q+P  F  +I++N+ +G          +  
Sbjct: 62   LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            +        + + +  + ++   G+ LSGGQ+QR+ IAR +   P ++L+DE  SALD  
Sbjct: 122  EVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181

Query: 1179 SENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
            S   I+E + +L +  T  +V H +    R +D    L  G + E G   ++  +
Sbjct: 182  STMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236

Length = 251

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  104 bits (262), Expect = 1e-24
 Identities = 78/266 (29%), Positives = 134/266 (50%), Gaps = 35/266 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+ ++ F+Y  +      + L+L +  G   A++G +G+GKST++  +   Y P  G V
Sbjct: 5    IEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE----DASEIE--LMKA 1117
             + G ++   N + +R K+GLV Q+P   +FS+T+++++ +G      D  E+E  + +A
Sbjct: 63   KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
             KA     F  + P             LS GQK+RVAIA  +  +P +++LDE  + LD 
Sbjct: 123  LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171

Query: 1178 ASENLIQEALDKLMEGRTTIMVA-HRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRK--- 1232
              +  + E LD+L     T++VA H +      AD++ VL++G+V   G    L  +   
Sbjct: 172  RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIV 231

Query: 1233 -ENG--------IYKQLIRLQQDKNP 1249
             + G        I++ L  L Q K P
Sbjct: 232  EQAGLRLPLVAQIFEDLPELGQSKLP 257

Length = 274

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score =  105 bits (264), Expect = 1e-24
 Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 29/219 (13%)

Query: 1027 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 1086
            +N KV  G     +G +G+GK+T I ++     P SGT  + GYD+     R +RR IG+
Sbjct: 12   VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRSIGI 70

Query: 1087 VQQEPALFST-TIYENIK-----YG-NEDASE---IELMKATKAANAHGFISRMPEGYQS 1136
            V Q  ++    T  EN++     YG  +D +E    EL++                    
Sbjct: 71   VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE---------LFE------LG 115

Query: 1137 HVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-GR 1194
               DR V   SGG ++R+ IA +++  P +L LDE T+ LD  +   I + +  L E G 
Sbjct: 116  EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175

Query: 1195 TTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
            T ++  H +       D+IA++  G++   G+ E+L R+
Sbjct: 176  TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  105 bits (263), Expect = 1e-24
 Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 27/244 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENL-----NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060
            I  + V  +Y  +   T FE       N+ + +G  +A++G +GSGKST++  +     P
Sbjct: 3    ITFQKVEHRYQYK---TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP 59

Query: 1061 ISGTVLIDGYDI----RTLNLRSLRRKIGLVQQ--EPALFSTTIYENIKYG--NEDASEI 1112
             SGTV I    I    +   L+ LR+K+G+V Q  E  LF  T+ ++I +G  N   SE 
Sbjct: 60   TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE 119

Query: 1113 E-LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
            +   KA +     G    +PE   +       +LSGGQ +RVAIA  +   P +L+LDE 
Sbjct: 120  DAKQKAREMIELVG----LPEELLAR---SPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 172

Query: 1172 TSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228
            T+ LD      + E   KL +  G TT++V H +      AD+I V+ +G V   G+  +
Sbjct: 173  TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232

Query: 1229 LLRK 1232
            +   
Sbjct: 233  IFAD 236

Length = 290

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  103 bits (259), Expect = 1e-24
 Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 26/228 (11%)

Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDI-- 1072
            +      ++L        A++G SG GKST +  + R  D      I+G +  +G +I  
Sbjct: 16   NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75

Query: 1073 RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE 1132
              ++L  LR+++G+V Q+P  F  ++Y+N+ YG         +K     +      R+ E
Sbjct: 76   SKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYG---------LKIAGVKDKELIDQRVEE 126

Query: 1133 GYQSHV--------GDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
              +            DR  Q  SGGQ+QR+ IARA+   P ++LLDE TSALD  S + I
Sbjct: 127  SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI 186

Query: 1184 QEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1230
            +E L +L    T IMV H L    R +D+ A L  G + E G  E++ 
Sbjct: 187  EETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234

Length = 251

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score =  106 bits (266), Expect = 1e-24
 Identities = 78/236 (33%), Positives = 131/236 (55%), Gaps = 20/236 (8%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            +IE+ N+  K   R    +  +++L + +G+ +A++G SGSGK+T++ ++       SG 
Sbjct: 2    SIEIANIK-KSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 1123
            +   G D+  L+ R   RK+G V Q  ALF   T+++NI +G      + ++   +  NA
Sbjct: 59   IRFHGTDVSRLHARD--RKVGFVFQHYALFRHMTVFDNIAFG------LTVLPRRERPNA 110

Query: 1124 HGF---ISRMPEGYQ-SHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
                  ++++ E  Q +H+ DR   QLSGGQKQRVA+ARA+   P ILLLDE   ALD  
Sbjct: 111  AAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170

Query: 1179 SENLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231
                ++  L +L E    T++ V H +   +  AD++ V+ QG + + G+ +Q+ R
Sbjct: 171  VRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226

Length = 353

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  103 bits (257), Expect = 2e-24
 Identities = 64/204 (31%), Positives = 111/204 (54%), Gaps = 5/204 (2%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---GKILLDGHDLKSLQLKWLRE 452
           ++N  ++  K  A +G SG GKST +    R+ +  +   G + ++G D+K+  +  LR+
Sbjct: 20  DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79

Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE-GLPDGYQTQVGEG 511
            +G+V Q+P +F  SI  NI    +   M +  +  +A       + GL +  + ++ + 
Sbjct: 80  NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQN 139

Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571
              LSGGQ+QR+ IARA+   PK+LLLDE TSALD  S  +++  L+++  N + I+V H
Sbjct: 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTH 199

Query: 572 RLSTVRDV-DTIMVLKNGQVVESG 594
            +   + V D       G+++E G
Sbjct: 200 NMQQGKRVADYTAFFHLGELIEFG 223

Length = 246

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score =  102 bits (255), Expect = 2e-24
 Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 30/213 (14%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450
           H+  E  + +V  G+  A +GPSG+GKST+++++    EP SG I ++        L   
Sbjct: 12  HLPME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPY 68

Query: 451 REQMGLVSQEPALFA-TSIANNILLG-----KEDA-SMDRVIEAAKAANAHSFVEGLPDG 503
           +  + ++ QE  LFA  ++  NI LG     K +A   ++V++AA+      +++ LP+ 
Sbjct: 69  QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE- 127

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE-----LIVQRALE 558
                     QLSGGQ+QR+A+AR ++R   ILLLDE  SALD         L+ Q   E
Sbjct: 128 ----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE 177

Query: 559 KIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQV 590
           +    RT ++V H LS        I V+  G++
Sbjct: 178 R---QRTLLMVTHHLSDARAIASQIAVVSQGKI 207

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score =  104 bits (260), Expect = 2e-24
 Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 27/230 (11%)

Query: 1006 IELRNVSFKYPVRPD----ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
            I+ +NVS+KY    +        +++NL+V  G  L ++G++GSGKST+   +     P 
Sbjct: 5    IKCKNVSYKY-ESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63

Query: 1062 SGTVLIDGYDIRTL-NLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE----DASEIEL 1114
             G V +DG D     NL  +R K G+V Q P   + +T + E++ +G E       EI  
Sbjct: 64   EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123

Query: 1115 M--KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1172
               ++ K    + +    P     H+      LSGGQKQRVAIA  +   P  ++ DE T
Sbjct: 124  RVDESLKKVGMYEYRRHAP-----HL------LSGGQKQRVAIAGILAMRPECIIFDEPT 172

Query: 1173 SALDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
            + LD +    +   + +L    G T I++ H +     AD+I V+  GKV
Sbjct: 173  AMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKV 222

Length = 280

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score =  104 bits (260), Expect = 2e-24
 Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 15/208 (7%)

Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            + +N+NLK+  G  LA+ G +GSGK++++ L++   +P  G +   G             
Sbjct: 52   VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98

Query: 1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 1142
            +I    Q   +   TI ENI +G     E       KA      I++ PE   + +G+ G
Sbjct: 99   RISFSSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157

Query: 1143 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA-LDKLMEGRTTIMVAH 1201
            + LSGGQ+ R+++ARA+ K+  + LLD     LD  +E  I E+ + KLM  +T I+V  
Sbjct: 158  ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS 217

Query: 1202 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            ++  ++ ADKI +L +G     G+  +L
Sbjct: 218  KMEHLKKADKILILHEGSSYFYGTFSEL 245

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  105 bits (263), Expect = 2e-24
 Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT-- 1064
            E+RN +F Y  R    +  +LNL +   +  A +G SG GKST +  + +  D I GT  
Sbjct: 82   EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140

Query: 1065 ---VLIDGYDIRTLNLRSL--RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 1119
               +   G + R+  + SL  R +IG+V Q+P  F  +I++N+ YG  +    +     K
Sbjct: 141  EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
                    + + +  +  +   G  LSGGQ+QR+ IARAI   P +LL+DE TSALD  +
Sbjct: 201  IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260

Query: 1180 ENLIQEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1230
               I+E + +L +  + I+V H ++   R +D+     QG + E G  + + 
Sbjct: 261  TAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312

Length = 329

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  102 bits (257), Expect = 3e-24
 Identities = 64/214 (29%), Positives = 112/214 (52%), Gaps = 19/214 (8%)

Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL-KSLQL 447
            +++N  + A +  A +GPSG GKST++  + R+ +       +GK+ +DG D+  ++ +
Sbjct: 19  LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78

Query: 448 KWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLP 501
             LR ++G+V Q+P  F  SI  N+  G      K+   +D V+E +    A      L 
Sbjct: 79  ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA------LW 132

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
           D  + ++      LSGGQ+QR+ IAR +   P ++L+DE TSALD  +   ++  +E++ 
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192

Query: 562 SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
            N T ++V H +   R + D       G++VE  
Sbjct: 193 KNYTIVIVTHSMQQARRISDRTAFFLMGELVEHD 226

Length = 249

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  103 bits (258), Expect = 3e-24
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 24/226 (10%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS-----GKILLDGHDLKSLQLK-- 448
           ++  S+   +  A +GPSG GKST++    R+ +        G IL +G ++        
Sbjct: 24  DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83

Query: 449 WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPD 502
            LR ++G+V Q P  F  SI  N+  G      K   ++D ++E +    A      L D
Sbjct: 84  ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA------LWD 137

Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 562
             + ++ +    LSGGQ+QR+ IAR +  NP+++L+DE  SALD  +   ++  +E +  
Sbjct: 138 EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197

Query: 563 NRTTIVVAHRL---STVRDVDTIMVLKNGQVVESGTHVDLISKGGE 605
             T I+V H +   + V D    M L  G+++E      +     E
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYL--GKLIEFDKTTQIFENPHE 241

Length = 253

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  105 bits (263), Expect = 4e-24
 Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 19/212 (8%)

Query: 1027 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI----RTLNLRSLRR 1082
             N  + A    A+ G SGSGK+++I+++     P  G + ++G  +    + + L   +R
Sbjct: 17   ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76

Query: 1083 KIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDR 1141
            +IG V Q+  LF   T+  N++YG   +   +  +          + R P          
Sbjct: 77   RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG--------- 127

Query: 1142 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIM-V 1199
               LSGG+KQRVAI RA+L  P +LL+DE  ++LD   +  I   L++L  E    I+ V
Sbjct: 128  --TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185

Query: 1200 AHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1230
            +H L  + R AD++ VL+ GKV   G  E++ 
Sbjct: 186  SHSLDEVLRLADRVVVLENGKVKASGPLEEVW 217

Length = 352

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  102 bits (256), Expect = 4e-24
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 20/240 (8%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I+++++SF Y     I   E +++ +   +  A++G SG GKST I  + R  + + G V
Sbjct: 8    IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE-LEGPV 63

Query: 1066 LIDG---------YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMK 1116
             ++G         YD R +N+  LRR+IG+V Q P  F  +IYEN+ YG   ++++    
Sbjct: 64   KVEGVVDFFGQNIYDPR-ININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122

Query: 1117 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
              +   +    + + +  +  +    + LSGGQ+QR+ IARA+   P +LL+DE  SALD
Sbjct: 123  LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182

Query: 1177 TASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQ-----GKVAEIGSHEQLL 1230
              +   ++E +  L    T  +V H +    R +D  A         G++ E G   Q+ 
Sbjct: 183  PIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242

Length = 259

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score =  104 bits (262), Expect = 4e-24
 Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 50/225 (22%)

Query: 1033 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRRKIGLVQQ 1089
             G++LAVVG+SG GKST+  L+     P  G +   G D+   +    + LR+KI +V Q
Sbjct: 40   RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQ 99

Query: 1090 EPALFSTTIYENIKYGN-----------EDASEI--ELMKATKAANAHGFISRM---PEG 1133
             P            YG+           E+   I   L  A +   A   ++++   PE 
Sbjct: 100  NP------------YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH 147

Query: 1134 YQS--HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ-EALDKL 1190
            Y    H+       SGGQ+QR+AIARA++ +P +++ DE  SALD +    +Q + L+ +
Sbjct: 148  YDRYPHM------FSGGQRQRIAIARALMLDPDVVVADEPVSALDVS----VQAQVLNLM 197

Query: 1191 ME-----GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
            M+     G + + ++H LS + + AD++ V+  G+  E G+ EQ+
Sbjct: 198  MDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242

Length = 327

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score =  101 bits (254), Expect = 5e-24
 Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 34/238 (14%)

Query: 1006 IELRNVSFKY---PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
            ++L ++++ Y   P+R         +L V  G  +A++G SG+GKST+++L+  F  P S
Sbjct: 2    LKLTDITWLYHHLPMR--------FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS 53

Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNE-----DASEIELMK 1116
            G++ ++G D         RR + ++ QE  LFS  T+ +NI  G       +A++ E + 
Sbjct: 54   GSLTLNGQDHT--TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLH 111

Query: 1117 AT-KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
            A  +       ++R+P            QLSGGQ+QRVA+AR +++   ILLLDE  SAL
Sbjct: 112  AIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSAL 160

Query: 1176 DTASENLIQEALDKLMEGR--TTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLL 1230
            D A    +   + ++ + R  T +MV+H L    R A +  V+  G++A  G  ++LL
Sbjct: 161  DPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218

Length = 232

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  102 bits (256), Expect = 5e-24
 Identities = 79/236 (33%), Positives = 117/236 (49%), Gaps = 39/236 (16%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG---------YDIRTLN 1076
            +++LK+ A + +A +G SG GKST++    R  D I G   ++G         YD + +N
Sbjct: 38   DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK-VEGRLLYRDRNIYDSQ-IN 95

Query: 1077 LRSLRRKIGLVQQEPALFSTTIYENIKY--------GNEDASEIELMKATKAANAHGFIS 1128
               LRR++G+V Q P  F  +IYENI +        GN D    EL++ +    A     
Sbjct: 96   SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD----ELVEDSLRRAA----- 146

Query: 1129 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1188
             + E  +  + ++G  LSGGQ+QR+ IARAI   P +LL+DE  SALD  S   ++E   
Sbjct: 147  -IWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205

Query: 1189 KLMEGRTTIMVAHRLSTI-RNADKIAVL---------QQGKVAEIGSHEQLLRKEN 1234
            +L E  T IMV H +    R AD  A           ++GK+ E    EQ+     
Sbjct: 206  ELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQ 261

Length = 274

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score =  105 bits (263), Expect = 6e-24
 Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 18/226 (7%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            ++ LRNV+  Y    D+ I +++NL +  G  +  VG SG GKST++ ++    D  SG 
Sbjct: 3    SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 1123
            + I   + R  ++    R +G+V Q  AL+   ++ EN+ +G      ++L  A K    
Sbjct: 60   LFIG--EKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFG------LKLAGAKKE-EI 110

Query: 1124 HGFISRMPEGYQ-SHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
            +  ++++ E  Q +H+ DR  + LSGGQ+QRVAI R ++  PS+ LLDE  S LD A   
Sbjct: 111  NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170

Query: 1182 LIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIG 1224
             ++  + +L +  GRT I V H ++  +  ADKI VL  G+VA++G
Sbjct: 171  QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216

Length = 369

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =  101 bits (255), Expect = 6e-24
 Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 16/217 (7%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLR 451
               ++  V+ G+  A +G +G+GK+T++  +  L  P SG+I+ DG D+  L   +  R
Sbjct: 18  ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77

Query: 452 EQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 510
             +  V +   +F   ++  N+LLG          E         F    P   + +   
Sbjct: 78  LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF----PRLKERRNQR 133

Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR-----T 565
            GT LSGG++Q +AIARA++  PK+LLLDE +  L   +  IV+   E I   R     T
Sbjct: 134 AGT-LSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRKEGGMT 189

Query: 566 TIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
            ++V        ++ D   VL+NG++V SGT  +L++
Sbjct: 190 ILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226

Length = 237

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score =  101 bits (254), Expect = 6e-24
 Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 29/236 (12%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I+ + +   Y +  H    ++      G+T   +GPSG+GKS+++ ++  L  P SG + 
Sbjct: 3   IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60

Query: 437 LDGH--DLKSL----QLKWLREQMGLVSQEPALFA--TSIANNI-----LLG-KEDASMD 482
           + G+  D         ++ LR  +G+V Q+  L+   T   N I     +LG  +D ++ 
Sbjct: 61  IAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA 120

Query: 483 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542
           R  +  +      + +  P             LSGGQ+QR+AIARA++  P++LL DE T
Sbjct: 121 RAEKLLERLRLKPYADRFP-----------LHLSGGQQQRVAIARALMMEPQVLLFDEPT 169

Query: 543 SALDAE-SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMV-LKNGQVVESGTH 596
           +ALD E +  IV    E   +  T ++V H +   R   + +V ++NG +VE G  
Sbjct: 170 AALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225

Length = 242

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score =  103 bits (258), Expect = 9e-24
 Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 23/196 (11%)

Query: 410 VGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSI 468
           +GPSG GK+T++ ++    +P SG I+LDG D+    +      + +V Q  ALF   ++
Sbjct: 2   LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMTV 59

Query: 469 ANNILLG----KEDAS--MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522
             N+  G    K   +    RV+EA +      F +  P            QLSGGQ+QR
Sbjct: 60  EENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQR 108

Query: 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRDV- 579
           +A+ARA++  PKILLLDE  SALD +    +Q  L+ I      T + V H       + 
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168

Query: 580 DTIMVLKNGQVVESGT 595
           D I +++ G++ + GT
Sbjct: 169 DRIAIMRKGKIAQIGT 184

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score =  100 bits (253), Expect = 9e-24
 Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 23/222 (10%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL--NLRSLRRK 1083
            +++  V  G    ++G +G+GK+T+ +L+  F  P SG+VL DG DI  L  +  + R  
Sbjct: 18   DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA-RLG 76

Query: 1084 IGLVQQEPALFST-TIYENI--------KYGNEDASEIELMKATKAANAHGFISRMPEGY 1134
            IG   Q P LF   T+ EN+          G   A      +  +   A   + R+  G 
Sbjct: 77   IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARER-AEELLERV--GL 133

Query: 1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-MEG 1193
                     +LS GQ++R+ IARA+  +P +LLLDE  + L+      + E + +L   G
Sbjct: 134  ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193

Query: 1194 RTTIMVAHRLSTIRN-ADKIAVLQQGKV------AEIGSHEQ 1228
             T ++V H +  + + AD++ VL QG+V       E+ ++ +
Sbjct: 194  ITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  101 bits (253), Expect = 9e-24
 Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 27/222 (12%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH--DLKSL--- 445
           H    ++      G+T   +GPSG+GKS+++ ++  L  P SG + + G+  D       
Sbjct: 15  HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSD 74

Query: 446 -QLKWLREQMGLVSQEPALFA--TSIANNI-----LLG-KEDASMDRVIEAAKAANAHSF 496
             ++ LR  +G+V Q+  L+   T   N I     +LG  +D ++ R  +  K      +
Sbjct: 75  KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPY 134

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQR 555
            +  P             LSGGQ+QR+AIARA++  P++LL DE T+ALD E +  IV  
Sbjct: 135 ADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183

Query: 556 ALEKIMSNRTTIVVAHRLSTVRDVDTIMV-LKNGQVVESGTH 596
             E   +  T ++V H +   R   + +V ++NG +VE G  
Sbjct: 184 IKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225

Length = 242

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  102 bits (256), Expect = 9e-24
 Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 34/243 (13%)

Query: 1004 GNIELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
             +I L NVS+ Y  +   +     N +L     +   V+G +GSGKST+I L        
Sbjct: 5    KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64

Query: 1062 SGTVLIDGYDI-----RTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG----NEDAS 1110
            +G  ++  Y I     +   ++ LR++IGLV Q P   LF  TI ++I +G     E+  
Sbjct: 65   TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124

Query: 1111 EI-----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165
            E      EL+K          + ++PE Y   V     +LSGGQK+RVA+A  I  + + 
Sbjct: 125  EAYKKVPELLK----------LVQLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNT 171

Query: 1166 LLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVAE 1222
            L+LDE T  LD   E       ++L +   +  IMV H +  + R AD++ V+ +GKV  
Sbjct: 172  LVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231

Query: 1223 IGS 1225
            IGS
Sbjct: 232  IGS 234

Length = 289

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score =  101 bits (253), Expect = 1e-23
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 39/232 (16%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDI--RTLNL 1077
            E++NL +      A +G SG GKSTV+  + R ++ I      G VL+DG D+    ++ 
Sbjct: 21   EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80

Query: 1078 RSLRRKIGLVQQEPALFST-TIYENI--------KYGNEDASEIELMKATKAANAHGFIS 1128
             ++RR IG+V Q P  F T +I +N+            +D  E+ + K+ + AN      
Sbjct: 81   VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL-VEKSLRGAN------ 133

Query: 1129 RMPEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
                   + V DR    G  LSGGQ+QR+ IARAI   P +LL+DE  SALD  S   I+
Sbjct: 134  -----LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIE 188

Query: 1185 EALDKLMEGRTTIMVAHRL-STIRNADKIA------VLQQGKVAEIGSHEQL 1229
            + +++L +  T ++V H +    R +D+ A        + G++ EI   E++
Sbjct: 189  DLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240

Length = 258

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  101 bits (253), Expect = 1e-23
 Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 16/227 (7%)

Query: 1020 DITIF-------ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLI 1067
            D+ I+       +N+NL V  G   A++G SG GK+T +  + R +D      ++G +L+
Sbjct: 9    DVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL 68

Query: 1068 DGYDIRT--LNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 1124
            DG DI    ++  ++RR++G+V Q+P  F T ++++N+  G + A   +     + A   
Sbjct: 69   DGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS 128

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
               + + +  +  +      LSGGQ+QR+ IARA+   P ILL+DE TSALD AS   I+
Sbjct: 129  LRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIE 188

Query: 1185 EALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLL 1230
            + +  L +  T I+V H +    R +D  +    G + E G  +QL 
Sbjct: 189  DLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235

Length = 252

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score =  101 bits (253), Expect = 1e-23
 Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 16/210 (7%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDI--RTLNL 1077
            +N+NL +      A++G SG GKST I  + R  + +     +G +L    +I  ++ ++
Sbjct: 41   KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100

Query: 1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSH 1137
              LR  +G+V Q+P  F  +IY+N+ YG     +I  +K  K  +     S         
Sbjct: 101  EELRTNVGMVFQKPNPFPKSIYDNVTYG----PKIHGIKDKKTLDEIVEKSLRGAAIWDE 156

Query: 1138 VGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG 1193
            + DR       LSGGQ+QR+ IAR +   P ++L+DE TSALD  S   ++E + +L + 
Sbjct: 157  LKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD 216

Query: 1194 RTTIMVAHRL-STIRNADKIAVLQQGKVAE 1222
             + I+V H +    R +DK A    G V E
Sbjct: 217  YSIIIVTHNMQQAARISDKTAFFLNGYVNE 246

Length = 271

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  101 bits (254), Expect = 1e-23
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 42/235 (17%)

Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL------- 1075
            + + ++L+ +AG  ++++G SGSGKST +  +     P +G++ ++G +IR         
Sbjct: 21   VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80

Query: 1076 ------NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIE-------LMKATKAA 1121
                   L+ LR ++G+V Q   L+S  T+ EN+         IE       + KA    
Sbjct: 81   KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV---------IEAPVHVLGVSKAEAIE 131

Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
             A  +++++  G           LSGGQ+QRVAIARA+   P ++L DE TSALD     
Sbjct: 132  RAEKYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP---E 186

Query: 1182 LIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
            L+ E L K+M     EGRT ++V H +   R+ +  +  L QGK+ E G  EQ+ 
Sbjct: 187  LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240

Length = 256

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score =  101 bits (253), Expect = 1e-23
 Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 21/181 (11%)

Query: 405 KTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDL--KSLQLKWLREQMGLV 457
           K  A +GPSGSGKST +  + R+ +       +G+IL  G D+  K + +  +R+ +G+V
Sbjct: 47  KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMV 106

Query: 458 SQEPALFATSIANNILLG------KEDASMDRVIEAA-KAANAHSFVEGLPDGYQTQVGE 510
            Q P  FA SI  NI         K+   +D ++E + K A        L D  +  + +
Sbjct: 107 FQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA-------ALWDQVKDDLHK 159

Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA 570
               LSGGQ+QR+ IARA+   P ILL+DE  SALD  S + ++  + ++  N T I+V 
Sbjct: 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVT 219

Query: 571 H 571
           H
Sbjct: 220 H 220

Length = 267

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score =  108 bits (271), Expect = 1e-23
 Identities = 146/564 (25%), Positives = 239/564 (42%), Gaps = 96/564 (17%)

Query: 731  VGLAVVTIPVYLLQHYFYTLMG-EHLTARVRLSMFSAI------LSNEIGWFDLDENNTG 783
            +GL ++ I   LL H    + G  HL  ++R+++FS I      LS+ +    LD+ +TG
Sbjct: 126  LGLCLLFIVRTLLLHP--AIFGLHHLGMQMRIALFSLIYKKTLKLSSRV----LDKISTG 179

Query: 784  LLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAF 843
             L+S L+ +       LA     +   V +     ++   L W L   +  +    +G  
Sbjct: 180  QLVSLLSNNLNKFDEGLA-----LAHFVWIAPLQVILLMGLIWEL---LEVNGFCGLGFL 231

Query: 844  VAEQLFLKGFG---GDY--NRA--YSRATSVAREAIANIRTVAAYG----IEKRISIQFA 892
            +   LF    G     Y   RA   S   ++  E I NI++V AY     +EK I     
Sbjct: 232  ILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQ 291

Query: 893  SELSQPNKQALLRGH------ISGF--------------GYGVSQLLSLCSY-------- 924
             EL    K A LR         SGF              G  + ++ +  SY        
Sbjct: 292  DELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTV 351

Query: 925  ------ALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGP 978
                  A+  WY S+    K  +F  + K     +   L   E      ++V  + +   
Sbjct: 352  TRQFPGAIQTWYDSLGAITKIQDF--LCKEEYKTLEYNLTTTEV-----EMVNVTASWDE 404

Query: 979  VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 1038
              G L+ K  I+ ++ A K+     G+  L   +F   V P   + +N++ K+  G+ LA
Sbjct: 405  GIGELFEK--IKQNNKARKQPN---GDDGLFFSNFSLYVTP---VLKNISFKLEKGQLLA 456

Query: 1039 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 1098
            V G +GSGKS+++ ++M   +P  G +   G             +I    Q   +   TI
Sbjct: 457  VAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTI 503

Query: 1099 YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158
             +NI +G     E       KA      I+  PE  ++ +G+ G+ LSGGQ+ R+++ARA
Sbjct: 504  KDNIIFG-LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARA 562

Query: 1159 ILKNPSILLLDEATSALDTASENLIQEA-LDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1217
            + K+  + LLD   + LD  +E  I E+ L KLM  +T I+V  +L  ++ ADKI +L +
Sbjct: 563  VYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHE 622

Query: 1218 GKVAEIGSHEQLLRKENGIYKQLI 1241
            G     G+  +L  K       L+
Sbjct: 623  GVCYFYGTFSELQAKRPDFSSLLL 646

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =  100 bits (252), Expect = 1e-23
 Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 25/239 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+ N+S  Y     I     ++L+V  G  +A++G++G+GK+T++  +M    P SG +
Sbjct: 4    LEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60

Query: 1066 LIDGYDIRTLNL-RSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANA 1123
            + DG DI  L      R  I  V +   +F   T+ EN+           L+ A    + 
Sbjct: 61   IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENL-----------LLGAYARRDK 109

Query: 1124 HGFISRMPEGY------QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
                  + E Y      +     R   LSGG++Q +AIARA++  P +LLLDE +  L  
Sbjct: 110  EAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP 169

Query: 1178 ASENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1233
                 I EA+ +L    G T ++V          AD+  VL+ G++   G+  +LL   
Sbjct: 170  KIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228

Length = 237

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  101 bits (252), Expect = 1e-23
 Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 25/210 (11%)

Query: 1038 AVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQE 1090
            A++G SG GKSTV+  + R +D      ++G +L+D  DI  R ++  S+RR++G+V Q+
Sbjct: 34   AIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQK 93

Query: 1091 PALF-STTIYENIKYG--------NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDR 1141
            P  F + +IY+N+  G          +A EI      + A        + +  +  +   
Sbjct: 94   PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVA--------LWDEVKDRLKSN 145

Query: 1142 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1201
             ++LSGGQ+QR+ IAR I   P ++L+DE  SALD  S   I+E +++L E  T I+V H
Sbjct: 146  AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTH 205

Query: 1202 RL-STIRNADKIAVLQQGKVAEIGSHEQLL 1230
             +    R +D  A    G + E G  +++ 
Sbjct: 206  NMQQAARVSDYTAFFYMGDLVECGETKKIF 235

Length = 252

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score =  103 bits (259), Expect = 1e-23
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 25/221 (11%)

Query: 1027 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-------LRS 1079
             +  +      A+ G+SGSGK+T+I L+     P  G ++++G   RTL        L  
Sbjct: 16   ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG---RTLFDSRKGIFLPP 72

Query: 1080 LRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ-SH 1137
             +R+IG V QE  LF   ++  N++YG         MK  + +       R+ E     H
Sbjct: 73   EKRRIGYVFQEARLFPHLSVRGNLRYG---------MKRARPSERRISFERVIELLGIGH 123

Query: 1138 VGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GR 1194
            +  R   +LSGG+KQRVAI RA+L +P +LL+DE  +ALD   +  I   L++L    G 
Sbjct: 124  LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI 183

Query: 1195 TTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
              + V+H L  + R AD++ VL+ G+VA  G   ++    +
Sbjct: 184  PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score =  105 bits (264), Expect = 2e-23
 Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 32/215 (14%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK----WLR 451
           +++ SV  G+  A +G +G+GKST++ ++  LY+P SG+I +DG   K +++K     +R
Sbjct: 22  DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG---KEVRIKSPRDAIR 78

Query: 452 EQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVE--GL---PDGYQ 505
             +G+V Q   L  T ++A NI+LG E +    +      A      E  GL   PD   
Sbjct: 79  LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAK- 137

Query: 506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRALEKIMSN- 563
             V +    LS G++QR+ I +A+ R  ++L+LDE T+ L   E++      L +I+   
Sbjct: 138 --VAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD-----ELFEILRRL 186

Query: 564 ----RTTIVVAHRLSTVRDV-DTIMVLKNGQVVES 593
               +T I + H+L  V  + D + VL+ G+VV +
Sbjct: 187 AAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221

Length = 501

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score =  108 bits (270), Expect = 2e-23
 Identities = 67/250 (26%), Positives = 132/250 (52%), Gaps = 4/250 (1%)

Query: 992  DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVI 1051
            ++P +++     G ++++ ++ KY       + ++L+  V  G+ + ++G++GSGKST++
Sbjct: 1204 ENPHAQKCWPSGGQMDVQGLTAKY-TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL 1262

Query: 1052 SLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASE 1111
            S ++R      G + IDG    ++ L++ R+  G++ Q+  +FS T  +N+    E  S+
Sbjct: 1263 SALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD-PYEQWSD 1320

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
             E+ K  +       I + P+     + D G  LS G KQ + +AR+IL    ILLLDE 
Sbjct: 1321 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEP 1380

Query: 1172 TSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231
            ++ LD  +  +I++ L +     T I+  HR+  +    +  V++   V +  S ++LL 
Sbjct: 1381 SAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL- 1439

Query: 1232 KENGIYKQLI 1241
             E  ++KQ +
Sbjct: 1440 NETSLFKQAM 1449

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  101 bits (254), Expect = 2e-23
 Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 34/254 (13%)

Query: 377 IEFSEVCFAYPSRPHMVFENL-----NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431
           I F +V   Y  +    FE       N S+ +G   A +G +GSGKST++  +  L +PT
Sbjct: 3   ITFQKVEHRY--QYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT 60

Query: 432 SGKILLDGHDL----KSLQLKWLREQMGLVSQ--EPALFATSIANNILLGKEDASMDRVI 485
           SG + +    +    K+ +LK LR+++G+V Q  E  LF  ++  +I  G  +  +    
Sbjct: 61  SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED 120

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
              KA      V GLP+    +      +LSGGQ +R+AIA  +   P++L+LDE T+ L
Sbjct: 121 AKQKAREMIELV-GLPEELLAR---SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176

Query: 546 DAESELIVQRALEKIMS---------NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGT 595
           D        +  +++M            TT++V H +    R  D I+V+  G V   GT
Sbjct: 177 DP-------KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229

Query: 596 HVDLISKGGEYAAL 609
             ++ +   E  A+
Sbjct: 230 PREIFADPDELEAI 243

Length = 290

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 98.4 bits (246), Expect = 3e-23
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 43/205 (20%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
           N++     G+  A +GPSG+GKST+++ +  +R     SG++L++G  L     +  R+ 
Sbjct: 27  NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSFRKI 83

Query: 454 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAK-AANAHSFVEGLPDGYQTQVGEGG 512
           +G V Q+  L  T                 V E    AA                     
Sbjct: 84  IGYVPQDDILHPTLT---------------VRETLMFAAKLRG----------------- 111

Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAH 571
             LSGG+++R++IA  ++ NP +L LDE TS LD+ S L V   L ++    RT I   H
Sbjct: 112 --LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169

Query: 572 RLST--VRDVDTIMVLKNGQVVESG 594
           + S+      D +++L  G+V+  G
Sbjct: 170 QPSSEIFELFDKLLLLSQGRVIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score =  100 bits (250), Expect = 3e-23
 Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 22/214 (10%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQLKW- 449
           +++      +  A +GPSGSGKST++  + R+ +       +G I+ +GH++ S +    
Sbjct: 23  SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82

Query: 450 -LREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA-KAANAHSFVEGLP 501
            LR+++G+V Q+P  F  SI  N++ G      K+   +D  +E + K A+       + 
Sbjct: 83  DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS-------IW 135

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
           D  + ++ +    LSGGQ+QR+ IAR +  +PKI+LLDE TSALD  S   ++  L  + 
Sbjct: 136 DEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK 195

Query: 562 SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESG 594
            + T ++V   +    R  D      +G ++E  
Sbjct: 196 DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229

Length = 252

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =   99 bits (250), Expect = 3e-23
 Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 24/229 (10%)

Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 1080
            +T   +++L+V  G  + ++G +G+GK+T+ +L+  FY P SGTV+  G DI  L    +
Sbjct: 17   LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76

Query: 1081 -RRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAAN---------AHGFISR 1129
             R  I    Q   LF   T+ EN+  G      +  +     A          A   +  
Sbjct: 77   ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136

Query: 1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL-DTASENLIQEALD 1188
            +  G           LS GQ++R+ IARA+   P +LLLDE  + L    +E L  E + 
Sbjct: 137  V--GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIR 193

Query: 1189 KL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKV------AEIGSHEQ 1228
            +L    G T +++ H +  +   AD+I VL  G+V       E+ ++ +
Sbjct: 194  ELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPR 242

Length = 250

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  100 bits (249), Expect = 3e-23
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 25/204 (12%)

Query: 408 AFVGPSGSGKSTIISMVQRLYE--PT---SGKILLDGHDL--KSLQLKWLREQMGLVSQE 460
           A +GPSG GKST++  + R+++  P+   +GKILLD  D+  + +    +R ++G+V Q+
Sbjct: 34  AIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQK 93

Query: 461 PALF-ATSIANNILLG--------KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
           P  F A SI +N++ G        + +A  D ++E++    A      L D  + ++   
Sbjct: 94  PNPFPAMSIYDNVIAGYKLNGRVNRSEA--DEIVESSLKRVA------LWDEVKDRLKSN 145

Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571
             +LSGGQ+QR+ IAR +   P+++L+DE  SALD  S L ++  +E++    T I+V H
Sbjct: 146 AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTH 205

Query: 572 RL-STVRDVDTIMVLKNGQVVESG 594
            +    R  D       G +VE G
Sbjct: 206 NMQQAARVSDYTAFFYMGDLVECG 229

Length = 252

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  101 bits (252), Expect = 3e-23
 Identities = 76/218 (34%), Positives = 104/218 (47%), Gaps = 42/218 (19%)

Query: 1038 AVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDI--RTLNLRSLRRKIGLVQQE 1090
            A++G SG GKST +  + R  D I     +G ++ DG DI  +  +   LR+KIG+V Q+
Sbjct: 69   AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128

Query: 1091 PALFSTTIYENIKYG--------NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDR- 1141
            P  F  +I++NI YG         +   EI      KAA                V DR 
Sbjct: 129  PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA------------LWDEVSDRL 176

Query: 1142 ---GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS----ENLIQEALDKLMEGR 1194
                + LSGGQ+QR+ +AR +   P ILLLDE TSALD  +    E+LIQE     + G 
Sbjct: 177  DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-----LRGS 231

Query: 1195 TTIM-VAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1230
             TIM V H +    R +D      +G + E     QL 
Sbjct: 232  YTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269

Length = 286

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 99.4 bits (248), Expect = 3e-23
 Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 32/223 (14%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP----ISGTVLIDGYDIRTLNLRSLR 1081
            +LNL +  G  LA+VG+SGSGKS     ++    P     SG +L+DG  +  L++R   
Sbjct: 4    DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG-- 61

Query: 1082 RKIGLVQQEP-----ALFS--TTIYENIK-----YGNEDASEIELMKATKAANAHGFISR 1129
            R I  + Q P      LF+      E ++          A  +E ++A    +    + +
Sbjct: 62   RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121

Query: 1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1189
             P            QLSGG  QRV IA A+L  P  L+ DE T+ LD  ++  + + L +
Sbjct: 122  YP-----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170

Query: 1190 LMEGRTT--IMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQL 1229
            L +   T  +++ H L  + R AD++AV+  G++ E G+ +++
Sbjct: 171  LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score =   99 bits (249), Expect = 3e-23
 Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 16/213 (7%)

Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLV--MRFYDP---ISGTVLIDGYDI--RTLN 1076
             +N+NL +      A++G SG GKST I  +  M    P   ++G +  +G +I    ++
Sbjct: 28   LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87

Query: 1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 1136
            L  LR+ IG+V Q+   F  +I++N+ YG      I   K  K        S        
Sbjct: 88   LVELRKNIGMVFQKGNPFPQSIFDNVAYG----PRIHGTKNKKKLQEIVEKSLKDVALWD 143

Query: 1137 HVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1192
             V DR     + LSGGQ+QR+ IARA+  NP +LL+DE TSALD  S   I+E + KL E
Sbjct: 144  EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203

Query: 1193 GRTTIMVAHRL-STIRNADKIAVLQQGKVAEIG 1224
              T ++V H +    R +D+ A    G++ E  
Sbjct: 204  KYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236

Length = 259

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score =   99 bits (249), Expect = 4e-23
 Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 19/238 (7%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 1060
            IE  N+   Y       + + ++LK+      A++G SG GKST++    R  +      
Sbjct: 5    IETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61

Query: 1061 ISGTVLIDGYDIRTLNLRSL--RRKIGLVQQEPALFS-TTIYENI----KYGNEDASEIE 1113
            + G V + G +I + ++  +  RR++G+V Q P  F   TIY+N+    K      S+ E
Sbjct: 62   VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121

Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
            L +  + A      + + +  +  + D    LSGGQ+QR+ IARA+   P ILL+DE T+
Sbjct: 122  LDERVEWALKK---AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178

Query: 1174 ALDTASENLIQEALDKLMEGRTTIMVAHR-LSTIRNADKIAVLQQGKVAEIGSHEQLL 1230
             +D      I+E L +L +  T ++V H      R +D +A L  GK+ E+G   ++ 
Sbjct: 179  NIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236

Length = 253

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 96.7 bits (242), Expect = 5e-23
 Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 64/202 (31%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
            ++ SV  G+  A +G +G+GKST++ ++  LY+P SG+IL+DG                
Sbjct: 18  GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG---------------- 61

Query: 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH--SFVEGLPDGYQTQVGEGGT 513
               +   FA+                      + A     + V      YQ        
Sbjct: 62  ----KEVSFAS---------------------PRDARRAGIAMV------YQ-------- 82

Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESE--LIVQRALEKIMSNRTTIVVA 570
            LS G++Q + IARA+ RN ++L+LDE T+AL  AE E    V R L         I ++
Sbjct: 83  -LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA--QGVAVIFIS 139

Query: 571 HRLSTVRDV-DTIMVLKNGQVV 591
           HRL  V ++ D + VL++G+VV
Sbjct: 140 HRLDEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  100 bits (250), Expect = 5e-23
 Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 20/252 (7%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE  ++C++Y         N+NF        A +GP+G+GKST+      + +PTSG +L
Sbjct: 4   IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAANAH 494
           + G  +    ++ +R+ +GLV Q P   +F+ ++  +I  G  +  +D    A + ++A 
Sbjct: 63  IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSAL 122

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE--SELI 552
             + GL +  + +V      LSGG+K+R+AIA  +   P++L+LDE T+ LD +   ELI
Sbjct: 123 HML-GLEE-LRDRVPH---HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177

Query: 553 V-QRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALV 610
                L +     T I   H+L  V ++ D I V+  G++V  GT  ++  +        
Sbjct: 178 DFLNDLPETYG-MTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP------- 229

Query: 611 NLQSSEHLSNPS 622
           +L +  HL  PS
Sbjct: 230 DLLARVHLDLPS 241

Length = 277

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score =  101 bits (253), Expect = 5e-23
 Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 40/220 (18%)

Query: 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS---LQLKWLREQMG 455
           F+++ GKT A VG SG GKST+  ++  +  PT G++   G DL        K LR+++ 
Sbjct: 36  FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQ 95

Query: 456 LVSQEP-----------ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE--GL-P 501
           +V Q P            +    +  N  L            A +   A + +   GL P
Sbjct: 96  IVFQNPYGSLNPRKKVGQILEEPLLINTSLSA----------AERREKALAMMAKVGLRP 145

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
           + Y           SGGQ+QRIAIARA++ +P +++ DE  SALD     +  + L  +M
Sbjct: 146 EHYDRY----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS---VQAQVLNLMM 198

Query: 562 S-----NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
                   + + ++H LS V  + D +MV+  G+ VE GT
Sbjct: 199 DLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238

Length = 327

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 99.7 bits (248), Expect = 5e-23
 Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 24/241 (9%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD----- 1059
             I++ N++  Y  +  +   +N+++++      A++G SG GKST I  + R  D     
Sbjct: 12   QIKVENLNLWYGEKQAL---KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68

Query: 1060 PISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKA 1117
             I G V I+G DI    +++  LR+ +G+V Q+P  F  +IY+N+ YG         +  
Sbjct: 69   RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPR-------IHG 121

Query: 1118 TKAANAHGFISRM--PEGYQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
                +  G +              DR     + LSGGQ+QR+ IAR +   P I+L DE 
Sbjct: 122  ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181

Query: 1172 TSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLL 1230
            TSALD  S   I++ +  L +  T ++V H +    R +D       G++ E G   Q+ 
Sbjct: 182  TSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241

Query: 1231 R 1231
             
Sbjct: 242  H 242

Length = 258

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 99.3 bits (247), Expect = 6e-23
 Identities = 77/247 (31%), Positives = 120/247 (48%), Gaps = 40/247 (16%)

Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL------- 1075
            + + ++L+ +AG  ++++G SGSGKST +  +     P  G+++++G  I  +       
Sbjct: 20   VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79

Query: 1076 ------NLRSLRRKIGLVQQEPALFS-TTIYENIK--------YGNEDASEIELMKATKA 1120
                   LR LR ++ +V Q   L+S  T+ EN+            ++A E    +A K 
Sbjct: 80   KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE----RAVKY 135

Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
                G   R    Y  H       LSGGQ+QRV+IARA+   P +LL DE TSALD    
Sbjct: 136  LAKVGIDERAQGKYPVH-------LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188

Query: 1181 NLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1238
              +   + +L  EG+T ++V H +   R+ +  +  L QGK+ E G+ EQL         
Sbjct: 189  GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN-----P 243

Query: 1239 QLIRLQQ 1245
            Q  RLQQ
Sbjct: 244  QSPRLQQ 250

Length = 257

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  105 bits (265), Expect = 7e-23
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 16/210 (7%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
           N+N  V  G   A VG +G GK+++IS +     P S   ++            +R  + 
Sbjct: 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------------IRGTVA 682

Query: 456 LVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514
            V Q   +F  ++ +NIL G   D   +R   A         ++ LP G  T++GE G  
Sbjct: 683 YVPQVSWIFNATVRDNILFGSPFDP--ERYERAIDVTALQHDLDLLPGGDLTEIGERGVN 740

Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALEKIMSNRTTIVVAHRL 573
           +SGGQKQR+++ARAV  N  + + D+  SALDA     +  + ++  +  +T ++V ++L
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800

Query: 574 STVRDVDTIMVLKNGQVVESGTHVDLISKG 603
             +  VD I+++  G + E GT+ +L + G
Sbjct: 801 HFLSQVDRIILVHEGMIKEEGTYEELSNNG 830

Length = 1622

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 99.3 bits (247), Expect = 7e-23
 Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 20/213 (9%)

Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQLK 448
            + ++   +  +  A +GPSG GKST +  + R+ +       +G + L G ++ +    
Sbjct: 21  LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80

Query: 449 --WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGL 500
              LR+Q+G+V Q+P  F  SI  N++ G      K+ A +D  +E +    A      +
Sbjct: 81  VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA------I 134

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
            D  +  + E    LSGGQ+QR+ IAR +   P ++LLDE TSALD  S   ++  L ++
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194

Query: 561 MSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVE 592
               T I+V H +    R  D       G ++E
Sbjct: 195 RDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227

Length = 252

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 99.5 bits (248), Expect = 7e-23
 Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 36/210 (17%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDI--RTLNL 1077
            +N+ L +   +  A +G SG GKST++    R  D I      G V   G ++    ++ 
Sbjct: 27   KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86

Query: 1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ-- 1135
              +RR+IG+V Q+P  F  +IY+NI YG               A  +G+   M E  +  
Sbjct: 87   VEVRRRIGMVFQKPNPFPKSIYDNIAYG---------------ARINGYKGDMDELVERS 131

Query: 1136 -------SHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
                     V D+    G+ LSGGQ+QR+ IARAI   P ++L+DE  SALD  S   I+
Sbjct: 132  LRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIE 191

Query: 1185 EALDKLMEGRTTIMVAHRL-STIRNADKIA 1213
            E + +L E  T I+V H +    R +D  A
Sbjct: 192  ELMHELKEQYTIIIVTHNMQQAARVSDMTA 221

Length = 264

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 99.8 bits (249), Expect = 7e-23
 Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 22/228 (9%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE  ++ F Y        + L+ S+  G   A +GP+G+GKST++  +  +Y P  G++ 
Sbjct: 5   IEVEDLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMD------RVIEAA 488
           + G ++ +   KW+R ++GLV Q+P   +F++++ +++  G  +  +D      RV EA 
Sbjct: 64  VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123

Query: 489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
           KA     F +  P             LS GQK+R+AIA  +  +P +++LDE  + LD  
Sbjct: 124 KAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172

Query: 549 SELIVQRALEKIMSNRTTIVVA-HRLSTVRD-VDTIMVLKNGQVVESG 594
            +  +   L+++ +   T++VA H +    +  D ++VLK G+V+  G
Sbjct: 173 GQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220

Length = 274

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 98.2 bits (245), Expect = 7e-23
 Identities = 66/209 (31%), Positives = 108/209 (51%), Gaps = 18/209 (8%)

Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRS 1079
            +  ++NL+++ G  + + G SGSGK+T+++L+        G++ + G ++   +   L  
Sbjct: 20   VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79

Query: 1080 LRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE--GYQS 1136
            LRR IG + Q   L    T  +N++        +EL        A      M E  G   
Sbjct: 80   LRRNIGYIFQAHNLLGFLTARQNVQMA------LELQPNLSYQEARERARAMLEAVGLGD 133

Query: 1137 HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGR 1194
            H+      LSGGQKQRVAIARA++  P ++L DE T+ALD+ S   + E + KL   +G 
Sbjct: 134  HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193

Query: 1195 TTIMVAH--RLSTIRNADKIAVLQQGKVA 1221
            T ++V H  R+  +  AD+I  ++ GK+ 
Sbjct: 194  TILIVTHDNRILDV--ADRIVHMEDGKLL 220

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score =  105 bits (264), Expect = 9e-23
 Identities = 63/240 (26%), Positives = 123/240 (51%), Gaps = 19/240 (7%)

Query: 1015 YPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT 1074
            + + P + +  ++++ V  G+   V+G +GSGKST++  ++  ++   G V  +      
Sbjct: 668  FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------ 720

Query: 1075 LNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY 1134
                   R I  V Q+  + + T+  NI + +E+ +   L  A + +     ++++  G 
Sbjct: 721  -------RSIAYVPQQAWIMNATVRGNILFFDEEDAA-RLADAVRVSQLEADLAQLGGGL 772

Query: 1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALDKLMEG 1193
            ++ +G++GV LSGGQK RV++ARA+  N  + LLD+  SALD    E +++E     + G
Sbjct: 773  ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832

Query: 1194 RTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEAME 1253
            +T ++  H++  +  AD +  L  G+V   GS    +R    +Y  L   +  +N ++ E
Sbjct: 833  KTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR--TSLYATL-AAELKENKDSKE 889

Length = 1560

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 98.4 bits (245), Expect = 9e-23
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 36/240 (15%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I+L  ++  Y       +F+ + L    G +L ++G SG+GKS+++ ++     P SGT+
Sbjct: 3    IQLNGINCFYGAHQ--ALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59

Query: 1066 LIDG--YDIRTL----NLRSLRRKIGLVQQEPALFS-TTIYENI--------KYGNEDAS 1110
             I G  +D         +R LRR +G+V Q+  L+   T+ EN+            + A 
Sbjct: 60   NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119

Query: 1111 E--IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL 1168
                +L+K  +      +  R P           + LSGGQ+QRVAIARA++  P +LL 
Sbjct: 120  ARAEKLLKRLRLKP---YADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLF 165

Query: 1169 DEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1226
            DE T+ALD      I   + +L E G T ++V H +   R  A ++  ++ G + E G  
Sbjct: 166  DEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225

Length = 242

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 99.6 bits (248), Expect = 9e-23
 Identities = 64/201 (31%), Positives = 106/201 (52%), Gaps = 24/201 (11%)

Query: 408 AFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSLQLKWLREQMGLVSQE 460
           A +GPSG GKST +  + R+ +      T+G ++ DG D+  K      LR+++G+V Q+
Sbjct: 69  AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128

Query: 461 PALFATSIANNILLG------KEDASMDRVIEAA--KAANAHSFVEGLPDGYQTQVGEGG 512
           P  F  SI +NI  G       +   ++ ++E +  KAA        L D    ++ +  
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA--------LWDEVSDRLDKNA 180

Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHR 572
             LSGGQ+QR+ +AR +   P+ILLLDE TSALD ++   ++  ++++  + T ++V H 
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHN 240

Query: 573 LSTVRDV-DTIMVLKNGQVVE 592
           +     V D  M    G +VE
Sbjct: 241 MQQASRVSDYTMFFYEGVLVE 261

Length = 286

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 98.9 bits (247), Expect = 9e-23
 Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 28/227 (12%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 1081
             I  +L+L +  G+  A++G +G GKST++    R   P SGTV +    I  L+ R L 
Sbjct: 16   RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75

Query: 1082 RKIGLV-QQEPALFSTTIYENIKYGNE-------DASEIELMKATKAANAHGFISRMPEG 1133
            R++ L+ Q        T+ E + YG           S  +  +  +A         M + 
Sbjct: 76   RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA---------MEQT 126

Query: 1134 YQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM- 1191
              +H+ DR +  LSGGQ+QR  +A  + ++  ++LLDE T+ LD       Q  L +LM 
Sbjct: 127  RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH----QVELMRLMR 182

Query: 1192 ----EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
                +G+T + V H L+   R  D + VL  G V   G+ E+++   
Sbjct: 183  ELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229

Length = 255

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 98.9 bits (247), Expect = 9e-23
 Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 13/227 (5%)

Query: 1006 IELRN--VSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
            I L N   +F +   P        L+L+++ G  + V+G +G+GKST+++ +     P S
Sbjct: 2    ISLSNATKTF-FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60

Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST---TIYENIKYGNEDASEIELMKATK 1119
            G +LIDG D+   ++      +  V Q+P   +    TI EN+        +  L  A  
Sbjct: 61   GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALN 120

Query: 1120 AANAHGF---ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
                  F   ++R+  G ++ + DR   LSGGQ+Q +++  A L  P ILLLDE T+ALD
Sbjct: 121  ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180

Query: 1177 TASENLIQEALDKLMEGR--TTIMVAHRL-STIRNADKIAVLQQGKV 1220
              +   + E   K++E    TT+MV H +   +   +++ +L  GK+
Sbjct: 181  PKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227

Length = 263

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 69/257 (26%), Positives = 113/257 (43%), Gaps = 42/257 (16%)

Query: 990  QPDDPASKEVTEIKGN---IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 1046
             P+    K+   I+ N   IEL+NVS +   +    I  +L+ +V+ G   A+VG +G+G
Sbjct: 13   LPEPKEPKKRHPIEINEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAG 69

Query: 1047 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRKIGLVQQE--------------- 1090
            K+T++SL+   + P SG V + G           LR++IGLV  E               
Sbjct: 70   KTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVV 129

Query: 1091 -PALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148
                F++  IY+      ED +  +L  A       G        + S        LS G
Sbjct: 130  LSGFFASIGIYQ------EDLTAEDLAAAQWLLELLGAKHLADRPFGS--------LSQG 175

Query: 1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME---GRTTIMVAHRLST 1205
            +++RV IARA++K+P +L+LDE    LD  +   +   L++L         + V H    
Sbjct: 176  EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEE 235

Query: 1206 I-RNADKIAVLQQGKVA 1221
            I        +L++G+V 
Sbjct: 236  IPPCFTHRLLLKEGEVV 252

Length = 257

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 68/248 (27%), Positives = 130/248 (52%), Gaps = 16/248 (6%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I + NVS  Y  +    + ++++L +  G   +++G +G+GKST++S++ R     SG +
Sbjct: 2    ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 1124
             IDG ++ +   + L +K+ +++QE  + S  T+ + + +G    S+  L K        
Sbjct: 59   TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTK-----EDR 113

Query: 1125 GFISRMPEGYQ-SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
              I+   E      + DR + +LSGGQ+QR  IA  + ++   +LLDE  + LD      
Sbjct: 114  RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ 173

Query: 1183 IQEALDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN--GIY 1237
            I + L +L +  G+T ++V H ++     +D I  L+ GKV + GS +++++ E    IY
Sbjct: 174  IMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY 233

Query: 1238 KQLIRLQQ 1245
               I +++
Sbjct: 234  DMDIPVEE 241

Length = 252

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 18/235 (7%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
            +  S V ++   R   + + ++ +   G     +GP+GSGKST++ ++     P +G +
Sbjct: 1   GLRLSRVSWSAGGRL--IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV 58

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQE-PALFATSIANNILLGKED------ASMDRVIEAA 488
            L G DL  L  +    ++ LV Q+       ++ + + LG+                  
Sbjct: 59  DLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVV 118

Query: 489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
             A A + +  L D          + LSGG++QR+ +ARA+ + PK+LLLDE T+ LD  
Sbjct: 119 DRALARTELSHLAD-------RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171

Query: 549 SELIVQRALEKIMSNRTTIVVA-HRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 601
           ++L     + ++ +   T+V A H L+      D ++VL  G+VV +G   ++++
Sbjct: 172 AQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.7 bits (243), Expect = 2e-22
 Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 22/217 (10%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQL 447
           V + +N  +      A +GPSGSGKST++ +  RL E       SG++ LDG D+  + +
Sbjct: 18  VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77

Query: 448 KWLREQMGLVSQEPALFAT-SIANNILLG-------KEDASM-DRVIEAAKAANAHSFVE 498
             LR ++ +V Q P      SI  N+ LG       K    + +RV  A + A       
Sbjct: 78  IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQ------ 131

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
            L D  + ++     +LSGGQ+QR+ IARA+   P++LL DE T+ LD E+   ++    
Sbjct: 132 -LWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190

Query: 559 KIMSNRTTIVVAH-RLSTVRDVDTIMVLKNGQVVESG 594
           ++  + T ++V H      R  D +  L  GQ+VE G
Sbjct: 191 ELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227

Length = 250

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.7 bits (243), Expect = 2e-22
 Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 17/230 (7%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 1060
            IE+R++   +     + + + +NL++      A++G SGSGKST++ +  R  +      
Sbjct: 4    IEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60

Query: 1061 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG---NEDA-SEIELM 1115
            +SG V +DG DI  +++  LRR++ +V Q P      +I+EN+  G   N    S+ EL 
Sbjct: 61   VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120

Query: 1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
            +  + A      +++ +  +  +     +LSGGQ+QR+ IARA+   P +LL DE T+ L
Sbjct: 121  ERVRWALEK---AQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177

Query: 1176 DTASENLIQEALDKLMEGRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIG 1224
            D  +   I+    +L +  T ++V H      R +D +A L +G++ E G
Sbjct: 178  DPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227

Length = 250

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.9 bits (244), Expect = 3e-22
 Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 19/211 (9%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQLK- 448
           ++++  +   +  A +GPSG GKST +  + R+ +        G++   G ++    +  
Sbjct: 56  DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115

Query: 449 -WLREQMGLVSQEPALFATSIANNILLG----KEDASMDRVIEAAKAANAHSFVEGLPDG 503
             LR ++G+V Q+P  F  SI +N+  G      D  +D  +E +    A      L D 
Sbjct: 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAA------LWDE 169

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 563
            + Q+   G  LSGGQ+QR+ IARA+  +P+++L+DE  SALD  +   ++  +E++   
Sbjct: 170 VKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE 229

Query: 564 RTTIVVAHRL-STVRDVD-TIMVLKNGQVVE 592
            T ++V H +    R  D T + L  G++VE
Sbjct: 230 YTVVIVTHNMQQAARISDKTAVFLTGGELVE 260

Length = 285

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 97.1 bits (242), Expect = 3e-22
 Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 39/232 (16%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI---RTLN-- 1076
            T+   ++L+V  G  +A++G SGSGK+T++  +     P +GT+ +    I   R+L+  
Sbjct: 17   TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76

Query: 1077 ---LRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIE---LMKATKAANAHGFISR 1129
               +R LR+ +G V Q   LF   T+ ENI         IE   ++K      A    +R
Sbjct: 77   KGLIRQLRQHVGFVFQNFNLFPHRTVLENI---------IEGPVIVKGEPKEEA---TAR 124

Query: 1130 MPEGYQSHVGDRGVQ------LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
              E   + VG  G +      LSGGQ+QRVAIARA+   P ++L DE TSALD     L+
Sbjct: 125  ARE-LLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP---ELV 180

Query: 1184 QEALDKLM----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
             E L+ +     E RT ++V H +S  R+ AD+   + QG++ E G  + L 
Sbjct: 181  GEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232

Length = 250

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 98.0 bits (244), Expect = 3e-22
 Identities = 72/246 (29%), Positives = 125/246 (50%), Gaps = 28/246 (11%)

Query: 1006 IELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            +++  +++ Y    D T   + +N+ +  G   A++G +G+GKST+   +     P SG 
Sbjct: 6    LKVEELNYNYS---DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR 62

Query: 1065 VLIDG--YDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMKAT 1118
            +L DG   D     L  LR  +G+V Q+P   LFS ++Y+++ +G  N    E E+ K  
Sbjct: 63   ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV 122

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
              A     I         H+ D+    LS GQK+RVAIA  ++  P +L+LDE T+ LD 
Sbjct: 123  DNALKRTGIE--------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP 174

Query: 1178 ASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKV------AEIGSHEQ 1228
               + I + L ++ +  G T I+  H +  +    D + V+++G+V       E+ + ++
Sbjct: 175  MGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 234

Query: 1229 LLRKEN 1234
            +LRK N
Sbjct: 235  MLRKVN 240

Length = 283

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score =  103 bits (259), Expect = 4e-22
 Identities = 63/215 (29%), Positives = 113/215 (52%), Gaps = 17/215 (7%)

Query: 386 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL 445
           +   P ++  +++ SV  GK    +G +GSGKST++  +   +E + G++          
Sbjct: 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV---------- 717

Query: 446 QLKWLREQMGLVSQEPALFATSIANNILL-GKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
              W    +  V Q+  +   ++  NIL   +EDA+  R+ +A + +   + +  L  G 
Sbjct: 718 ---WAERSIAYVPQQAWIMNATVRGNILFFDEEDAA--RLADAVRVSQLEADLAQLGGGL 772

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALEKIMSN 563
           +T++GE G  LSGGQK R+++ARAV  N  + LLD+  SALDA   E +V+      ++ 
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832

Query: 564 RTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVD 598
           +T ++  H++  V   D ++ L +G+V  SG+  D
Sbjct: 833 KTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD 867

Length = 1560

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.0 bits (241), Expect = 5e-22
 Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 24/215 (11%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDL--KSLQLK 448
           +++  ++     A +GPSG GKST +  + R+ +      + G+IL +G ++   ++ + 
Sbjct: 39  DISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98

Query: 449 WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAA--KAANAHSFVEGL 500
            LR ++G+V Q+P  F  SI NNI         +  + +D ++E +  KAA        L
Sbjct: 99  NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA--------L 150

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
            D  + ++      LSGGQ+QR+ IAR +   P +LLLDE  SALD  S   ++  + ++
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210

Query: 561 MSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESG 594
               + I+V H +   +R  D      NG +VE  
Sbjct: 211 KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245

Length = 268

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 97.5 bits (243), Expect = 5e-22
 Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 17/235 (7%)

Query: 377 IEFSEVCFAY----PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
           I    V + Y    P     +F ++N +++ G   AF+G +GSGKSTI+ ++  L+ PT 
Sbjct: 3   INLQNVSYTYQAGTPFEGRALF-DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61

Query: 433 GKILLDGHDL----KSLQLKWLREQMGLVSQ--EPALFATSIANNILLGKEDASMDRVIE 486
           G + +D   +    K+  +K +R+++GLV Q  E  LF  ++  ++  G ++  + +  E
Sbjct: 62  GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQ-EE 120

Query: 487 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
           A   A     + G+ +       +   +LSGGQ +R+AIA  +   PKIL+LDE T+ LD
Sbjct: 121 AEALAREKLALVGISESL---FEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177

Query: 547 AESELIVQRALEKIMSNRTTIV-VAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL 599
            +    +    +K+  +  TIV V H +  V +  D + VL+ G++V SG   D+
Sbjct: 178 PKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232

Length = 280

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 96.6 bits (240), Expect = 5e-22
 Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 24/219 (10%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK 448
           +L+F  +  +  A +GPSG GKST +  + R+ +       +G+I  +G ++    + L 
Sbjct: 24  SLDF--EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81

Query: 449 WLREQMGLVSQEPALFATSIANNILLGKEDASM-------DRVIEAAKAANAHSFVEGLP 501
            LR+++G+V Q+P  F  S+ +N+  G + A +        RV E+ K A        + 
Sbjct: 82  ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQA-------AIW 134

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
              +  +       SGGQ+QRI IARA+   PK++LLDE TSALD  S   ++  L ++ 
Sbjct: 135 KETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194

Query: 562 SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDL 599
              T I+V H L    R  D    L NG ++E+G   ++
Sbjct: 195 HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233

Length = 251

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 98.6 bits (246), Expect = 5e-22
 Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 15/215 (6%)

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL----KSLQLKWLRE 452
            +F++      A  G SGSGK+T+I ++  L  P  G+I+L+G  L    K + L   + 
Sbjct: 16  ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75

Query: 453 QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
           ++G V QE  LF   S+  N+  G     M R   + +  +    +E L  G    +G  
Sbjct: 76  RIGYVFQEARLFPHLSVRGNLRYG-----MKRARPSERRISFERVIELL--GIGHLLGRL 128

Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVV 569
             +LSGG+KQR+AI RA+L +P++LL+DE  +ALD   +  +   LE++ +      + V
Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188

Query: 570 AHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 603
           +H L  V R  D ++VL++G+V  +G   ++ +  
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 95.7 bits (239), Expect = 5e-22
 Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 28/213 (13%)

Query: 389 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK 448
                 ++++F V  G+    +G +G+GKST++ ++  +Y P SG + + G      ++ 
Sbjct: 33  GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------RVS 86

Query: 449 WLRE-----QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDG 503
            L          L  +E         N  LLG     +D  I+         F E L D 
Sbjct: 87  SLLGLGGGFNPELTGRENIYL-----NGRLLGLSRKEIDEKIDE-----IIEFSE-LGDF 135

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 563
               V       S G K R+A A A    P ILL+DE  +  DA  +   QR L +++  
Sbjct: 136 IDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191

Query: 564 -RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
            +T I+V+H  S+++ + D  +VL+ G++   G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 96.1 bits (240), Expect = 6e-22
 Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 27/217 (12%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTI--ISMVQRLYEPTSGKILLDGHDLKSLQL-KWLR 451
           + +N +V  G+  A +GP+GSGKST+    M    YE T G+IL DG D+  L   +  R
Sbjct: 21  KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80

Query: 452 EQMGLVSQEPALFA-------TSIANNILLGKEDASMD---RVIEAAKAANAHSFVEGLP 501
             + L  Q P              A N   G      +    + E A+         GL 
Sbjct: 81  AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELL-------GLD 133

Query: 502 DGYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
           + +  + V EG    SGG+K+R  I + +L  PK+ +LDE  S LD ++  IV   +  +
Sbjct: 134 EEFLERYVNEG---FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL 190

Query: 561 MS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 594
               R  +++ H  RL      D + VL +G++V+SG
Sbjct: 191 REEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227

Length = 251

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 96.8 bits (241), Expect = 8e-22
 Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 25/241 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--- 1062
            +E ++VSF YP         +++  +  G   A++G +GSGKST+  L+     P     
Sbjct: 6    VEFKHVSFTYPDSKK-PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64

Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMKAT 1118
              + +DG  +    +  +R K+G+V Q P       T+ +++ +G  N      E++K  
Sbjct: 65   SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124

Query: 1119 KAANAH----GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174
            +   A      +I   P             LSGGQKQRVAIA  +   P I++LDE+TS 
Sbjct: 125  RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173

Query: 1175 LDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
            LD A +  I + + KL +    T I + H +     AD++ VL  GK+   GS  ++  K
Sbjct: 174  LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233

Query: 1233 E 1233
             
Sbjct: 234  V 234

Length = 282

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 97.1 bits (242), Expect = 8e-22
 Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 21/208 (10%)

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456
           +NF V  G+ F F+GP+G+GK+T I M+  L  PTSG   + G+D+   + + +R  +G+
Sbjct: 12  VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGI 70

Query: 457 VSQEPALFA--TSIANNILLG-----KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
           V Q  ++    T   N  ++G      +D + +R  E  +        E L +     VG
Sbjct: 71  VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE------LFE-LGEAADRPVG 123

Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVV 569
                 SGG ++R+ IA +++  P +L LDE T+ LD  +   +   +  +     TI++
Sbjct: 124 ----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179

Query: 570 -AHRLSTVRDV-DTIMVLKNGQVVESGT 595
             H +     + D I ++ +G+++  GT
Sbjct: 180 TTHYMEEADKLCDRIAIIDHGRIIAEGT 207

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 95.1 bits (237), Expect = 8e-22
 Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 14/225 (6%)

Query: 1006 IELRNVSFKY-PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I    ++ ++  V+  +   + ++  V  G    ++G +G+GK+T + ++    +P +G 
Sbjct: 2    ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 1123
              +DG+D+        RR++G V     L+   T  EN++Y          +   K    
Sbjct: 62   ATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAG-------LYGLKGDEL 113

Query: 1124 HGFISRMPE--GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
               +  + +  G +  +  R    S G +Q+VAIARA++ +P +LLLDE T+ LD  +  
Sbjct: 114  TARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173

Query: 1182 LIQEALDKLMEGRTTIMVA-HRLSTI-RNADKIAVLQQGKVAEIG 1224
             ++E + +L      I+ + H +  + R  D++ VL +G+V   G
Sbjct: 174  ALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score =  101 bits (253), Expect = 8e-22
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 12/222 (5%)

Query: 1006 IELRNVSFKYPV-RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            +EL+++   YP     + + + ++L + AG  +A+VG SGSGKST+++++     P SGT
Sbjct: 5    LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64

Query: 1065 VLIDGYDIRTLN---LRSLRRK-IGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATK 1119
              + G D+ TL+   L  LRR+  G + Q   L S  T  +N++     A    L +  +
Sbjct: 65   YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV---PAVYAGLERKQR 121

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
               A   + R+  G +  V  +  QLSGGQ+QRV+IARA++    ++L DE T ALD+ S
Sbjct: 122  LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179

Query: 1180 ENLIQEALDKLME-GRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
               +   L +L + G T I+V H       A+++  ++ G++
Sbjct: 180  GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221

Length = 648

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 96.0 bits (239), Expect = 9e-22
 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 14/232 (6%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKW 449
           V  N++ S++ G+T   +G SG GKST+  ++  L +P  G +   G DL  L   Q + 
Sbjct: 26  VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85

Query: 450 LREQMGLVSQE-PALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE--GLPDGYQT 506
            R  + LV Q+ P+     +    ++G+    +  + E+ + A     ++  GL      
Sbjct: 86  FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 566
           ++     QLSGGQ QRI IARA+   PK+++LDEA S LD   + ++   L K+     T
Sbjct: 146 KLPR---QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202

Query: 567 --IVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 615
             + + H L  V+     + V+  GQ+VE      L+S   ++ A  NLQS+
Sbjct: 203 AYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF--KHPAGRNLQSA 252

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 95.2 bits (237), Expect = 9e-22
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 18/212 (8%)

Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---L 1077
            ++I + + L V  G ++A+VG SGSGKST+++++    DP SG V + G  +  L+    
Sbjct: 23   LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82

Query: 1078 RSLRRK-IGLVQQEPALFST-TIYENIKYGNE---DASEIELMKATKAANAHGFISRMPE 1132
             +LR + +G V Q   L    T  EN+    E   ++S      A     A G   R+  
Sbjct: 83   AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRL-- 140

Query: 1133 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1192
               +H      QLSGG++QRVA+ARA    P +L  DE T  LD A+ + I + L  L  
Sbjct: 141  ---THYPA---QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194

Query: 1193 GR--TTIMVAHRLSTIRNADKIAVLQQGKVAE 1222
             R  T ++V H        D+   L+ G++ E
Sbjct: 195  ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226

Length = 228

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 98.1 bits (244), Expect = 1e-21
 Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 30/235 (12%)

Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TS 432
           G I    +  AY +    V ++L+  ++AG+  A +G SG GK+T++  +    +    +
Sbjct: 4   GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61

Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAA 491
           G+I +   DL        +  + L+ Q  ALF    + +N+  G     M +   A + A
Sbjct: 62  GRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVA 119

Query: 492 NAHSFVEGLPDGYQTQVGEGGT----QLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
           +A   V          +G+       QLSGG +QRIAIARA+   P +LLLDE  SALDA
Sbjct: 120 DALKLV---------GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDA 170

Query: 548 E------SELIVQRALEKIMSNRTTIVVAH-RLSTVRDVDTIMVLKNGQVVESGT 595
                   E+    AL + +   T + V H +   +   D   ++K+G++   G 
Sbjct: 171 NIRANMREEI---AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 97.4 bits (243), Expect = 1e-21
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 31/212 (14%)

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL----KSLQLKWLRE 452
            NF++ A    A  GPSGSGK+++I+M+  L  P  G+I L+G  L    K + L   + 
Sbjct: 17  ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76

Query: 453 QMGLVSQEPALFA-TSIANNILLGKEDAS---MDRVIEAAKAANAHSFVEGLPDGYQTQV 508
           ++G V Q+  LF   ++  N+  G   +     D+++           +E L D Y    
Sbjct: 77  RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG-------IEHLLDRYPGT- 128

Query: 509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD----AESELIVQRALEKIMSNR 564
                 LSGG+KQR+AI RA+L  P++LL+DE  ++LD     E    ++R  ++I    
Sbjct: 129 ------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI---N 179

Query: 565 TTIV-VAHRLSTV-RDVDTIMVLKNGQVVESG 594
             I+ V+H L  V R  D ++VL+NG+V  SG
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASG 211

Length = 352

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.7 bits (238), Expect = 1e-21
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 20/226 (8%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDL--K 443
           H   +N+N S+   +  A +GPSG GKST I  +  + +       +G++  +G ++   
Sbjct: 25  HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84

Query: 444 SLQLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFV 497
            + L  LR+ +G+V Q+   F  SI +N+  G      K    +  ++E +    A    
Sbjct: 85  KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA---- 140

Query: 498 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 557
             L D  + ++      LSGGQ+QR+ IARA+  NP +LL+DE TSALD  S   ++  +
Sbjct: 141 --LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI 198

Query: 558 EKIMSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGTHVDLISK 602
            K+    T ++V H +    R  D       G++VE      + S 
Sbjct: 199 LKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244

Length = 259

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.8 bits (238), Expect = 1e-21
 Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 27/243 (11%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PI 1061
            E+  ++F Y         +N+N+ V   +  A++G SG GKST +    R +D       
Sbjct: 18   EVNKLNFYYG---GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74

Query: 1062 SGTVLI--DGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-------NEDAS 1110
             G +++  D  +I    ++   +R +I +V Q+P  F  +I+EN+ YG            
Sbjct: 75   EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
            E  +  A + A     +       +  +GD    LSGGQ+QR+ IARA+  +P ILL DE
Sbjct: 135  EERVENALRNAALWDEV-------KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187

Query: 1171 ATSALDTASENLIQEALDKLMEGRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQL 1229
             TSALD  +   I+E +  L    T ++V H +    R +D  A +  G++ E G+ + +
Sbjct: 188  PTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247

Query: 1230 LRK 1232
              K
Sbjct: 248  FIK 250

Length = 265

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 96.3 bits (239), Expect = 1e-21
 Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 11/218 (5%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG-----TVLIDGYDIRTLN 1076
            T+ + +++   A    +++G +GSGK+T +  + R  D +SG      VL+ G  I   N
Sbjct: 35   TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI--FN 92

Query: 1077 LRSL---RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEG 1133
             R +   RR++G++ Q P  F  +I +N+  G      +   +    A A      + + 
Sbjct: 93   YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152

Query: 1134 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG 1193
             +  + D   +LSGGQ+Q + +AR +  NP +LLLDE TSALD  +   I+E +  L + 
Sbjct: 153  VKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR 212

Query: 1194 RTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLL 1230
             T I+V H L+   R +D+ A+   G++ E G  EQL 
Sbjct: 213  LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250

Length = 276

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 97.2 bits (242), Expect = 1e-21
 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 24/223 (10%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI----LLDGHDL------ 442
              N++++ +  K +  +G SGSGKST+++    L +   G I    +  G         
Sbjct: 41  ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100

Query: 443 ------KSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAANAH 494
                 K    K LR ++ +V Q P   LF  +I  +I+ G     + +  EA K A  +
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKK-SEAKKLAKFY 159

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE-LIV 553
               GL D Y   +      LSGGQK+R+AIA  +   P+IL+ DE T+ LD + E  ++
Sbjct: 160 LNKMGLDDSY---LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM 216

Query: 554 QRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           Q  L+   +N+T  V+ H +  V +V D ++V+  G+++++GT
Sbjct: 217 QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259

Length = 320

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 94.4 bits (235), Expect = 1e-21
 Identities = 58/212 (27%), Positives = 110/212 (51%), Gaps = 26/212 (12%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
            ++F V  G+ F  +GP+G+GK+T I M+  L +PTSG+  + GHD+   + + +R ++G
Sbjct: 18  GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76

Query: 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515
           +V Q+ ++      ++ L G E+  +   +     A     ++ L D     + E   +L
Sbjct: 77  IVFQDLSV------DDELTGWENLYIHARLYGVPGAERRERIDELLDFV--GLLEAADRL 128

Query: 516 ----SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVV- 569
               SGG ++R+ IAR+++  P++L LDE T  LD ++   V   +EK+      TI++ 
Sbjct: 129 VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT 188

Query: 570 ------AHRLSTVRDVDTIMVLKNGQVVESGT 595
                 A +L      D + ++ +G+++  GT
Sbjct: 189 THYMEEAEQLC-----DRVAIIDHGRIIAEGT 215

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 94.5 bits (235), Expect = 1e-21
 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 40/218 (18%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084
            + +NL +  G  ++++G SG GKST+++L+     P SG V+++G  I       +    
Sbjct: 2    KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---- 57

Query: 1085 GLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD--- 1140
             +V Q  +L    T+ ENI              A            + +  +  + +   
Sbjct: 58   -VVFQNYSLLPWLTVRENIAL------------AVDRVLPD-----LSKSERRAIVEEHI 99

Query: 1141 -----------RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1189
                       R  QLSGG KQRVAIARA+   P +LLLDE   ALD  +   +QE L +
Sbjct: 100  ALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159

Query: 1190 LME--GRTTIMVAHRL-STIRNADKIAVLQQGKVAEIG 1224
            + E    T +MV H +   +  +D++ +L  G  A IG
Sbjct: 160  IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 93.7 bits (233), Expect = 2e-21
 Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 31/230 (13%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +   ++ F+Y  +P M F+    +   G+  A VGPSGSGKST+++++     P SG++L
Sbjct: 1   VRLDKIRFSYGEQP-MHFD---LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDA----SMDRVIEAAKAA 491
           ++G D+ +         + ++ QE  LFA  ++  N+ LG        + DR  +A + A
Sbjct: 57  INGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDR--QAIEVA 112

Query: 492 NAHSFVEG----LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
            A   + G    LP            +LSGG++QR+A+AR ++R+  +LLLDE  +ALD 
Sbjct: 113 LARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161

Query: 548 ESELIVQRALEKIMSNR--TTIVVAHRLSTVRDVDT-IMVLKNGQVVESG 594
                +   +  + +    T ++V H+    + +   ++ L NG++   G
Sbjct: 162 ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 94.7 bits (235), Expect = 2e-21
 Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 36/235 (15%)

Query: 388 SRPHMVFENLNF-------------SVDAGKTFAFVGPSGSGKSTIISMVQRLYE----- 429
           ++P +  ENLN               +      A +GPSG GKST I  + R+ +     
Sbjct: 9   AQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68

Query: 430 PTSGKILLDGHDL--KSLQLKWLREQMGLVSQEPALFATSIANNILLG-------KEDAS 480
              GK+ ++G D+    + +  LR+ +G+V Q+P  F  SI +N+  G       K+D  
Sbjct: 69  RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKD-- 126

Query: 481 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
           +D V+E A  + A      L D    ++      LSGGQ+QR+ IAR +   PKI+L DE
Sbjct: 127 LDGVVENALRSAA------LWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180

Query: 541 ATSALDAESELIVQRALEKIMSNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESG 594
            TSALD  S   ++  +  +  + T ++V H +    R  D       G+++E G
Sbjct: 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235

Length = 258

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 22/211 (10%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKW 449
           V  ++N  ++ G+     GPSGSGK+T+++++  L     G + + G +L      +L  
Sbjct: 20  VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79

Query: 450 LREQMGLVSQEPALFATSIA-NNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507
           LR  +G + Q   L     A  N+ +  E   ++       +A      V GL D     
Sbjct: 80  LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAV-GLGD----H 134

Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-----ELIVQRALEKIMS 562
           +      LSGGQKQR+AIARA++  PK++L DE T+ALD++S     EL+ + A E+   
Sbjct: 135 LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ--- 191

Query: 563 NRTTIVVAH--RLSTVRDVDTIMVLKNGQVV 591
             T ++V H  R+  V   D I+ +++G+++
Sbjct: 192 GCTILIVTHDNRILDV--ADRIVHMEDGKLL 220

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 36/230 (15%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           +  +L+ S+  GK  A +GP+G GKST++    RL  P SG + L    +  L  + L  
Sbjct: 17  ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76

Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAK----------AANAHSFVEGLPD 502
           ++ L+ Q              L  E  ++  ++   +          +A  ++ V    +
Sbjct: 77  RLALLPQ------------HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME 124

Query: 503 GYQTQVGEGG----TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA--ESELIVQRA 556
             QT++        T LSGGQ+QR  +A  + ++  ++LLDE T+ LD   + EL+    
Sbjct: 125 --QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELM---R 179

Query: 557 LEKIMSN--RTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG 603
           L + ++   +T + V H L+   R  D ++VL NG V+  GT  ++++ G
Sbjct: 180 LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229

Length = 255

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.1 bits (236), Expect = 2e-21
 Identities = 69/248 (27%), Positives = 123/248 (49%), Gaps = 31/248 (12%)

Query: 370 LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429
           + KL   I+ + + F Y ++   + E ++  +   K  A +GPSG GKST +  + R+ E
Sbjct: 1   MSKLIPAIKVNNLSFYYDTQK--ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE 58

Query: 430 PTS-----GKILLDGHDL--KSLQLKWLREQMGLVSQEPALFATSIANNILLG------K 476
             S     G++     ++  + + L  LR Q+ +V  +P LF  S+ +N+  G      +
Sbjct: 59  LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWR 118

Query: 477 EDASMDRVIEAA-KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 535
               +D ++E+A K A+       L D  + ++ +    LSGGQ+QR+ IARA+   PK+
Sbjct: 119 PKLEIDDIVESALKDAD-------LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKV 171

Query: 536 LLLDEATSALDAESELIVQRALE--KIMSNRTTIVVAHRLSTVRDVDTIMVL------KN 587
           LL+DE    LD  + + V+  ++  ++ S  T ++V+H L  V  +            + 
Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRI 231

Query: 588 GQVVESGT 595
           GQ+VE G 
Sbjct: 232 GQLVEFGL 239

Length = 261

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 94.9 bits (236), Expect = 2e-21
 Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 32/242 (13%)

Query: 1008 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067
            LRNVSF+ P R   T+   L+L   AG+   ++G +GSGKST++ ++ R   P  G +L+
Sbjct: 14   LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70

Query: 1068 DGYDIRTLNLRSLRRKIG-LVQQEPALFSTTIYENI------------KYGNEDASEIEL 1114
            D   + + + ++  RK+  L QQ PA    T+ E +            ++G  D  ++E 
Sbjct: 71   DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE- 129

Query: 1115 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174
             +A           R+ +            LSGG++QR  IA  + ++   LLLDE TSA
Sbjct: 130  -EAISLVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177

Query: 1175 LDTASENLIQEALDKLMEGR--TTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLR 1231
            LD A +  +   + +L + R  T I V H ++   R  D +  L+ G++   G+  +L+R
Sbjct: 178  LDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237

Query: 1232 KE 1233
             E
Sbjct: 238  GE 239

Length = 265

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 95.2 bits (236), Expect = 3e-21
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 22/236 (9%)

Query: 377 IEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           +E   + F Y     +     ++FS+  G+  + +G +GSGKST   ++  L+E   GK+
Sbjct: 5   LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASM------DRVIEA 487
            +DG  L +  +  LR ++G+V Q P       ++ +++  G E+  +       RV EA
Sbjct: 65  KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124

Query: 488 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
             A N   F    P            +LSGGQKQR+A+A  +   P+I++LDE+TS LD 
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173

Query: 548 ESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 601
                + R + +I      T + + H L      D I+V+K G++++     +L +
Sbjct: 174 TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229

Length = 277

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 94.4 bits (235), Expect = 3e-21
 Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 19/222 (8%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
            +  S +  +Y  +P    E+++ ++ +G+    +GPSG GK+T+++++     P+ G I
Sbjct: 3   MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAH 494
            L+G  ++         + G+V Q  AL    ++ +N+  G +   +++      A    
Sbjct: 63  QLNGRRIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML 117

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
           + V GL       +     QLSGG +QR+ IARA+   P++LLLDE   ALDA +   +Q
Sbjct: 118 ALV-GLEGAEHKYI----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQ 172

Query: 555 RALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594
             L  +   + +  +++ H      D++  + L    VV S 
Sbjct: 173 ELLLDLWQETGKQVLLITH------DIEEALFLATRLVVLSP 208

Length = 259

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 94.7 bits (235), Expect = 3e-21
 Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 27/249 (10%)

Query: 372 KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-- 429
           +L   I+  ++ F Y +      E ++  +   K  A +GPSG GKST I  + R+ E  
Sbjct: 3   QLIPAIKVKDLSFYYNTSK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE 60

Query: 430 ---PTSGKILLDGHDL--KSLQLKWLREQMGLVSQEPALFATSIANNILLG------KED 478
                 G +   G ++    + +  LR Q+G+V Q P  F  SI  N+  G         
Sbjct: 61  GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQ 120

Query: 479 ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLL 538
           A +D ++E+A    A      L    + ++ +    LSGGQ+QR+ IARA+   PK+LL+
Sbjct: 121 ADLDEIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLM 174

Query: 539 DEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL------KNGQVVE 592
           DE  SALD  + + V+  +  + S  T  +V H +     V            + GQ+VE
Sbjct: 175 DEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234

Query: 593 SGTHVDLIS 601
            G    + S
Sbjct: 235 FGVTTQIFS 243

Length = 259

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 93.9 bits (234), Expect = 3e-21
 Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 32/239 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I+L  ++  Y          ++ L    G +L ++G SG+GKS+++ ++     P SGT+
Sbjct: 3    IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59

Query: 1066 LIDG--YDIRTLN----LRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIE----- 1113
             I G  +D         +R LRR +G+V Q+  L+   T+ +N+         IE     
Sbjct: 60   NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNL---------IEAPCRV 110

Query: 1114 --LMKATKAANAHGFISRMPEGYQSHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDE 1170
              L K    A A   + R+         DR  + LSGGQ+QRVAIARA++  P +LL DE
Sbjct: 111  LGLSKDQALARAEKLLERL---RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE 167

Query: 1171 ATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1227
             T+ALD      I   + +L E G T ++V H +   R  A ++  ++ G + E G   
Sbjct: 168  PTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226

Length = 242

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 65/228 (28%), Positives = 119/228 (52%), Gaps = 33/228 (14%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450
            +V ++++  +  G   + +GP+G+GKST++SM+ RL +  SG+I +DG +L S   K L
Sbjct: 14  KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKEL 73

Query: 451 REQMGLVSQEPALFATSIANNIL-----------LGKEDAS-MDRVIEAAKAANAHSFVE 498
            +++ ++ QE  + +     +++           L KED   ++  IE          +E
Sbjct: 74  AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH-------LE 126

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL----IVQ 554
            L D Y         +LSGGQ+QR  IA  + ++   +LLDE  + LD +  +    I++
Sbjct: 127 DLSDRYL-------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179

Query: 555 RALEKIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 601
           R  +++   +T +VV H ++      D I+ LKNG+VV+ G+  ++I 
Sbjct: 180 RLADEL--GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225

Length = 252

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 92.7 bits (231), Expect = 4e-21
 Identities = 53/218 (24%), Positives = 107/218 (49%), Gaps = 15/218 (6%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+ NV+ ++     +T  ++++  V  G    ++G +G+GK+T I +++    P SG V
Sbjct: 1    LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANAH 1124
            L DG  +        R +IG + +E  L+    + + + Y    A    L K        
Sbjct: 58   LFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVYL---AQLKGLKKEEARRRID 110

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
             ++ R+      +   R  +LS G +Q+V    A++ +P +L+LDE  S LD  +  L++
Sbjct: 111  EWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168

Query: 1185 EALDKLME-GRTTIMVAHRLSTI-RNADKIAVLQQGKV 1220
            + + +L   G+T I+  H++  +    D++ +L +G+ 
Sbjct: 169  DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 93.2 bits (232), Expect = 4e-21
 Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 30/223 (13%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP----TSGKILLDGHDLKSLQLKWLR 451
           +LN S+  G+  A VG SGSGKS     +  L  P    TSG+ILLDG  L  L ++   
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62

Query: 452 EQMGLVSQEP-----ALFATSIANNIL-----LGK-EDASMDRVIEAAKAANAHSFVEGL 500
             +  + Q P      LF  ++ N+ +     LGK    +   ++EA +A        GL
Sbjct: 63  -HIATIMQNPRTAFNPLF--TMGNHAIETLRSLGKLSKQARALILEALEAV-------GL 112

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
           PD  +  + +   QLSGG  QR+ IA A+L  P  L+ DE T+ LD  ++  V + L ++
Sbjct: 113 PDPEEV-LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171

Query: 561 MSNRTT--IVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLI 600
                T  +++ H L  V R  D + V+ +G++VE GT  ++ 
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 94.1 bits (234), Expect = 4e-21
 Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 8/217 (3%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 1081
             I + +++    G    ++G +GSGKST++ L+     P +GTV + G D+  L+ R+  
Sbjct: 15   LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74

Query: 1082 RKIGLVQQE-PALFSTTIYENIKYGN-EDASEIELMKATKAANAHGFISRMPEGYQSHVG 1139
            R++ LV+Q+       T+ + +  G     S         AA     ++R      SH+ 
Sbjct: 75   RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE---LSHLA 131

Query: 1140 DRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIM 1198
            DR +  LSGG++QRV +ARA+ + P +LLLDE T+ LD  ++      + +L     T++
Sbjct: 132  DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191

Query: 1199 VA-HRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
             A H L+      D + VL  G+V   G   ++L   
Sbjct: 192  AALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA 228

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 92.8 bits (231), Expect = 4e-21
 Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 29/236 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+ N+  KY    D      ++ +V  G    ++G +G+GK+T I ++     P SG  
Sbjct: 1    IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIK-------YGNEDASEIELMKA 1117
             + G+D+     R +RR+IG+V Q+ ++    T +EN+            +  E      
Sbjct: 58   TVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE------ 110

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
             +      F+  +         DR V+  SGG ++R+ IAR+++  P +L LDE T  LD
Sbjct: 111  -RIDELLDFVGLL------EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163

Query: 1177 TASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
              +   + E ++KL E  G T ++  H +       D++A++  G++   G+ E+L
Sbjct: 164  PQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 98.5 bits (246), Expect = 4e-21
 Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 49/225 (21%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I L N+S  Y  RP   + EN++L ++ G  + +VG++G+GKST++ ++    +P SG V
Sbjct: 4    ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIEL-MKATKAANA 1123
                       LR     +G + QEP L    T+ + +  G  +  E+   ++   A  A
Sbjct: 61   TRPK------GLR-----VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109

Query: 1124 HGFISRMPE---------GYQ---------SHVGDRGVQ-----LSGGQKQRVAIARAIL 1160
                  + E         G+            +G          LSGG ++RVA+ARA+L
Sbjct: 110  DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169

Query: 1161 KNPSILLLDEATSALDTAS----ENLIQEALDKLMEGRTTIMVAH 1201
            + P +LLLDE T+ LD  S    E+ ++        G T I+V+H
Sbjct: 170  EEPDLLLLDEPTNHLDLESIEWLEDYLKR-----YPG-TVIVVSH 208

Length = 530

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 94.1 bits (235), Expect = 4e-21
 Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 38/249 (15%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E RN+S +   R   T+ ++++L +  G  +A++G +G+GKST++  +     P SG V
Sbjct: 3    LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIKYG------NEDASEIELMKAT 1118
             ++G  +   +   L R+  ++ Q  +L F  T+ E +  G      +    +  +  A 
Sbjct: 60   RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL------KNPSILLLDEAT 1172
               +      R    Y         QLSGG++QRV +AR +         P  LLLDE T
Sbjct: 120  AQVDLAHLAGRD---YP--------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168

Query: 1173 SALDTASENLIQEALDKLM------EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGS 1225
            SALD A     Q  + +L        G   I+V H L+   R AD+I +L QG++   G+
Sbjct: 169  SALDLAH----QHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224

Query: 1226 HEQLLRKEN 1234
              ++L  E 
Sbjct: 225  PAEVLTPET 233

Length = 258

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 96.4 bits (240), Expect = 5e-21
 Identities = 64/191 (33%), Positives = 101/191 (52%), Gaps = 26/191 (13%)

Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451
              ++++ ++  G+ FA +G SG GKST++ M+    +PT+G+I+LDG DL S    + R
Sbjct: 33  HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL-SHVPPYQR 91

Query: 452 EQMGLVSQEPALFA-TSIANNILLG-KED-----ASMDRVIEAAKAANAHSFVEGLPDGY 504
             + ++ Q  ALF   ++  NI  G K+D         RV E     +   F +  P   
Sbjct: 92  P-INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-- 148

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE----SELIVQRALEKI 560
                    QLSGGQ+QR+A+AR++ + PK+LLLDE   ALD +     +L V   LE++
Sbjct: 149 ---------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV 199

Query: 561 MSNRTTIVVAH 571
               T ++V H
Sbjct: 200 --GVTCVMVTH 208

Length = 377

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 92.8 bits (231), Expect = 5e-21
 Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 30/216 (13%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKW 449
           + + +   V  G+T A VGPSGSGKST+++++  L +P+SG++ L G  L  L       
Sbjct: 25  ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84

Query: 450 LR-EQMGLVSQEPALFATSIA-NNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507
           LR   +G V Q   L     A  N+ L  E       +    +A++ +  + L +     
Sbjct: 85  LRARHVGFVFQSFHLIPNLTALENVALPLE-------LRGESSADSRAGAKALLE----A 133

Query: 508 VGEGG------TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-----SELIVQRA 556
           VG G        QLSGG++QR+A+ARA    P +L  DE T  LD       ++L+    
Sbjct: 134 VGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN 193

Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 592
            E+     T ++V H        D  + L++G++VE
Sbjct: 194 RERGT---TLVLVTHDPQLAARCDRQLRLRSGRLVE 226

Length = 228

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 93.6 bits (232), Expect = 6e-21
 Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 30/237 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----P 1060
            I++ N+SF Y  +    I E +++++   +  A++G SG GKST +  + R  +      
Sbjct: 8    IKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64

Query: 1061 ISGTVLIDGYDI--RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS---EIEL- 1114
            + G V     +I  R +NL  LRR++ +V  +P LF  ++Y+N+ YG +      ++E+ 
Sbjct: 65   VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124

Query: 1115 ---MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
                 A K A+       + +  +  +    + LSGGQ+QR+ IARA+   P +LL+DE 
Sbjct: 125  DIVESALKDAD-------LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177

Query: 1172 TSALDTAS----ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1224
               LD  +    E+LIQ    +L    T ++V+H L  +          +G    IG
Sbjct: 178  CFGLDPIASMKVESLIQSL--RLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIG 232

Length = 261

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 93.5 bits (232), Expect = 6e-21
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 32/244 (13%)

Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDL--KS 444
           M   + +  +   +   F+GPSG GKST++  + R+ +        G +   G D+  K 
Sbjct: 22  MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81

Query: 445 LQLKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVE 498
           +    +R  +G+V Q+P  F+ SI +N+  G      K D   DRV  A + A       
Sbjct: 82  VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLG-DRVKHALQGA------- 133

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
            L D  + ++   G  LSGGQ+QR+ IARA+   P++LLLDE  SALD  +   V+  + 
Sbjct: 134 ALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV 193

Query: 559 KIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL-QSSEH 617
           ++  + T  +V H +     V       +         VD IS+G     LV +  +++ 
Sbjct: 194 ELKKDYTIALVTHNMQQAIRVADTTAFFS---------VD-ISQGTRTGYLVEMGPTAQI 243

Query: 618 LSNP 621
             NP
Sbjct: 244 FQNP 247

Length = 261

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 93.1 bits (232), Expect = 7e-21
 Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 36/216 (16%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450
               ++++F +  G+    +G +G+GKST++ ++  +Y+PTSGK+ + G      ++  L
Sbjct: 40  FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG------KVAPL 93

Query: 451 RE-----QMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGY 504
            E        L  +E       I    L  KE D  +D +IE         F E L D  
Sbjct: 94  IELGAGFDPELTGRENIYLRGLILG--LTRKEIDEKVDEIIE---------FAE-LGDFI 141

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-- 562
              V       S G   R+A + A    P ILLLDE  +  DA      ++ LE++    
Sbjct: 142 DQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA---FQEKCLERLNELV 194

Query: 563 --NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
             N+T ++V+H L  ++   D  + L++GQ+   G+
Sbjct: 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230

Length = 249

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 93.2 bits (232), Expect = 8e-21
 Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 35/247 (14%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I   N+S+    R    + + ++L +  G  LA++G +G+GKST++  +     P SG V
Sbjct: 2    IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58

Query: 1066 LIDGYDIRTLNLRSLRRKIG-LVQQEPALFSTTIYENIKYG----------NEDASEIEL 1114
             ++G  + +     L R    L Q     F  T+ E ++ G           ED      
Sbjct: 59   TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA- 117

Query: 1115 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR------AILKNPSILLL 1168
             +A  A +  G   R    Y+         LSGG++QRV +AR        + +   L L
Sbjct: 118  -QALAATDLSGLAGRD---YR--------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFL 165

Query: 1169 DEATSALDTA-SENLIQEALDKLMEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSH 1226
            DE TSALD A   + ++ A     EG   + V H L+   + AD+I +L QG+V   GS 
Sbjct: 166  DEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225

Query: 1227 EQLLRKE 1233
            + +L  E
Sbjct: 226  QDVLTDE 232

Length = 259

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 92.0 bits (229), Expect = 9e-21
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 21/220 (9%)

Query: 384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443
           F    +     + ++F+V  G+    +GP+G+GK+T + M+  L EP +G   +DG D+ 
Sbjct: 11  FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV 70

Query: 444 SLQLKWLREQMGLVSQEPALFA--TSIANNILLG-----KEDASMDRVIEAAKAANAHSF 496
               +  R ++G VS    L+   T+  N          K D    R+ E A        
Sbjct: 71  KEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL 129

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           ++        +VG      S G +Q++AIARA++ +P +LLLDE T+ LD  +   ++  
Sbjct: 130 LD-------RRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178

Query: 557 LEKIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQVVESG 594
           + ++ +    I+ + H +  V  + D ++VL  G+VV  G
Sbjct: 179 IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 92.1 bits (229), Expect = 9e-21
 Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 38/213 (17%)

Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451
               N++ +V     +  +GP+G+GKST++ M+  +  PTSG+I+ DGH        W R
Sbjct: 14  TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP-------WTR 66

Query: 452 ---EQMGLVSQEPALFATSIANN------ILLGKEDASMDRVIEAAKAANAHSFVEGLPD 502
               ++G + + P L+    A         LLG  D+ +D V+           +  L +
Sbjct: 67  KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLN----------IVDLTN 116

Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 562
             + +      Q S G KQR+ IA A+L +PK+L+LDE T+ LD    + +Q   E I S
Sbjct: 117 TGKKKAK----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP---IGIQELRELIRS 169

Query: 563 ----NRTTIVVAHRLSTVRDV-DTIMVLKNGQV 590
                 T I+ +H LS V+ + D I ++  G +
Sbjct: 170 FPEQGITVILSSHILSEVQQLADHIGIISEGVL 202

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 23/215 (10%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           V  +++  + +G+  A +GPSGSGK+T++ ++  L   TSG I   G D+  L  +    
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DR 74

Query: 453 QMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFV--EGLPDG 503
           ++G V Q  ALF   ++ +NI  G      +E  +   +   AK       V    L D 
Sbjct: 75  KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAI--KAKVTQLLEMVQLAHLADR 132

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 563
           Y         QLSGGQKQR+A+ARA+   P+ILLLDE   ALDA+    ++R L ++   
Sbjct: 133 YP-------AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185

Query: 564 R--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
              T++ V H      +V D ++V+  G + ++GT
Sbjct: 186 LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220

Length = 353

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 93.2 bits (231), Expect = 1e-20
 Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 17/210 (8%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQLKW- 449
           +++  + A K  AF+GPSG GKST++    R+ +        G++L    ++   Q+   
Sbjct: 38  DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97

Query: 450 -LREQMGLVSQEPALFATSIANNILLGKE----DASMDRVIEAAKAANAHSFVEGLPDGY 504
            LR Q+G+V Q P  F  SI  NI           ++D ++E +    A      + +  
Sbjct: 98  KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAA------IWEEV 151

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564
           + ++ E GT LSGGQ+QR+ IARA+   P +LL+DE  SALD  S   V+    ++    
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY 211

Query: 565 TTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594
           T I+V H +     V       N ++ E G
Sbjct: 212 TIIMVTHNMQQASRVADWTAFFNTEIDEYG 241

Length = 274

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 18/255 (7%)

Query: 355 ENSHSSERPGDDGIT----LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFV 410
           E+S   E P          +      IE   V      +   +  +L++ V+ G+ +A V
Sbjct: 6   ESSRGVELPEPKEPKKRHPIEINEPLIELKNVSVRRNGKK--ILGDLSWQVNPGEHWAIV 63

Query: 411 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMGLVS---QEPALFAT 466
           GP+G+GK+T++S++   + P+SG + L G      +  + LR+++GLVS    E      
Sbjct: 64  GPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE 123

Query: 467 SIANNILLGKEDASM--DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA 524
           ++ + +L G   +       + A   A A   +E L   +      G   LS G+++R+ 
Sbjct: 124 TVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG--SLSQGEQRRVL 181

Query: 525 IARAVLRNPKILLLDEATSALDAES-ELIVQRALEKIMSNRTT--IVVAHRLSTVRDVDT 581
           IARA++++P++L+LDE    LD  + E ++ R  E   S      + V H    +    T
Sbjct: 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFT 241

Query: 582 -IMVLKNGQVVESGT 595
             ++LK G+VV  G 
Sbjct: 242 HRLLLKEGEVVAQGK 256

Length = 257

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 92.9 bits (231), Expect = 1e-20
 Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 18/232 (7%)

Query: 1006 IELRNVSFKYPV------RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 1059
            +E+R+V+  Y        +    +  N++L +  G ++ ++G+SG GKST+  L++    
Sbjct: 3    LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62

Query: 1060 PISGTVLIDGYDIRTLN---LRSLRRKIGLV-QQEPALFS--TTIYENIKYGNEDASEIE 1113
            P  GTV   G D+  L+    R+ RR + LV Q  P+  +   T+ + I    E    + 
Sbjct: 63   PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG---EPLRHLT 119

Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
             +  ++       +  M             QLSGGQ QR+ IARA+   P +++LDEA S
Sbjct: 120  SLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179

Query: 1174 ALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVAE 1222
             LD   + +I E L KL +  G   + + H L  +     ++AV+ +G++ E
Sbjct: 180  NLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 93.2 bits (231), Expect = 1e-20
 Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 7/216 (3%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-----KILLDGHDLKSLQ- 446
           V + ++    A    + +GP+GSGK+T +  + R+ +  SG      +LL G  + + + 
Sbjct: 36  VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95

Query: 447 LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 506
           +   R ++G++ Q P  F  SI +N+L G     +    E    A A     GL D  + 
Sbjct: 96  VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 566
           ++ +   +LSGGQ+Q + +AR +  NP++LLLDE TSALD  +   ++  +  +    T 
Sbjct: 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTV 215

Query: 567 IVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 601
           I+V H L+   R  D   +  +G++VE G    L S
Sbjct: 216 IIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251

Length = 276

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 91.8 bits (229), Expect = 1e-20
 Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 14/233 (6%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +   N+S +Y  R    +   ++L V  G  + ++G +G+GK+T   +++    P SG +
Sbjct: 1    LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57

Query: 1066 LIDGYDIRTLNL-RSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANA 1123
            L+DG DI  L + +  R  IG + QE ++F   T+ ENI       + +E+   +K    
Sbjct: 58   LLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENIL------AVLEIRGLSKKERE 111

Query: 1124 HGFISRMPEGYQSHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
                  + E + +H+       LSGG+++RV IARA+  NP  LLLDE  + +D  +   
Sbjct: 112  EKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171

Query: 1183 IQEALDKLMEGRTTIMVA-HRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
            IQ+ +  L +    +++  H +  T+   D+  ++ +GKV   G+ E++   E
Sbjct: 172  IQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 90.9 bits (225), Expect = 2e-20
 Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 8/200 (4%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----R 451
           N+N  +  G+    VG  G GKS+++  +    +   GK+     +      +      R
Sbjct: 19  NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78

Query: 452 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
             +   +Q+P L   ++  NI  G    +  R      A +    ++ LP G QT++GE 
Sbjct: 79  YSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGER 137

Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALEKIMSN--RTTIV 568
           G  LSGGQ+QRI +ARA+ +N  I+ LD+  SALD   S+ ++Q  + K + +  RT ++
Sbjct: 138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVL 197

Query: 569 VAHRLSTVRDVDTIMVLKNG 588
           V H+L  +   D I+ +K+G
Sbjct: 198 VTHKLQYLPHADWIIAMKDG 217

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 92.4 bits (229), Expect = 2e-20
 Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 20/220 (9%)

Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQ 446
             N+N  +      A +GPSG GKST +  + R+ +        G ++ +G ++ S    
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82

Query: 447 LKWLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGL 500
           +  LR ++G+V Q P  F  SI +NI  G      K+   +D ++E +   +A      L
Sbjct: 83  ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSA------L 136

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
            +  + ++      LSGGQ+QR+ IAR +   P ++L+DE TSALD  S   ++  +  +
Sbjct: 137 WNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196

Query: 561 MSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDL 599
             + T I+V H +    R  D      NG + E  +  +L
Sbjct: 197 KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236

Length = 254

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 92.6 bits (230), Expect = 2e-20
 Identities = 63/220 (28%), Positives = 119/220 (54%), Gaps = 23/220 (10%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           + ++F++  G+T A +G +GSGKST+  M+  + EPTSG+IL++ H L      +  +++
Sbjct: 30  KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRI 89

Query: 455 GLVSQEPALFATSIANNILLG-------KEDASMDRVIEAAKAANAHSFVEGLPD--GYQ 505
            ++ Q+P    TS+   + +G       + +  ++      +       V  LPD   Y 
Sbjct: 90  RMIFQDP---NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY 146

Query: 506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA--ESELI-VQRALEKIMS 562
             +      L+ GQKQR+A+ARA++  PKI++ DEA ++LD    S+LI +   L++   
Sbjct: 147 PHM------LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200

Query: 563 NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
             + I V   +  ++ + D ++V+  G+VVE G+  D+++
Sbjct: 201 -ISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239

Length = 267

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 91.6 bits (227), Expect = 3e-20
 Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 35/235 (14%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----- 445
           H V + ++   +AG   + +G SGSGKST +  +  L +P+ G I+++G  +  +     
Sbjct: 18  HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77

Query: 446 --------QLKWLREQMGLVSQEPALFA-TSIANNIL--------LGKEDASMDRVIEAA 488
                   QL+ LR ++ +V Q   L++  ++  N++        L K++A    V   A
Sbjct: 78  QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLA 137

Query: 489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
           K         G+ +  Q   G+    LSGGQ+QR++IARA+   P++LL DE TSALD E
Sbjct: 138 KV--------GIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186

Query: 549 SELIVQRALEKIMSN-RTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGTHVDLIS 601
               V R ++++    +T +VV H +   R V + ++ L  G++ E G    L  
Sbjct: 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241

Length = 257

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 92.2 bits (229), Expect = 3e-20
 Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 19/229 (8%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           ++  E+ + Y    H   + +N ++  G+  A +G +G+GKST+   +  + +P+SG+IL
Sbjct: 6   LKVEELNYNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64

Query: 437 LDGH--DLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASM--DRVIEAAKA 490
            DG   D     L  LRE +G+V Q+P   LF+ S+  ++  G  +  +  D V +    
Sbjct: 65  FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124

Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-- 548
           A   + +E L D       +    LS GQK+R+AIA  ++  PK+L+LDE T+ LD    
Sbjct: 125 ALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177

Query: 549 SELIVQRALEKIMSNRTTIVVA-HRLSTVR-DVDTIMVLKNGQVVESGT 595
           SE I++  +E       TI++A H +  V    D + V+K G+V+  G 
Sbjct: 178 SE-IMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225

Length = 283

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 91.5 bits (228), Expect = 3e-20
 Identities = 70/257 (27%), Positives = 112/257 (43%), Gaps = 33/257 (12%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--YDPISGT 1064
            E++++  +  V     I + +NL V  G   A++G +GSGKST+   +M    Y+   G 
Sbjct: 5    EIKDLHVE--VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62

Query: 1065 VLIDGYDIRTL--NLRSLRRKIGLVQQEPALFS--------TTIYENIKYGNEDASE-IE 1113
            +L DG DI  L  + R+ R  I L  Q P                   +       E I+
Sbjct: 63   ILFDGEDILELSPDERA-RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIK 121

Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRGVQ--LSGGQKQRVAIARAILKNPSILLLDEA 1171
             +K  KA         + E +     +R V    SGG+K+R  I + +L  P + +LDE 
Sbjct: 122  ELKE-KAELL-----GLDEEFL----ERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171

Query: 1172 TSALDTASENLIQEALDKLM-EGRTTIMVAHR---LSTIRNADKIAVLQQGKVAEIGSHE 1227
             S LD  +  ++ E ++ L  EGR  +++ H    L  I+  DK+ VL  G++ + G  E
Sbjct: 172  DSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSGDPE 230

Query: 1228 QLLRKENGIYKQLIRLQ 1244
                 E   Y  L  + 
Sbjct: 231  LAEELEEKGYDWLKEVV 247

Length = 251

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 95.8 bits (239), Expect = 3e-20
 Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 33/201 (16%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E  NVS  Y       + ++L+ ++  G  +A+VG +G+GKST++ L+     P+SGTV
Sbjct: 322  LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALF--STTIYENIKYGNEDASEIELMKATKAANA 1123
                       +     KIG   Q         T+ E +  G  D  E E          
Sbjct: 380  ------KVGETV-----KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQE---------V 419

Query: 1124 HGFISRM---PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
              ++ R     E  +  VG     LSGG+K R+ +A+ +L+ P++LLLDE T+ LD  S 
Sbjct: 420  RAYLGRFGFTGEDQEKPVGV----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475

Query: 1181 NLIQEALDKLMEGRTTIMVAH 1201
              ++EAL    EG T ++V+H
Sbjct: 476  EALEEALLDF-EG-TVLLVSH 494

Length = 530

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 91.6 bits (227), Expect = 3e-20
 Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 30/225 (13%)

Query: 1028 NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDI--RTLNLRSL 1080
            ++ +        +G SG GKSTV+  + R  D +      G V   G D+  + ++   +
Sbjct: 28   HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87

Query: 1081 RRKIGLVQQEPALFSTTIYENIKYG------NEDASEIELMKATKAANAHGFISRMPEGY 1134
            RR IG+V Q+P  FS +I++N+ +G        D  +        AA        + +  
Sbjct: 88   RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA--------LWDEV 139

Query: 1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR 1194
            +  +   G+ LSGGQ+QR+ IARAI   P +LLLDE  SALD  +   ++E + +L +  
Sbjct: 140  KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDY 199

Query: 1195 TTIMVAHRL-STIRNADKIAVL--------QQGKVAEIGSHEQLL 1230
            T  +V H +   IR AD  A          + G + E+G   Q+ 
Sbjct: 200  TIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244

Length = 261

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 90.7 bits (226), Expect = 3e-20
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 26/230 (11%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-LRSL 1080
             I   ++L+V  G    V+G++G GK+T++  +M      SG++ +DG DI  L      
Sbjct: 14   HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73

Query: 1081 RRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY----- 1134
            R  I  V Q   +F   T+ EN+  G         + A    +         E Y     
Sbjct: 74   RAGIAYVPQGREIFPRLTVEENLLTG---------LAALPRRSRK----IPDEIYELFPV 120

Query: 1135 -QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL--M 1191
             +  +G RG  LSGGQ+Q++AIARA++  P +LLLDE T  +  +    I   + +L   
Sbjct: 121  LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180

Query: 1192 EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240
             G   ++V   L   R  AD+  V+++G+V   G+ ++L   E+ + + L
Sbjct: 181  GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL--DEDKVRRYL 228

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 91.0 bits (226), Expect = 4e-20
 Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 22/215 (10%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PTS---GKILLDGHDLKSLQLKW- 449
           +++   +  +  A +GPSG GKST +  + R+ +  P +   G+ILLDG ++    +   
Sbjct: 24  DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83

Query: 450 -LREQMGLVSQEPALFATSIANNILLG------KEDASM-DRVIEAAKAANAHSFVEGLP 501
            LR ++G+V Q+P  F  SI  N+  G      K+ A + +RV  + + A        L 
Sbjct: 84  ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHA-------ALW 136

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
           D  + ++ E    LSGGQ+QR+ IARA+   P++LL+DE  SALD  +   ++  + ++ 
Sbjct: 137 DEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK 196

Query: 562 SNRTTIVVAHRL-STVRDVDTIMVLKNGQVVESGT 595
           +  T I+V H +    R  D       G+++E G 
Sbjct: 197 ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGP 231

Length = 253

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 92.2 bits (229), Expect = 5e-20
 Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 37/216 (17%)

Query: 408 AFVGPSGSGKSTIISMVQRLYEPTS-----GKILLDGHDL--KSLQLKWLREQMGLVSQE 460
           A +GPSG GKST +  + R+ +        G + LDG D+    + L  LR+++G+V Q 
Sbjct: 75  ALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQS 134

Query: 461 PALFATSIANNI-----------------LLGKEDA-SMDRVIEAA--KAANAHSFVEGL 500
           P  F  SI  NI                 LLG++D  + D ++E +  +AA        L
Sbjct: 135 PNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA--------L 186

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
            D    ++ +    LSGGQ+QR+ IAR +  +P+++L+DE  SALD  +   ++  +E++
Sbjct: 187 WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL 246

Query: 561 MSNRTTIVVAHRLSTVRDVD--TIMVLKNGQVVESG 594
               T +VV H +     +   T + L  G++VE  
Sbjct: 247 AEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYD 282

Length = 305

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 90.7 bits (225), Expect = 5e-20
 Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 29/222 (13%)

Query: 1027 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRKIG 1085
            L+ +V AG  L +VG +G+GKST+++  M      SG++   G  +   +   L R +  
Sbjct: 18   LSGEVRAGEILHLVGPNGAGKSTLLA-RMAGMTSGSGSIQFAGQPLEAWSATELARHRAY 76

Query: 1086 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQL 1145
            L QQ+   F+  ++  +     D +  EL+     A A     ++             QL
Sbjct: 77   LSQQQTPPFAMPVWHYLTLHQPDKTRTELL--NDVAGALALDDKLGRSTN--------QL 126

Query: 1146 SGGQKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKLME-----G 1193
            SGG+ QRV +A  +L+     NP+  +LLLDE  ++LD A ++    ALD+L+      G
Sbjct: 127  SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS----ALDRLLSALCQQG 182

Query: 1194 RTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
               +M +H L+ T+R+A +  +L++GK+   G  E++L    
Sbjct: 183  LAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPV 224

Length = 248

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 89.1 bits (222), Expect = 5e-20
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 43/209 (20%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTI--ISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450
           + + +N ++  G+  A +GP+GSGKST+    M    YE T G+IL  G D+  L  +  
Sbjct: 15  ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-E 73

Query: 451 REQMG--LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV 508
           R ++G  L  Q P                       I   K A+   F+          V
Sbjct: 74  RARLGIFLAFQYPP---------------------EIPGVKNAD---FLRY--------V 101

Query: 509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTI 567
            EG    SGG+K+R  I + +L  P + +LDE  S LD ++  +V   + K+    ++ +
Sbjct: 102 NEG---FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVL 158

Query: 568 VVAH--RLSTVRDVDTIMVLKNGQVVESG 594
           ++ H  RL      D + VL +G++V+SG
Sbjct: 159 IITHYQRLLDYIKPDRVHVLYDGRIVKSG 187

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 89.2 bits (222), Expect = 6e-20
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 29/224 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            ++  +++  Y       + ++++L V  G     +G +G+GK+T + +++    P SG +
Sbjct: 1    LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 1124
              DG            R+IG + + P  +   T  EN++                 A   
Sbjct: 58   TFDGKS--YQKNIEALRRIGALIEAPGFYPNLTARENLRLL---------------ARLL 100

Query: 1125 GFISR-----MPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            G   +     +          + V   S G KQR+ IA A+L NP +L+LDE T+ LD  
Sbjct: 101  GIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160

Query: 1179 SENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220
                ++E +  L  +G T ++ +H LS I+  AD+I ++ +GK+
Sbjct: 161  GIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 90.4 bits (225), Expect = 6e-20
 Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 41/230 (17%)

Query: 1027 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRKIG 1085
            L+ +V AG  L +VG +G+GKST+++  M    P SG++   G  +   +   L R +  
Sbjct: 15   LSAEVRAGEILHLVGPNGAGKSTLLA-RMAGLLPGSGSIQFAGQPLEAWSAAELARHRAY 73

Query: 1086 LVQQEPALFSTTIYENIKY--------GNEDASEIELMKATKAANAHGFISRMPEGYQSH 1137
            L QQ+   F+  +++   Y           +A    L +  +A      + R        
Sbjct: 74   LSQQQTPPFAMPVFQ---YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRS------- 123

Query: 1138 VGDRGVQLSGGQKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKL 1190
            V     QLSGG+ QRV +A  +L+     NP+  +LLLDE  ++LD A +     ALD+L
Sbjct: 124  VN----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA----ALDRL 175

Query: 1191 ME-----GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
            +      G   +M +H L+ T+R+AD++ +L+QGK+   G  +++L  EN
Sbjct: 176  LSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225

Length = 248

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 90.3 bits (224), Expect = 8e-20
 Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 26/222 (11%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSL 445
           + V + ++  +     FA +GPSG GKST++    RL E        G++ L G ++ S 
Sbjct: 17  NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76

Query: 446 QLKWL--REQMGLVSQEPALFA-TSIANNILLG-------KEDASMDRVIEAA--KAANA 493
            +  +  R ++G+V Q P  F   +I +N+ +G       K    +D  +E A  KAA  
Sbjct: 77  DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA-- 134

Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
                 L D  + ++ +  + LSGGQ+QR+ IARA+   PKILL+DE T+ +D      +
Sbjct: 135 ------LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI 188

Query: 554 QRALEKIMSNRTTIVVAHR-LSTVRDVDTIMVLKNGQVVESG 594
           +  L ++    T ++V H      R  D +  L  G+++E G
Sbjct: 189 EELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230

Length = 253

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 89.3 bits (222), Expect = 8e-20
 Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 13/210 (6%)

Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM---RFYDPISGTVLIDGYDIRTLNLRS 1079
            I  +++L V +G+ +A++G SGSGK+T++  +          SG +L +G   +      
Sbjct: 22   ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG---QPRKPDQ 78

Query: 1080 LRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHV 1138
             ++ +  V+Q+  L    T+ E + Y        +   A +          + +   + +
Sbjct: 79   FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE--DVLLRDLALTRI 136

Query: 1139 GDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTT 1196
            G   V+ +SGG+++RV+IA  +L +P +L+LDE TS LD+ +   +   L +L    R  
Sbjct: 137  GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196

Query: 1197 IMVAH--RLSTIRNADKIAVLQQGKVAEIG 1224
            I+  H  R    R  D+I +L  G++   G
Sbjct: 197  ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 90.9 bits (225), Expect = 9e-20
 Identities = 68/237 (28%), Positives = 127/237 (53%), Gaps = 15/237 (6%)

Query: 377 IEFSEVCFAY-PSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
           I+F +V + Y P+ P       +++  V  G   A +G +GSGKST++  +  L +PT G
Sbjct: 2   IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61

Query: 434 KI----LLDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDRVIEA 487
           K+    ++     K  ++K +R+++G+V Q P   LF  ++  ++  G ++  + +  +A
Sbjct: 62  KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKE-KA 120

Query: 488 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
            K A     + GL D +  +      +LSGGQ +R+AIA  +   P++L+LDE T+ LD 
Sbjct: 121 EKIAAEKLEMVGLADEFWEK---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177

Query: 548 ESELIVQRALEKI-MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602
           ++ + + +  E I  S +T ++V H +  V D  D + +L+ G ++  GT  D+  +
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234

Length = 288

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 26/234 (11%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450
            M F   + +V+ G+  A +GPSG+GKST+++++     P SG + L+G D  +      
Sbjct: 15  PMRF---DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS-- 69

Query: 451 REQMGLVSQEPALFA-TSIANNILLG-----KEDASMDRVIEA-AKAANAHSFVEGLPDG 503
           R  + ++ QE  LF+  ++A NI LG     K +A+    + A A+       +  LP  
Sbjct: 70  RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-- 127

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 563
                     QLSGGQ+QR+A+AR ++R   ILLLDE  SALD      +   + ++   
Sbjct: 128 ---------GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE 178

Query: 564 R--TTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
           R  T ++V+H L    R     +V+ +G++   G   +L+S     +AL+ ++S
Sbjct: 179 RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLGIKS 232

Length = 232

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 94.2 bits (235), Expect = 1e-19
 Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 41/241 (17%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I    +  AY  RP  + EN++ +++ G+    VG +G+GKST++ ++    EP SG++ 
Sbjct: 4   ITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALF--ATSIANNILLGKEDASMDRVIEAAKAANAH 494
                           ++G +SQEP L    T +   I    E   +   +E A A  A 
Sbjct: 62  RPKG-----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110

Query: 495 SFVEGLPDGYQTQVGEGG-----------------------TQLSGGQKQRIAIARAVLR 531
              E L +         G                       + LSGG ++R+A+ARA+L 
Sbjct: 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE 170

Query: 532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMV-LKNGQV 590
            P +LLLDE T+ LD ES   ++  L++     T IVV+H    + +V T ++ L  G++
Sbjct: 171 EPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSHDRYFLDNVATHILELDRGKL 228

Query: 591 V 591
            
Sbjct: 229 T 229

Length = 530

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 89.1 bits (222), Expect = 1e-19
 Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 17/220 (7%)

Query: 389 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK 448
               V   ++ SV  G+    +GP+G+GK+T   M+  L +P SGKILLDG D+  L + 
Sbjct: 11  GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70

Query: 449 WLREQMGL--VSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 505
             R ++G+  + QE ++F   ++  NIL   E   + +     K        E L + + 
Sbjct: 71  -KRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-------EELLEEFH 122

Query: 506 TQ--VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 563
                    + LSGG+++R+ IARA+  NPK LLLDE  + +D  +   +Q+ + KI+ +
Sbjct: 123 ITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK-IIKILKD 181

Query: 564 RTTIVVA--HRLS-TVRDVDTIMVLKNGQVVESGTHVDLI 600
           R   V+   H +  T+   D   ++  G+V+  GT  ++ 
Sbjct: 182 RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 94.0 bits (234), Expect = 1e-19
 Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 38/227 (16%)

Query: 390 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---Q 446
            ++V +N++F++  G+T   VG SGSGKST    + RL   + G+I  DG  L +L   Q
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQ 356

Query: 447 LKWLREQMGLVSQEP--AL-----FATSIANNILLGKEDASM----DRVIEAAKAANAHS 495
           L  +R ++ +V Q+P  +L         I   + + +   S      +VI   +      
Sbjct: 357 LLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV---- 412

Query: 496 FVEGL-PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
              GL P+       E     SGGQ+QRIAIARA++  P +++LDE TS+LD      VQ
Sbjct: 413 ---GLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKT----VQ 461

Query: 555 R---ALEKIMSNR---TTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
               AL K +  +     + ++H L  VR +   ++VL+ G+VVE G
Sbjct: 462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508

Length = 529

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 88.7 bits (220), Expect = 1e-19
 Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 39/234 (16%)

Query: 1008 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP---ISGT 1064
            L+NVS + P      +  N+N  ++ G  + ++G SG GKST++S ++         +G 
Sbjct: 5    LKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANA 1123
            + ++   +  L   + +R+IG++ Q+  LF   ++ +N+ +     + ++      AANA
Sbjct: 62   LWLNEQRLDMLP--AAQRQIGILFQDALLFPHLSVGQNLLFAL--PATLKGNARRNAANA 117

Query: 1124 -------HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
                    G   + P             LSGGQ+ RVA+ RA+L  P  LLLDE  S LD
Sbjct: 118  ALERSGLDGAFHQDPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166

Query: 1177 TA-SENLIQEALDKLME-GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQ 1228
             A  +   Q    ++   G  T+ V H        D   V    +V E+   EQ
Sbjct: 167  VALRDQFRQWVFSEVRAAGIPTVQVTH--------DLQDVPAGSRVIEMAQWEQ 212

Length = 213

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 93.7 bits (233), Expect = 1e-19
 Identities = 70/255 (27%), Positives = 127/255 (49%), Gaps = 19/255 (7%)

Query: 993  DPASKEVTEIKGNI-ELRNVSFKYPV--RPDITIFENLNLKVSAGRSLAVVGQSGSGKST 1049
            +   +   E+   I ++RNVS +Y    R  +   +N++L+V  G    +VG SG+GK+T
Sbjct: 266  EVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTT 325

Query: 1050 VISLVMRFYDPISGTV-------LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYEN 1101
            +  ++    +P SG V        +D            +R IG++ QE  L+   T+ +N
Sbjct: 326  LSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385

Query: 1102 I--KYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 1159
            +    G E   E+  MKA       GF     E       D   +LS G++ RVA+A+ +
Sbjct: 386  LTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPD---ELSEGERHRVALAQVL 442

Query: 1160 LKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQ 1216
            +K P I++LDE T  +D  ++  +  ++ K  E   +T I+V+H +  + +  D+ A+++
Sbjct: 443  IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR 502

Query: 1217 QGKVAEIGSHEQLLR 1231
             GK+ +IG  E+++ 
Sbjct: 503  DGKIVKIGDPEEIVE 517

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 13/172 (7%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           ++ S +   Y  +P    E++N ++++G+    +GPSG GK+T+++++        G I 
Sbjct: 2   LQISHLYADYGGKP--ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHS 495
           LDG  ++         + G+V Q   L    ++ +N+  G + A ++++     A     
Sbjct: 60  LDGKPVEGPG-----AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
            V GL    +  +     QLSGGQ+QR+ IARA+  NP++LLLDE   ALDA
Sbjct: 115 KV-GLEGAEKRYI----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161

Length = 255

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 93.1 bits (232), Expect = 2e-19
 Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 24/228 (10%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKS-TIISMVQRLYEPT----SGKILLDGHDLKSL-- 445
             + ++F ++AG+T A VG SGSGKS T +S++  L  P     SG IL DG DL +   
Sbjct: 25  AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84

Query: 446 -QLKWLR-EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDG 503
            QL+ +R  ++G++ QEP    TS+     +GK+ A + R+      A A +    L + 
Sbjct: 85  RQLRGVRGNKIGMIFQEPM---TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLE- 140

Query: 504 YQTQVGEGGT-------QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
               + E          +LSGGQ+QR+ IA A+   P +L+ DE T+ALD   +  +   
Sbjct: 141 -LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL 199

Query: 557 LEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
           L+++ +      + + H L  VR   D + V+++G++VE+GT   L +
Sbjct: 200 LKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247

Length = 534

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 89.2 bits (222), Expect = 2e-19
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 38/243 (15%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
               L+ ++       +    ++++ ++  G  + ++G +G+GKST++ L+   Y P SG 
Sbjct: 24   KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83

Query: 1065 VLIDGYDIRTLNLRSLRRKIGL-VQQEPALFSTTIYENIK-YGNEDASEIELMKATKAAN 1122
            V + G  +  L        I L    +P     T  ENI   G        ++  T+   
Sbjct: 84   VKVTG-KVAPL--------IELGAGFDP---ELTGRENIYLRG-------LILGLTRKEI 124

Query: 1123 AHGFISRMPEGYQ-SHVGDRGVQ----LSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
                  ++ E  + + +GD   Q     S G   R+A + A    P ILLLDE  +  D 
Sbjct: 125  DE----KVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD- 179

Query: 1178 ASENLIQEALDKLME----GRTTIMVAHRLSTIRNA-DKIAVLQQGKVAEIGSHEQLLRK 1232
                  ++ L++L E     +T ++V+H L  I+   D+   L+ G++   GS E+++  
Sbjct: 180  --AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237

Query: 1233 ENG 1235
               
Sbjct: 238  YEE 240

Length = 249

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 87.2 bits (217), Expect = 2e-19
 Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 45/226 (19%)

Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--YDPISGTVLIDGYDIRTL-- 1075
               I + +NL +  G   A++G +GSGKST+   +M    Y+   G +L  G DI  L  
Sbjct: 12   GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71

Query: 1076 NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY 1134
              R+ R  I L  Q P         + ++Y NE                 GF        
Sbjct: 72   EERA-RLGIFLAFQYPPEIPGVKNADFLRYVNE-----------------GF-------- 105

Query: 1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EG 1193
                       SGG+K+R  I + +L  P + +LDE  S LD  +  L+ E ++KL  EG
Sbjct: 106  -----------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEG 154

Query: 1194 RTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1237
            ++ +++ H  RL      D++ VL  G++ + G  E  L  E   Y
Sbjct: 155  KSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 89.0 bits (221), Expect = 2e-19
 Identities = 61/200 (30%), Positives = 104/200 (52%), Gaps = 18/200 (9%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +++ ++   Y  +P     E++NL + +G  L V+G SG GK+T+++L+  F     G++
Sbjct: 2    LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAH 1124
             +DG   + +      R  G+V Q   L     + +N+ +G + A    + K  +   AH
Sbjct: 59   TLDG---KPVEGPGAER--GVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAH 110

Query: 1125 GFISRMP-EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
              + ++  EG +        QLSGGQ+QRV IARA+  NP +LLLDE   ALD  +   +
Sbjct: 111  QMLKKVGLEGAEKR---YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167

Query: 1184 QEALDKLME--GRTTIMVAH 1201
            Q  L KL +  G+  +++ H
Sbjct: 168  QTLLLKLWQETGKQVLLITH 187

Length = 255

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 93.6 bits (233), Expect = 2e-19
 Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 16/209 (7%)

Query: 1034 GRSLAVVGQSGSGKSTVISLVMRFYDP----ISGTVLIDGYDIRTLNLRSLRRKIGLVQQ 1089
            G  LAV+G SG+GK+T+++ +  F  P     SG+VL++G     ++ + +R     VQQ
Sbjct: 51   GELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYVQQ 106

Query: 1090 EPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSH----VGDRGVQ 1144
            +     T T+ E++ +         + K  K       +  +     ++    V  R   
Sbjct: 107  DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKG 166

Query: 1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-MEGRTTIMVAHRL 1203
            LSGG+++R+A A  +L +P +L  DE TS LD+     + + L  L  +G+T I   H+ 
Sbjct: 167  LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226

Query: 1204 ST--IRNADKIAVLQQGKVAEIGSHEQLL 1230
            S+      DKI ++ +G+VA +GS +Q +
Sbjct: 227  SSELFELFDKIILMAEGRVAYLGSPDQAV 255

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 89.3 bits (221), Expect = 3e-19
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 12/230 (5%)

Query: 377 IEFSEVCFAYPS-RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           I    V ++YP   P +  EN+N  +  G+    +G +GSGKST+   +  L  P  GK+
Sbjct: 2   IRLENVSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59

Query: 436 LLDGHDLKSL-QLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAAN 492
           L+ G D     +L+ +R+ +G+V Q P       ++  ++  G E+  +   IE  K  +
Sbjct: 60  LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPP-IEIRKRVD 118

Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
             +  E   + Y+ +  +    LSGGQ Q +A+A  +   P+ L+ DE TS LD +S + 
Sbjct: 119 -RALAEIGLEKYRHRSPK---TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174

Query: 553 VQRALEKIMSNRTTIV-VAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 601
           V   ++K+     TIV + H L  + D D I+V+  G++V  G   +++S
Sbjct: 175 VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224

Length = 274

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 88.0 bits (219), Expect = 3e-19
 Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 55/249 (22%)

Query: 1006 IELRNVSFKYPV-------------------RPDITIFENLNLKVSAGRSLAVVGQSGSG 1046
            IEL NVS  YP                      +    ++++ +V  G  + ++G++G+G
Sbjct: 1    IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60

Query: 1047 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL-VQQEPALFSTTIYENIK-- 1103
            KST++ L+   Y P SGTV + G       + SL   +GL     P L   T  ENI   
Sbjct: 61   KSTLLRLLAGIYPPDSGTVTVRG------RVSSL---LGLGGGFNPEL---TGRENIYLN 108

Query: 1104 ---YGNEDASEIELMKATKAANAHGFI---SRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157
                G     EI+             I   S + +     V       S G K R+A A 
Sbjct: 109  GRLLGL-SRKEIDEKID--------EIIEFSELGDFIDLPVK----TYSSGMKARLAFAI 155

Query: 1158 AILKNPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVL 1215
            A    P ILL+DE  +  D A +   Q  L +L++ G+T I+V+H  S+I+   D+  VL
Sbjct: 156  ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215

Query: 1216 QQGKVAEIG 1224
            ++GK+   G
Sbjct: 216  EKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 88.3 bits (220), Expect = 3e-19
 Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 43/242 (17%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +E   +      R   + ++++ ++  G+  A +GP+G+GKST++  +     P SG++ 
Sbjct: 3   LEARNLSVRLGGRT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPAL-FATSIANNILLG--------KEDASMDRVIEA 487
           L+G  L       L  +  ++ Q  +L F  ++   + +G         ED   D ++ A
Sbjct: 61  LNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAED---DALVAA 117

Query: 488 AKAANAHSFVEGLPD-GYQTQVGEGGTQLSGGQKQRIAIARAVL-------RNPKILLLD 539
           A A      +  L    Y         QLSGG++QR+ +AR VL         P+ LLLD
Sbjct: 118 ALAQVD---LAHLAGRDYP--------QLSGGEQQRVQLAR-VLAQLWEPDGPPRWLLLD 165

Query: 540 EATSALDAESELIV-----QRALEKIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVES 593
           E TSALD   +  V     Q A E        IVV H L+   R  D I++L  G++V  
Sbjct: 166 EPTSALDLAHQHHVLRLARQLAHE---RGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222

Query: 594 GT 595
           GT
Sbjct: 223 GT 224

Length = 258

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 88.4 bits (220), Expect = 3e-19
 Identities = 65/236 (27%), Positives = 119/236 (50%), Gaps = 12/236 (5%)

Query: 1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
               +   N++  Y  R    +  +++L+V++G  + ++G +G+GK+T   +++    P S
Sbjct: 2    MSTLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58

Query: 1063 GTVLIDGYDIRTLNL-RSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKA 1120
            G +L+D  DI  L + +  R  IG + QE ++F   T+ +NI        EI      KA
Sbjct: 59   GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMA----VLEIREKDLKKA 114

Query: 1121 ANAHGFISRMPEGYQSHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
                   + + E + +H+ D     LSGG+++RV IARA+  NP  +LLDE  + +D  +
Sbjct: 115  ERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174

Query: 1180 ENLIQEALDKLMEGRTTIMVA-HRL-STIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
               IQ  +  L +    +++  H +  T+   D+  ++  GKV   GS E+++  E
Sbjct: 175  VIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230

Length = 243

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 90.3 bits (224), Expect = 3e-19
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 21/230 (9%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I+L  VS  Y  +    +   L+  V++G    ++G +G+GKST+  +++    P +G +
Sbjct: 42   IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENI----KYGNEDASEIELMKATKA 1120
             + G  +     R  R +IG+V Q   L    T+ EN+    +Y      EIE +  +  
Sbjct: 99   TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157

Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
              A           +S    R   LSGG K+R+ +ARA++ +P +L+LDE T+ LD  + 
Sbjct: 158  EFAR---------LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208

Query: 1181 NLIQEALDKLM-EGRTTIMVAHRLSTI-RNADKIAVLQQG-KVAEIGSHE 1227
            +LI E L  L+  G+T ++  H +    R  D++ VL+ G K+AE   H 
Sbjct: 209  HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA 258

Length = 340

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 11/209 (5%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
               L+  +  G     +G +G+GKST+++ +    +PTSG+IL+DG D+        R 
Sbjct: 21  ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS-VAKRA 79

Query: 453 QM-GLVSQEPAL---FATSIANNILLGKEDASMDRVIEAAKAANAHSFVE---GLPDGYQ 505
            +   V Q+P        +I  N+ L +       +  A       SF E    L  G +
Sbjct: 80  NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139

Query: 506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR- 564
            ++ +    LSGGQ+Q +++  A L  PKILLLDE T+ALD ++   V     KI+    
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199

Query: 565 -TTIVVAHRLSTVRDV-DTIMVLKNGQVV 591
            TT++V H +    D  + +++L +G++V
Sbjct: 200 LTTLMVTHNMEDALDYGNRLIMLHSGKIV 228

Length = 263

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 88.1 bits (218), Expect = 4e-19
 Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 26/222 (11%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PTS---GKILL--DGHDLK 443
           +   +N+N  V   +  A +GPSG GKST +    R+++  P +   G+I+L  D  ++ 
Sbjct: 29  YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88

Query: 444 SLQLK--WLREQMGLVSQEPALFATSIANNILLG------KEDASMDRVIEAAKAANAHS 495
           S ++    +R ++ +V Q+P  F  SI  N+  G      K  + ++  +E A    A  
Sbjct: 89  SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA-- 146

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
               L D  + ++G+    LSGGQ+QR+ IARA+  +P+ILL DE TSALD  +   ++ 
Sbjct: 147 ----LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202

Query: 556 ALEKIMSNRTTIVVAHRL---STVRDVDTIMVLKNGQVVESG 594
            +  + +  T ++V H +   + V D    M +  G+++E G
Sbjct: 203 LISDLKNKVTILIVTHNMQQAARVSDYTAYMYM--GELIEFG 242

Length = 265

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 92.1 bits (229), Expect = 4e-19
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 23/257 (8%)

Query: 1006 IELRNVSFKYPVRPDI--------TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 1057
            +++  +   +P+R  I         + +N++  +  G +L +VG+SGSGKST    ++R 
Sbjct: 276  LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335

Query: 1058 YDPISGTVLIDGYDIRTLNLRSL---RRKIGLVQQEP--ALFSTTIYENIKYGNEDASEI 1112
                 G +  DG  +  LN R L   R +I +V Q+P  +L        I    E+   +
Sbjct: 336  I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII---EEGLRV 391

Query: 1113 ELMKATKAANAHGFISRMPE-GYQSHVGDR-GVQLSGGQKQRVAIARAILKNPSILLLDE 1170
                 + A      I+ M E G       R   + SGGQ+QR+AIARA++  PS+++LDE
Sbjct: 392  HQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDE 451

Query: 1171 ATSALDTASENLIQEALDKLMEGR--TTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1227
             TS+LD   +  I   L  L +      + ++H L  +R    ++ VL+QG+V E G  E
Sbjct: 452  PTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511

Query: 1228 QLLRKENGIY-KQLIRL 1243
            ++       Y +QL+ L
Sbjct: 512  RVFAAPQQEYTRQLLAL 528

Length = 529

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 91.1 bits (226), Expect = 4e-19
 Identities = 64/239 (26%), Positives = 118/239 (49%), Gaps = 29/239 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I++ ++S +     D T+ + ++L V  G  + +VG +G+GK+T++  +     P +GTV
Sbjct: 4    IDVSDLSVE---FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIKYGN----------EDASEIEL 1114
            L+ G D+  L+ R+  R++  V Q+ +L F   + + ++ G            +     +
Sbjct: 61   LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120

Query: 1115 MKATKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATS 1173
             +A +      F             DR V  LSGG++QRV +ARA+ +   +LLLDE T+
Sbjct: 121  ERAMERTGVAQFA------------DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168

Query: 1174 ALDTASENLIQEALDKLME-GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLL 1230
            +LD   +    E + +L++ G+T +   H L    R  D++ +L  G+V   G    +L
Sbjct: 169  SLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227

Length = 402

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 88.7 bits (220), Expect = 5e-19
 Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 27/233 (11%)

Query: 377 IEFSEVCFAY-PSRPHMV--FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
           I+F  V + Y P  P      +N++F ++ G   A VG +GSGKST++     L +P+SG
Sbjct: 3   IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62

Query: 434 KILLDGHDLK----SLQLKWLREQMGLVSQ--EPALFATSIANNILLG------KEDASM 481
            I + G+ +     +  LK LR+++ LV Q  E  LF  ++  ++  G       ED + 
Sbjct: 63  TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122

Query: 482 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 541
           ++ ++  K         GL +     + +   +LSGGQ +R+AIA  +   P+IL LDE 
Sbjct: 123 EKALKWLKKV-------GLSE---DLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEP 172

Query: 542 TSALDAESEL-IVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE 592
            + LD E    ++Q   +   +  T I+V H +  V +  D ++VL++G++++
Sbjct: 173 AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225

Length = 287

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 88.6 bits (220), Expect = 6e-19
 Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 35/257 (13%)

Query: 376 QIEFSEVCFAYPSRPHMVF---ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
           QI+   +   +  +        +N++  ++ G+  A +G +GSGK+T I  +  L  P +
Sbjct: 2   QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61

Query: 433 GKI---LLDGHDLKSL---------------------QLKWLREQMGLVSQ--EPALFAT 466
           G I     D  + K                       ++K +R ++G+V Q  E  LF  
Sbjct: 62  GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121

Query: 467 SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA 526
           +I  +I+ G     + +  EA K A  +  + GL + Y   +     +LSGGQK+R+A+A
Sbjct: 122 TIEKDIIFGPVSMGVSKE-EAKKRAAKYIELVGLDESY---LQRSPFELSGGQKRRVALA 177

Query: 527 RAVLRNPKILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTV-RDVDTIMV 584
             +   P  L+ DE T+ LD +    +    + +    +T I+V H L  V       + 
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237

Query: 585 LKNGQVVESGTHVDLIS 601
            K+G++++ G   D++S
Sbjct: 238 FKDGKIIKDGDTYDILS 254

Length = 305

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 87.8 bits (218), Expect = 7e-19
 Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 14/221 (6%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QL 447
             V  N++ S+ +G+T A +G SG GKST+  ++  L  P+ G +   G  L  L   Q 
Sbjct: 25  QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR 84

Query: 448 KWLREQMGLVSQEPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE--GLPDG 503
           K  R  + +V Q+ ++ A +    +  ++ +    +  + +A + A A   +    L D 
Sbjct: 85  KAFRRDIQMVFQD-SISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS 143

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN 563
              +      QLSGGQ QR+ +ARA+   PK+L+LDEA S LD   +  V R L+K+   
Sbjct: 144 VLDKRPP---QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ 200

Query: 564 RTT--IVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLIS 601
             T  + + H L  V R    +MV+ NGQ+VE+    D ++
Sbjct: 201 FGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241

Length = 268

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 87.9 bits (218), Expect = 7e-19
 Identities = 64/238 (26%), Positives = 121/238 (50%), Gaps = 28/238 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +++R VSF    R +  IF+N++L V  G+  A++G SG GK+T++ L+     P  G +
Sbjct: 8    VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64

Query: 1066 LIDGYDIRTLNLRSL---RRKIGLVQQEPALFS-TTIYENIKYGNEDASEI--ELMKAT- 1118
            L DG +I  ++   L   R+++ ++ Q  ALF+   +++N+ Y   + +++   L+ +T 
Sbjct: 65   LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124

Query: 1119 ----KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174
                +A    G    MP            +LSGG  +R A+ARAI   P +++ DE    
Sbjct: 125  MMKLEAVGLRGAAKLMPS-----------ELSGGMARRAALARAIALEPDLIMFDEPFVG 173

Query: 1175 LDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
             D  +  ++ + + +L    G T ++V+H +  + + AD   ++   K+   GS + L
Sbjct: 174  QDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231

Length = 269

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 89.1 bits (221), Expect = 9e-19
 Identities = 83/303 (27%), Positives = 136/303 (44%), Gaps = 33/303 (10%)

Query: 355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSG 414
           E  H         I        I+ + V  +Y  +   V   L+F+V +G+ F  +GP+G
Sbjct: 20  ERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKA--VVNGLSFTVASGECFGLLGPNG 77

Query: 415 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPAL---FATSIANN 471
           +GKSTI  M+  +  P +GKI + G  + + + +  R ++G+V Q   L   F T   N 
Sbjct: 78  AGKSTIARMILGMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEF-TVRENL 135

Query: 472 ILLGKEDASMDRVIEAAKAANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 529
           ++ G+      R IEA       S +E   L      +V    + LSGG K+R+ +ARA+
Sbjct: 136 LVFGRYFGMSTREIEAVIP----SLLEFARLESKADARV----SDLSGGMKRRLTLARAL 187

Query: 530 LRNPKILLLDEATSALDAES-ELIVQRALEKIMSNRTTIVVAHRLSTV-RDVDTIMVLKN 587
           + +P++L+LDE T+ LD  +  LI +R    +   +T ++  H +    R  D + VL+ 
Sbjct: 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEA 247

Query: 588 GQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVE 647
           G+ +  G    LI               EH+       Y G     S    P +RR +V 
Sbjct: 248 GRKIAEGRPHALI--------------DEHIGCQVIEIYGGDPHELSSLVKPYARRIEVS 293

Query: 648 FES 650
            E+
Sbjct: 294 GET 296

Length = 340

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 27/216 (12%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
           ++N  +  G+   FVGPSG GKST++ M+  L + TSG + +    +  +        +G
Sbjct: 21  DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78

Query: 456 LVSQEPALFA-TSIANNI-----LLGKEDASMD-RVIEAAKAANAHSFVEGLPDGYQTQV 508
           +V Q  AL+   S+A N+     L G +   ++ RV + A+       ++  P       
Sbjct: 79  MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKA----- 133

Query: 509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE--KIMS--NR 564
                 LSGGQ+QR+AI R ++  P + LLDE  S LDA   L VQ  +E  ++     R
Sbjct: 134 ------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALRVQMRIEISRLHKRLGR 185

Query: 565 TTIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
           T I V H ++  +   D I+VL  G+V + G  ++L
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221

Length = 369

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 26/225 (11%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           + + ++  +  G+  A +GP+G+GKST++  +     P SG++ L+G  L S   + L  
Sbjct: 16  LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75

Query: 453 QMGLVSQEPAL-FATSIANNILLGK-------EDASMDRVIEAAKAANAHSFVEGLPDGY 504
              ++ Q  +L F  ++   + +G+       E    +R+   A AA   S + G    Y
Sbjct: 76  HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG--RDY 133

Query: 505 QTQVGEGGTQLSGGQKQRIAIAR------AVLRNPKILLLDEATSALDAESELIVQRALE 558
           +T        LSGG++QR+ +AR        + + + L LDE TSALD   +    R   
Sbjct: 134 RT--------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185

Query: 559 KIMSNR-TTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 601
           ++       + V H L+   +  D I++L  G+V+ SG+  D+++
Sbjct: 186 QLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230

Length = 259

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 87.2 bits (216), Expect = 1e-18
 Identities = 69/257 (26%), Positives = 133/257 (51%), Gaps = 32/257 (12%)

Query: 1006 IELRNVS--FKYPV----RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 1059
            +E+RN+S  F+Y      R  +   + ++  +  G++LA++G++GSGKST+  ++    +
Sbjct: 5    LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64

Query: 1060 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG---------NEDAS 1110
            P SG +LI+ + +   +     ++I ++ Q+P   +T++   ++ G         N D  
Sbjct: 65   PTSGEILINDHPLHFGDYSFRSKRIRMIFQDP---NTSLNPRLRIGQILDFPLRLNTDLE 121

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
              +  K  +       +  +P+    H       L+ GQKQRVA+ARA++  P I++ DE
Sbjct: 122  PEQRRK--QIFETLRMVGLLPD----HANYYPHMLAPGQKQRVALARALILRPKIIIADE 175

Query: 1171 ATSALDTASE----NLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225
            A ++LD +      NL+ E  +K   G + I V   +  I++ +D++ V+ +G+V E GS
Sbjct: 176  ALASLDMSMRSQLINLMLELQEKQ--GISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233

Query: 1226 -HEQLLRKENGIYKQLI 1241
              + L    + + K+LI
Sbjct: 234  TADVLASPLHELTKRLI 250

Length = 267

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 87.7 bits (217), Expect = 1e-18
 Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 21/225 (9%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I+L  VS  Y    D  +  +L+  ++ G    ++G +G+GKST+  +++    P  G +
Sbjct: 5    IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENI----KYGNEDASEIELMKATKA 1120
             + G  + +   R  R  IG+V Q   L    T+ EN+    +Y      EIE +  +  
Sbjct: 62   TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL 120

Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
              A           +S    R   LSGG K+R+ +ARA++ +P +L+LDE T+ LD  + 
Sbjct: 121  EFAR---------LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171

Query: 1181 NLIQEALDKLM-EGRTTIMVAHRLSTI-RNADKIAVLQQG-KVAE 1222
            +LI E L  L+  G+T ++  H +    R  D++ VL+ G K+AE
Sbjct: 172  HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 91.1 bits (226), Expect = 1e-18
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 26/256 (10%)

Query: 990  QPDDPASKEVTEIKGN--IELRNVSFKYPVRP--------DITIFENLNLKVSAGRSLAV 1039
               +P  ++ T + G   +++RN+  ++P+R         ++   E ++  +  G +L++
Sbjct: 296  AKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSL 355

Query: 1040 VGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST 1096
            VG+SGSGKST    ++R  +   G ++ +G  I TL+   L++LRR I  + Q+P   S 
Sbjct: 356  VGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYA-SL 414

Query: 1097 TIYENIKYGNEDASEIELMKATKAANAH--GFISRM---PEGYQSHVGDRGVQLSGGQKQ 1151
               + +     +   +  +   KAA A     + R+   PE    H      + SGGQ+Q
Sbjct: 415  DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPE----HAWRYPHEFSGGQRQ 470

Query: 1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RN 1208
            R+ IARA+  NP +++ DEA SALD +    I   L  L    G   + ++H ++ + R 
Sbjct: 471  RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERI 530

Query: 1209 ADKIAVLQQGKVAEIG 1224
            + ++AV+  G++ EIG
Sbjct: 531  SHRVAVMYLGQIVEIG 546

Length = 623

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 88.0 bits (218), Expect = 2e-18
 Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 28/209 (13%)

Query: 1039 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI----------------RTLNLRSLRR 1082
            ++G SGSGKST+++          GT+ +    I                +  N + LRR
Sbjct: 57   IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116

Query: 1083 KIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMKATKAANAHGFISRMPEGYQSHV 1138
            ++ +V Q P   LF  TI ++I +G       + E  K  K      ++++M     S++
Sbjct: 117  RVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKF-----YLNKMGLDD-SYL 170

Query: 1139 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN-LIQEALDKLMEGRTTI 1197
                  LSGGQK+RVAIA  +   P IL+ DE T+ LD   E+ ++Q  LD     +T  
Sbjct: 171  ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVF 230

Query: 1198 MVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225
            ++ H +  +   AD++ V+ +GK+ + G+
Sbjct: 231  VITHTMEHVLEVADEVIVMDKGKILKTGT 259

Length = 320

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 90.2 bits (224), Expect = 2e-18
 Identities = 63/276 (22%), Positives = 130/276 (47%), Gaps = 66/276 (23%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV--MRFYDPISG 1063
            IE++N++ K+       + +N++  +  G  L ++G+SG+GKS ++ ++  M  Y+P SG
Sbjct: 1    IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57

Query: 1064 TVL---------------------------------IDGYDIRTLNLRSLRRKIG-LVQQ 1089
             ++                                 +D +++     R +R++I  ++Q+
Sbjct: 58   RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117

Query: 1090 EPALF-STTIYEN-------IKYGNEDASE--IELMKATKAANAHGFISRMPEGYQSHVG 1139
              AL+   T+ +N       I Y  ++A    ++L++  + ++    I+R          
Sbjct: 118  TFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR---------- 167

Query: 1140 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTI 1197
                 LSGG+KQRV +AR + K P + L DE T  LD  +  L+  AL++ +   G + +
Sbjct: 168  ----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMV 223

Query: 1198 MVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
            + +H    I + +DK   L+ G++ E G+ ++++  
Sbjct: 224  LTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 90.4 bits (224), Expect = 2e-18
 Identities = 109/521 (20%), Positives = 194/521 (37%), Gaps = 53/521 (10%)

Query: 726  VALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLL 785
                F GL ++ +   +    F    G H+ A +R+++   IL   I   ++D      L
Sbjct: 55   SLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIE--EIDRRGAHNL 112

Query: 786  ISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFI--LSWRLAAVVAASLPLLIGAF 843
            I  L  D   + + L          +AL +  F IA++  LS  + A+  +++  +IG  
Sbjct: 113  IPLLTHDIDQINAFL---FIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAI--IIGTA 167

Query: 844  VAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQAL 903
                 F+ GF   +  A     +      A         I     + FA    Q +   +
Sbjct: 168  AQLLAFMGGFKFFH-AARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNI 226

Query: 904  LRGHIS---------GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLII 954
               HI           FG  +  LL  C+      +AS        +   I    + L+ 
Sbjct: 227  ADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFAS-------IDAAAISAFVLALLY 279

Query: 955  TALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIK-------GNIE 1007
                +   ++  P + +   A   +     R    +P+   S     +         +IE
Sbjct: 280  IKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339

Query: 1008 LRNVSFKYPVRPDITIFE--NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            L++V            F    ++L+++ G  + +VG++G GKST+  L    Y P  G +
Sbjct: 340  LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
            L+DG  +   +    R     +  +  LF   I  +              +     NA  
Sbjct: 400  LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG------------EHASLDNAQQ 447

Query: 1126 FISRMPEGYQSHVGDRG----VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
            ++ R+    +  + D G      LS GQ++R+A+  A L++  ILL DE  +  D A + 
Sbjct: 448  YLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKR 507

Query: 1182 LIQEAL--DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
               E L  D   +G+T I+++H       AD+I  L  G +
Sbjct: 508  FFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 35/275 (12%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--- 452
           +++F +  G+   F+G +G+GKST + M+  L  PTSGK+ ++G D    + ++LR    
Sbjct: 42  DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGL 101

Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVI----EAAKAANAHSFVE--GLPDGYQT 506
            MG   Q             L   +   + ++I    +   A       E   L    + 
Sbjct: 102 VMGQKLQ------LWWDLPAL---DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR-T 565
            V     +LS GQ+ R  +A A+L  PK+L LDE T  LD  ++  ++  L++    R  
Sbjct: 153 PV----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208

Query: 566 TIVVA-HRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSS 623
           T+++  H    +  + D ++++  GQ+V  GT   L  + G Y        S  L    S
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF-----SVELKQAKS 263

Query: 624 ICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQS 658
           +     S+ +   D       +++ + S+      
Sbjct: 264 L-----SQLALLGDVTIEEGLNIKNDVSREESADI 293

Length = 325

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 90.8 bits (226), Expect = 2e-18
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 22/200 (11%)

Query: 1006 IELRNVSFKYPVRPDITIF-ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I L N+S +    PD       LN +V  G  L + G+SG+GK++++  +   +   SG 
Sbjct: 393  ITLENLSLR---TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKY--GNEDASEIELMKATKAAN 1122
            +          +   L      + Q P L   T+ E + Y     D S+ EL+       
Sbjct: 450  I------SMPADSALL-----FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVG 498

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
                  R+ E            LSGG++QR+A AR +L  P  + LDEATSALD  +E+ 
Sbjct: 499  LGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR 553

Query: 1183 IQEALDKLMEGRTTIMVAHR 1202
            + + L + +   T I V HR
Sbjct: 554  LYQLLKEELPDATVISVGHR 573

Length = 604

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 85.6 bits (212), Expect = 3e-18
 Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 27/234 (11%)

Query: 381 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 440
            V F  P R   +   L+ +  AGK    +G +GSGKST++ M+ R   P+ G+ILLD  
Sbjct: 16  NVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73

Query: 441 DLKSLQLK-WLREQMGLVSQEPALFATSIANNILLGK----------EDASMDRVIEAAK 489
            L+S   K + R+   L  Q PA    ++   + +G+            A  ++V EA  
Sbjct: 74  PLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133

Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
                     L D            LSGG++QR  IA  V ++ + LLLDE TSALD   
Sbjct: 134 LVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182

Query: 550 ELIVQRALEKIMSNR--TTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLI 600
           ++ V   + ++   R  T I V H ++   R  D ++ L+ G+++  GT  +L+
Sbjct: 183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236

Length = 265

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 89.9 bits (223), Expect = 3e-18
 Identities = 72/253 (28%), Positives = 115/253 (45%), Gaps = 28/253 (11%)

Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069
            N++F    +  I    NL+  +  G +LA+VG+SGSGKS     +MR  +   G V  D 
Sbjct: 19   NIAFMQE-QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77

Query: 1070 YDIRTLN-------------LRSLR-RKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 1115
              +R  +             +R +R   + ++ QEP    T++      G + A  I L 
Sbjct: 78   MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM---TSLNPVFTVGEQIAESIRLH 134

Query: 1116 KATKAANAHGFISRM------PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 1169
            +      A     RM      PE  Q+ +     QLSGG +QRV IA A+   P++L+ D
Sbjct: 135  QGASREEAMVEAKRMLDQVRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193

Query: 1170 EATSALDTASENLIQEALDKLMEGRT--TIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1226
            E T+ALD   +  I + +  L +  +   I + H +  +   AD++ V+ QG+  E GS 
Sbjct: 194  EPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSV 253

Query: 1227 EQLLRKENGIYKQ 1239
            EQ+       Y +
Sbjct: 254  EQIFHAPQHPYTR 266

Length = 623

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 84.9 bits (210), Expect = 3e-18
 Identities = 61/217 (28%), Positives = 116/217 (53%), Gaps = 10/217 (4%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-L 1080
             + E+++L V++G  + ++G +G+GK+T   +V+      +G ++ID  DI  L L +  
Sbjct: 17   RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76

Query: 1081 RRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVG 1139
            RR IG + QE ++F   ++Y+N+    +   ++   +    AN       M E +  H+ 
Sbjct: 77   RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRAN-----ELMEEFHIEHLR 131

Query: 1140 DR-GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-GRTTI 1197
            D  G  LSGG+++RV IARA+  NP  +LLDE  + +D  S   I+  ++ L + G   +
Sbjct: 132  DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVL 191

Query: 1198 MVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
            +  H +  T+   ++  ++ QG +   G+  ++L+ E
Sbjct: 192  ITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228

Length = 241

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 85.6 bits (212), Expect = 3e-18
 Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 33/225 (14%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           + L+F++  G+T A +G +GSGKST+  M+  + EPTSG++L+D H L      +  +++
Sbjct: 30  KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRI 89

Query: 455 GLVSQEPALFATSI-----ANNIL-----LGKEDASMDRVIEAAKAANAHSFVEGL-PD- 502
            ++ Q+P   +TS+      + IL     L  +     R     K         GL PD 
Sbjct: 90  RMIFQDP---STSLNPRQRISQILDFPLRLNTDLEPEQR----EKQIIETLRQVGLLPDH 142

Query: 503 -GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA--ESELI--VQRAL 557
             Y   +      L+ GQKQR+ +ARA++  PK+++ DEA ++LD    S+LI  +    
Sbjct: 143 ASYYPHM------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQ 196

Query: 558 EKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
           EK     + I V   L  ++ + D ++V+  G+VVE G+  D+++
Sbjct: 197 EK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239

Length = 267

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 87.2 bits (217), Expect = 3e-18
 Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 41/210 (19%)

Query: 1038 AVVGQSGSGKSTVISLVMRFYDP------ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP 1091
            A+ G+SG+GK+++I+ +     P      ++G VL D    + + L   +R+IG V Q+ 
Sbjct: 28   AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAE--KGICLPPEKRRIGYVFQDA 85

Query: 1092 ALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ------ 1144
             LF    +  N++YG         M  +           M   +   V   G++      
Sbjct: 86   RLFPHYKVRGNLRYG---------MAKS-----------MVAQFDKIVALLGIEPLLDRY 125

Query: 1145 ---LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIM-V 1199
               LSGG+KQRVAI RA+L  P +LL+DE  ++LD   +  +   L++L  E    I+ V
Sbjct: 126  PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYV 185

Query: 1200 AHRLSTI-RNADKIAVLQQGKVAEIGSHEQ 1228
            +H L  I R AD++ VL+QGKV   G  E+
Sbjct: 186  SHSLDEILRLADRVVVLEQGKVKAFGPLEE 215

Length = 352

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 89.4 bits (222), Expect = 4e-18
 Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 14/246 (5%)

Query: 373 LAGQIEFSEVCFAYPS--RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
           +   +E  ++  +YPS      V + ++  + AG+  A VG SGSGKST+++++  L +P
Sbjct: 1   MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP 60

Query: 431 TSGKILLDGHDLKSL---QLKWLR-EQMGLVSQEPALFA-TSIANNILLGKEDASMDRVI 485
           TSG   + G D+ +L    L  LR E  G + Q   L +  + A N+ +    A ++R  
Sbjct: 61  TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER-- 118

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
              +   A   ++ L  G + +V    +QLSGGQ+QR++IARA++   +++L DE T AL
Sbjct: 119 -KQRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175

Query: 546 DAESELIVQRALEKIMSN-RTTIVVAHRLSTVRDVDTIMVLKNGQVV-ESGTHVDLISKG 603
           D+ S   V   L ++     T I+V H        + ++ +++G++V        +   G
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAG 235

Query: 604 GEYAAL 609
           G    +
Sbjct: 236 GTEPVV 241

Length = 648

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 21/196 (10%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           + +N ++  G+  + +G SG GKST+++++  L +PTSG ++L+G  +         ++M
Sbjct: 2   KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRM 57

Query: 455 GLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD--GYQTQVGEG 511
            +V Q  +L    ++  NI L     ++DRV+     +   + VE      G      + 
Sbjct: 58  -VVFQNYSLLPWLTVRENIAL-----AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111

Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVV 569
             QLSGG KQR+AIARA+   PK+LLLDE   ALDA +   +Q  L +I      T ++V
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171

Query: 570 AHRLSTVRDVDTIMVL 585
            H      DVD  ++L
Sbjct: 172 TH------DVDEALLL 181

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 84.6 bits (210), Expect = 4e-18
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%)

Query: 386 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL 445
           Y  R   V  +++  V++G+    +GP+G+GK+T   M+  L  P SGKILLD  D+  L
Sbjct: 14  YKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKL 71

Query: 446 QLKWLREQMGL--VSQEPALF-ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 502
            +   R ++G+  + QE ++F   ++ +NI+   E    D      KA         L +
Sbjct: 72  PM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDL----KKAERKEELDALLEE 126

Query: 503 GYQTQVGEG-GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
            + T + +     LSGG+++R+ IARA+  NPK +LLDE  + +D
Sbjct: 127 FHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171

Length = 243

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 85.5 bits (212), Expect = 4e-18
 Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 28/234 (11%)

Query: 1009 RNVSFKYP------VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
              +S  Y            T+  N++L + +G ++A++G+SG GKST+  L++    P  
Sbjct: 7    SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66

Query: 1063 GTVLIDGYDIRTLN---LRSLRRKIGLV-QQEPALFS--TTIYENIKYGNEDASE----- 1111
            G V   G  +  LN    ++ RR I +V Q   +  +   T+ E I        E     
Sbjct: 67   GNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII-------REPLRHL 119

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
            + L KA + A A   + R  +   S +  R  QLSGGQ QRV +ARA+   P +L+LDEA
Sbjct: 120  LSLDKAERLARASEML-RAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEA 178

Query: 1172 TSALDTASENLIQEALDKLMEGRTT--IMVAHRLSTI-RNADKIAVLQQGKVAE 1222
             S LD   +  +   L KL +   T  + + H L  + R   ++ V+  G++ E
Sbjct: 179  VSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232

Length = 268

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 84.9 bits (210), Expect = 4e-18
 Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 28/238 (11%)

Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL------ 1077
              +++  +  G  L +VG+SGSGKST++  +     P  GT          L L      
Sbjct: 19   CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78

Query: 1078 ---RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEI-ELMKATKA-------ANAHGF 1126
               R +R + G V Q P        + ++      + I E + A  A       A A  +
Sbjct: 79   ERRRLMRTEWGFVHQNPR-------DGLRMRVSAGANIGERLMAIGARHYGNIRATAQDW 131

Query: 1127 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1186
            +  + E   + + D     SGG +QR+ IAR ++  P ++ +DE T  LD + +  + + 
Sbjct: 132  LEEV-EIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 190

Query: 1187 LDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241
            L  L+   G   I+V H L   R  A ++ V+QQG+V E G  +Q+L      Y QL+
Sbjct: 191  LRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 84.2 bits (208), Expect = 4e-18
 Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 31/198 (15%)

Query: 1039 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LRRKIGLV-QQEPALF 1094
            + G SG+GKST++ L+     P +G +   G+DI  L  R    LRR+IG++ Q    L 
Sbjct: 33   LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92

Query: 1095 STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVG--DRG----VQLSGG 1148
              T+Y+N+         I L+ A  + +    I R        VG  D+     +QLSGG
Sbjct: 93   DRTVYDNVA--------IPLIIAGASGDD---IRRRVSAALDKVGLLDKAKNFPIQLSGG 141

Query: 1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-----GRTTIMVAHRL 1203
            ++QRV IARA++  P++LL DE T  LD A    + E + +L E     G T +M  H +
Sbjct: 142  EQQRVGIARAVVNKPAVLLADEPTGNLDDA----LSEGILRLFEEFNRVGVTVLMATHDI 197

Query: 1204 STI-RNADKIAVLQQGKV 1220
              I R + ++  L  G +
Sbjct: 198  GLISRRSYRMLTLSDGHL 215

Length = 222

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 86.4 bits (214), Expect = 4e-18
 Identities = 66/241 (27%), Positives = 124/241 (51%), Gaps = 28/241 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I+ RNV  +Y    D  + + L+  V  G    ++G +G+GK+T + +++    P +G++
Sbjct: 8    IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQ----EPALFSTTIYENI----KYGNEDASEIELMKA 1117
             + G  + +   R  R+++G+V Q    +P     T+ EN+    +Y    A+    +  
Sbjct: 65   SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVP 120

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
                 A     ++     + VG+    LSGG K+R+ +ARA++ +P +L+LDE T+ LD 
Sbjct: 121  PLLEFA-----KLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171

Query: 1178 ASENLIQEALDKLM-EGRTTIMVAHRLSTI-RNADKIAVLQQG-KVAEIGSHEQLLRKEN 1234
             + +L+ E L  L+  G+T ++  H +    R  D++ V+++G K+AE   H  L+  E 
Sbjct: 172  QARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA-LIESEI 230

Query: 1235 G 1235
            G
Sbjct: 231  G 231

Length = 306

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 84.2 bits (208), Expect = 5e-18
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 16/199 (8%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  V  AY        + + F +  G+     G SG+GKST++ ++  +  P++GKI 
Sbjct: 2   IRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60

Query: 437 LDGHD---LKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAAN 492
             GHD   LK+ ++ +LR Q+G++ Q+  L    ++ +N+       ++  +I  A   +
Sbjct: 61  FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNV-------AIPLIIAGASGDD 113

Query: 493 AHSFVEGLPD--GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
               V    D  G   +      QLSGG++QR+ IARAV+  P +LL DE T  LD    
Sbjct: 114 IRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173

Query: 551 LIVQRALEKIMSNRTTIVV 569
             + R  E+   NR  + V
Sbjct: 174 EGILRLFEEF--NRVGVTV 190

Length = 222

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 23/217 (10%)

Query: 1008 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067
            L  VS +Y  R   T+   L+L + AG+ +AVVG+SG GKST++ L+     P +G +L 
Sbjct: 15   LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71

Query: 1068 DGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGF 1126
                  T  L   R    L+ Q+  L     + +N+  G +       ++A  A      
Sbjct: 72   G-----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV----- 121

Query: 1127 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1186
                  G      +    LSGGQKQRVA+ARA++  P +LLLDE   ALD  +   +Q+ 
Sbjct: 122  ------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDL 175

Query: 1187 LDKLME--GRTTIMVAHRLS-TIRNADKIAVLQQGKV 1220
            ++ L +  G T ++V H +S  +  AD++ ++++GK+
Sbjct: 176  IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212

Length = 257

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 31/241 (12%)

Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP---ISGTVL 1066
             V+F  P   D+T   +LN  + AG +L +VG+SGSGKS     +M        I G+  
Sbjct: 19   RVTFSTP-DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77

Query: 1067 IDGYDIRTLNLRSLRR----KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 1122
             +G +I  L  + L +    +I ++ Q+P    T++   ++ G +    + L K    A 
Sbjct: 78   FNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAE 134

Query: 1123 AHGFISRM------PEGYQS-----HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
            A     RM      PE  +      H      + SGG +QRV IA A+L  P +L+ DE 
Sbjct: 135  AFEESVRMLDAVKMPEARKRMKMYPH------EFSGGMRQRVMIAMALLCRPKLLIADEP 188

Query: 1172 TSALDTASENLIQEALDKLMEGRTT--IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228
            T+ALD   +  I   L++L     T  IM+ H L  +    DK+ V+  G+  E G+   
Sbjct: 189  TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARD 248

Query: 1229 L 1229
            +
Sbjct: 249  V 249

Length = 330

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 85.8 bits (212), Expect = 6e-18
 Identities = 77/282 (27%), Positives = 129/282 (45%), Gaps = 35/282 (12%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I+   V  +Y  +  +V  +L+F++  G+ F  +GP+G+GKSTI  M+  +  P  GKI 
Sbjct: 5   IDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62

Query: 437 LDGHDLKSLQLKWLREQMGLVSQ----EPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
           + G  + S + +  R  +G+V Q    +P    T   N ++ G+      R IEA     
Sbjct: 63  VLGEPVPS-RARLARVAIGVVPQFDNLDPEF--TVRENLLVFGRYFGMSTREIEAV---- 115

Query: 493 AHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
             S +E   L      +V      LSGG K+R+ +ARA++ +P++L+LDE T+ LD  + 
Sbjct: 116 IPSLLEFARLESKADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171

Query: 551 -LIVQRALEKIMSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 608
            LI +R    +   +T ++  H +    R  D + VL++G+ +  G    LI        
Sbjct: 172 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI-------- 223

Query: 609 LVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFES 650
                  E +       Y G          P +RR +V  E+
Sbjct: 224 ------DEQIGCNVIEIYGGDPDELRELIRPYARRIEVSGET 259

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 83.4 bits (207), Expect = 6e-18
 Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 30/187 (16%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           +F  L+F++ AG+     GP+GSGK+T++ ++  L  P +G I LDG D   +    + E
Sbjct: 17  LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD---IDDPDVAE 73

Query: 453 QMGLVSQEPALFAT-SIANNI-----LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 506
               +    A+    ++A N+      LG E+      I AA  A   + +  LP GY  
Sbjct: 74  ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD----IAAALEAVGLAPLAHLPFGY-- 127

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS---N 563
                   LS GQK+R+A+AR ++ N  I +LDE T+ALDA +         +++     
Sbjct: 128 --------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA----VALFAELIRAHLA 175

Query: 564 RTTIVVA 570
           +  IV+A
Sbjct: 176 QGGIVIA 182

Length = 207

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 84.1 bits (208), Expect = 6e-18
 Identities = 62/206 (30%), Positives = 112/206 (54%), Gaps = 14/206 (6%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLK 448
           V  N++FS+  G+  A VG SGSGKST++ ++  L  PTSG ++ +G  +  L    + +
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 449 WLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS-FVEGLPD-GYQT 506
              +++G + Q   L     A       E+ +M  +I   K A  +S  +E L   G + 
Sbjct: 84  LRNQKLGFIYQFHHLLPDFTA------LENVAMPLLIGKKKPAEINSRALEMLAAVGLEH 137

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 566
           +     ++LSGG++QR+AIARA++ NP+++L DE T  LDA +   + + L ++   + T
Sbjct: 138 RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGT 197

Query: 567 --IVVAHRLSTVRDVDTIMVLKNGQV 590
             +VV H L   + +   + +++G++
Sbjct: 198 AFLVVTHDLQLAKRMSRQLEMRDGRL 223

Length = 233

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 85.0 bits (210), Expect = 6e-18
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 31/229 (13%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 1081
            T+ ENL +++  G   A++G +G GKST++  + R   P  G V +DG  I+    + + 
Sbjct: 21   TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80

Query: 1082 RKIGLVQQEPAL-FSTTIYENIKYG------------NEDASEIELMKATKAANAHGFIS 1128
            R+IGL+ Q        T+ E +  G             ED   +     TKA  A G   
Sbjct: 81   RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAV-----TKAMQATGI-- 133

Query: 1129 RMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1187
                   +H+ D+ V  LSGGQ+QR  IA  + +  +I+LLDE T+ LD + +  + E L
Sbjct: 134  -------THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186

Query: 1188 DKL--MEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
             +L   +G T   V H L+   R A  +  L++GK+   G+ ++++  E
Sbjct: 187  SELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235

Length = 265

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 83.3 bits (206), Expect = 8e-18
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 30/170 (17%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQL 447
             +  N+NF++  G+    +GPSG GKST++S +          +G++ L+   L  L  
Sbjct: 15  SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA 74

Query: 448 KWLREQMGLVSQEPALFAT-SIANNILLG---------KEDASMDRVIEAAKAANAHSFV 497
              + Q+G++ Q+  LF   S+  N+L           + +A+   +  +      H   
Sbjct: 75  A--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQD- 131

Query: 498 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
              P             LSGGQ+ R+A+ RA+L  PK LLLDE  S LD 
Sbjct: 132 ---PA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167

Length = 213

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 83.0 bits (206), Expect = 8e-18
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 27/184 (14%)

Query: 1017 VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 1076
            VR    +F  L+  ++AG +L + G +GSGK+T++ L+     P +GT+ +DG DI   +
Sbjct: 11   VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD 70

Query: 1077 LRSLRRKIG-LVQQEPALFSTTIYENIK-----YGNEDASEIELMKATKAANAHGFISRM 1130
            +      +G     +PAL   T+ EN++      G E+     +  A +A      ++ +
Sbjct: 71   VAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELD---IAAALEAVGLAP-LAHL 123

Query: 1131 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1190
            P GY          LS GQK+RVA+AR ++ N  I +LDE T+ALD A+  L  E    L
Sbjct: 124  PFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE----L 169

Query: 1191 MEGR 1194
            +   
Sbjct: 170  IRAH 173

Length = 207

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 32/219 (14%)

Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL- 450
            +   ++  V  G+    +G +G GK+T++  +  L    SG I LDG D+  L      
Sbjct: 14  HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73

Query: 451 REQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY---QT 506
           R  +  V Q   +F   ++  N+L G            A    +    + + + +   + 
Sbjct: 74  RAGIAYVPQGREIFPRLTVEENLLTGLA----------ALPRRSRKIPDEIYELFPVLKE 123

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI-------VQRALEK 559
            +G  G  LSGGQ+Q++AIARA++  PK+LLLDE T       E I       + R + +
Sbjct: 124 MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT-------EGIQPSIIKDIGRVIRR 176

Query: 560 IMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           + +      ++V   L   R++ D   V++ G+VV SG 
Sbjct: 177 LRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 67/260 (25%), Positives = 120/260 (46%), Gaps = 36/260 (13%)

Query: 1006 IELRNVSFKY-PVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            I+++N+   +    P ++   +N++++++ G  +A++GQ+GSGK+T I  +     P +G
Sbjct: 3    IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62

Query: 1064 TVLIDGYDIRTL------------------------NLRSLRRKIGLVQQ--EPALFSTT 1097
            T+     D +                           ++ +RR++G+V Q  E  LF  T
Sbjct: 63   TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122

Query: 1098 IYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG-VQLSGGQKQRVAIA 1156
            I ++I +G      +   +A K A  +  +  + E Y      R   +LSGGQK+RVA+A
Sbjct: 123  IEKDIIFGPVSMG-VSKEEAKKRAAKYIELVGLDESYL----QRSPFELSGGQKRRVALA 177

Query: 1157 RAILKNPSILLLDEATSALDTASENLIQEALDKL-MEGRTTIMVAHRL-STIRNADKIAV 1214
              +   P  L+ DE T+ LD      I E  D L  +G+T I+V H L + +    +   
Sbjct: 178  GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237

Query: 1215 LQQGKVAEIGSHEQLLRKEN 1234
             + GK+ + G    +L    
Sbjct: 238  FKDGKIIKDGDTYDILSDNK 257

Length = 305

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 88.0 bits (218), Expect = 1e-17
 Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 50/270 (18%)

Query: 357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSG 416
            HS E    D + +  L        + F    +      NL+FS+  G+T A VG SGSG
Sbjct: 2   PHSDELDARDVLAVENL-------NIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSG 54

Query: 417 KSTIISMVQRLYEPTSGKILLDGHDL--KSLQLKWLREQ------------MGLVSQEP- 461
           KS     + RL E   G +  D   L  +S Q+  L EQ            M ++ QEP 
Sbjct: 55  KSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM 114

Query: 462 ----ALFAT--SIANNILL----GKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVG 509
                +F     IA +I L     +E+A ++  R+++  +   A + +   P        
Sbjct: 115 TSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH------- 167

Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQ--RALEKIMSNRTT 566
               QLSGG +QR+ IA A+   P +L+ DE T+ALD   +  I+Q  + L+K MS    
Sbjct: 168 ----QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS-MGV 222

Query: 567 IVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           I + H +  V ++ D ++V+  G+ VE+G+
Sbjct: 223 IFITHDMGVVAEIADRVLVMYQGEAVETGS 252

Length = 623

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 20/202 (9%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           V   L+  + AG+  A VG SG GKST++ ++  L  P++G+ LL G    +  L   RE
Sbjct: 27  VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAG----TAPLAEARE 81

Query: 453 QMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
              L+ Q+  L     + +N+ LG +    D  ++A  A        GL D    +  E 
Sbjct: 82  DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-------GLAD----RANEW 130

Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVV 569
              LSGGQKQR+A+ARA++  P +LLLDE   ALDA + + +Q  +E +      T ++V
Sbjct: 131 PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV 190

Query: 570 AHRLS-TVRDVDTIMVLKNGQV 590
            H +S  V   D +++++ G++
Sbjct: 191 THDVSEAVAMADRVLLIEEGKI 212

Length = 257

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 89.3 bits (221), Expect = 1e-17
 Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 25/232 (10%)

Query: 1018 RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 1077
            R +IT +EN        +  A +G +G+GK+T +S++     P SGTVL+ G DI T NL
Sbjct: 948  RLNITFYEN--------QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NL 998

Query: 1078 RSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE--GY 1134
             ++R+ +G+  Q   LF   T+ E+I +  +       +K      A   +  M E  G 
Sbjct: 999  DAVRQSLGMCPQHNILFHHLTVAEHILFYAQ-------LKGRSWEEAQLEMEAMLEDTGL 1051

Query: 1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR 1194
                 +    LSGG ++++++A A + +  +++LDE TS +D  S   I + L K   GR
Sbjct: 1052 HHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGR 1111

Query: 1195 TTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE---NGIYKQLIR 1242
            T IM  H +       D+IA++ QG++   G+   L  K     G Y  L+R
Sbjct: 1112 TIIMSTHHMDEADLLGDRIAIISQGRLYCSGT--PLFLKNCFGTGFYLTLVR 1161

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 83.0 bits (205), Expect = 1e-17
 Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 12/207 (5%)

Query: 1029 LKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQ 1088
            L    G  L ++G +G+GK+T++  ++    P  GTV + G      +     R IG V 
Sbjct: 1    LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGKGWRHIGYVP 55

Query: 1089 QEPAL---FSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV-Q 1144
            Q       F  ++   +  G      I  ++    A+       +     + + DR V +
Sbjct: 56   QRHEFAWDFPISVAHTVMSGR--TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE 113

Query: 1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRL 1203
            LSGGQ+QRV +ARA+   PS+LLLDE  + LD  ++ L+ E   +L   G   +M  H L
Sbjct: 114  LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173

Query: 1204 STIRNADKIAVLQQGKVAEIGSHEQLL 1230
            +         VL  G+V   G+ +QL 
Sbjct: 174  AQAMATCDRVVLLNGRVIADGTPQQLQ 200

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 37/227 (16%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E +N+S ++  +   T   N++L V       ++G +G+GKST++ ++     P SG +
Sbjct: 1    LETKNLSKRFGKQ---TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKY-----GNEDASEIELMKATK 1119
            + DG+       R    KIG + + P L+   T  EN+K      G  D+   E++    
Sbjct: 58   IFDGHPWT----RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVD 113

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
              N      +              Q S G KQR+ IA A+L +P +L+LDE T+ LD   
Sbjct: 114  LTN----TGKKKAK----------QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159

Query: 1180 ENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220
               IQE L +L+     +G T I+ +H LS ++  AD I ++ +G +
Sbjct: 160  ---IQE-LRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 84.4 bits (208), Expect = 2e-17
 Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 26/222 (11%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN----LRSLR 1081
            +++L+V  G   A++G +GSGKST++  +     P  G V +    + + +    ++ +R
Sbjct: 24   DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR 83

Query: 1082 RKIGLVQQEP--ALFSTTIYENIKYG-------NEDASEIELMKATKAANAHGFISRMPE 1132
            +K+G+V Q P   LF  T+ +++ +G        E A +I   K      A  F  + P 
Sbjct: 84   KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP- 142

Query: 1133 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1192
                       +LSGGQ +RVAIA  +   P +L+LDE T+ LD  +   + +  + + +
Sbjct: 143  ----------FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192

Query: 1193 -GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
             G+T ++V H +  + + AD + +L++G +   G+   + ++
Sbjct: 193  SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234

Length = 288

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 87.1 bits (216), Expect = 2e-17
 Identities = 81/262 (30%), Positives = 122/262 (46%), Gaps = 46/262 (17%)

Query: 369 TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKS-TIISMVQRL 427
           T P LA  IE   V F        V  +++  ++AG+T A VG SGSGKS T +S+++ L
Sbjct: 2   TQPLLA--IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL 59

Query: 428 YEP----TSGKILLDGHDLKSLQLKWLR----EQMGLVSQEPALFATSIANNILLGK--- 476
             P     SG I   G  L     + LR     ++ ++ QEP +    +     L K   
Sbjct: 60  PSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHT---LEKQLY 116

Query: 477 EDASMDRVI--EAAKAA-----------NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI 523
           E  S+ R +  EAA+              A   +   P            QLSGG++QR+
Sbjct: 117 EVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPH-----------QLSGGERQRV 165

Query: 524 AIARAVLRNPKILLLDEATSALDAESE---LIVQRALEKIMSNRTTIVVAHRLSTVRDV- 579
            IA A+L  P++L+ DE T+ALD   +   L + R L++ + N   + + H LS VR + 
Sbjct: 166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLA 224

Query: 580 DTIMVLKNGQVVESGTHVDLIS 601
           D + V++NG+ VE      L S
Sbjct: 225 DRVAVMQNGRCVEQNRAATLFS 246

Length = 529

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 86.0 bits (213), Expect = 2e-17
 Identities = 57/221 (25%), Positives = 110/221 (49%), Gaps = 36/221 (16%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           V + ++ SV  G     VGP+G+GK+T++  +     PT+G +L+ G D+++L  +    
Sbjct: 18  VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77

Query: 453 QMGLVSQEPAL-FATSIANNILLGK-------------EDASMDRVIEAAKAANAHSFVE 498
           ++  V Q+ +L F   +   + +G+             + A+++R +E    A    F +
Sbjct: 78  RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA---QFAD 134

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL----IVQ 554
                         T LSGG++QR+ +ARA+ +   +LLLDE T++LD   ++    +V+
Sbjct: 135 -----------RPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183

Query: 555 RALEKIMSNRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESG 594
           R ++     +T +   H L    R  D +++L +G+V  +G
Sbjct: 184 RLVD---DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221

Length = 402

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 85.3 bits (212), Expect = 2e-17
 Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 39/225 (17%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           V + ++  V  G+    VGPSG GKST++ MV  L   TSG+I + G  +  L+    R+
Sbjct: 19  VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA-DRD 77

Query: 453 QMGLVSQEPALFA-TSIANNILLGKEDASMD------RVIEAAKAANAHSFVEGLPDGYQ 505
            + +V Q  AL+   S+  N+  G +   M       RV EAA+       ++  P    
Sbjct: 78  -IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP---- 132

Query: 506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE-KIMSNR 564
                   +LSGGQ+QR+A+ RA++R P + L DE  S LDA  +L VQ  LE + +  R
Sbjct: 133 -------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA--KLRVQMRLEIQRLHRR 183

Query: 565 ---TTIVVAHRLSTVRD-------VDTIMVLKNGQVVESGTHVDL 599
              T++ V H      D        D ++V+  G   + GT V++
Sbjct: 184 LKTTSLYVTH------DQVEAMTLADRVVVMNGGVAEQIGTPVEV 222

Length = 356

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 25/191 (13%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL-------LDGHDLKSL 445
           V +N++ +V+AG+  A  GPSG+GKST++  +   Y P SG+IL       +D       
Sbjct: 23  VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82

Query: 446 QLKWLREQ-MGLVSQ----EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFV--- 497
           ++  +R + +G VSQ     P + A  +    LL   +  + R    A+A    + +   
Sbjct: 83  EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLL---ERGVPREAARARARELLARLNIP 139

Query: 498 EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 557
           E L               SGG++QR+ IAR  + +  ILLLDE T++LDA +  +V   +
Sbjct: 140 ERLWHLPPAT-------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192

Query: 558 EKIMSNRTTIV 568
            +  +    ++
Sbjct: 193 AEAKARGAALI 203

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 35/223 (15%)

Query: 1028 NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRRKI 1084
             L++  G +L VVG+SG GKST    ++       G V   G D+  +     R++R  I
Sbjct: 41   TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100

Query: 1085 GLVQQEPALFSTT--------IYENIKYGNEDASEIELMKATKAANAH-----GFISRMP 1131
             ++ Q+P L S          I E ++  +   S  E+    KA           I+R P
Sbjct: 101  QMIFQDP-LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159

Query: 1132 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE----NLIQEAL 1187
                        + SGGQ QR+ IARA++  P +++ DE  SALD + +    NL+Q+ L
Sbjct: 160  H-----------EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ-L 207

Query: 1188 DKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
             + M G + I +AH L+ +++ +D++ V+  G   E+G+++++
Sbjct: 208  QREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249

Length = 331

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 83.5 bits (206), Expect = 3e-17
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 17/242 (7%)

Query: 373 LAGQIEFSEVCFAYPSRPHMVFENLN---FSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429
            +  I    V + Y  +    F+ LN    +    K    +G +GSGKST+I +   L  
Sbjct: 3   FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62

Query: 430 PTSGKILLDGHDL-----KSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASMD 482
             +G+ ++  + +     K  ++K LR+++GLV Q P   LF  +I  +I  G  +   +
Sbjct: 63  SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN 122

Query: 483 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542
           +     K       V+ LP+ Y   V     +LSGGQK+R+A+A  +  +   L+LDE T
Sbjct: 123 KQEAYKKVPELLKLVQ-LPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178

Query: 543 SALDAESELIVQRALEKIMSN--RTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDL 599
             LD + E       E++     +  I+V H +  V R  D ++V+  G+V+  G+  ++
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238

Query: 600 IS 601
            S
Sbjct: 239 FS 240

Length = 289

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 81.9 bits (203), Expect = 3e-17
 Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 25/213 (11%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKST---IISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           +++  V++G+  A +G SGSGK+T    IS        TSG+IL +G   K  Q +   +
Sbjct: 25  DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ---K 81

Query: 453 QMGLVSQEPALFAT-------SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 505
            +  V Q+  L          +    + L ++ +   R                L D   
Sbjct: 82  CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE--------DVLLRDLAL 133

Query: 506 TQVG-EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SN 563
           T++G      +SGG+++R++IA  +L +PK+L+LDE TS LD+ + L +   L ++   N
Sbjct: 134 TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRN 193

Query: 564 RTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 594
           R  I+  H  R    R  D I++L +G++V SG
Sbjct: 194 RIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 85.9 bits (213), Expect = 4e-17
 Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 28/230 (12%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY--DPI---SGTVLIDGYDIRTLN 1076
            T+  +++L++ AG +LA+VG+SGSGKS     ++R     P+   SG +   G  +   +
Sbjct: 23   TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82

Query: 1077 LRSLRR----KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE 1132
             ++LR     KI ++ QEP + S      ++   +    + L +  +   A G I    +
Sbjct: 83   EQTLRGVRGNKIAMIFQEP-MVSLNPLHTLE--KQLYEVLSLHRGMRREAARGEILNCLD 139

Query: 1133 GYQSHVGDRGV---------QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
                 VG R           QLSGG++QRV IA A+L  P +L+ DE T+ALD + +  I
Sbjct: 140  ----RVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQI 195

Query: 1184 QEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
             + L +L +      + + H LS +R  AD++AV+Q G+  E      L 
Sbjct: 196  LQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF 245

Length = 529

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 16/224 (7%)

Query: 385 AYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 444
           AY  R   V E+++ +V++G+    +GP+G+GK+T   MV  +    +G I++D  D+  
Sbjct: 12  AYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISL 69

Query: 445 LQL-KWLREQMGLVSQEPALFAT-SIANN---ILLGKEDASMDRVIEAAKAANAHSFVEG 499
           L L    R  +G + QE ++F   S+ +N   +L  ++D S ++  + A        +E 
Sbjct: 70  LPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH 129

Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
           L D         G  LSGG+++R+ IARA+  NPK +LLDE  + +D  S + ++R +E 
Sbjct: 130 LRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182

Query: 560 IM-SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
           +  S    ++  H +     V +   ++  G ++  GT  +++ 
Sbjct: 183 LRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226

Length = 241

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 81.8 bits (202), Expect = 4e-17
 Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 20/193 (10%)

Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS--- 1079
            +  N++  +  G  +A+VG SGSGKST++ L+     P SG V+ +G  +  L+  +   
Sbjct: 24   VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 1080 LR-RKIGLVQQEPALFST-TIYENIKY----GNEDASEIELMKATKAANAHGFISRMPEG 1133
            LR +K+G + Q   L    T  EN+      G +  +EI   +A +   A G   R    
Sbjct: 84   LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-SRALEMLAAVGLEHR---- 138

Query: 1134 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL--M 1191
                   R  +LSGG++QRVAIARA++ NP ++L DE T  LD  + + I + L +L  +
Sbjct: 139  ----ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194

Query: 1192 EGRTTIMVAHRLS 1204
            +G   ++V H L 
Sbjct: 195  QGTAFLVVTHDLQ 207

Length = 233

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 80.2 bits (198), Expect = 6e-17
 Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 13/160 (8%)

Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451
            +F  L+F++ AG+     GP+GSGK+T++ ++  L  P +G++LL+G  L   +    R
Sbjct: 14  ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIAR 73

Query: 452 EQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 510
             +  +   P +  T S+  N+     D S ++V EA      + F E  P         
Sbjct: 74  G-LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-EDRPVA------- 124

Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
              QLS GQ++R+A+AR +L    + +LDE T+ALD    
Sbjct: 125 ---QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 79.4 bits (197), Expect = 8e-17
 Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 51/221 (23%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066
            E+R +S K  VR       +++ +V AG  + + G  G+G++ +   +     P SG + 
Sbjct: 6    EVRGLSVKGAVR-------DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58

Query: 1067 IDGYDIRTLNLR-SLRRKIGLV----QQEPALFSTTIYENIKYGNEDASEIELMKATKAA 1121
            +DG  +   + R ++R  I  V    ++E  +   ++ ENI                   
Sbjct: 59   LDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI------------------- 99

Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
                 +S                LSGG +Q+V +AR + ++P +L+LDE T  +D  ++ 
Sbjct: 100  ----ALSS--------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141

Query: 1182 LIQEALDKL-MEGRTTIMVAHRLSTI-RNADKIAVLQQGKV 1220
             I   + +L   G+  ++++  L  +    D+I V+ +G++
Sbjct: 142  EIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 82.2 bits (203), Expect = 9e-17
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 35/246 (14%)

Query: 370 LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429
            P     I+F  V   Y     +V + L+F V  G+ F  +GP+G+GK+T + M+  L  
Sbjct: 1   GPMSVAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH 58

Query: 430 PTSGKILLDGHDLKSLQLKWLREQMGLVSQ----EPALFATSIANNILL---------GK 476
           P +G I L G  + S + +  R+++G+V Q    +P     ++  N+L+           
Sbjct: 59  PDAGSISLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAA 114

Query: 477 EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL 536
             A +  ++E AK          L +    +VGE    LSGG K+R+ +ARA++ +P +L
Sbjct: 115 ARALVPPLLEFAK----------LENKADAKVGE----LSGGMKRRLTLARALVNDPDVL 160

Query: 537 LLDEATSALDAES-ELIVQRALEKIMSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESG 594
           +LDE T+ LD ++  L+ +R    +   +T ++  H +    R  D + V++ G+ +  G
Sbjct: 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220

Query: 595 THVDLI 600
               LI
Sbjct: 221 APHALI 226

Length = 306

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 84.5 bits (209), Expect = 1e-16
 Identities = 57/221 (25%), Positives = 110/221 (49%), Gaps = 32/221 (14%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-------LLDGHDLKSLQL 447
           +N++  V  G+ F  VG SG+GK+T+  ++  + EPTSG++        +D         
Sbjct: 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGR 360

Query: 448 KWLREQMGLVSQEPALFA-TSIANNIL------LGKEDASMDRVIEAAKAA----NAHSF 496
              +  +G++ QE  L+   ++ +N+       L  E A M  VI           A   
Sbjct: 361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEI 420

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           ++  PD           +LS G++ R+A+A+ +++ P+I++LDE T  +D  +++ V  +
Sbjct: 421 LDKYPD-----------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHS 469

Query: 557 LEK--IMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
           + K      +T I+V+H +  V DV D   ++++G++V+ G
Sbjct: 470 ILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 83.5 bits (207), Expect = 2e-16
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 33/237 (13%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
            +EF  V   Y     ++ ++L+F +D G   A VGP+G+GKST++ ++     P SG +
Sbjct: 321 VLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 495
            + G  +K          +G   Q          +  +L   +   +   +  +     +
Sbjct: 380 KV-GETVK----------IGYFDQH---RDELDPDKTVL---EELSEGFPDGDEQ-EVRA 421

Query: 496 FVEGL---PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
           ++       +  +  VG     LSGG+K R+ +A+ +L+ P +LLLDE T+ LD ES   
Sbjct: 422 YLGRFGFTGEDQEKPVGV----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES--- 474

Query: 553 VQRALEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEY 606
              ALE+ + +   T ++V+H    +  V   I ++++      G + D + +  E 
Sbjct: 475 -LEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530

Length = 530

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 66/245 (26%), Positives = 123/245 (50%), Gaps = 31/245 (12%)

Query: 1006 IELRNVS--FKYPV----RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 1059
            +E+RN+S  F+Y      R  +   + L+  +  G++LA++G++GSGKST+  ++    +
Sbjct: 5    LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64

Query: 1060 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG---------NEDAS 1110
            P SG +LID + +   +     ++I ++ Q+P   ST++    +           N D  
Sbjct: 65   PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP---STSLNPRQRISQILDFPLRLNTDLE 121

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
              +  K          +      Y  H+      L+ GQKQR+ +ARA++  P +++ DE
Sbjct: 122  PEQREKQIIETLRQVGLLPDHASYYPHM------LAPGQKQRLGLARALILRPKVIIADE 175

Query: 1171 ATSALDTASE----NLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225
            A ++LD +      NL+ E  +K  +G + I V   L  +++ +D++ V+ QG+V E GS
Sbjct: 176  ALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233

Query: 1226 HEQLL 1230
               +L
Sbjct: 234  TADVL 238

Length = 267

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 36/221 (16%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKW 449
             +N++F V  G+ F  +GP+G+GK+T   M+  L EPT G+I  +G  L       + +
Sbjct: 17  AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76

Query: 450 LREQMGL-----VSQEPALFATSIANNILLG--KEDA--SMDRVIEAAKAANA-HSFVEG 499
           L E+ GL     V  +    A       L G  K +    +   +E  +        ++ 
Sbjct: 77  LPEERGLYPKMTVEDQLKYLAE------LKGMPKAEIQKKLQAWLERLEIVGKKTKKIK- 129

Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD-AESELIVQRALE 558
                         +LS G +Q+I    AV+  P++L+LDE  S LD    EL+     E
Sbjct: 130 --------------ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175

Query: 559 KIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVD 598
                 T I  +HR+  V ++ D +++LK GQ V  GT  D
Sbjct: 176 LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED 216

Length = 300

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 78.7 bits (194), Expect = 3e-16
 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 16/208 (7%)

Query: 399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVS 458
            S D G+    +GP+G+GK+T++  +  L  P  G + + G              +G V 
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55

Query: 459 QEPAL---FATSIANNILLGKED--ASMDRVIEAAKAANAHSFVE-GLPDGYQTQVGEGG 512
           Q       F  S+A+ ++ G+      + R   A  AA   +    GL +     VGE  
Sbjct: 56  QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE-- 113

Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIV-VAH 571
             LSGGQ+QR+ +ARA+   P +LLLDE  + LD  ++ ++     ++    T I+   H
Sbjct: 114 --LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171

Query: 572 RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
            L+        +VL NG+V+  GT   L
Sbjct: 172 DLAQAMATCDRVVLLNGRVIADGTPQQL 199

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 53/234 (22%), Positives = 117/234 (50%), Gaps = 18/234 (7%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+  V+  +    D    +N++ +V  G    ++G +G+GK+T   +++   +P  G +
Sbjct: 3    LEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAA-NA 1123
              +G  +     + ++ +IG + +E  L+   T+ + +KY     +E++ M   +     
Sbjct: 60   TWNGGPLS----QEIKNRIGYLPEERGLYPKMTVEDQLKY----LAELKGMPKAEIQKKL 111

Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
              ++ R+          +  +LS G +Q++    A++  P +L+LDE  S LD  +  L+
Sbjct: 112  QAWLERL--EIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL 169

Query: 1184 QEALDKLM-EGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKENG 1235
            ++A+ +L  EG T I  +HR+  +    D++ +L++G+    G+ E  +R+  G
Sbjct: 170  KDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED-IRRSFG 222

Length = 300

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 67/219 (30%), Positives = 107/219 (48%), Gaps = 23/219 (10%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTI--ISMVQRLYEPTSGKILLDGHDLKSLQL-KW 449
           + + +N +V  G+  A +GP+GSGKST+         YE TSG IL  G DL  L+  + 
Sbjct: 15  ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74

Query: 450 LREQMGLVSQEP--------ALFATSIANNIL--LGKEDASMDRVIEAAKAANAHSFVEG 499
            R  + L  Q P          F  S  N      G+E   +   ++  KA  A   + G
Sbjct: 75  ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLA---LLG 131

Query: 500 LPDGYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
           + + +  + V EG    SGG+K+R  I +  L  PK+ +LDE  S LD ++  IV   + 
Sbjct: 132 MDEEFLNRSVNEG---FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGIN 188

Query: 559 KIMS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 594
           ++   +R+ +++ H  RL      D + VL +G++V+SG
Sbjct: 189 RLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 83.8 bits (207), Expect = 3e-16
 Identities = 76/243 (31%), Positives = 110/243 (45%), Gaps = 51/243 (20%)

Query: 991  PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 1050
            PDD     +      I   + SF YP  P   +F+NLN  +     +A+VG +G GKST+
Sbjct: 500  PDDRPGPPI------ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTI 551

Query: 1051 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 1110
            + L+     P SGTV            RS + ++       A+FS    + +     D S
Sbjct: 552  LKLISGELQPSSGTVF-----------RSAKVRM-------AVFSQHHVDGL-----DLS 588

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ----------LSGGQKQRVAIARAIL 1160
               L+          F     +  ++H+G  GV           LSGGQK RVA A+   
Sbjct: 589  SNPLLYM-----MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 643

Query: 1161 KNPSILLLDEATSALD-TASENLIQEALDKLMEGRTTIMVAHRLSTIRNA-DKIAVLQQG 1218
            K P ILLLDE ++ LD  A E LIQ  +  L +G   +MV+H    I  + D++ V+ +G
Sbjct: 644  KKPHILLLDEPSNHLDLDAVEALIQGLV--LFQG-GVLMVSHDEHLISGSVDELWVVSEG 700

Query: 1219 KVA 1221
            KV 
Sbjct: 701  KVT 703

Length = 718

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 21/216 (9%)

Query: 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE----- 452
              +  G+T   VG SG GKST    +  L + T G++   G DL  ++    R      
Sbjct: 41  TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100

Query: 453 QM----GLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507
           QM     L S  P +     IA  +       S   V +  KA      V  LP+     
Sbjct: 101 QMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK--VGLLPN----L 154

Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV---QRALEKIMSNR 564
           +     + SGGQ QRI IARA++  PK+++ DE  SALD   +  V    + L++ M   
Sbjct: 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG-L 213

Query: 565 TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 599
           + I +AH L+ V+ + D ++V+  G  VE GT+ ++
Sbjct: 214 SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249

Length = 331

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 80.7 bits (200), Expect = 5e-16
 Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 33/235 (14%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
             ++L+ V   Y       + + ++L V+ G  + +VG SG GKST++ +V       SG 
Sbjct: 3    GLKLQAVRKSYD--GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG----NEDASEIE--LMKA 1117
            + I G  +  L      R I +V Q  AL+   ++ EN+ YG        +EIE  + +A
Sbjct: 61   IWIGGRVVNELEPAD--RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEA 118

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
             +       + R P            +LSGGQ+QRVA+ RAI++ P++ L DE  S LD 
Sbjct: 119  ARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167

Query: 1178 A------SENLIQEALDKLMEGRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGS 1225
                    E  IQ    +L    T++ V H ++  +  AD++ V+  G   +IG+
Sbjct: 168  KLRVQMRLE--IQRLHRRL--KTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218

Length = 356

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 82.3 bits (204), Expect = 5e-16
 Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 34/221 (15%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
           +++F   AG+  A +G +G+GKST++ ++   Y+P +G IL+DG   + ++       + 
Sbjct: 22  DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRFASTTAALA 78

Query: 456 ----LVSQE----PALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL-----PD 502
               ++ QE    P +   ++A N+ LG+       V        A   +E L     PD
Sbjct: 79  AGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD 135

Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELI--VQRALEK 559
              T +      LS GQ+Q + IA+A+ RN +++  DE TS+L A E E +  V R L  
Sbjct: 136 ---TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188

Query: 560 IMSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDL 599
               R  + V+HR+  +    D I V K+G+ V   T  D+
Sbjct: 189 --EGRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDM 225

Length = 501

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 82.0 bits (203), Expect = 6e-16
 Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 21/211 (9%)

Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451
            V + ++F++ AG+  A +G +G+GKST++ ++  +  P SG + + G+    L      
Sbjct: 25  EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKA 83

Query: 452 EQMG--LVSQEPALFAT-SIANNILLG--KEDASMDRVIEAAKAANAHSFVEGLPDGYQT 506
            Q+G  LV QEP LF   S+  NIL G  K  ASM ++ +   A      ++        
Sbjct: 84  HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-------- 135

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD-AESELIVQRALEKIMSNRT 565
                G+ L    +Q + I R ++R+ +IL+LDE T++L  AE+E +  R + ++++   
Sbjct: 136 --SSAGS-LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGV 191

Query: 566 TIV-VAHRLSTVRDV-DTIMVLKNGQVVESG 594
            IV ++H+L  +R + D I V+++G +  SG
Sbjct: 192 GIVFISHKLPEIRQLADRISVMRDGTIALSG 222

Length = 510

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 78.6 bits (194), Expect = 7e-16
 Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 34/241 (14%)

Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL--- 1080
              +++  +  G  L +VG+SGSGK+T++  +     P +GTV    Y +R    R L   
Sbjct: 22   CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV---TYRMRDGQPRDLYTM 78

Query: 1081 ----RRKI-----GLVQQEPALFSTTIYENIKYGNEDASEI-ELMKATKA-------ANA 1123
                RR++     G V Q P        + ++        I E + A  A       A A
Sbjct: 79   SEAERRRLLRTEWGFVHQNPR-------DGLRMQVSAGGNIGERLMAIGARHYGNIRAEA 131

Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
              ++  + E     + D     SGG +QR+ IAR ++  P ++ +DE T  LD + +  +
Sbjct: 132  QDWLEEV-EIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 190

Query: 1184 QEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240
             + L  L+   G   ++V H L+  R  AD++ V++QG+V E G  +++L   +  Y QL
Sbjct: 191  LDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQL 250

Query: 1241 I 1241
            +
Sbjct: 251  L 251

Length = 258

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 78.0 bits (193), Expect = 8e-16
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 46/226 (20%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE--- 452
           +L+  VD G+    +GP+G+GK+T++ ++     P  G +L  G DL  L      E   
Sbjct: 20  DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL-----PEHQI 74

Query: 453 -QMGLVS--QEPALF-ATSIANNILL-----------------GKEDASMDRVIEAAKAA 491
            + G+    Q+P +F   ++  N+ L                  +E   ++ V+E     
Sbjct: 75  ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE----- 129

Query: 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESE 550
                  GL D      G     LS GQKQ + I   ++++PK+LLLDE  + + D E+E
Sbjct: 130 -----TIGLADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETE 180

Query: 551 LIVQRALEKIMSNRTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGT 595
              +  L+ +    + +VV H +  VR +   + VL  G V+  G+
Sbjct: 181 KTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 77.0 bits (190), Expect = 8e-16
 Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451
           M+FE L+F+++AG+     GP+G GK+T++ ++  L  P SG++  +G  L   + +   
Sbjct: 14  MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP-H 72

Query: 452 EQMGLVSQEPALFAT-SIANNILLGKED-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
             +  +   P L    S   N+           R IE A AA       GL         
Sbjct: 73  RNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAA------VGLTGFEDLPAA 126

Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
               QLS GQ++R+A+AR  L    + +LDE T+ALD   
Sbjct: 127 ----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 81.5 bits (202), Expect = 8e-16
 Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 43/236 (18%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKST---VISLVMRFYDPIS 1062
            +E++N++  +     +   +N++LKV AG  +++ G++G+GKST   V+S V   +    
Sbjct: 6    LEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYE 61

Query: 1063 GTVLIDGYDIRTLNLRSLRRK-IGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKA 1120
            G ++ +G +++  N+R   R  I ++ QE AL    ++ ENI  GNE      +      
Sbjct: 62   GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNE------ITP---- 111

Query: 1121 ANAHGFI--SRMPEGYQS---------HVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 1169
                G +    M    Q          +       L  GQ+Q V IA+A+ K   +L+LD
Sbjct: 112  ---GGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILD 168

Query: 1170 EATSALDTASE-----NLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219
            E T++L T SE     ++I++       G   I ++H+L+ ++  +D I V++ G+
Sbjct: 169  EPTASL-TESETAVLLDIIRDLKAH---GIACIYISHKLNEVKAISDTICVIRDGR 220

Length = 506

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 81.4 bits (201), Expect = 9e-16
 Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 39/247 (15%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEPTSGKIL-------------- 436
           V +N++F+++ G+    +G SG+GKS ++ +++ +  YEPTSG+I+              
Sbjct: 15  VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74

Query: 437 --LDGHDLKSLQLKWLREQMGLVSQEPALF-------ATSIANNILLGKEDASMDRVIEA 487
               G            E++   +    L        A  +     L  +D  +D V+EA
Sbjct: 75  PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134

Query: 488 A-----KAANAHSFVEGLPDGYQTQVGEGGTQ----LSGGQKQRIAIARAVLRNPKILLL 538
                 +   A      L +    Q+    T     LSGG+KQR+ +AR + + P + L 
Sbjct: 135 LEEIGYEGKEAVGRAVDLIE--MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLA 192

Query: 539 DEATSALDAESELIVQRALEK--IMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           DE T  LD ++  +V  ALE+    S  + ++ +H    + D+ D  + L+NG++ E GT
Sbjct: 193 DEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGT 252

Query: 596 HVDLISK 602
             ++++ 
Sbjct: 253 PDEVVAV 259

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 81.1 bits (201), Expect = 1e-15
 Identities = 61/208 (29%), Positives = 108/208 (51%), Gaps = 24/208 (11%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQLKWLRE 452
           N++  V AG+  +  G +G+GKST++ ++  +Y P     G+I+ +G +L++  ++   E
Sbjct: 23  NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIR-DTE 80

Query: 453 QMGLV--SQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGL-----PDGY 504
           + G+    QE AL    S+  NI LG E      +   A    A   +  L     P   
Sbjct: 81  RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA-- 138

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564
            T VG     L  GQ+Q + IA+A+ +  ++L+LDE T++L  ESE  V   + + +   
Sbjct: 139 -TPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAH 192

Query: 565 --TTIVVAHRLSTVRDV-DTIMVLKNGQ 589
               I ++H+L+ V+ + DTI V+++G+
Sbjct: 193 GIACIYISHKLNEVKAISDTICVIRDGR 220

Length = 506

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 38/228 (16%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH-DLKSLQLKWLREQM 454
           +L+FSVD G+    +GP+G+GK+T++ ++     P  G++L DG  DL  L  +    + 
Sbjct: 23  DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP-EHRIARA 81

Query: 455 GLVS--QEPALF-ATSIANNI-----------------LLGKEDASMDRVIEAAKAANAH 494
           G+    Q+P +F   ++  N+                 L  +E   +D ++         
Sbjct: 82  GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLA-------- 133

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
               GL D            LS GQKQ + I   + ++PK+LLLDE  + +         
Sbjct: 134 --TIGLGDERDRLAAL----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187

Query: 555 RALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
             L+ +    + +VV H +  VR++ D + VL  G V+  G+ +D + 
Sbjct: 188 ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS-LDEVQ 234

Length = 249

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 80.3 bits (199), Expect = 2e-15
 Identities = 53/233 (22%), Positives = 102/233 (43%), Gaps = 33/233 (14%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085
            +++ +V AG  + + G +G+G+S ++  +     P SG +L++G D+        RR++G
Sbjct: 276  DVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLG 335

Query: 1086 LV------QQEPALFSTTIYENI-----------KYGNEDASEIELMKATKAANAHGFIS 1128
            L            +   ++ EN+           + G  D   I          A   I 
Sbjct: 336  LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR-------KFARELIE 388

Query: 1129 RM---PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
                      +        LSGG +Q++ +AR + + P +L+  + T  LD  +   I E
Sbjct: 389  EFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHE 444

Query: 1186 ALDKL-MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGI 1236
             L +L   G+  ++++  L  I   +D+IAV+ +G++  I   E+  R+E G+
Sbjct: 445  RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATREEIGL 497

Length = 501

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 17/209 (8%)

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG- 455
           L+  V AG+    VGP+G+GKST+++ +  L  P SG I   G  L++     L      
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73

Query: 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515
           L  Q+   FA  +   + L + D +    + +A    A +   GL D     V     QL
Sbjct: 74  LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEAL--GLDDKLGRSVN----QL 127

Query: 516 SGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKIMSNRTTIV 568
           SGG+ QR+ +A  VL+     NP  ++LLLDE  ++LD   +  + R L ++      +V
Sbjct: 128 SGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVV 187

Query: 569 VA-HRLS-TVRDVDTIMVLKNGQVVESGT 595
           ++ H L+ T+R  D + +LK G+++ SG 
Sbjct: 188 MSSHDLNHTLRHADRVWLLKQGKLLASGR 216

Length = 248

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 81.6 bits (201), Expect = 2e-15
 Identities = 68/243 (27%), Positives = 121/243 (49%), Gaps = 18/243 (7%)

Query: 395  ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
            + LN +    +  AF+G +G+GK+T +S++  L  PTSG +L+ G D+++  L  +R+ +
Sbjct: 947  DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005

Query: 455  GLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD--GYQTQVGEG 511
            G+  Q   LF   ++A +IL   +       ++      A   +E + +  G   +  E 
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQ-------LKGRSWEEAQLEMEAMLEDTGLHHKRNEE 1058

Query: 512  GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571
               LSGG ++++++A A + + K+++LDE TS +D  S   +   L K  S RT I+  H
Sbjct: 1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118

Query: 572  RLSTVRDV-DTIMVLKNGQVVESGTHVDLIS--KGGEYAALV----NLQSSEHLSNPSSI 624
             +     + D I ++  G++  SGT + L +    G Y  LV    N+QS       +  
Sbjct: 1119 HMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCS 1178

Query: 625  CYS 627
            C S
Sbjct: 1179 CTS 1181

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 33/197 (16%)

Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI----DGYDI---- 1072
            + + +N++L V+AG  +A+ G SG+GKST++  +   Y P SG +L+       D+    
Sbjct: 21   LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80

Query: 1073 --RTLNLRSLRRKIGLVQQ----EPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF 1126
                L +R  R+ IG V Q     P + +  +        E   E  + +    A A   
Sbjct: 81   PREVLEVR--RKTIGYVSQFLRVIPRVSALEVVA------EPLLERGVPREAARARAREL 132

Query: 1127 ISRMPEGYQSHVGDRGVQL-----SGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
            ++R+      ++ +R   L     SGG++QRV IAR  + +  ILLLDE T++LD A+  
Sbjct: 133  LARL------NIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186

Query: 1182 LIQEALDKLMEGRTTIM 1198
            ++ E + +       ++
Sbjct: 187  VVVELIAEAKARGAALI 203

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 56/235 (23%)

Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG-----HDLKSL--- 445
             +++F +  G+    VG SGSGK+T+++ +     P +G++          DL +L   
Sbjct: 22  CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81

Query: 446 QLKWL-REQMGLVSQEPA---LFATSIANNI---LLG---------KEDAS--MDRV-IE 486
           + + L R + G V Q P        S   NI   L+          +  A   ++RV I+
Sbjct: 82  ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141

Query: 487 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
           AA+       ++ LP           T  SGG +QR+ IAR ++ +P+++ +DE T  LD
Sbjct: 142 AAR-------IDDLP-----------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183

Query: 547 AESELIVQRALEKIMSNRTT------IVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
                 VQ  L  ++           ++V H L+  R +   ++V+K G+VVESG
Sbjct: 184 VS----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234

Length = 258

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 76.3 bits (188), Expect = 4e-15
 Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 34/243 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP----I 1061
            IELRN++    ++    +   ++L +  GR LA+VG SGSGKS   +  +          
Sbjct: 5    IELRNIA----LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60

Query: 1062 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE----------DASE 1111
            +G VL+DG  +    LR   RKI  + Q P      ++    +  E          DA+ 
Sbjct: 61   AGRVLLDGKPVAPCALRG--RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATL 118

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
               ++A    NA   +   P            ++SGG  QR+ IA A+L     ++ DE 
Sbjct: 119  TAALEAVGLENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEP 167

Query: 1172 TSALDTASENLIQEALDKLMEGRT--TIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQ 1228
            T+ LD  ++  I + L+ +++ R    ++V H +  + R AD +AV+  G++ E G  E 
Sbjct: 168  TTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227

Query: 1229 LLR 1231
            L  
Sbjct: 228  LFN 230

Length = 254

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 77.5 bits (191), Expect = 8e-15
 Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 31/232 (13%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-GTVLI---DGY-DIRTLNLRS 1079
             N +L +  G    ++G SGSGKST++  V    +P+S G+VL+   DG  D+   +  +
Sbjct: 41   HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGL-NPVSRGSVLVKDGDGSVDVANCDAAT 99

Query: 1080 LRR----KIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY 1134
            LRR    ++ +V Q+ AL    T+ EN+ +G E       M+    A     +    E  
Sbjct: 100  LRRLRTHRVSMVFQQFALLPWRTVEENVAFGLE-------MQGMPKAERRKRVDEQLE-- 150

Query: 1135 QSHVG-----DRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALD 1188
               VG     DR   +LSGG +QRV +ARA      ILL+DE  SALD      +Q+ L 
Sbjct: 151  --LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELL 208

Query: 1189 KLME--GRTTIMVAHRL-STIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1237
            +L     +T + V+H L   ++  ++IA+++ G++ + G+ E+++      Y
Sbjct: 209  ELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 78.7 bits (194), Expect = 8e-15
 Identities = 112/523 (21%), Positives = 201/523 (38%), Gaps = 78/523 (14%)

Query: 730  FVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTL 789
            F+GL ++ +   L+     T +G+H   ++R      IL   +   +     +  L++ L
Sbjct: 54   FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGL 111

Query: 790  AADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPL-LIGAFVAEQL 848
             +D   +  A + RL  +VQ + LT+ +      LS ++  +    + + + G FV    
Sbjct: 112  TSDVRNISFAFS-RLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMAR 170

Query: 849  FLKGFG----------GDYNRAYSRATSV------AREAIANIRTVAAYGIEKRISIQFA 892
              K              DY         +      A     N+    A      I     
Sbjct: 171  VYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANT 230

Query: 893  SELSQPN-KQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGS--NFGDIMKSF 949
              L   N    +L G I G  + ++  L   S  +      VL+  +    +   I+ + 
Sbjct: 231  FHLLAVNWSNIMLLGLI-GLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTL 289

Query: 950  MVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELR 1009
            +   +    +A+ L LAP                        D P  +   + K  +ELR
Sbjct: 290  LTAQVAFNKIAK-LELAPYK---------------------ADFPRPQAFPDWKT-LELR 326

Query: 1010 NVSFKYP-----VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            NV F Y      V P       +NL +  G  + ++G +GSGKST+  L+   Y P SG 
Sbjct: 327  NVRFAYQDNAFHVGP-------INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 1124
            +L+DG  +    L   R+    V  +  LF   +          AS              
Sbjct: 380  ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASP---------QLIE 425

Query: 1125 GFISRMPEGYQSHVGDRGV---QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
             ++ R+   +++ + D      +LS GQK+R+A+  A+L+   IL+LDE  +  D A   
Sbjct: 426  KWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRR 485

Query: 1182 LIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAE 1222
               + L  L++  G+T   ++H      +AD++  ++ G+++E
Sbjct: 486  EFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528

Length = 546

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 21/208 (10%)

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQMG 455
           L+  V AG+    VGP+G+GKST+++ +  +    SG I   G  L++     L R +  
Sbjct: 18  LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76

Query: 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515
           L  Q+   FA  + + + L + D          +  N  +    L D    ++G    QL
Sbjct: 77  LSQQQTPPFAMPVWHYLTLHQPDK------TRTELLNDVAGALALDD----KLGRSTNQL 126

Query: 516 SGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKI-MSNRTTI 567
           SGG+ QR+ +A  VL+     NP  ++LLLDE  ++LD   +  + R L  +       +
Sbjct: 127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIV 186

Query: 568 VVAHRLS-TVRDVDTIMVLKNGQVVESG 594
           + +H L+ T+R      +LK G+++ SG
Sbjct: 187 MSSHDLNHTLRHAHRAWLLKRGKLLASG 214

Length = 248

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 78.1 bits (193), Expect = 1e-14
 Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 33/270 (12%)

Query: 312 GGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI---IKENSHSSERPGDDGI 368
              AF  + +      +L     N  AIA  +A    +      ++     +E+P   G 
Sbjct: 328 AVGAFGQVHS------SLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGR 381

Query: 369 TLPKLA---GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ 425
            +         I    +    P     +   LNF V  G+     G SG+GK++++  + 
Sbjct: 382 RIDFDDNADHGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALA 440

Query: 426 RLYEPTSGKILL-DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL--LGKEDASMD 482
            L+   SG+I +     L              + Q P L   ++   +       D S  
Sbjct: 441 GLWPWGSGRISMPADSALL------------FLPQRPYLPQGTLREALCYPNAAPDFSDA 488

Query: 483 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542
            ++            E L +            LSGG++QR+A AR +L  PK + LDEAT
Sbjct: 489 ELVAVLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543

Query: 543 SALDAESELIVQRALEKIMSNRTTIVVAHR 572
           SALD E+E  + + L++ + + T I V HR
Sbjct: 544 SALDEETEDRLYQLLKEELPDATVISVGHR 573

Length = 604

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 26/220 (11%)

Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL------ 447
             +++F +  G+    VG SGSGKST++  +     P  G           L+L      
Sbjct: 19  CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78

Query: 448 ---KWLREQMGLVSQEPA---LFATSIANNI---LLGKEDASMDRVIEAAKAANAHSFVE 498
              + +R + G V Q P        S   NI   L+         +      A A  ++E
Sbjct: 79  ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RATAQDWLE 133

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE---LIVQR 555
            + +   T++ +     SGG +QR+ IAR ++  P+++ +DE T  LD   +   L + R
Sbjct: 134 EV-EIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 192

Query: 556 ALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
            L + +     I+V H L   R +   ++V++ G+VVESG
Sbjct: 193 GLVRDL-GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 28/237 (11%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +  S +   Y         +++F +  G+    VG SGSGK+T++  +     P +G + 
Sbjct: 7   LSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64

Query: 437 LDGHDLKSLQL---------KWLREQMGLVSQEPA---LFATSIANNI---LLGKEDASM 481
               D +   L         + LR + G V Q P        S   NI   L+       
Sbjct: 65  YRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY 124

Query: 482 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 541
             +   A+A +    VE   D    ++ +     SGG +QR+ IAR ++  P+++ +DE 
Sbjct: 125 GNI--RAEAQDWLEEVEIDLD----RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP 178

Query: 542 TSALDAESE---LIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESG 594
           T  LD   +   L + R L + +     ++V H L+  R + D +MV+K GQVVESG
Sbjct: 179 TGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234

Length = 258

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 75.0 bits (185), Expect = 1e-14
 Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 46/246 (18%)

Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL--- 1080
              +++  +  G  L +VG+SGSGK+T+++ +     P +G V     D +  +L +L   
Sbjct: 22   CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81

Query: 1081 -RRKI-----GLVQQEPA---LFSTTIYENI----------KYGNEDASEIELMKATKAA 1121
             RR++     G V Q P        +   NI           YG+        ++AT   
Sbjct: 82   ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGD--------IRAT--- 130

Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
             A  ++ R+ E   + + D     SGG +QR+ IAR ++ +P ++ +DE T  LD +   
Sbjct: 131  -AGDWLERV-EIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS--- 185

Query: 1182 LIQEALDKLMEGRTT------IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1234
             +Q  L  L+ G         ++V H L+  R  A ++ V++QG+V E G  +Q+L    
Sbjct: 186  -VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQ 244

Query: 1235 GIYKQL 1240
              Y QL
Sbjct: 245  HPYTQL 250

Length = 258

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 75.0 bits (184), Expect = 1e-14
 Identities = 71/254 (27%), Positives = 110/254 (43%), Gaps = 32/254 (12%)

Query: 380 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439
           S++ F Y   P +   NL+FS+        VG +G GKST+   +  L  P  G +L  G
Sbjct: 5   SDLWFRYQDEPVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62

Query: 440 H--DLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLG------KEDASMDRVIEAAK 489
              D     L  LR+Q+  V Q+P   +F T I ++I          E     RV EA  
Sbjct: 63  KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122

Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
             +A  F             +    LS GQK+R+AIA A++   + LLLDE T+ LD   
Sbjct: 123 LVDAQHFRH-----------QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171

Query: 550 ELIVQRALEKIMSN-RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYA 607
              +   + +I++     I+ +H +  + ++ D + VL+ GQ++  G         GE  
Sbjct: 172 RTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG-------APGEVF 224

Query: 608 ALVNLQSSEHLSNP 621
           A         L+ P
Sbjct: 225 ACTEAMEQAGLTQP 238

Length = 271

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 77.6 bits (191), Expect = 2e-14
 Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 41/227 (18%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QL 447
           H V E ++F +  G+T + VG SGSGKST    + RL E   G+I+ +G  + +L   +L
Sbjct: 338 HAV-EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKL 396

Query: 448 KWLREQMGLVSQEPALFAT-----SIANNIL-------LGKEDASMDRVIEAAKAANAHS 495
           + LR  +  + Q+P  +A+     ++ ++I+       L    A+  RV    +      
Sbjct: 397 QALRRDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLER----- 449

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE----- 550
            V  LP+       E     SGGQ+QRI IARA+  NPK+++ DEA SALD         
Sbjct: 450 -VGLLPEHAWRYPHE----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504

Query: 551 --LIVQRALEKIMSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESG 594
             L +QR           + ++H ++ V R    + V+  GQ+VE G
Sbjct: 505 LLLDLQRDF-----GIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546

Length = 623

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 37/218 (16%)

Query: 396 NLNFSVDA-----GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK-W 449
           +L  +V+      G T A  G SG+GK+++I+ +  L  P  G+I+L+G  L   +    
Sbjct: 12  DLCLTVNLTLPAQGIT-AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIC 70

Query: 450 L---REQMGLVSQEPALFA-TSIANNILLG---KEDASMDRVIEAAKAANAHSFVEGLPD 502
           L   + ++G V Q+  LF    +  N+  G      A  D+++           +E L D
Sbjct: 71  LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLG-------IEPLLD 123

Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA--ESELI--VQRALE 558
            Y          LSGG+KQR+AI RA+L  P++LL+DE  ++LD   + EL+  ++R   
Sbjct: 124 RYPGS-------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176

Query: 559 KIMSNRTTIV-VAHRLSTV-RDVDTIMVLKNGQVVESG 594
           +I      I+ V+H L  + R  D ++VL+ G+V   G
Sbjct: 177 EI---NIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211

Length = 352

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 77.6 bits (191), Expect = 2e-14
 Identities = 62/183 (33%), Positives = 94/183 (51%), Gaps = 28/183 (15%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I FS+  F YP  P ++F+NLNF +D     A VGP+G GKSTI+ ++    +P+SG + 
Sbjct: 509 ISFSDASFGYPGGP-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV- 566

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR----VIEAAKAAN 492
                 +S +++     M + SQ   +    +++N LL      M R    V E    A+
Sbjct: 567 -----FRSAKVR-----MAVFSQH-HVDGLDLSSNPLL-----YMMRCFPGVPEQKLRAH 610

Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-EL 551
             SF  G+      Q       LSGGQK R+A A+   + P ILLLDE ++ LD ++ E 
Sbjct: 611 LGSF--GVTGNLALQ---PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665

Query: 552 IVQ 554
           ++Q
Sbjct: 666 LIQ 668

Length = 718

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 24/193 (12%)

Query: 1017 VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 1076
             R +  +FE L+  ++AG +L V G +G GK+T++ ++     P SG V  +G  +    
Sbjct: 9    SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68

Query: 1077 LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
                 R I  +   P L    +  EN+ +                   HG   R  E   
Sbjct: 69   -DEPHRNILYLGHLPGLKPELSALENLHFWAAI---------------HGGAQRTIEDAL 112

Query: 1136 SHVGDRGV------QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1189
            + VG  G       QLS GQ++R+A+AR  L    + +LDE T+ALD A   L+   L  
Sbjct: 113  AAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172

Query: 1190 -LMEGRTTIMVAH 1201
             L  G   ++  H
Sbjct: 173  HLARGGIVLLTTH 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHR 1202
            LSGG++QR+A AR +L  P  + LDEATSALD  SE+ + + L +   G T I V HR
Sbjct: 92   LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE--LGITVISVGHR 147

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 74.3 bits (182), Expect = 3e-14
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 31/228 (13%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450
           + V ENL   +  G   A +GP+G GKST++  + RL  P  G + LDG  ++    K +
Sbjct: 20  YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79

Query: 451 REQMGLVSQEPALFATSIANNILLG--------------KEDASMDRVIEAAKAANAHSF 496
             ++GL++Q  A     I    L+               KED   + V +A +A      
Sbjct: 80  ARRIGLLAQN-ATTPGDITVQELVARGRYPHQPLFTRWRKEDE--EAVTKAMQAT----- 131

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
                 G      +    LSGGQ+QR  IA  + +   I+LLDE T+ LD   ++ +   
Sbjct: 132 ------GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185

Query: 557 LEKIMSNR--TTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 601
           L ++   +  T   V H L+   R    ++ L+ G++V  G   ++++
Sbjct: 186 LSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233

Length = 265

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 16/187 (8%)

Query: 1018 RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 1077
            R    +F  L+  ++AG +L V G +GSGK+T++ ++     P++G VL++G  +     
Sbjct: 10   RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR- 68

Query: 1078 RSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS 1136
             S+ R +  +   P + +T ++ EN+++ + D S+ ++ +A      +GF          
Sbjct: 69   DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF---------- 118

Query: 1137 HVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL-DKLMEGR 1194
               DR V QLS GQ++RVA+AR +L    + +LDE T+ALD A      EA+      G 
Sbjct: 119  --EDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG 176

Query: 1195 TTIMVAH 1201
              ++  H
Sbjct: 177  MVVLTTH 183

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 72.1 bits (178), Expect = 3e-14
 Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 44/207 (21%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKW 449
                +++F V AG+     G  G+G++ +   +  L  P SG+I LDG  +        
Sbjct: 13  KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72

Query: 450 LREQMGLVSQEP---ALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ 505
           +R  +  V ++     L    S+A NI L                               
Sbjct: 73  IRAGIAYVPEDRKREGLVLDLSVAENIALS------------------------------ 102

Query: 506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-ELIVQRALEKIMSNR 564
                  + LSGG +Q++ +AR + R+P++L+LDE T  +D  +   I +   E   + +
Sbjct: 103 -------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK 155

Query: 565 TTIVVAHRLSTVRDV-DTIMVLKNGQV 590
             ++++  L  +  + D I+V+  G++
Sbjct: 156 AVLLISSELDELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 75.6 bits (186), Expect = 3e-14
 Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 31/220 (14%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL---DGH-DLKSL---QL 447
            N +  ++ G+    +G SGSGKST++  V  L   + G +L+   DG  D+ +     L
Sbjct: 41  HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100

Query: 448 KWLR-EQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVE--GLPDG 503
           + LR  ++ +V Q+ AL    ++  N+  G E   M  + +A +       +E  GL   
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLE---MQGMPKAERRKRVDEQLELVGLAQW 157

Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ESELI-VQRA 556
              + GE    LSGG +QR+ +ARA      ILL+DE  SALD       + EL+ +Q  
Sbjct: 158 ADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSK 213

Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGT 595
           L      +T + V+H L     +   I +++ G++++ GT
Sbjct: 214 L-----KKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 77.2 bits (190), Expect = 3e-14
 Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 17/209 (8%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVI-SLVMRFY-DPISGTVLIDGYDIRTLNLRS 1079
            TI   +    S G  LAV+G SGSGKST++ +L  R   +  +GT+L +    R    + 
Sbjct: 82   TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN---RKPTKQI 138

Query: 1080 LRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRM--PEGYQS 1136
            L+R  G V Q+  L+   T+ E + + +       L K  K   A   IS +   +   +
Sbjct: 139  LKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENT 197

Query: 1137 HVGD---RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD-TASENLIQEALDKLME 1192
             +G+   RG+  SGG+++RV+IA  +L NPS+L+LDE TS LD TA+  L+        +
Sbjct: 198  IIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255

Query: 1193 GRTTIMVAHRLST--IRNADKIAVLQQGK 1219
            G+T +   H+ S+   +  D + VL +G+
Sbjct: 256  GKTIVTSMHQPSSRVYQMFDSVLVLSEGR 284

Length = 659

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 29/178 (16%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL----DGHDLKSLQ-- 446
           V  N++ SV+AG+     GPSGSGKST++  +   Y P  G+IL+    +  DL + +  
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85

Query: 447 --LKWLREQMGLVSQ----EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 500
             L+  R  +G VSQ     P + A  +    LL +    + R +  AKAA+  +     
Sbjct: 86  EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLT----- 137

Query: 501 PDGYQTQVGEGGTQL-----SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
               +  + E    L     SGG++QR+ IAR  + +  ILLLDE T++LDA +  +V
Sbjct: 138 ----RLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191

Length = 235

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 76.4 bits (188), Expect = 3e-14
 Identities = 66/285 (23%), Positives = 135/285 (47%), Gaps = 36/285 (12%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ- 453
           +++N +V  G+  A +G +G+GKST++ ++  ++EPT G I ++  +   L  K   +  
Sbjct: 22  KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81

Query: 454 MGLVSQEPALF-ATSIANNILLG----KEDASMDRV--IEAAKAANAHSFVEGLPDGYQT 506
           +G++ QE ++    ++  N+ +G    K+   ++ +   E    A       GL      
Sbjct: 82  IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE 141

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESE--LIVQRALEKIMSN 563
           +V      LS   KQ + IA+ ++ + K++++DE TS+L + E +   ++   L K    
Sbjct: 142 KVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK--EG 195

Query: 564 RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPS 622
              + ++H+L+ +R + D   V+K+G  V SG   D+ +       +V L     L N  
Sbjct: 196 TAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDD-----IVRLMVGRELQN-- 248

Query: 623 SICYSGSSRYSSFRDFPSSRRYDVEFES---SKRRELQSSDQSFA 664
                   R+++ ++  S+  ++  FE    + R   +  D SF+
Sbjct: 249 --------RFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFS 285

Length = 510

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 71.4 bits (176), Expect = 4e-14
 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIV-VAHR 572
           LSGG++QR+A AR +L  PK + LDEATSALD ESE    R  + +     T++ V HR
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE---DRLYQLLKELGITVISVGHR 147

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 48/206 (23%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
             + ++F    G+   F+GP+G+GKST + ++     P SG + + G D+     + ++ 
Sbjct: 17  ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQR 75

Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE--GLPDGYQTQVGE 510
            +G + +   L+        L  +  A +  +            +E  GL      ++G 
Sbjct: 76  NIGYLPEHNPLYLDMYVREYL--QFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIG- 132

Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA 570
              QLS G +QR+ +A+A++ +PK+L+LDE T+ LD    + ++  ++ I  ++T I+  
Sbjct: 133 ---QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILST 189

Query: 571 HRLSTVRDV-DTIMVLKNGQVVESGT 595
           H +  V  + D ++++  G++V    
Sbjct: 190 HIMQEVEAICDRVIIINKGKIVADKK 215

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 33/241 (13%)

Query: 382 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKS----TIISMVQRLYEPTSGKILL 437
           V F   S P    + +++SV  G+    VG SGSGKS     I+ ++       + K+  
Sbjct: 11  VHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEF 70

Query: 438 DGHDLKSLQLKWLREQMG----LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANA 493
           +G DL+ +  K  R  +G    ++ Q+P    TS+     +G +      ++EA K    
Sbjct: 71  NGQDLQRISEKERRNLVGAEVAMIFQDPM---TSLNPCYTVGFQ------IMEAIKVHQG 121

Query: 494 HSFVE------------GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 541
            +               G+PD   +++     QLSGG  QR+ IA A+   PK+L+ DE 
Sbjct: 122 GNKKTRRQRAIDLLNQVGIPDP-ASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180

Query: 542 TSALDAESEL-IVQRALE-KIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVD 598
           T+ALD   +  I++  LE +   N   +++ H L+ V +    I+V+  GQVVE+G   D
Sbjct: 181 TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240

Query: 599 L 599
           +
Sbjct: 241 I 241

Length = 326

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 76.2 bits (188), Expect = 5e-14
 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 23/218 (10%)

Query: 404 GKTFAFVGPSGSGKSTIISMVQRLYEP---TSGKILLDGHDLKSLQLKWLREQMGLVSQE 460
           G+  A +G SG+GK+T+++ +          SG +LL+G     +  K +R     V Q+
Sbjct: 51  GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM---PIDAKEMRAISAYVQQD 107

Query: 461 PALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEGGTQ 514
                T      L+ +    M R +   +       V+      GL     T++G  G  
Sbjct: 108 DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRER---VDEVLQALGLRKCANTRIGVPGRV 164

Query: 515 --LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAH 571
             LSGG+++R+A A  +L +P +L  DE TS LD+     V + L+ +    +T I   H
Sbjct: 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224

Query: 572 RLST--VRDVDTIMVLKNGQVVESGT---HVDLISKGG 604
           + S+      D I+++  G+V   G+    V   S  G
Sbjct: 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLG 262

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 28/169 (16%)

Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH------DLKSL 445
            +F +L+F+++AG+     GP+G+GK+T++ ++  L  P +G++   G       +    
Sbjct: 16  TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75

Query: 446 QLKWLREQMGLVSQ----EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLP 501
            L +L  Q G+ ++    E   F               +   + EA           GL 
Sbjct: 76  ALLYLGHQPGIKTELTALENLHFWQRFHG-------SGNAATIWEALAQV-------GLA 121

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
                 VG    QLS GQ++R+A+AR  L    + +LDE  +ALD E  
Sbjct: 122 GLEDLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166

Length = 209

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 31/233 (13%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           V  +++  +  GK    +GP+G+GKST++ +V  L  P  G I  +G      +L+    
Sbjct: 19  VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG------KLR---- 68

Query: 453 QMGLVSQEPALFAT---SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
            +G V Q+  L  T   ++   + L       D ++ A K   A   ++        Q  
Sbjct: 69  -IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED-ILPALKRVQAGHLID-----APMQ-- 119

Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTI 567
               +LSGG+ QR+ +ARA+L  P++L+LDE T  +D   ++ +   ++++    +   +
Sbjct: 120 ----KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVL 175

Query: 568 VVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLS 619
           +V+H L  V    D ++ L N  +  SGT  +++S   E+ ++   + +E L 
Sbjct: 176 MVSHDLHLVMAKTDEVLCL-NHHICCSGTP-EVVSLHPEFISMFGPRGAEQLG 226

Length = 251

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 72.7 bits (179), Expect = 7e-14
 Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 31/223 (13%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
           N+N  V   +  + +GP+G+GK+T+ + +   Y+PT G ILL G  ++ L       +MG
Sbjct: 23  NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP-GHQIARMG 81

Query: 456 LVS--QEPALFA--TSIAN-----------NILLGKEDASMDRVIEAAKAANAHSFVE-- 498
           +V   Q   LF   T I N            +  G       R  E+     A +++E  
Sbjct: 82  VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-----SELIV 553
           GL +    Q G     L+ GQ++R+ IAR ++  P+IL+LDE  + L+ +      ELI 
Sbjct: 142 GLLEHANRQAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197

Query: 554 QRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           +   E    N T +++ H +  V  + D I V+  G  + +GT
Sbjct: 198 ELRNE---HNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237

Length = 255

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 54/233 (23%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKS-TIISMVQRLYEP--TSGKILLDGHDLKSL---QLKW 449
           +LNFS+ AG+T   VG SGSGKS T  +++  L       G    +G ++ +L   +L  
Sbjct: 34  DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNK 93

Query: 450 LR-EQMGLVSQEPALFATS------IANNIL--------LGKEDASMD--RVIEAAKAAN 492
           LR EQ+ ++ Q+P    TS      +   ++        + K +A  +  R+++A K   
Sbjct: 94  LRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE 150

Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
           A   ++  P            + SGG +QR+ IA A+L  PK+L+ DE T+ALD    + 
Sbjct: 151 ARKRMKMYPH-----------EFSGGMRQRVMIAMALLCRPKLLIADEPTTALD----VT 195

Query: 553 VQRALEKIMS---------NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           VQ    +IM+         N   I++ H L  V  + D ++V+  G+ +E G 
Sbjct: 196 VQ---AQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245

Length = 330

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 37/206 (17%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + L NVS  +  R    +  +++L++  G+ L ++G +G+GKST++ +V+    P  G +
Sbjct: 5    VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST---TI--YENIKYGNEDASEIELMKATKA 1120
                        R+ + +IG V Q+  L +T   T+  +  ++ G +    +  +K  +A
Sbjct: 62   K-----------RNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110

Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
                            H+ D  +Q LSGG+ QRV +ARA+L  P +L+LDE T  +D   
Sbjct: 111  G---------------HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNG 155

Query: 1180 ENLIQEALDKLME--GRTTIMVAHRL 1203
            +  + + +D+L        +MV+H L
Sbjct: 156  QVALYDLIDQLRRELDCAVLMVSHDL 181

Length = 251

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 24/215 (11%)

Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---- 1076
            ++I   + L V  G ++A++G+SGSGKST+++++    D  SG V + G  +  ++    
Sbjct: 23   LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82

Query: 1077 --LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEG 1133
              LR+  + +G V Q   L  T    EN++          L++   +  +      + E 
Sbjct: 83   AKLRA--KHVGFVFQSFMLIPTLNALENVELP-------ALLRGESSRQSRNGAKALLE- 132

Query: 1134 YQSHVGDR----GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1189
             Q  +G R      QLSGG++QRVA+ARA    P +L  DE T  LD  + + I + L  
Sbjct: 133  -QLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191

Query: 1190 LME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAE 1222
            L    G T I+V H L      D+   L  G++ E
Sbjct: 192  LNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226

Length = 228

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 18/235 (7%)

Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            G     N  F    R    + ++++ ++  G  +  +G +G+GKST + ++     P SG
Sbjct: 21   GLKGSLNHFFHRKERSIEAV-QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             V ++G D          R IGLV              + +       +E++K       
Sbjct: 80   KVRVNGKDPF-RRREEYLRSIGLV--------MGQKLQLWWDLPALDSLEVLKLIYEIPD 130

Query: 1124 HGFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
              F  R+         +  +     +LS GQ+ R  +A A+L  P +L LDE T  LD  
Sbjct: 131  DEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN 190

Query: 1179 SENLIQEALDKLMEGR-TTIMVA-HRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1230
            ++  I+E L +  E R  T+++  H    I    D++ ++ QG++   G+  QL 
Sbjct: 191  AQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245

Length = 325

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 74.5 bits (183), Expect = 2e-13
 Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 23/227 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY--DPISG 1063
            +E++ +   +     +   + ++L+V  G  + + G++G+GKST++ ++   Y      G
Sbjct: 2    LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDG 58

Query: 1064 TVLIDGYDIRTLNLRSLRRK-IGLVQQEPALF-STTIYENIKYGNEDASEIELMK-ATKA 1120
             +   G  ++  N+R   R  I ++ QE  L    ++ ENI  GNE       M      
Sbjct: 59   EIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY 118

Query: 1121 ANAHGF-----ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
              A        +          VGD G    GGQ+Q V IA+A+ K   +L+LDE +S+L
Sbjct: 119  LRAKNLLRELQLDADNV--TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSL 172

Query: 1176 DTASEN--LIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219
             T  E   L+    D    G   + ++H+L+ ++   D I V++ G+
Sbjct: 173  -TEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 74.2 bits (183), Expect = 2e-13
 Identities = 63/236 (26%), Positives = 93/236 (39%), Gaps = 68/236 (28%)

Query: 1008 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG-TVL 1066
            +  VS   P  P   I ++++L    G  + V+G +G+GKST++ ++       +G    
Sbjct: 7    MNRVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP 64

Query: 1067 IDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENI-------------------KYGN 1106
              G             K+G + QEP L  T T+ EN+                   K+  
Sbjct: 65   APGI------------KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAE 112

Query: 1107 EDASEIELMK-------ATKAANAHGFIS---------RMPEGYQSHVGDRGVQ-LSGGQ 1149
             DA    L+           AA+A              R P        D  V  LSGG+
Sbjct: 113  PDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW------DADVTKLSGGE 166

Query: 1150 KQRVAIARAILKNPSILLLDEATSALDTAS----ENLIQEALDKLMEGRTTIMVAH 1201
            ++RVA+ R +L  P +LLLDE T+ LD  S    E  +QE       G T + V H
Sbjct: 167  RRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-----YPG-TVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 71.6 bits (175), Expect = 2e-13
 Identities = 61/240 (25%), Positives = 119/240 (49%), Gaps = 24/240 (10%)

Query: 1027 LNLKVSAGRSLAVVGQSGSGKSTVI----------SLVMRFYDPISGTVLIDGYDIRTLN 1076
            ++L +  G  +A++G SGSGKST++                 + +  TV  +G   R  +
Sbjct: 23   VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR--D 80

Query: 1077 LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASE-----IELMKATKAANAHGFISRM 1130
            +R  R   G + Q+  L +  ++ EN+  G   ++             +   A   ++R+
Sbjct: 81   IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV 140

Query: 1131 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1190
               + +H   R   LSGGQ+QRVAIARA+++   ++L DE  ++LD  S  ++ + L  +
Sbjct: 141  GMVHFAH--QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198

Query: 1191 --MEGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE-NGIYKQLIRLQQD 1246
               +G T ++  H++   +R  ++I  L+QG V   GS +Q   +  + +Y+ + R++++
Sbjct: 199  NQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINRVEEN 258

Length = 262

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 74.1 bits (182), Expect = 2e-13
 Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 36/213 (16%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--------YDPISGTVLIDGYDIR 1073
             +  NLNL++  G  +AVVGQSG+GK+T++ +++          Y P SG V +    + 
Sbjct: 397  YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456

Query: 1074 TLNLRSLRRKIGLVQQEPALFSTTIYENI--KYGNEDASEIELMKATKAANAHGFISRMP 1131
             L              EP     TI E++  K G+ +A+  E++     ++A  +  +  
Sbjct: 457  ALIPGEY---------EPEFGEVTILEHLRSKTGDLNAAV-EILNRAGLSDAVLYRRKFS 506

Query: 1132 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL- 1190
            E            LS GQK+R  +A+ + + P++LL+DE  + LD  +   +   + +L 
Sbjct: 507  E------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554

Query: 1191 MEGRTTIMVAHRLSTIRNA---DKIAVLQQGKV 1220
             E   T++V      + NA   D + ++  GKV
Sbjct: 555  REAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587

Length = 593

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 69.8 bits (172), Expect = 2e-13
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 28/169 (16%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----- 445
            ++F  L+F+++AG+     GP+G+GK++++ ++  L  P +G++L  G  ++       
Sbjct: 14  RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH 73

Query: 446 -QLKWLREQMG----LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 500
             L +L  Q G    L + E   F   +             + + EA        F E +
Sbjct: 74  QDLLYLGHQPGIKTELTALENLRFYQRLHG-------PGDDEALWEALAQVGLAGF-EDV 125

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
           P            QLS GQ++R+A+AR  L    + +LDE  +A+D + 
Sbjct: 126 PVR----------QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG 164

Length = 204

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 27/188 (14%)

Query: 1018 RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 1077
            R + T+F +L+  ++AG +L + G +G+GK+T++ ++     P +G V   G  I+ +  
Sbjct: 12   RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR- 70

Query: 1078 RSLRRKIGLVQQEPALFST-TIYENIKYGNE---DASEIELMKATKAANAHGFISRMPEG 1133
             S  + +  +  +P + +  T  EN+ +        +   + +A       G    +P G
Sbjct: 71   ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LPVG 129

Query: 1134 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG 1193
                      QLS GQ++RVA+AR  L    + +LDE  +ALD     L+          
Sbjct: 130  ----------QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL---------- 169

Query: 1194 RTTIMVAH 1201
             T +M AH
Sbjct: 170  -TALMAAH 176

Length = 209

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 70.4 bits (172), Expect = 5e-13
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 25/225 (11%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY---EPTSGKILLDGHDLK---- 443
           H     ++ ++  G+  A +GPSGSGKST++  +  L    +     I L G  ++    
Sbjct: 17  HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76

Query: 444 -SLQLKWLREQMGLVSQEPALF-ATSIANNILLG--------KEDASMDRVIEAAKAANA 493
            +  ++  R   G + Q+  L    S+  N+L+G        +   S     +  +A  A
Sbjct: 77  LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA 136

Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
            + V G+      +V    + LSGGQ+QR+AIARA+++  K++L DE  ++LD ES  IV
Sbjct: 137 LTRV-GMVHFAHQRV----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191

Query: 554 QRALEKIMSNR--TTIVVAHRLS-TVRDVDTIMVLKNGQVVESGT 595
              L  I  N   T +V  H++   +R  + I+ L+ G V   G+
Sbjct: 192 MDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236

Length = 262

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 72.5 bits (178), Expect = 7e-13
 Identities = 92/407 (22%), Positives = 166/407 (40%), Gaps = 42/407 (10%)

Query: 200 LLTLAVVPLIAVAGGAYTIT-----MSTLSEKGEAAYGEAGKVA----EEIISQVRAVYA 250
            L   V  ++ + GG   +      M+   E  +    +   +     E  +++ RA Y 
Sbjct: 150 FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209

Query: 251 FVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDT 310
                     Y    +E      ++     + V  +  +L     L+ W A + +    T
Sbjct: 210 HNNL------YIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA-LSLGWAST 262

Query: 311 NGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITL 370
           N   A T ++ ++F    L  A   L  +   + A  N I+ ++   + ++ P       
Sbjct: 263 N--VAATIVLVLLFLRTPLLSAVGILPTLLTAQVAF-NKIAKLELAPYKADFPRPQAF-- 317

Query: 371 PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
           P     +E   V FAY      V   +N ++  G+    +G +GSGKST+  ++  LY+P
Sbjct: 318 PDWKT-LELRNVRFAYQDNAFHV-GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375

Query: 431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKA 490
            SG+ILLDG  + + QL+  R+    V  +  LF        LLG E          A  
Sbjct: 376 QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQ------LLGPE--------GKASP 421

Query: 491 ANAHSFVEGLPDGYQTQVGEGG---TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
                +++ L   ++T + +G     +LS GQK+R+A+  A+L    IL+LDE  +  D 
Sbjct: 422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDP 481

Query: 548 ESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 592
                  + L  ++    +T   ++H        D ++ ++NGQ+ E
Sbjct: 482 AFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528

Length = 546

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 70.9 bits (174), Expect = 7e-13
 Identities = 72/245 (29%), Positives = 109/245 (44%), Gaps = 40/245 (16%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISL-VMRFYDPISGTVL-----IDGYDIRTLNLR 1078
            + ++  V  G  + +VG+SGSGKS V SL +M   D   G V+      +G D++ ++ +
Sbjct: 24   DRISYSVKQGEVVGIVGESGSGKS-VSSLAIMGLID-YPGRVMAEKLEFNGQDLQRISEK 81

Query: 1079 SLRRKIG----LVQQEPAL-------FSTTIYENIKY---GNEDASE---IELMKATKAA 1121
              R  +G    ++ Q+P             I E IK    GN+       I+L+      
Sbjct: 82   ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIP 141

Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
            +    +   P            QLSGG  QRV IA AI   P +L+ DE T+ALD   + 
Sbjct: 142  DPASRLDVYPH-----------QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQA 190

Query: 1182 LIQEALDKLM--EGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1238
             I E L +L   E    +++ H L+ +   A KI V+  G+V E G    + R     Y 
Sbjct: 191  QIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYT 250

Query: 1239 Q-LIR 1242
            Q L+R
Sbjct: 251  QALLR 255

Length = 326

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 54/209 (25%), Positives = 104/209 (49%), Gaps = 21/209 (10%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
            ++F+++ G+   F+GP+G+GK+T + ++  L +PTSG++ + G      + K+LR ++G
Sbjct: 39  GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR-RIG 97

Query: 456 LV--SQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDG--YQTQVGEG 511
           +V   +    +   + ++  L      +  +  A          E L       T V   
Sbjct: 98  VVFGQKTQLWWDLPVIDSFYLLAA---IYDLPPARFKKRLDELSELLDLEELLDTPV--- 151

Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571
             QLS GQ+ R  IA A+L  P+IL LDE T  LD  ++  ++  L++    R T V+  
Sbjct: 152 -RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL-- 208

Query: 572 RLST--VRDV----DTIMVLKNGQVVESG 594
            L++  ++D+      ++V+  G+++  G
Sbjct: 209 -LTSHYMKDIEALARRVLVIDKGRLLYDG 236

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 27/221 (12%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY-DIRTLN-LRSLRRK 1083
            +L+  V  G    ++G +G+GK+T++ ++     P  G VL DG  D+  L   R  R  
Sbjct: 23   DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82

Query: 1084 IGLVQQEPALF-STTIYENIKYGNEDASEIEL-MKATKAANAHGFISRMPE--------- 1132
            IG   Q+P +F + T+ EN          +EL +   K+  A  F     E         
Sbjct: 83   IGRKFQKPTVFENLTVREN----------LELALNRDKSVFASLFARLRAEERRRIDELL 132

Query: 1133 ---GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1189
               G           LS GQKQ + I   + ++P +LLLDE  + +  A      E L  
Sbjct: 133  ATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192

Query: 1190 LMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
            L    + ++V H +  +R  ADK+ VL +G V   GS +++
Sbjct: 193  LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233

Length = 249

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 69.3 bits (170), Expect = 9e-13
 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 30/222 (13%)

Query: 390 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP----TSGKILLDGHDLKSL 445
              +   ++ ++  G+  A VG SGSGKS   +    +       T+G++LLDG  +   
Sbjct: 15  AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC 74

Query: 446 QLKWLREQMGLVSQEP--------ALFATSIANNILLGKE--DASMDRVIEAAKAANAHS 495
            L+    ++  + Q P         +   +    + LGK   DA++   +EA    NA  
Sbjct: 75  ALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAAR 132

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
            ++  P            ++SGG  QR+ IA A+L     ++ DE T+ LD  ++  +  
Sbjct: 133 VLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181

Query: 556 ALEKIMSNRT--TIVVAHRLSTV-RDVDTIMVLKNGQVVESG 594
            LE I+  R    ++V H +  V R  D + V+ +G++VE G
Sbjct: 182 LLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223

Length = 254

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 71.6 bits (176), Expect = 1e-12
 Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 20/239 (8%)

Query: 997  KEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 1056
               T     +  R++S +Y     + + + ++  + AG   A++G +G+GKST++ ++  
Sbjct: 3    TSDTTAPPLLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59

Query: 1057 FYDPISGTVLIDGYDIRTLN-LRSLRRKIGLVQQEPALF-STTIYENIKYG--NEDASEI 1112
               P SGT+ I G     L   ++ +  I LV QEP LF + ++ ENI +G     AS  
Sbjct: 60   IVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQ 119

Query: 1113 ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1172
            ++ +   A            G    V DR         Q V I R ++++  IL+LDE T
Sbjct: 120  KMKQLLAALGCQ-LDLDSSAG-SLEVADR---------QIVEILRGLMRDSRILILDEPT 168

Query: 1173 SALDTA-SENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
            ++L  A +E L     + L +G   + ++H+L  IR  AD+I+V++ G +A  G    L
Sbjct: 169  ASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227

Length = 510

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 21/222 (9%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085
            N+NL+V     ++++G +G+GK+TV + +  FY P  GT+L+ G  I  L    + R  G
Sbjct: 23   NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM-G 81

Query: 1086 LVQ--QEPALF-STTIYENIKYGNEDASEIELM----------KATKAA--NAHGFISRM 1130
            +V+  Q   LF   T+ EN+        +  L           +A   A   A  ++ R+
Sbjct: 82   VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141

Query: 1131 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1190
              G   H   +   L+ GQ++R+ IAR ++  P IL+LDE  + L+      + E + +L
Sbjct: 142  --GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAEL 199

Query: 1191 ME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
                  T +++ H +  +   +D+I V+ QG     G+ E++
Sbjct: 200  RNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241

Length = 255

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 23/225 (10%)

Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTLNL 1077
            D  I + +NL V  G   A++G +GSGKST+   +     Y+  SGT+L  G D+  L  
Sbjct: 12   DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71

Query: 1078 --RSLRRKIGLVQQEP--------ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 1127
              R+ R  + L  Q P          F  +   N +        ++L+   K   A   +
Sbjct: 72   DERA-RAGLFLAFQYPEEIPGVSNLEFLRSAL-NARRSARGEEPLDLLDFLKLLKAKLAL 129

Query: 1128 SRMPEGYQSHVGDRGVQ--LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
              M E +     +R V    SGG+K+R  I +  L  P + +LDE  S LD  +  ++ E
Sbjct: 130  LGMDEEFL----NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185

Query: 1186 ALDKLM-EGRTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGSHE 1227
             +++L    R+ +++ H  RL      D + VL  G++ + G  E
Sbjct: 186  GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 68.4 bits (168), Expect = 2e-12
 Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 26/220 (11%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-LRSLRRKI 1084
            +L+L V  G    ++G +G+GK+T++ ++     P  G+VL  G D+  L   +  R  I
Sbjct: 20   DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79

Query: 1085 GLVQQEPALF-STTIYENIKYGNEDASEIEL-MKATKAANAHGFISRMPE---------- 1132
            G   Q+P +F + T++EN+          EL +   K+  A  F     E          
Sbjct: 80   GRKFQKPTVFENLTVFENL----------ELALPRDKSVFASLFFRLSAEEKDRIEEVLE 129

Query: 1133 --GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1190
              G           LS GQKQ + I   ++++P +LLLDE  + +         E L  L
Sbjct: 130  TIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL 189

Query: 1191 MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
                + ++V H +  +R+ ADK+ VL QG V   GS +Q+
Sbjct: 190  AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 45/217 (20%)

Query: 1009 RNVSFKYPV-RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVIS-LVMRFYD-PISGTV 1065
            +N+++  PV      +  N++  V  G   A++G+SG+GK+T++  L  R     I+G +
Sbjct: 7    KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 1124
            LI+G  +     ++ +R  G V+Q+       T+ E +++               +A   
Sbjct: 67   LINGRPLD----KNFQRSTGYVEQQDVHSPNLTVREALRF---------------SALLR 107

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
            G                   LS  Q++R+ I   +   PSIL LDE TS LD+ +   I 
Sbjct: 108  G-------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148

Query: 1185 EALDKL-MEGRTTIMVAHRLS--TIRNADKIAVLQQG 1218
              L KL   G+  +   H+ S       D++ +L++G
Sbjct: 149  RFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 32/176 (18%)

Query: 1008 LRNVSF-KYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKST---VISLVMRFYDPISG 1063
             RN+SF     R  I I ++ +  V  G  + V+G+ GSG ST    ++        + G
Sbjct: 6    WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG 65

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             +  +G   +         +I  V +E   F T                E +        
Sbjct: 66   DIHYNGIPYKE-FAEKYPGEIIYVSEEDVHFPTLTVR------------ETLDFALRCKG 112

Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
            + F+             RG+  SGG+++RV+IA A++   S+L  D +T  LD+++
Sbjct: 113  NEFV-------------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 70.9 bits (175), Expect = 2e-12
 Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 60/211 (28%)

Query: 1008 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-PISG-TV 1065
            +  VS   P  P   I ++++L    G  + V+G +G+GKST++  +M   D    G   
Sbjct: 9    MNRVSKVVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLR-IMAGVDKEFEGEAR 65

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENI-------------------KYG 1105
               G             K+G + QEP L    T+ EN+                    Y 
Sbjct: 66   PAPGI------------KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113

Query: 1106 NEDASEIELMK-------ATKAANAHGFISRM---------PEGYQSHVGDRGV-QLSGG 1148
              DA    L            AA+A    S++         P        D  V +LSGG
Sbjct: 114  EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW------DAKVTKLSGG 167

Query: 1149 QKQRVAIARAILKNPSILLLDEATSALDTAS 1179
            +++RVA+ R +L+ P +LLLDE T+ LD  S
Sbjct: 168  ERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198

Length = 556

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 19/235 (8%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +    VS  Y     I     ++L ++ G  + ++G +G+GK+T++  +       SG +
Sbjct: 6    LSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62

Query: 1066 LIDGYDIRTLNL-RSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 1123
            + DG DI      + +R  + +V +   +FS  T+ EN+  G   A   +  +  +    
Sbjct: 63   VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWV 120

Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
            +    R+ E      G     +SGG++Q +AI RA++  P +LLLDE +  L   +  +I
Sbjct: 121  YELFPRLHERRIQRAG----TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIII 173

Query: 1184 QEALDKLM----EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
            Q+  D +     +G T  +V    +  ++ AD+  VL+ G V    + + LL  E
Sbjct: 174  QQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANE 228

Length = 237

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 70.2 bits (173), Expect = 3e-12
 Identities = 56/242 (23%), Positives = 111/242 (45%), Gaps = 37/242 (15%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066
            E+RN+S             +++  V AG  L + G  G+G++ +   +       SG +L
Sbjct: 265  EVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEIL 317

Query: 1067 IDGYDIRTLNLRS----LRRKIGLV---QQEPALFST-TIYENIKYGN--EDASEIELMK 1116
            +DG   + + +RS    ++  I  V   ++   L    +I ENI   +    +    + +
Sbjct: 318  LDG---KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDR 374

Query: 1117 ATKAANAHGFISRM---PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
              + A A  +I R+       +  +G     LSGG +Q+V +AR +  +P +L+LDE T 
Sbjct: 375  RKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTR 430

Query: 1174 ALDTASENLIQEALDKLM-EGRTTIMVAHRLST-----IRNADKIAVLQQGKVAEIGSHE 1227
             +D  ++  I   + +L  EG+  +M+    S+     +  +D+I V+++G++      E
Sbjct: 431  GIDVGAKAEIYRLIRELAAEGKAILMI----SSELPELLGLSDRILVMREGRIVGELDRE 486

Query: 1228 QL 1229
            + 
Sbjct: 487  EA 488

Length = 500

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 70.3 bits (173), Expect = 3e-12
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 37/231 (16%)

Query: 385 AYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 444
               R     ++++F V AG+     G +G+G+S ++  +  L +P SG+ILL+G D+  
Sbjct: 265 VKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324

Query: 445 LQ--LKWL----------REQMGLVSQEPALFATSIANNILLG---KEDASMDRVIEAAK 489
                +            R   GLV         S+A N++LG   K+  S    ++   
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRA 378

Query: 490 AANAHSFVEGL-------PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542
                 F   L                     LSGG +Q++ +AR + R P +L+  + T
Sbjct: 379 IR---KFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPT 431

Query: 543 SALDAES-ELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVV 591
             LD  + E I +R LE   + +  ++++  L  + ++ D I V+  G++V
Sbjct: 432 RGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482

Length = 501

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 36/183 (19%)

Query: 1034 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG-------- 1085
            GR +  +G +G+GKST + ++  +  P SG+V + G D+   N + ++R IG        
Sbjct: 28   GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPL 86

Query: 1086 ---LVQQEPALFSTTIY--ENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD 1140
               +  +E   F   IY  +           IEL+               PE ++  +G 
Sbjct: 87   YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR------------PEQHKK-IG- 132

Query: 1141 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD----TASENLIQE-ALDKLMEGRT 1195
               QLS G +QRV +A+A++ +P +L+LDE T+ LD        N+I+    DK +   T
Sbjct: 133  ---QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILST 189

Query: 1196 TIM 1198
             IM
Sbjct: 190  HIM 192

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 67.7 bits (165), Expect = 4e-12
 Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 16/220 (7%)

Query: 1013 FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG--Y 1070
            F+Y    D  + + LNL  S      +VG +G GKST+   +     P  G VL  G   
Sbjct: 9    FRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65

Query: 1071 DIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 1128
            D     L +LR+++  V Q+P   +F T I  +I +   +    E     +   A   + 
Sbjct: 66   DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125

Query: 1129 RMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1187
                    H   + +Q LS GQK+RVAIA A++     LLLDE T+ LD A    +   +
Sbjct: 126  ------AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179

Query: 1188 DKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225
             +++ +G   I+ +H +  I   +D + VL+QG++   G+
Sbjct: 180  RRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219

Length = 271

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 69.9 bits (171), Expect = 4e-12
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 18/209 (8%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--PTSGKILLDGHDLKSLQLKWLRE 452
           + ++  V  G+     G +G+GKST++ ++  +Y      G+I   G  LK+  ++    
Sbjct: 18  DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTER 77

Query: 453 Q-MGLVSQEPALFAT-SIANNILLGKE------DASMDRVIEAAKAANAHSFVEGLPDGY 504
             + ++ QE  L    S+A NI LG E        + + +   AK       ++      
Sbjct: 78  AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV-- 135

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRALEKIMSN 563
              VG       GGQ+Q + IA+A+ +  ++L+LDE +S+L + E+E+++    +     
Sbjct: 136 TRPVG----DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191

Query: 564 RTTIVVAHRLSTVRDV-DTIMVLKNGQVV 591
              + ++H+L+ V+ V DTI V+++GQ V
Sbjct: 192 VACVYISHKLNEVKAVCDTICVIRDGQHV 220

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 66/245 (26%), Positives = 102/245 (41%), Gaps = 63/245 (25%)

Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--YDPISGTVLIDGYDIRTLN- 1076
            +  I + LNL ++ G   A++G +GSGKST+  ++     Y  + G +L  G  I  L  
Sbjct: 19   ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78

Query: 1077 --------------------------LR----SLRRKIGLVQQEPALFSTTIYENIKYGN 1106
                                      LR    S R+  GL + +P  F   I E +K   
Sbjct: 79   EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG 138

Query: 1107 EDASEIELMKATKAANAHGFISR-MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165
             D S               F+SR + EG+           SGG+K+R  I +  L +  +
Sbjct: 139  MDPS---------------FLSRNVNEGF-----------SGGEKKRNEILQMALLDSEL 172

Query: 1166 LLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAH--RLSTIRNADKIAVLQQGKVAE 1222
             +LDE  S LD  +  +I E ++KLM    + I++ H  RL      D + V+Q GK+ +
Sbjct: 173  AILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232

Query: 1223 IGSHE 1227
             G  E
Sbjct: 233  TGDAE 237

Length = 252

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 64.8 bits (159), Expect = 4e-12
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 7/96 (7%)

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
            G ++        +      QLSGG+K R+A+A+ +L+NP++LLLDE T+ LD  S   ++
Sbjct: 55   GIVTWGSTVKIGYF----EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE 110

Query: 1185 EALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219
            EAL +     T I+V+H    +   A KI  L+ GK
Sbjct: 111  EALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 70.0 bits (172), Expect = 4e-12
 Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 30/235 (12%)

Query: 1006 IELRNVSFKYP-----VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060
            +ELRNV+F Y      V P       +NL +  G  L ++G +GSGKST+  L+   Y P
Sbjct: 323  LELRNVTFAYQDNGFSVGP-------INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375

Query: 1061 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKA 1120
             SG +L+DG  +        R+    V  +  LF   +      G E        K    
Sbjct: 376  QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL------GPEG-------KPANP 422

Query: 1121 ANAHGFISRMPEGYQSHVGD---RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD- 1176
            A    ++ R+   ++  + D     ++LS GQK+R+A+  A+ +   ILLLDE  +  D 
Sbjct: 423  ALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482

Query: 1177 TASENLIQEALDKLME-GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1230
                   Q  L  L E G+T   ++H      +AD++  ++ G+++E+   E+  
Sbjct: 483  HFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDA 537

Length = 547

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 38/247 (15%)

Query: 999  VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY 1058
            VT   G+  LR+ SF  P                 G   A+VG +GSGKST+   +M F 
Sbjct: 14   VTWRNGHTALRDASFTVP----------------GGSIAALVGVNGSGKSTLFKALMGFV 57

Query: 1059 DPISGTVLIDGYDIRTLNLRSLRRK-IGLVQQE-------PALFSTTIYENIKYGNEDAS 1110
               SG + I G   R    ++L++  +  V Q        P L    +    +YG+    
Sbjct: 58   RLASGKISILGQPTR----QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMG-RYGH--MG 110

Query: 1111 EIELMKATKAANAHGFISR--MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL 1168
             +   K          ++R  M E     +G    +LSGGQK+RV +ARAI +   ++LL
Sbjct: 111  WLRRAKKRDRQIVTAALARVDMVEFRHRQIG----ELSGGQKKRVFLARAIAQQGQVILL 166

Query: 1169 DEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1227
            DE  + +D  +E  I   L +L  EG+T ++  H L ++       V+ +G V   G  E
Sbjct: 167  DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTE 226

Query: 1228 QLLRKEN 1234
                 EN
Sbjct: 227  TTFTAEN 233

Length = 272

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 33/240 (13%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           ++   V F   +R   +F+N++ +V  GK  A +GPSG GK+T++ ++     P  G+IL
Sbjct: 8   VDMRGVSFTRGNRC--IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65

Query: 437 LDGHDLKSL---QLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAAN 492
            DG ++ ++   +L  +R++M ++ Q  ALF   ++ +N+      A   R      A  
Sbjct: 66  FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNV------AYPLREHTQLPAPL 119

Query: 493 AHSFVE------GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
            HS V       GL    +    E    LSGG  +R A+ARA+   P +++ DE     D
Sbjct: 120 LHSTVMMKLEAVGLRGAAKLMPSE----LSGGMARRAALARAIALEPDLIMFDEPFVGQD 175

Query: 547 AESELIVQRALEKIMSNR------TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 599
                I    L K++S        T +VV+H +  V  + D   ++ + ++V  G+   L
Sbjct: 176 P----ITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231

Length = 269

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 69.6 bits (171), Expect = 5e-12
 Identities = 63/255 (24%), Positives = 118/255 (46%), Gaps = 55/255 (21%)

Query: 1007 ELRNVSFKYP-VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
                +   +P V+      ++++    AG+  A++G++G+GKST++ ++   Y P +G++
Sbjct: 6    SFDGIGKTFPGVKA----LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI 61

Query: 1066 LIDGYDIRTLNLR-SLRRKIGLVQQE----PALFSTTIYENIKYGNEDASEIELMKATKA 1120
            LIDG ++R  +   +L   + ++ QE    P +   T+ EN+  G             + 
Sbjct: 62   LIDGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLG-------------QL 105

Query: 1121 ANAHGFISRMPEGYQSHVGDR----GVQ---------LSGGQKQRVAIARAILKNPSILL 1167
             +  G ++R          ++    GV          LS GQ+Q V IA+A+ +N  ++ 
Sbjct: 106  PHKGGIVNR--RLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA 163

Query: 1168 LDEATSALDT-ASENL--IQEALDKLMEGRTTIMVAHRLSTI-RNADKIAVLQQGK---- 1219
             DE TS+L     E L  +   L    EGR  + V+HR+  I    D I V + G+    
Sbjct: 164  FDEPTSSLSAREIEQLFRVIRELRA--EGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221

Query: 1220 ---VAEIGSHEQLLR 1231
               +A++   +QL++
Sbjct: 222  FDDMAQV-DRDQLVQ 235

Length = 501

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 25/221 (11%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQLKWL 450
           + + LN S++ G+  A +GP+GSGKST+  ++     Y+   G IL  G  +  L+ +  
Sbjct: 22  ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-E 80

Query: 451 REQMGL------------VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 498
           R  +G+            VS    L     +     G  +      +E  +  N    + 
Sbjct: 81  RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELD---PLEFLEIINEKLKLV 137

Query: 499 GLPDGYQTQ-VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 557
           G+   + ++ V EG    SGG+K+R  I +  L + ++ +LDE  S LD ++  I+   +
Sbjct: 138 GMDPSFLSRNVNEG---FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194

Query: 558 EKIM-SNRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESGT 595
            K+M S  + I++ H  RL      D + V++NG+++++G 
Sbjct: 195 NKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235

Length = 252

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 29/183 (15%)

Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI----DGYDIRTLNLR 1078
            +  N++L V+AG  + + G SGSGKST++  +   Y P  G +L+    +  D+ T   R
Sbjct: 26   VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85

Query: 1079 SL----RRKIGLVQQEPALFSTTI--YENIKYGNEDASEIELMKATKAANAHGFISRMPE 1132
             +    R  IG V Q    F   I     +    E      + +    A A   ++R+  
Sbjct: 86   EVLEVRRTTIGYVSQ----FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRL-- 139

Query: 1133 GYQSHVGDRGVQL-----SGGQKQRVAIARAILKNPSILLLDEATSALDTASE----NLI 1183
                ++ +R   L     SGG++QRV IAR  + +  ILLLDE T++LD  +      LI
Sbjct: 140  ----NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195

Query: 1184 QEA 1186
            +EA
Sbjct: 196  REA 198

Length = 235

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 67.2 bits (164), Expect = 7e-12
 Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 26/217 (11%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450
           H    + +F+V  G   A VG +GSGKST+   +       SGKI + G   +    + L
Sbjct: 20  HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QAL 75

Query: 451 REQM-GLVSQEPAL---FATSIANNILLGK--------EDASMDRVIEAAKAANAHSFVE 498
           ++ +   V Q   +   F   + + +++G+             DR I  A  A       
Sbjct: 76  QKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV----- 130

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
            + +    Q+GE    LSGGQK+R+ +ARA+ +  +++LLDE  + +D ++E  +   L 
Sbjct: 131 DMVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186

Query: 559 KIMSN-RTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 594
           ++    +T +V  H L +V +     V+  G V+ SG
Sbjct: 187 ELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223

Length = 272

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 69.2 bits (170), Expect = 8e-12
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 17/168 (10%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
            +E   V FAY      V   +N ++  G+    +G +GSGKST+  ++  LY+P SG+I
Sbjct: 322 TLELRNVTFAYQDNGFSV-GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 495
           LLDG  + + Q +  R+    V  +  LF        LLG E        + A  A    
Sbjct: 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ------LLGPEG-------KPANPALVEK 427

Query: 496 FVEGLPDGYQTQVGEG---GTQLSGGQKQRIAIARAVLRNPKILLLDE 540
           ++E L   ++ ++ +G     +LS GQK+R+A+  A+     ILLLDE
Sbjct: 428 WLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475

Length = 547

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 69.2 bits (170), Expect = 8e-12
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 41/187 (21%)

Query: 409 FVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSI 468
            +GP+G GK+T + ++  + +P  G       DLK             VS +P   +   
Sbjct: 372 ILGPNGIGKTTFVKLLAGVIKPDEGSEE----DLK-------------VSYKPQYISP-- 412

Query: 469 ANNILLGKEDASMDRVIEAAKAANAHS---FVE-----GLPDGYQTQVGEGGTQLSGGQK 520
                    D +++ ++ +A  +   S     E      L D  +  V E    LSGG+ 
Sbjct: 413 -------DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDE----LSGGEL 461

Query: 521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRD 578
           QR+AIA A+ R   + LLDE ++ LD E  +IV + + + + N   T +VV H +  +  
Sbjct: 462 QRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521

Query: 579 V-DTIMV 584
           V D ++V
Sbjct: 522 VSDRLIV 528

Length = 591

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 66.0 bits (161), Expect = 9e-12
 Identities = 64/208 (30%), Positives = 97/208 (46%), Gaps = 30/208 (14%)

Query: 401 VDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKWLR-EQMGL 456
           V  G+T A +G SGSGKST+++++  L + +SG++ L G  L  +       LR + +G 
Sbjct: 33  VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF 92

Query: 457 VSQEPALFATSIA-NNI-----LLGKEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
           V Q   L  T  A  N+     L G+    S +      +       ++ LP        
Sbjct: 93  VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-------- 144

Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NR---- 564
               QLSGG++QR+A+ARA    P +L  DE T  LD ++     +  + + S NR    
Sbjct: 145 ---AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG---DKIADLLFSLNREHGT 198

Query: 565 TTIVVAHRLSTVRDVDTIMVLKNGQVVE 592
           T I+V H L      D  + L NGQ+ E
Sbjct: 199 TLILVTHDLQLAARCDRRLRLVNGQLQE 226

Length = 228

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 59/216 (27%), Positives = 111/216 (51%), Gaps = 16/216 (7%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLR 451
               ++  ++ G+    +G +G+GK+T++  +      TSG+I+ DG D+   Q  K +R
Sbjct: 20  ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79

Query: 452 EQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE 510
           E + +V +   +F+  ++  N+ +G   A  D+  E  K        E  P  ++ ++  
Sbjct: 80  EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-----YELFPRLHERRIQR 134

Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRT---TI 567
            GT +SGG++Q +AI RA++  P++LLLDE +  L   + +I+Q+  + I   R    TI
Sbjct: 135 AGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQGMTI 190

Query: 568 VVAHRLS--TVRDVDTIMVLKNGQVVESGTHVDLIS 601
            +  + +   ++  D   VL+NG VV   T   L++
Sbjct: 191 FLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226

Length = 237

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 7/79 (8%)

Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH-R 572
           QLSGG+K R+A+A+ +L NP +LLLDE T+ LD ES   ++ AL++     T I+V+H R
Sbjct: 70  QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVSHDR 127

Query: 573 --LSTVRDVDTIMVLKNGQ 589
             L  V     I+ L++G+
Sbjct: 128 YFLDQV--ATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 68.5 bits (168), Expect = 1e-11
 Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 17/211 (8%)

Query: 1019 PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 1078
            P +       L V  GR +A+VG++G+GKST++ ++   Y   +G++L  G ++     +
Sbjct: 15   PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK 74

Query: 1079 -SLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKA-ANAHGFISRMPEGYQ 1135
             S    IG++ QE  L    TI ENI  G E  +    +   K  A A   ++R+   + 
Sbjct: 75   SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS 134

Query: 1136 SH--VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL-DTASENL---IQEALDK 1189
            S   VG+    LS G++Q V IA+ +     ++++DE T AL DT +E+L   I+E    
Sbjct: 135  SDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS- 189

Query: 1190 LMEGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219
              +GR  + ++HRL  I    D + V + G+
Sbjct: 190  --QGRGIVYISHRLKEIFEICDDVTVFRDGQ 218

Length = 501

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 67.3 bits (165), Expect = 3e-11
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 32/204 (15%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD-----GHDLKSLQL 447
           + ++++ S   G     +G +G+GKST++ ++  + +  +G+         G+  +  QL
Sbjct: 20  ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQL 79

Query: 448 ---KWLRE--QMGLVSQEPAL---------FATSIANNILLGKEDASMDRVIEAAKAANA 493
              K +RE  + G+   + AL         FA   A+   L  E A +  +I+AA A + 
Sbjct: 80  DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDL 139

Query: 494 HSFVE------GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
              +E        P      V    T+LSGG+++R+A+ R +L  P +LLLDE T+ LDA
Sbjct: 140 DRKLEIAMDALRCPPW-DADV----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA 194

Query: 548 ESELIVQRALEKIMSNRTTIVVAH 571
           ES   +++ L++     T + V H
Sbjct: 195 ESVAWLEQHLQEYPG--TVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 23/221 (10%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQLKWL 450
           +   LN  V  G+  A +GP+GSGKST+ + +  +  YE T G +   G DL  L  +  
Sbjct: 16  ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE-- 73

Query: 451 REQMG----LVSQEPA--------LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 498
            ++ G    +  Q P          F  +  N +   +    +DR           + ++
Sbjct: 74  -DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK 132

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
              D     V  G    SGG+K+R  I +  +  P++ +LDE+ S LD ++  IV   + 
Sbjct: 133 MPEDLLTRSVNVG---FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189

Query: 559 KIMS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESGTH 596
            +    R+ I+V H  R+      D + VL  G++V+SG  
Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230

Length = 248

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 66.8 bits (163), Expect = 4e-11
 Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 19/198 (9%)

Query: 404 GKTFAFVGPSGSGKSTIISMVQ-RLYEPT-SGKILLDGHDLKSLQLKWLREQMGLVSQEP 461
           G+  A +GPSGSGKST+++ +  R+     +G IL +        LK    + G V+Q+ 
Sbjct: 94  GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDD 149

Query: 462 ALFA------TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ- 514
            L+       T +  ++L   +  +    I  A++  +     GL     T +G    + 
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL---GLTKCENTIIGNSFIRG 206

Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA-HRL 573
           +SGG+++R++IA  +L NP +L+LDE TS LDA +   +   L  +     TIV + H+ 
Sbjct: 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQP 266

Query: 574 ST--VRDVDTIMVLKNGQ 589
           S+   +  D+++VL  G+
Sbjct: 267 SSRVYQMFDSVLVLSEGR 284

Length = 659

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 66.7 bits (163), Expect = 4e-11
 Identities = 49/223 (21%), Positives = 108/223 (48%), Gaps = 17/223 (7%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I +  +   +     +   +++NL V  G   A++G++G+GKST++ ++   ++P  GT+
Sbjct: 6    ISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62

Query: 1066 LIDGYDIRTLNLR-SLRRKIGLVQQEPALFST-TIYENIKYGNEDASE------IELMKA 1117
             I+  +   L+ + + +  IG++ QE ++    T+ EN+  G     +      I+  + 
Sbjct: 63   TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
               A        +       V +    LS   KQ + IA+ ++ +  ++++DE TS+L  
Sbjct: 123  RVRAAMMLLRVGLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178

Query: 1178 ASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQG 1218
               + +   +++L  EG   + ++H+L+ IR   D+  V++ G
Sbjct: 179  KEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221

Length = 510

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 55/251 (21%)

Query: 1006 IELRNVSFKYPVRP------------------DITIFENLNLKVSAGRSLAVVGQSGSGK 1047
            IE+ N+S  Y V                    ++   + ++  +  G  +  +G +G+GK
Sbjct: 1    IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60

Query: 1048 STVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLV--QQE------PAL----FS 1095
            +T + ++     P SG V + G        +   R+IG+V  Q+       P +      
Sbjct: 61   TTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLL 119

Query: 1096 TTIY--ENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQR 1152
              IY     ++        EL+                      + D  V QLS GQ+ R
Sbjct: 120  AAIYDLPPARFKKRLDELSELLDLE------------------ELLDTPVRQLSLGQRMR 161

Query: 1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR-TTIMV-AHRLSTI-RNA 1209
              IA A+L  P IL LDE T  LD  ++  I+  L +    R TT+++ +H +  I   A
Sbjct: 162  AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALA 221

Query: 1210 DKIAVLQQGKV 1220
             ++ V+ +G++
Sbjct: 222  RRVLVIDKGRL 232

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 66.4 bits (162), Expect = 5e-11
 Identities = 96/419 (22%), Positives = 163/419 (38%), Gaps = 78/419 (18%)

Query: 843  FVAEQLFLKGFGGDYNRAYSRATSVARE----AIANIRTVAAYGIEKRISIQFASELSQP 898
            F+  ++ L G    YN  Y RA ++ RE    A    R V  YG  ++  ++ A  L   
Sbjct: 100  FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL--- 156

Query: 899  NKQA-----------LLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK 947
            NKQA           L              LL +         A V I  K +    +  
Sbjct: 157  NKQARLLILDEPSSSLTEKETEI-------LLDIIRDLKAHGVACVYISHKLNEVKAVCD 209

Query: 948  SFMVLIITALAVAETLALA---PDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKG 1004
            +  V I     VA          DI+  +  +G     LY      P +P      EI  
Sbjct: 210  TICV-IRDGQHVATKDMSTMSEDDII--TMMVGREITSLY------PHEPH-----EIGD 255

Query: 1005 NI-ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-PIS 1062
             I E RN++    + P     ++++  +  G  L V G  G+G++ ++  +   Y     
Sbjct: 256  VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE 315

Query: 1063 GTVLIDGYDIRTLN-LRSLRRKIGLVQQE------------------PALFSTTIYENIK 1103
            G V I+G  +   N  +++R  I +V ++                    L S      I 
Sbjct: 316  GNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRID 375

Query: 1104 YGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163
               E       ++  K   A  F   +P G          +LSGG +Q+  +A+ +L NP
Sbjct: 376  AAAELQIIGSAIQRLKVKTASPF---LPIG----------RLSGGNQQKAVLAKMLLTNP 422

Query: 1164 SILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220
             +L+LDE T  +D  ++  I + +++L  EG   I+V+  L+ +   +D++ V+ +GK+
Sbjct: 423  RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 46/182 (25%)

Query: 404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQLKWLREQMGLVSQ-- 459
            +    +GP+G GK+T I M+  + +P  G I ++   +  K   +K   +  G V    
Sbjct: 25  SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIK--ADYEGTVRDLL 82

Query: 460 --------EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
                       F T IA  + +   +  +DR                       +V   
Sbjct: 83  SSITKDFYTHPYFKTEIAKPLQI---EQILDR-----------------------EV--- 113

Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN--RTTIVV 569
             +LSGG+ QR+AIA  + ++  I LLDE ++ LD E  L+  + + +   N  +T  VV
Sbjct: 114 -PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVV 172

Query: 570 AH 571
            H
Sbjct: 173 EH 174

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 22/171 (12%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           VF  L+F VDAG+     G +G+GK+T++ ++  L    SG+I +DG             
Sbjct: 26  VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRS---R 82

Query: 453 QMGLVSQEPALFA--TSIAN----NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 506
            M  +   P L A  +++ N      L G+    M          +A + V GL     T
Sbjct: 83  FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQM--------PGSALAIV-GLAGYEDT 133

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 557
            V     QLS GQK+R+A+AR  L    + LLDE  + LD E   +V R +
Sbjct: 134 LV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180

Length = 214

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 65.2 bits (160), Expect = 1e-10
 Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 34/220 (15%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLR 451
              +++F+V AG+     G  G+G++ +   +      +SG+ILLDG  ++       ++
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333

Query: 452 EQMGLVS---QEPALFAT-SIANNILLGKEDASMDR------VIEAAKAANAHSFVEGL- 500
             +  V    +   L    SIA NI L    AS+ R      +    + A A  ++  L 
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITL----ASLRRFSRRGLIDRRKERALAERYIRRLR 389

Query: 501 ---PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD--AESE---LI 552
              P   Q  +G     LSGG +Q++ +AR +  +PK+L+LDE T  +D  A++E   LI
Sbjct: 390 IKTPSPEQ-PIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444

Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVV 591
            + A E     +  ++++  L  +  + D I+V++ G++V
Sbjct: 445 RELAAE----GKAILMISSELPELLGLSDRILVMREGRIV 480

Length = 500

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 65.6 bits (161), Expect = 1e-10
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 41/186 (22%)

Query: 410 VGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA 469
           VGP+G GK+T   ++  + +P  G++  +        LK        +S +P        
Sbjct: 371 VGPNGIGKTTFAKLLAGVLKPDEGEVDPE--------LK--------ISYKP-------- 406

Query: 470 NNILLGKEDASMDRVIEAAKAANAHSFVE-------GLPDGYQTQVGEGGTQLSGGQKQR 522
              +    D +++ ++ +       S+ +        L       V +    LSGG+ QR
Sbjct: 407 -QYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKD----LSGGELQR 461

Query: 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRD-- 578
           +AIA  + R+  + LLDE ++ LD E  L V +A+ +I   R  T +VV H +  + D  
Sbjct: 462 VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMI-DYI 520

Query: 579 VDTIMV 584
            D +MV
Sbjct: 521 SDRLMV 526

Length = 590

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 46/199 (23%), Positives = 63/199 (31%), Gaps = 67/199 (33%)

Query: 404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGK-ILLDGHDLKSLQLKWLREQMGLVSQEPA 462
           G+    VGP GSGK+T+   + R   P  G  I +DG D+    L  L            
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL----------- 50

Query: 463 LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR 522
                                                        VG      SG  + R
Sbjct: 51  ------------------------------------------LIIVGGKKASGSGELRLR 68

Query: 523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALE-------KIMSNRTTIVVAHRLST 575
           +A+A A    P +L+LDE TS LDAE E ++    E       K   N T I+  +    
Sbjct: 69  LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128

Query: 576 VRD------VDTIMVLKNG 588
           +         D  +VL   
Sbjct: 129 LGPALLRRRFDRRIVLLLI 147

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 65/299 (21%), Positives = 124/299 (41%), Gaps = 74/299 (24%)

Query: 344 AAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH----MVFE---- 395
            A  + I +I++  H + +     ++   +   +   E+   YP  PH    ++ E    
Sbjct: 205 KAVCDTICVIRDGQHVATKDMS-TMSEDDIITMMVGREITSLYPHEPHEIGDVILEARNL 263

Query: 396 --------------NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-SGKILLDGH 440
                         +++FS+  G+     G  G+G++ ++  +   Y     G + ++G 
Sbjct: 264 TCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGK 323

Query: 441 --DLKSLQLKWLREQMGLVSQE-------PALFATSIANNILLG--------------KE 477
             D+++   + +R  + +V ++       P L    +  NI L                E
Sbjct: 324 PVDIRNPA-QAIRAGIAMVPEDRKRHGIVPIL---GVGKNITLSVLKSFCFKMRIDAAAE 379

Query: 478 DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL 537
              +   I+  K   A  F   LP G          +LSGG +Q+  +A+ +L NP++L+
Sbjct: 380 LQIIGSAIQRLKVKTASPF---LPIG----------RLSGGNQQKAVLAKMLLTNPRVLI 426

Query: 538 LDEATSALD--AESE---LIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQV 590
           LDE T  +D  A+ E   LI Q A E +      IVV+  L+ V  + D ++V+  G++
Sbjct: 427 LDEPTRGVDVGAKYEIYKLINQLAQEGV----AIIVVSSELAEVLGLSDRVLVIGEGKL 481

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 63.7 bits (155), Expect = 4e-10
 Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 32/213 (15%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR--------LYEPTSGKILLDGHDLKS 444
           V  NLN  +  G   A VG SG+GK+T++ M+           Y P SGK+ +  + + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457

Query: 445 LQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
           L       + G V+    L + +   N  +         ++  A  ++A  +     +  
Sbjct: 458 LIPGEYEPEFGEVTILEHLRSKTGDLNAAVE--------ILNRAGLSDAVLYRRKFSE-- 507

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564
                     LS GQK+R  +A+ +   P +LL+DE  + LD  + + V R + ++    
Sbjct: 508 ----------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA 557

Query: 565 --TTIVVAHRLSTVR--DVDTIMVLKNGQVVES 593
             T IVV HR         DT++++  G+V  +
Sbjct: 558 GITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590

Length = 593

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 43/210 (20%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKST---IISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           + +  V  G+    +G  GSG ST    ++          G I  +G   K    K+  E
Sbjct: 25  DFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGE 84

Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
            +  VS+E   F T      L  +E       ++ A     + FV G+            
Sbjct: 85  II-YVSEEDVHFPT------LTVRE------TLDFALRCKGNEFVRGI------------ 119

Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQ--RALEKIMSNRTTIVV 569
              SGG+++R++IA A++    +L  D +T  LD+ + L I++  R +  ++  +TT  V
Sbjct: 120 ---SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL--KTTTFV 174

Query: 570 AHRLSTVRD-----VDTIMVLKNGQVVESG 594
           +  L    D      D ++VL  G+ +  G
Sbjct: 175 S--LYQASDEIYDLFDKVLVLYEGRQIYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 61.8 bits (150), Expect = 7e-10
 Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 61/266 (22%)

Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV--------------MRFYDPISGTVL 1066
            +   + +++ ++ G    +VG+SGSGKS +   +              MRF D       
Sbjct: 20   VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD------- 72

Query: 1067 IDGYDIRTLNLRSLRRKIG----LVQQEPAL-------FSTTIYENI-----------KY 1104
                D+  L+ R  R+ +G    ++ QEP             + +NI           ++
Sbjct: 73   ---IDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRF 129

Query: 1105 GNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 1164
            G      IEL+      +    +   P            +L+ G+ Q+V IA A+   P 
Sbjct: 130  GWRKRRAIELLHRVGIKDHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPR 178

Query: 1165 ILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1221
            +L+ DE T++++  ++  I   L +L +    T ++++H L  I   ADKI VL  G+  
Sbjct: 179  LLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTV 238

Query: 1222 EIGSHEQLLRKENGIYKQ-LIRLQQD 1246
            E    E+L+   +  Y Q LIR   D
Sbjct: 239  ESAPSEELVTMPHHPYTQALIRAIPD 264

Length = 330

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 62.3 bits (151), Expect = 9e-10
 Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 21/230 (9%)

Query: 372 KLAGQIEFSEVCFAYP---SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 428
           K    IE  +V                 ++  +  G     VG +G GKST+  +   LY
Sbjct: 333 KSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY 392

Query: 429 EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAA 488
            P  G+ILLDG  + +      R+    +  +  LF   I  +     E AS+D      
Sbjct: 393 IPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD---EGEHASLD------ 443

Query: 489 KAANAHSFVEGLPDGYQTQVGEGG----TQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544
              NA  +++ L    + ++ +GG    T LS GQ++R+A+  A L +  ILL DE  + 
Sbjct: 444 ---NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAAD 500

Query: 545 LDAESELIVQRALEKIMSNR--TTIVVAHRLSTVRDVDTIMVLKNGQVVE 592
            D   +      L   +  +  T I+++H        D I+ L  G +V+
Sbjct: 501 QDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 60/223 (26%)

Query: 392 MVFENLNFSVDA-----------------GKTFAFVGPSGSGKSTIISMV-QRLYEPT-S 432
           + ++NLN++V                   G   A +G SG+GK+T++ ++  R      +
Sbjct: 4   LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT 63

Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
           G+IL++G  L     K  +   G V Q+                       V EA +   
Sbjct: 64  GEILINGRPLD----KNFQRSTGYVEQQDVHSPNL---------------TVREALRF-- 102

Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
             + + GL               S  Q++R+ I   +   P IL LDE TS LD+++   
Sbjct: 103 -SALLRGL---------------SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYN 146

Query: 553 VQRALEKI-MSNRTTIVVAHRLSTV--RDVDTIMVLK-NGQVV 591
           + R L+K+  S +  +   H+ S       D +++LK  G+ V
Sbjct: 147 IVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 61.7 bits (150), Expect = 1e-09
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 19/221 (8%)

Query: 1008 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067
            + N+S  +P    +   +N+NLKV      A++G++G+GKST++  +   Y   SG++L 
Sbjct: 1    MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF 57

Query: 1068 DGYDIRTLNLR-SLRRKIGLVQQEPALF-STTIYENIKYGNED-----ASEIELMKATKA 1120
             G +I   + + +L   I +V QE  L    ++ +N+  G          + ++ + TKA
Sbjct: 58   QGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKA 117

Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
                  I   P         +   LS  Q Q + IA+A   N  I+++DE TS+L     
Sbjct: 118  IFDELDIDIDPR-------AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170

Query: 1181 NLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219
            N +   + KL E G   + ++H++  I    D+I +L+ G+
Sbjct: 171  NHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211

Length = 491

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 61.5 bits (150), Expect = 2e-09
 Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 34/191 (17%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE  N+S  +    D  + ++L+ K+  G  + V+G +G+GKST+  ++     P SGT+
Sbjct: 323  IEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQ-----EPALFSTTIYENIKYGNEDASEIELMKATKA 1120
             I G  +          K+  V Q     +P   + T++E I  G +    I+L K    
Sbjct: 380  KI-GETV----------KLAYVDQSRDALDP---NKTVWEEISGGLD---IIQLGKRE-- 420

Query: 1121 ANAHGFISR---MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
              +  ++ R        Q  VG    QLSGG++ RV +A+ +    ++LLLDE T+ LD 
Sbjct: 421  VPSRAYVGRFNFKGSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476

Query: 1178 ASENLIQEALD 1188
             +   ++EAL 
Sbjct: 477  ETLRALEEALL 487

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 61.7 bits (151), Expect = 2e-09
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 54/177 (30%)

Query: 410 VGPSGSGKSTIISMVQRLYEPTSGK-ILLDGHDLKSLQLKWLREQMGLVSQEP------- 461
           +G +G+GKST++ ++  + +   G+     G             ++G + QEP       
Sbjct: 39  LGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI------------KVGYLPQEPQLDPEKT 86

Query: 462 -----------------------ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 498
                                  A +A   A+   L  E   +  +I+AA A +  S +E
Sbjct: 87  VRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLE 146

Query: 499 ------GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
                   P     +V    T+LSGG+++R+A+ R +L  P +LLLDE T+ LDAES
Sbjct: 147 IAMDALRCPPW-DAKV----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198

Length = 556

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 61.0 bits (148), Expect = 3e-09
 Identities = 90/314 (28%), Positives = 129/314 (41%), Gaps = 64/314 (20%)

Query: 391 HMVFENLNFSV-------DAGKTFAF------VGPSGSGKSTIIS-MVQRLYE--PTSGK 434
           HM  EN + SV       DA  T AF      VG +G+GK+T +  M     +  P + +
Sbjct: 179 HM--ENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ 236

Query: 435 IL-----LDGHDLKSLQ---------LKWLREQMGLVSQ-----EPALFATSIANNILLG 475
           IL     + G D  +LQ          + L E+  LV+Q                N    
Sbjct: 237 ILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGV 296

Query: 476 KEDASMDRV---------IEAAKA-ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525
            +DA   R+         I+A  A A A S + GL    + QV    T  SGG + RIA+
Sbjct: 297 DKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKT-FSGGWRMRIAL 355

Query: 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 585
           ARA+   P +LLLDE T+ LD  + L ++  L K    +T IVV+H    +  V T ++ 
Sbjct: 356 ARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDILH 413

Query: 586 KNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYD 645
            +GQ         L++  G+Y      +  E L N      S     S  + F    RY+
Sbjct: 414 LHGQ--------KLVTYKGDYDTFERTR-EEQLKNQQKAFESNERSRSHMQAFIDKFRYN 464

Query: 646 VEFESSKRRELQSS 659
                +KR  L  S
Sbjct: 465 -----AKRASLVQS 473

Length = 718

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 52/217 (23%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E RN++     R +  +F  L+  ++AG  + + G +G+GK++++ ++     P +G V
Sbjct: 2    LEARNLAC---ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV 58

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIY--------------ENIKY---GNED 1108
            L  G  IR              +Q        +Y              EN+++    +  
Sbjct: 59   LWQGEPIR--------------RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP 104

Query: 1109 ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL 1168
              +  L +A       GF           V  R  QLS GQ++RVA+AR  L    + +L
Sbjct: 105  GDDEALWEALAQVGLAGF---------EDVPVR--QLSAGQQRRVALARLWLTRAPLWIL 153

Query: 1169 DEATSALDTAS----ENLIQEALDKLMEGRTTIMVAH 1201
            DE  +A+D       E L+ +  ++   G   I+  H
Sbjct: 154  DEPFTAIDKQGVARLEALLAQHAEQ---GGMVILTTH 187

Length = 204

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 60.8 bits (148), Expect = 3e-09
 Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 43/236 (18%)

Query: 990  QPDDPASKE-VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS 1048
            +PD+P+++  +   +  I L N    Y  RP   I  NL+ +V+ G    +VG +G+GKS
Sbjct: 244  EPDEPSARHALPANEPRIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKS 300

Query: 1049 TVISLVMRFYDPISGTVLID---GY--DIRTLNLR---------SLRRKIGLVQQEPAL- 1093
            T++SL       I+G    D   GY  D+ TL  R          +++ IG V     L 
Sbjct: 301  TLLSL-------ITG----DHPQGYSNDL-TLFGRRRGSGETIWDIKKHIGYVSSSLHLD 348

Query: 1094 --FSTTIYENIKYGNEDASEIELMKATKAAN---AHGFISRMPEGYQSHVGDRGVQ-LSG 1147
               ST++   I  G  D+  I + +A        A  ++  +  G      D     LS 
Sbjct: 349  YRVSTSVRNVILSGFFDS--IGIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSW 404

Query: 1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIM-VAH 1201
            GQ++   I RA++K+P++L+LDE    LD  +  L++  +D L+ EG T ++ V+H
Sbjct: 405  GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460

Length = 490

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 60.0 bits (146), Expect = 5e-09
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 17/204 (8%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ-M 454
               +V  G+  A VG +G+GKST++ ++  +Y   +G IL  G ++     K  +E  +
Sbjct: 22  GAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81

Query: 455 GLVSQEPALFAT-SIANNILLGKEDASM------DRVIEAAKAANAHSFVEGLPDGYQTQ 507
           G++ QE  L    +IA NI LG+E  +        ++   A    A      L       
Sbjct: 82  GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARL---NLRFSSDKL 138

Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRALEKIMSNRTT 566
           VGE    LS G++Q + IA+ +    K++++DE T AL D E+E + +   E     R  
Sbjct: 139 VGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGI 194

Query: 567 IVVAHRLSTVRDV-DTIMVLKNGQ 589
           + ++HRL  + ++ D + V ++GQ
Sbjct: 195 VYISHRLKEIFEICDDVTVFRDGQ 218

Length = 501

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 59.0 bits (143), Expect = 5e-09
 Identities = 66/283 (23%), Positives = 118/283 (41%), Gaps = 64/283 (22%)

Query: 1006 IELRN--VSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV--------- 1054
            +++RN  + FK      +   + +++ ++ G    +VG+SGSGKS +   +         
Sbjct: 4    LDIRNLTIEFKTSDGW-VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWR 62

Query: 1055 -----MRFYDPISGTVLIDGYDIRTLNLRSLRRKIG----LVQQEP-------ALFSTTI 1098
                 MRF          D  D+  L+ R  R+ +G    ++ QEP             +
Sbjct: 63   VTADRMRF----------DDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQL 112

Query: 1099 YENI-----------KYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147
             +NI           ++G      IEL+      +    +   P            +L+ 
Sbjct: 113  MQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP-----------YELTE 161

Query: 1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLST 1205
            G+ Q+V IA A+   P +L+ DE T+A++  ++  I   L +L +    T ++++H L  
Sbjct: 162  GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM 221

Query: 1206 IRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ-LIRLQQD 1246
            +   ADKI VL  G+  E    ++L+   +  Y Q LIR   D
Sbjct: 222  LSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRAIPD 264

Length = 330

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 48/247 (19%)

Query: 389 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTII-SMVQRLYEP-------TSGKILLDGH 440
           R   +  +L+  ++ G+  A +G +G+GKST++ ++   L           +G + L+G 
Sbjct: 12  RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE 71

Query: 441 DLKSL---QLKWLREQMGLVSQEPALFATSIANNILLGK--------EDASMDRVIEAAK 489
            L ++   +L  LR  +   +Q PA FA S    +LLG+             D  I    
Sbjct: 72  PLAAIDAPRLARLRAVLPQAAQ-PA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA 129

Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV---------LRNPKILLLDE 540
            A A         G    VG   T LSGG+  R+  AR +          + P+ LLLDE
Sbjct: 130 LALA---------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180

Query: 541 ATSALDAESELIVQRALEKIMS-----NRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESG 594
            T+ALD   +    R L+ +       N   + + H  +   R  D I +L +G +V  G
Sbjct: 181 PTAALDLAHQ---HRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237

Query: 595 THVDLIS 601
              D+++
Sbjct: 238 APADVLT 244

Length = 272

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 59.8 bits (145), Expect = 6e-09
 Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 31/236 (13%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066
            E+RNV+       D     +++  V  G  L   G  GSG++ +++ +        G + 
Sbjct: 267  EVRNVT-----SRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR 321

Query: 1067 IDGYDIRTLN-LRSLRRKIGLV---QQEPALFST-TIYENIKYGNEDASEIELMKATKAA 1121
            ++G DI   + L ++++ +  +   +++   F   +I +N+            +K     
Sbjct: 322  LNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRS-------LKDGGYK 374

Query: 1122 NAHGFIS-----RMPEGYQ-------SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 1169
             A G        R  E  +         V     +LSGG +Q+V I++ +   P +++ D
Sbjct: 375  GAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434

Query: 1170 EATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNA-DKIAVLQQGKVAEI 1223
            E T  +D  ++  I + + +L  +G+  +MV+  L  I    D+IAV  +G++ +I
Sbjct: 435  EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490

Length = 510

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 48/246 (19%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVI-SLVMRFYDP-------ISGTVLIDGYDIR 1073
             I  +L+L++  GR  A++G++G+GKST++ +L              ++G V ++G  + 
Sbjct: 15   AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74

Query: 1074 TLNLRSL-RRKIGLVQQ-EPAL-FSTTIYENIKYGNEDASEIELMKATKAANAHGFISRM 1130
             ++   L R +  L Q  +PA  FS             A EI L+     A   G ++  
Sbjct: 75   AIDAPRLARLRAVLPQAAQPAFAFS-------------AREIVLLGRYPHARRAGALTHR 121

Query: 1131 PEGYQSH----------VGDRGVQLSGGQKQRVAIARAILK---------NPSILLLDEA 1171
                             VG     LSGG+  RV  AR + +          P  LLLDE 
Sbjct: 122  DGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEP 181

Query: 1172 TSALDTASENLIQEALDKLME----GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1227
            T+ALD A ++ + + + +L      G   I+    L+  R+AD+IA+L  G +   G+  
Sbjct: 182  TAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGAPA 240

Query: 1228 QLLRKE 1233
             +L   
Sbjct: 241  DVLTPA 246

Length = 272

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 59.5 bits (144), Expect = 1e-08
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 15/128 (11%)

Query: 474  LGKEDASM--DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR 531
            + KE+  M  D V+E  +  N    + GLP         G T LS  Q++R+ IA  ++ 
Sbjct: 986  VSKEEKMMFVDEVMELVELDNLKDAIVGLP---------GVTGLSTEQRKRLTIAVELVA 1036

Query: 532  NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLS--TVRDVDTIMVLK-N 587
            NP I+ +DE TS LDA +  IV R +   + + RT +   H+ S       D ++++K  
Sbjct: 1037 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096

Query: 588  GQVVESGT 595
            GQV+ SG 
Sbjct: 1097 GQVIYSGP 1104

Length = 1470

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 59.0 bits (143), Expect = 1e-08
 Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 22/190 (11%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084
            E+L+ +V +G +L + G +G GKS++  ++   +    G +               + K+
Sbjct: 469  ESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKL 517

Query: 1085 GLVQQEPALFSTTIYENIKY--GNED-----ASEIELMKATKAANAHGFISRMPEGYQSH 1137
              V Q P +   T+ + I Y   +ED      S+ +L +          + R  EG  S 
Sbjct: 518  FYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER--EGGWSA 575

Query: 1138 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTI 1197
            V D    LSGG+KQR+A+AR     P   +LDE TSA+    E  +     +   G T  
Sbjct: 576  VQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLF 633

Query: 1198 MVAHRLSTIR 1207
             V+HR S  +
Sbjct: 634  SVSHRKSLWK 643

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IEL N+S  Y  +    + ++++L ++ G  + +VG++G+GKST++ L+    +P  G V
Sbjct: 1    IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 46/260 (17%)

Query: 997  KEVT-EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 1055
             EV  E++    LR  S +           +++  +  G  L + G  G+ ++ ++  + 
Sbjct: 247  GEVILEVRNLTSLRQPSIR-----------DVSFDLHKGEILGIAGLVGAKRTDIVETLF 295

Query: 1056 RFYDPISGTVLIDGYDIRTLN-LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIEL 1114
               +  +GT+ + G  I   N   ++     LV +E    ST IY  +  G    S I  
Sbjct: 296  GIREKSAGTITLHGKKINNHNANEAINHGFALVTEERR--STGIYAYLDIGFN--SLISN 351

Query: 1115 MKATKAANAHGFIS--RMPE--------------GYQSHVGDRGVQLSGGQKQRVAIARA 1158
            ++  K  N  G +   RM                G+++ +G     LSGG +Q+V I R 
Sbjct: 352  IRNYK--NKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG----SLSGGNQQKVIIGRW 405

Query: 1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQ 1216
            +L  P IL+LDE T  +D  ++  I + + +L  + +  I+++  +  +    D+I V+ 
Sbjct: 406  LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMS 465

Query: 1217 QGKVAEI-----GSHEQLLR 1231
             G VA I      +  ++LR
Sbjct: 466  NGLVAGIVDTKTTTQNEILR 485

Length = 491

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 57.3 bits (139), Expect = 3e-08
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 42/196 (21%)

Query: 1034 GRSLAVVGQSGSGKSTVISLVM--------RFYDPISGTVLIDGY----------DIRTL 1075
            G+ + ++G +G GKST + ++         R+ DP S   +I  +           +   
Sbjct: 100  GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEG 159

Query: 1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
             LR++  K   V   P +    + E +K  +E     E+++     N             
Sbjct: 160  ELRAVH-KPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLEN------------- 205

Query: 1136 SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDT----ASENLIQEALDKL 1190
              V DR V +LSGG+ QRVAIA A+L++  +   DE +S LD      +  +I+E  +  
Sbjct: 206  --VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE-- 261

Query: 1191 MEGRTTIMVAHRLSTI 1206
             +G+  I+V H L+ +
Sbjct: 262  -DGKYVIVVEHDLAVL 276

Length = 591

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 41/251 (16%)

Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTV-ISLVMRF-YDPISGTVLIDGYDIRTLNL 1077
            D  I   LNL+V  G   A++G +GSGKST+  +L  R  Y+   GTV   G D+  L+ 
Sbjct: 13   DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP 72

Query: 1078 RSLRRK-IGLVQQEPA---------LFSTTIYENIKYGNEDA-----------SEIELMK 1116
                 + I +  Q P             T +     Y  ++             +I L+K
Sbjct: 73   EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK 132

Query: 1117 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
                         MPE   +   + G   SGG+K+R  I +  +  P + +LDE+ S LD
Sbjct: 133  -------------MPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLD 177

Query: 1177 TASENLIQEALDKLMEG-RTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
              +  ++ + ++ L +G R+ I+V H  R+      D + VL QG++ + G    + + E
Sbjct: 178  IDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLE 237

Query: 1234 NGIYKQLIRLQ 1244
               Y  L   Q
Sbjct: 238  EQGYGWLTEQQ 248

Length = 248

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 24/177 (13%)

Query: 1018 RPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 1077
            R +  +F  L+  V AG +L V G +G+GK+T++ ++       SG + IDG      + 
Sbjct: 21   RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD- 79

Query: 1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGF-ISRMPEGYQS 1136
            RS  R +  +   P L              D S +E +        HG    +MP    +
Sbjct: 80   RS--RFMAYLGHLPGL------------KADLSTLENLHFLCG--LHGRRAKQMPGSALA 123

Query: 1137 HVGDRGV------QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1187
             VG  G       QLS GQK+R+A+AR  L    + LLDE  + LD     L+   +
Sbjct: 124  IVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180

Length = 214

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 53.9 bits (129), Expect = 3e-08
 Identities = 42/182 (23%), Positives = 59/182 (32%), Gaps = 61/182 (33%)

Query: 1034 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTV-LIDGYDIRTLNLRSLRRKIGLVQQEPA 1092
            G  + +VG  GSGK+T+   + R   P  G V  IDG DI    L  L   I        
Sbjct: 2    GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53

Query: 1093 LFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 1152
                                                         VG +    SG  + R
Sbjct: 54   ---------------------------------------------VGGKKASGSGELRLR 68

Query: 1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALD-------KLMEGRTTIMVAHRLST 1205
            +A+A A    P +L+LDE TS LD   E L+    +       K  +  T I+  +    
Sbjct: 69   LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128

Query: 1206 IR 1207
            + 
Sbjct: 129  LG 130

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 56.9 bits (138), Expect = 4e-08
 Identities = 53/227 (23%), Positives = 110/227 (48%), Gaps = 17/227 (7%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS-TVISLVMRFYDPISGTV 1065
            E+RN++   PV P I   ++++  +  G  L + G  G+G++  V  L   +     G +
Sbjct: 261  EVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI 320

Query: 1066 LIDGYDIRTLNLR-SLRRKIGLVQQE-------PALFSTTIYENIKYGNED--ASEIELM 1115
             IDG  ++  N + ++ + I +V ++       P +    + +NI     D       + 
Sbjct: 321  FIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGGSRID 377

Query: 1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
             A +       I R+ +   +       +LSGG +Q+  +A+ +L NP IL+LDE T  +
Sbjct: 378  DAAELKTILESIQRL-KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGI 436

Query: 1176 DTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220
            D  ++  I + +++L+ +G   I+++  L  +   +D++ V+ +GK+
Sbjct: 437  DVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483

Length = 506

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 44/195 (22%)

Query: 1034 GRSLAVVGQSGSGKSTVISLVM--------RFYDPISGTVLIDGY----------DIRTL 1075
            G+ L +VG +G GKST + ++         +F DP     ++D +           +   
Sbjct: 26   GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85

Query: 1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
            +++ +  K   V   P      + E +K  +E     EL+   +                
Sbjct: 86   DVKVIV-KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL--------------- 129

Query: 1136 SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALD-----TASENLIQEALDK 1189
             HV DR + QLSGG+ QRVAIA A+ ++      DE +S LD      A+  LI+E  + 
Sbjct: 130  RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR-LIRELAE- 187

Query: 1190 LMEGRTTIMVAHRLS 1204
              +    ++V H L+
Sbjct: 188  --DDNYVLVVEHDLA 200

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 56.3 bits (136), Expect = 6e-08
 Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 37/219 (16%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK-SLQLKWLREQ 453
            +++F +  G+     G  G+ ++ I+  +  + E ++G I L G  +      + +   
Sbjct: 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324

Query: 454 MGLVSQE---PALFA------TSIANNI--------LLGKEDASMDR--VIEAAKAANAH 494
             LV++E     ++A       S+ +NI        LL       D   VI++ +     
Sbjct: 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP- 383

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD--AESELI 552
                   G++TQ+G     LSGG +Q++ I R +L  P+IL+LDE T  +D  A+ E I
Sbjct: 384 --------GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE-I 430

Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQV 590
            Q   E    ++  I+++  +  +  + D I+V+ NG V
Sbjct: 431 YQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469

Length = 491

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 56.7 bits (137), Expect = 6e-08
 Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 35/211 (16%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ--------RLY 428
           I+F  +    P+   ++ E+L+F V +G      GP+G GKS++  ++         RL 
Sbjct: 452 IKFENIPLVTPNGDVLI-ESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLT 510

Query: 429 EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAA 488
           +P  GK+         + L  LR+Q+        ++  S  +    G  D  ++++++  
Sbjct: 511 KPAKGKLFYVPQR-PYMTLGTLRDQI--------IYPDSSEDMKRRGLSDKDLEQILDNV 561

Query: 489 KAANAHSFVEGLPDGYQTQVGEGGTQ-----LSGGQKQRIAIARAVLRNPKILLLDEATS 543
           +          L    + + G    Q     LSGG+KQRIA+AR     P+  +LDE TS
Sbjct: 562 Q----------LTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611

Query: 544 ALDAESELIVQRALEKIMSNRTTIVVAHRLS 574
           A+  + E  + R   +     T   V+HR S
Sbjct: 612 AVSVDVEGYMYRLCREF--GITLFSVSHRKS 640

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHR 572
           LSGG+ QR+AIA A+LRN    L DE ++ LD E  L   RA+ ++     +T +VV H 
Sbjct: 72  LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131

Query: 573 LSTVRDVDTIMVLKNGQ 589
           L+ +  +   + +  G+
Sbjct: 132 LAVLDYLSDRIHVFEGE 148

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 56.3 bits (136), Expect = 7e-08
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 26/222 (11%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           +N+N  V      A +G +G+GKST++  +  +Y+  SG IL  G   K +  K  +E +
Sbjct: 15  DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG---KEIDFKSSKEAL 71

Query: 455 ----GLVSQEPALF-ATSIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGY 504
                +V QE  L    S+ +N+ LG+          D++    KA      ++  P   
Sbjct: 72  ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR-- 129

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564
                     LS  Q Q I IA+A   N KI+++DE TS+L  +    +   + K+    
Sbjct: 130 -----AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG 184

Query: 565 TTIV-VAHRLSTVRDV-DTIMVLKNGQVVE----SGTHVDLI 600
             IV ++H++  +  + D I +L++GQ +     +G  +D I
Sbjct: 185 CGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKI 226

Length = 491

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 55.9 bits (135), Expect = 8e-08
 Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 18/222 (8%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK-SLQLKWLREQM 454
           +++FSV  G+   F G  GSG++ +++ +  + +   G+I L+G D+     L  +++ M
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340

Query: 455 GLVSQ---EPALFAT-SIANNIL------LGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
             +++   +   F   SIA N+        G    +M    E  +   A +  E L    
Sbjct: 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400

Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD--AESELI-VQRALEKIM 561
            + V +  T+LSGG +Q++ I++ +   P++++ DE T  +D  A++E+  V R L    
Sbjct: 401 HS-VNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-- 457

Query: 562 SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
             +  ++V+  L  +  V D I V   G++ +  T+ D +S+
Sbjct: 458 DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSE 499

Length = 510

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 53.8 bits (129), Expect = 8e-08
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 23/192 (11%)

Query: 381 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 440
           E+ F Y  +P  + + ++F + AG      G +G+GK+T++ ++  L  P  G+IL +  
Sbjct: 6   ELDFDYHDQP--LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ 63

Query: 441 DLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 500
            +K   L   ++Q+  V        + I   + L +E+   D +  +  A          
Sbjct: 64  SIKK-DLCTYQKQLCFVGHR-----SGINPYLTL-RENCLYD-IHFSPGAVGITELCRLF 115

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
              +      G   LS GQK+++A+ R  +   K+ LLDE   ALD       + +L  I
Sbjct: 116 SLEHLIDYPCG--LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD-------ELSLLTI 166

Query: 561 MSNRTTIVVAHR 572
           ++     +  HR
Sbjct: 167 ITK----IQEHR 174

Length = 200

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 52.1 bits (126), Expect = 9e-08
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   +   Y  +   + ++++ +++ G     VG +G+GKST++ ++    EP  G + 
Sbjct: 1   IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58

Query: 437 LD 438
             
Sbjct: 59  WG 60

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 56.0 bits (136), Expect = 9e-08
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573
           +LSGG+ QR+AIA A+LR+      DE TS LD    L V R + ++   +  +VV H L
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271

Query: 574 STVRD--VDTIMVL 585
             V D   D + + 
Sbjct: 272 -AVLDYLADNVHIA 284

Length = 590

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 56.0 bits (136), Expect = 1e-07
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 53/201 (26%)

Query: 1031 VSAGRSLAVVGQSGSGKSTVISL--------------------VMRFYDPISGTVLIDGY 1070
               G+   ++G +G GK+T + +                    V++ +    GT L + Y
Sbjct: 96   PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRF---RGTELQN-Y 151

Query: 1071 --DIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFIS 1128
               +    ++ +  K   V   P +F   + E +K  +E     E+++            
Sbjct: 152  FKKLYNGEIKVVH-KPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGL-------- 202

Query: 1129 RMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALD-----TASENL 1182
                    ++ DR + +LSGG+ QRVAIA A+L++      DE TS LD       +  L
Sbjct: 203  -------ENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVA-RL 254

Query: 1183 IQEALDKLMEGRTTIMVAHRL 1203
            I+E    L EG+  ++V H L
Sbjct: 255  IRE----LAEGKYVLVVEHDL 271

Length = 590

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT--IVVAH 571
           +L+ G+ Q++ IA A+   P++L+ DE T++++  ++  + R L ++  N  T  ++++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217

Query: 572 RLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601
            L  +    D I VL  GQ VES    +L++
Sbjct: 218 DLQMISQWADKINVLYCGQTVESAPSEELVT 248

Length = 330

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 54.3 bits (131), Expect = 3e-07
 Identities = 62/216 (28%), Positives = 112/216 (51%), Gaps = 21/216 (9%)

Query: 369 TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ--- 425
            LP    +I  +    +Y  RP  +  NL++ V+ G+ +  VGP+G+GKST++S++    
Sbjct: 253 ALPANEPRIVLNNGVVSYNDRP--ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH 310

Query: 426 -RLYEPTSGKILLDGHDLKSLQLKW-LREQMGLVSQEPAL---FATSIANNILLGKEDA- 479
            + Y   S  + L G    S +  W +++ +G VS    L    +TS+ N IL G  D+ 
Sbjct: 311 PQGY---SNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI 367

Query: 480 SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ-LSGGQKQRIA-IARAVLRNPKILL 537
            + + +   +   A  +++ L  G   +  +     LS GQ QR+A I RA++++P +L+
Sbjct: 368 GIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLI 424

Query: 538 LDEATSALDAESELIVQRALEKIMSNRTT--IVVAH 571
           LDE    LD  +  +V+R ++ ++S   T  + V+H
Sbjct: 425 LDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460

Length = 490

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI-MSNRTTI-VVAH 571
           +L+ G+ Q++ IA A+   P++L+ DE T+A++  ++  + R L ++  +N TTI +++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217

Query: 572 RLSTVRD-VDTIMVLKNGQVVESGTHVDLIS 601
            L  +    D I VL  GQ VE+    +L++
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVT 248

Length = 330

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 61/232 (26%), Positives = 106/232 (45%), Gaps = 47/232 (20%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084
            ++++LK   G  + +VG +GSGKST+ +++     P  G V  +G ++  + + +     
Sbjct: 41   DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAISA----- 94

Query: 1085 GLVQQEPALFSTTIYENIKYGNEDASEIELM----KATKAANAHGFISRMPEGYQ-SHVG 1139
            GL  Q       T  ENI++      ++  M    K  KA          P+  + S +G
Sbjct: 95   GLSGQ------LTGIENIEF------KMLCMGFKRKEIKAM--------TPKIIEFSELG 134

Query: 1140 DRGVQ----LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--- 1192
            +   Q     S G + ++  +  I  NP IL++DEA S  D   +   Q+ LDK+ E   
Sbjct: 135  EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKE 191

Query: 1193 -GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1242
              +T   V+H L  +R    KIA ++ GK+ + G  + +L K    Y+  + 
Sbjct: 192  QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK----YEAFLN 239

Length = 264

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 52.3 bits (126), Expect = 1e-06
 Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 19/233 (8%)

Query: 1028 NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLV 1087
            +L ++AG S A VG +GSGKS +   +      +SG        I  L+   L++   LV
Sbjct: 23   SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK---LV 79

Query: 1088 QQEPALFSTTIYENIKYGNED----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 1143
              E   +     + +  G +D     +EI   +    A       +   G  + +  R  
Sbjct: 80   SDE---WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQF--GITALLDRRFK 134

Query: 1144 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHR 1202
             LS G+ ++  + +A++  P +L+LDE    LD AS   + E L  L   G T ++V +R
Sbjct: 135  YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194

Query: 1203 LSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN---PEA 1251
               I +      VL    +AE G  E++L++   +  QL   +Q +    PE 
Sbjct: 195  FDEIPDFVQFAGVLADCTLAETGEREEILQQ--ALVAQLAHSEQLEGVQLPEP 245

Length = 490

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 51.9 bits (125), Expect = 2e-06
 Identities = 67/301 (22%), Positives = 122/301 (40%), Gaps = 78/301 (25%)

Query: 344 AAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPH----MVFE---- 395
            A ++ I +I++  H   RP   G+T   +   +   E+   YP  PH    ++ E    
Sbjct: 207 KAISDTICVIRDGRHIGTRPAA-GMTEDDIITMMVGRELTALYPREPHTIGEVILEVRNL 265

Query: 396 --------------NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP----TSGKILL 437
                         +++FS+  G+     G  G+G++    +VQ L+        G+I +
Sbjct: 266 TAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRT---ELVQCLFGAYPGRWEGEIFI 322

Query: 438 DGHDLK-SLQLKWLREQMGLVSQE-------PALFATSIANNILL--------------G 475
           DG  +K     + + + + +V ++       P +    +  NI L               
Sbjct: 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGGSRIDDA 379

Query: 476 KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI 535
            E  ++   I+  K   A      L             +LSGG +Q+  +A+ +L NPKI
Sbjct: 380 AELKTILESIQRLKVKTASPE---LAIA----------RLSGGNQQKAVLAKCLLLNPKI 426

Query: 536 LLLDEATSALD--AESE---LIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQ 589
           L+LDE T  +D  A+ E   LI Q   + +      IV++  L  V  + D ++V+  G+
Sbjct: 427 LILDEPTRGIDVGAKYEIYKLINQLVQQGV----AIIVISSELPEVLGLSDRVLVMHEGK 482

Query: 590 V 590
           +
Sbjct: 483 L 483

Length = 506

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 52.1 bits (125), Expect = 2e-06
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 51/217 (23%)

Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS 1079
            D  I +++ L +  G  + ++G++G+GKST+I L+     P+SG                
Sbjct: 324  DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG---------------- 367

Query: 1080 LRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE------- 1132
               +IGL +             IK G     ++E ++A ++   H  ++R+         
Sbjct: 368  ---EIGLAK------------GIKLGYFAQHQLEFLRADESPLQH--LARLAPQELEQKL 410

Query: 1133 -------GYQ-SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
                   G+Q   V +   + SGG+K R+ +A  + + P++LLLDE T+ LD      + 
Sbjct: 411  RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470

Query: 1185 EALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220
            EAL    EG   ++V+H    +R+  D + ++  GKV
Sbjct: 471  EALIDF-EG-ALVVVSHDRHLLRSTTDDLYLVHDGKV 505

Length = 638

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 51.8 bits (124), Expect = 2e-06
 Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 35/236 (14%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL 450
           H    N++F V  G+    +G +GSGKST+ +++  +  P  G + + G           
Sbjct: 37  HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG----------- 85

Query: 451 REQMGLVSQEPALFATSIA-NNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
                      AL A S   N  L G E+  +  ++           +  + +     +G
Sbjct: 86  ---------SAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF--ADIG 134

Query: 510 EGGTQ----LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI----M 561
           +   Q     S G K R+  A +V  NP IL++DEA S  D   +   ++ L+K+     
Sbjct: 135 KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKE 191

Query: 562 SNRTTIVVAHRLSTVRDVDTIMV-LKNGQVVESGTHVDLISKGGEYAALVNLQSSE 616
             +T   ++H LS V+   T  + L  GQV E G   +++    E+    N  S E
Sbjct: 192 QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSVE 247

Length = 549

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 51.8 bits (124), Expect = 2e-06
 Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 46/233 (19%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085
            N++ +V  G  + ++G +GSGKST+ +L+     P  GTV I G    +  L ++    G
Sbjct: 42   NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG----SAALIAISS--G 95

Query: 1086 LVQQEPALFSTTIYENIKYG-------NEDASEIELMKATKAANAHGFISRMPEGYQSHV 1138
            L  Q   +      ENI+          E   EI + +  + A+   FI +  + Y S  
Sbjct: 96   LNGQLTGI------ENIELKGLMMGLTKEKIKEI-IPEIIEFADIGKFIYQPVKTYSS-- 146

Query: 1139 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME----GR 1194
                     G K R+  A ++  NP IL++DEA S  D   +   ++ LDK+ E    G+
Sbjct: 147  ---------GMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKEQGK 194

Query: 1195 TTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS-------HEQLLRKENGIYKQ 1239
            T   ++H LS +++   K   L  G+V E G        +++ L+K N +  +
Sbjct: 195  TIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMSVE 247

Length = 549

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 52.0 bits (125), Expect = 2e-06
 Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 52/249 (20%)

Query: 1000 TEIKGNI-ELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVIS-LVMR 1056
             E   +I   RN++++  ++     I  N++  V  G   A++G SG+GK+T+++ L  R
Sbjct: 753  KESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER 812

Query: 1057 FYDPISGTVLIDGYDIRTLNLR----SLRRKIGLVQQ-----------EPALFST----- 1096
                ++  V+  G   R +N R    S +R IG VQQ           E   FS      
Sbjct: 813  ----VTTGVITGG--DRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQP 866

Query: 1097 ---TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153
               +  E ++Y  E    I+L++    A+A              VG  G  L+  Q++R+
Sbjct: 867  KSVSKSEKMEYVEE---VIKLLEMESYADAV-------------VGVPGEGLNVEQRKRL 910

Query: 1154 AIARAILKNPSILL-LDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRNA-- 1209
             I   ++  P +LL LDE TS LD+ +   I + + KL + G+  +   H+ S I     
Sbjct: 911  TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEF 970

Query: 1210 DKIAVLQQG 1218
            D++ +LQ+G
Sbjct: 971  DRLLLLQKG 979

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 51.1 bits (123), Expect = 3e-06
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RTTIVVAHR 572
           +LSGG+ QR+AIA A+LR+  +   DE +S LD    L   R + ++  + +  IVV H 
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272

Query: 573 LST 575
           L+ 
Sbjct: 273 LAV 275

Length = 591

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHR 572
           QLSGG+ QR+AIA A+ R+      DE +S LD +  L   R + ++   +   +VV H 
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198

Query: 573 LS 574
           L+
Sbjct: 199 LA 200

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 1143 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVA 1200
            + LSGG+ QRVAIA A+L+N +  L DE ++ LD         A+ +L E   +T ++V 
Sbjct: 70   IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129

Query: 1201 HRLSTIRN-ADKIAVLQ 1216
            H L+ +   +D+I V +
Sbjct: 130  HDLAVLDYLSDRIHVFE 146

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 1145 LSGGQKQRVAIARAILKNP--SILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAH 1201
            LSGG+ QRV +A  +   P  ++ +LDE ++ L     N + E +  L+  G T I++ H
Sbjct: 88   LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147

Query: 1202 RLSTIRNADKI 1212
             L  + +AD I
Sbjct: 148  NLDVLSSADWI 158

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 50.4 bits (121), Expect = 5e-06
 Identities = 49/219 (22%), Positives = 98/219 (44%), Gaps = 36/219 (16%)

Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083
            F N++L+V AG  L + G  G+G++ +   +        G ++++G +I  L+    R  
Sbjct: 279  FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ-RLA 337

Query: 1084 IGLV-----QQEPALF-STTIYENIKYGNEDASEIELMKATKAANAHGFI------SRMP 1131
             GLV     +Q   L+    +  N+                   N  GF       + + 
Sbjct: 338  RGLVYLPEDRQSSGLYLDAPLAWNV--------------CALTHNRRGFWIKPARENAVL 383

Query: 1132 EGYQSHVG------DRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
            E Y+  +       ++  + LSGG +Q+V IA+ +  +P +L++DE T  +D ++ N I 
Sbjct: 384  ERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY 443

Query: 1185 EALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1221
            + +  +       + ++  L  I   AD++ V+ QG+++
Sbjct: 444  QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482

Length = 510

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 50.0 bits (120), Expect = 7e-06
 Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 46/178 (25%)

Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
           F N++  V AG+     G  G+G++ +   +  L     G+I+L+G ++ +L     R  
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA-QRLA 337

Query: 454 MGLV-----SQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLP------- 501
            GLV      Q   L+                    ++A  A N  +             
Sbjct: 338 RGLVYLPEDRQSSGLY--------------------LDAPLAWNVCALTHNRRGFWIKPA 377

Query: 502 ------DGYQTQVG---EGGTQ----LSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
                 + Y+  +        Q    LSGG +Q++ IA+ +  +P++L++DE T  +D
Sbjct: 378 RENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435

Length = 510

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 28/178 (15%)

Query: 1029 LKVSAG-----RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083
            L+V  G       + ++G +G GK+T I ++     P  G + I+   +      S +  
Sbjct: 15   LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV------SYKP- 67

Query: 1084 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 1143
                Q   A +  T+ + +    +D       K T+ A        +         DR V
Sbjct: 68   ----QYIKADYEGTVRDLLSSITKDFYTHPYFK-TEIAKPLQIEQIL---------DREV 113

Query: 1144 -QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-MEGRTTIMV 1199
             +LSGG+ QRVAIA  + K+  I LLDE ++ LD     +  + + +       T  V
Sbjct: 114  PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFV 171

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 24/207 (11%)

Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069
             + F Y  +P   + + ++  + AG  L + G +G+GK+T++ L+    +P  G +L + 
Sbjct: 6    ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62

Query: 1070 YDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYG---NEDASEI-ELMKATKAANAH 1124
              I+  +L + ++++  V     +    T+ EN  Y    +  A  I EL +     +  
Sbjct: 63   QSIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI 121

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS-ENLI 1183
             +    P G           LS GQK++VA+ R  +    + LLDE   ALD  S   +I
Sbjct: 122  DY----PCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167

Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNAD 1210
             +  +   +G   ++ +H+   +  AD
Sbjct: 168  TKIQEHRAKGGAVLLTSHQDLPLNKAD 194

Length = 200

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 49.6 bits (119), Expect = 9e-06
 Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 12/110 (10%)

Query: 1145 LSGGQKQRVAIARAILKNPSILLLDEATSALD-TASENLIQEALDKLMEGRTTIMVAHRL 1203
            LSGG  ++ A+ RA++ NP +LLLDE T+ LD    E L  E   K  +G + I ++H  
Sbjct: 157  LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWL--EGFLKTFQG-SIIFISHDR 213

Query: 1204 STIRN-ADKIAVLQQGKVAEI-GSHEQ-LLRKENGIYKQLIRLQQDKNPE 1250
            S IRN A +I  L +GK+    G+++Q LL KE     + +R+++ +N E
Sbjct: 214  SFIRNMATRIVDLDRGKLVSYPGNYDQYLLEKE-----EALRVEELQNAE 258

Length = 635

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 49.1 bits (118), Expect = 1e-05
 Identities = 54/227 (23%), Positives = 105/227 (46%), Gaps = 37/227 (16%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084
            E ++  V AG  + + G  G+G+S ++ L+       +G V +DG   + +++RS R  I
Sbjct: 270  EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG---KPIDIRSPRDAI 326

Query: 1085 --GLV------QQEPALFSTTIYENI---------KYGNEDASEIELMKATKAANAHGFI 1127
              G++      + E  +   ++ +NI         + G        +    +A NA  FI
Sbjct: 327  RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCL------INNRWEAENADRFI 380

Query: 1128 SRM----PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
              +    P   Q  +      LSGG +Q+  + R + ++  ++LLDE T  +D  +++ I
Sbjct: 381  RSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEI 435

Query: 1184 QEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228
               + +L   G   + V+  L  +   AD+I V+++G++A   + EQ
Sbjct: 436  YNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482

Length = 501

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 49.5 bits (119), Expect = 1e-05
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 340 AKGKAAAANIISIIKENSHSSERPGDDGITLP---KLAGQ-IEFSEVCFAYPSRPHMVFE 395
           AK KA  A    ++ +     +R     I +P   +L  + IE   +   +  +  ++ +
Sbjct: 284 AKSKARLARYEELLSQEF--QKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK--LLID 339

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           +L+F +  G     +GP+G+GKST+  M+    +P SG I
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 49.2 bits (118), Expect = 1e-05
 Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 7/93 (7%)

Query: 1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-MEGRTTIMVAHRL 1203
            LSGG +Q+VAIAR ++  P +L+LDE T  +D  ++  I + +++   EG + I+V+  +
Sbjct: 396  LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM 455

Query: 1204 STIRN-ADKIAVLQQGKV-----AEIGSHEQLL 1230
              +   +D+I V+ +G++      E  + E+L+
Sbjct: 456  PEVLGMSDRILVMHEGRISGEFTREQATQEKLM 488

Length = 501

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 49.9 bits (120), Expect = 1e-05
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 1145 LSGGQKQRVAIARAILK---NPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVA 1200
            LSGG+ QRV +A+ + K     ++ +LDE T+ L       + E L +L++ G T I++ 
Sbjct: 823  LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882

Query: 1201 HRLSTIRNADKI 1212
            H L  I+ AD I
Sbjct: 883  HNLDVIKTADWI 894

Length = 935

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 1145 LSGGQKQRVAIARAILK---NPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVA 1200
            LSGG+ QR+ +A+ + K     ++ +LDE T+ L       + E L +L++ G T +++ 
Sbjct: 170  LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229

Query: 1201 HRLSTIRNADKI 1212
            H L  I+ AD I
Sbjct: 230  HNLDVIKCADWI 241

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 48.7 bits (117), Expect = 1e-05
 Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 3/60 (5%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+ N++  +   P   +F+NLNL + AG  LA++G++G GK+T++  ++   +P SGTV
Sbjct: 320  LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376

Length = 530

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 48.6 bits (117), Expect = 2e-05
 Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 42/195 (21%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE  N+S  +    D  + ++L+  +  G  + ++G +G+GKST+  ++     P SGT+
Sbjct: 325  IEAENLSKSFG---DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQ-----EPALFSTTIYENIKYGNEDASEIELMKATKA 1120
             I G  +          K+  V Q     +P   + T++E I  G +    I++      
Sbjct: 382  KI-GETV----------KLAYVDQSRDALDP---NKTVWEEISGGLD---IIKVGNRE-- 422

Query: 1121 ANAHGFISRMPEGY-----QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
              +  ++ R    +     Q  VG     LSGG++ R+ +A+ + +  ++LLLDE T+ L
Sbjct: 423  IPSRAYVGRF--NFKGGDQQKKVG----VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL 476

Query: 1176 DTASENL--IQEALD 1188
            D   E L  ++EAL 
Sbjct: 477  DV--ETLRALEEALL 489

Length = 556

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 1140 DRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR--TT 1196
            +R V  LSGG+ QRVAIA A+ +   + LLDE ++ LD     ++ + + + +E    T 
Sbjct: 450  ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509

Query: 1197 IMVAHRLSTIRN-ADKIAVLQ 1216
            ++V H +  I   +D++ V +
Sbjct: 510  LVVDHDIYMIDYVSDRLIVFE 530

Length = 591

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 44/230 (19%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           ++++     G     VG +GSGKST+ +++     PT GK+  +G      ++  +    
Sbjct: 41  DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------EVSVIAISA 94

Query: 455 GLVSQEPALFATSIAN----NILLG---KE-DASMDRVIEAAKAANAHSFVEGLPDGYQT 506
           GL  Q      T I N     + +G   KE  A   ++IE ++      F+      YQ 
Sbjct: 95  GLSGQ-----LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGE---FI------YQP 140

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM----S 562
                  + S G + ++  +  +  NP IL++DEA S  D   +   Q+ L+KI      
Sbjct: 141 V-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQ 192

Query: 563 NRTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGTHVDLISKGGEYAALVN 611
           N+T   V+H L  VR   T I  ++ G++ + G   D++ K   Y A +N
Sbjct: 193 NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK---YEAFLN 239

Length = 264

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 48.6 bits (116), Expect = 2e-05
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 31/205 (15%)

Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-LLDGHDLKSL---QL 447
           ++ +++  ++  G     +G +G+GKST+I ++     P SG+I L  G  L      QL
Sbjct: 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL 385

Query: 448 KWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ-T 506
           ++LR      + E  L                 + R+           ++ G   G+Q  
Sbjct: 386 EFLR------ADESPL---------------QHLARLAPQELEQKLRDYLGGF--GFQGD 422

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTT 566
           +V E   + SGG+K R+ +A  V + P +LLLDE T+ LD +    +  AL  I      
Sbjct: 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGAL 480

Query: 567 IVVAHRLSTVRD-VDTIMVLKNGQV 590
           +VV+H    +R   D + ++ +G+V
Sbjct: 481 VVVSHDRHLLRSTTDDLYLVHDGKV 505

Length = 638

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 48.5 bits (115), Expect = 3e-05
 Identities = 51/245 (20%), Positives = 103/245 (42%), Gaps = 35/245 (14%)

Query: 377  IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
            +  +E+   Y        + L   V  G+ F  +G +G+GK+T   M+      TSG   
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997

Query: 437  LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
            + G  + +  +  + + MG   Q  A+      +++L G+E   +            ++ 
Sbjct: 1998 VAGKSILT-NISDVHQNMGYCPQFDAI------DDLLTGREHLYL------------YAR 2038

Query: 497  VEGLPDGYQTQVGEGGTQ--------------LSGGQKQRIAIARAVLRNPKILLLDEAT 542
            + G+P     +V     Q               SGG K++++ A A++  P ++LLDE T
Sbjct: 2039 LRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPT 2098

Query: 543  SALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDT-IMVLKNGQVVESGTHVDLI 600
            + +D ++  ++   +  I+   R  ++ +H +     + T + ++  G     GT   L 
Sbjct: 2099 TGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLK 2158

Query: 601  SKGGE 605
            SK G+
Sbjct: 2159 SKFGD 2163

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 28/196 (14%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           +N   +++ G+    VG +G GKST++++++       G     G    + QL W+ ++ 
Sbjct: 18  DNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAWVNQET 73

Query: 455 GLVSQEPAL--------------FATSIANNILLGKEDASMDRVIEAAKA----ANAHSF 496
             + Q PAL                   AN    G   A++   ++A  A    + A S 
Sbjct: 74  PALPQ-PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132

Query: 497 VEGLPDGY-QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
           + GL  G+   Q+    +  SGG + R+ +A+A++    +LLLDE T+ LD ++ + +++
Sbjct: 133 LHGL--GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEK 190

Query: 556 ALEKIMSNRTTIVVAH 571
            L+      T I+++H
Sbjct: 191 WLKSY--QGTLILISH 204

Length = 638

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 47.6 bits (114), Expect = 4e-05
 Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 54/213 (25%)

Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
           FEN++     G  +  +G +G GKST + ++    EP++G + LD +           E+
Sbjct: 17  FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ER 65

Query: 454 MGLVSQEPALFA---TSIANNILLGKED-----ASMDRVI---EAA-----KAANAHS-F 496
           +G + Q+   FA    ++ + +++G  +        DR+    E +     K A+    F
Sbjct: 66  LGKLRQDQ--FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKF 123

Query: 497 VEGLPDGYQTQ---------VGEGGTQLSG-------GQKQRIAIARAVLRNPKILLLDE 540
            E   DGY  +         VG    Q  G       G K R+ +A+A+  NP ILLLDE
Sbjct: 124 AE--MDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDE 181

Query: 541 ATSALDAESELIVQRALEKIMSNR--TTIVVAH 571
            T+ LD  +  I  R LE +++ R  T I+++H
Sbjct: 182 PTNNLDINT--I--RWLEDVLNERNSTMIIISH 210

Length = 530

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 47.1 bits (113), Expect = 5e-05
 Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 54/208 (25%)

Query: 1019 PDITI-FENLNLKVSAG---RS--LAVVGQSGSGKSTVISLVMRFYDPISGTVLID---- 1068
            PD+T    + +L+V  G       + +VG +G GK+T   L+     P  G V  +    
Sbjct: 344  PDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS 403

Query: 1069 --------GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKA 1120
                     YD     +  L R I           ++ Y++           E++K  + 
Sbjct: 404  YKPQYIKPDYDGT---VEDLLRSI------TDDLGSSYYKS-----------EIIKPLQ- 442

Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
                  + R+      +V D    LSGG+ QRVAIA  + ++  + LLDE ++ LD    
Sbjct: 443  ------LERL---LDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR 489

Query: 1181 NLIQEALDKLMEGR--TTIMVAHRLSTI 1206
              + +A+ ++ E R  T ++V H +  I
Sbjct: 490  LAVAKAIRRIAEEREATALVVDHDIYMI 517

Length = 590

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 47.3 bits (113), Expect = 5e-05
 Identities = 56/242 (23%), Positives = 98/242 (40%), Gaps = 44/242 (18%)

Query: 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK-ILLDGHDLKSLQ---------- 446
           + +++AG ++AFVG +GSGKS   ++ + L    +G+  LL G                 
Sbjct: 23  SLTLNAGDSWAFVGANGSGKS---ALARAL----AGELPLLSGERQSQFSHITRLSFEQL 75

Query: 447 -----LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLP 501
                 +W R    ++S        + A  I    +D    R  + A+      F     
Sbjct: 76  QKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDP--ARCEQLAQ-----QF----- 123

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
            G    +      LS G+ ++  + +A++  P +L+LDE    LD  S   +   L  + 
Sbjct: 124 -GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH 182

Query: 562 SNRTTIV-VAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEYAALV-NLQSSEHL 618
            +  T+V V +R   + D V    VL +  + E+G   +++ +     ALV  L  SE L
Sbjct: 183 QSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ-----ALVAQLAHSEQL 237

Query: 619 SN 620
             
Sbjct: 238 EG 239

Length = 490

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 47.4 bits (113), Expect = 5e-05
 Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 31/213 (14%)

Query: 401 VDAGKTFAFVGPSGSGKSTIIS-MVQRLYEP--TSGKILLDGHDLKSLQLKWLREQMGLV 457
           V  G   A +G SG+GK+T+++ + +R+     T G  L++G  L S      +  +G V
Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS----FQRSIGYV 841

Query: 458 SQEPALFATSIANNIL-----------LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT 506
            Q+     TS     L           + K +  M+ V E  K     S+ + +      
Sbjct: 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSE-KMEYVEEVIKLLEMESYADAV------ 894

Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILL-LDEATSALDAESELIVQRALEKIMSNRT 565
            VG  G  L+  Q++R+ I   ++  PK+LL LDE TS LD+++   + + + K+  +  
Sbjct: 895 -VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQ 953

Query: 566 TIVVA-HRLSTV--RDVDTIMVL-KNGQVVESG 594
            I+   H+ S +   + D +++L K GQ V  G
Sbjct: 954 AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 47.3 bits (113), Expect = 6e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 1145 LSGGQKQRVAIARAILK---NPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVA 1200
            LSGG+ QR+ +A+ + K     ++ +LDE T+ L       + E L +L++ G T +++ 
Sbjct: 830  LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889

Query: 1201 HRLSTIRNADKIAVL------QQGKVAEIGSHEQL 1229
            H L  I+ AD I  L        G V   G+ E++
Sbjct: 890  HNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEV 924

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 47.0 bits (112), Expect = 7e-05
 Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 42/227 (18%)

Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKST----VISLVMRFYDPISGTVLIDGY---DIRT 1074
             I + ++  +  G    V+G+ GSG ST    + S    F+  + G +  DG    +I+ 
Sbjct: 75   DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK- 133

Query: 1075 LNLRSLRRKIGLV----QQEPALFSTTIYENIKY-------GNEDASEIELMKATKAANA 1123
                  +   G V    + +      T+ E + +        N          A   A+ 
Sbjct: 134  ------KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV 187

Query: 1124 HGFISRMPEGYQSHVGD---RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD--TA 1178
            +     +     + VG+   RGV  SGG+++RV+IA A L    I   D AT  LD  TA
Sbjct: 188  YMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA 245

Query: 1179 SE--NLIQEALDKLMEGRTTIMVAHRLSTIRNA----DKIAVLQQGK 1219
             E    ++ + + L    TT +VA      ++A    DK+ VL +G 
Sbjct: 246  LEFIRALKTSANIL---DTTPLVA-IYQCSQDAYELFDKVIVLYEGY 288

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 46.5 bits (110), Expect = 1e-04
 Identities = 48/233 (20%), Positives = 104/233 (44%), Gaps = 21/233 (9%)

Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084
            + L + V  G    ++G +G+GK+T   ++       SG   + G  I T N+  + + +
Sbjct: 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014

Query: 1085 GLVQQEPALFSTT-----IYENIKYGNEDASEIELMK--ATKAANAHGFISRMPEGYQSH 1137
            G   Q  A+         +Y   +     A EIE +   + ++     +  R+   Y   
Sbjct: 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY--- 2071

Query: 1138 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTT 1196
                    SGG K++++ A A++  P ++LLDE T+ +D  +  ++   +  ++ EGR  
Sbjct: 2072 --------SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAV 2123

Query: 1197 IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1248
            ++ +H +        ++A++ +G    +G+ + L  K    Y   ++++  K+
Sbjct: 2124 VLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKD 2176

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
           + LSGG  ++ A+ RA++ NP +LLLDE T+ LD E+
Sbjct: 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191

Length = 635

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 41/206 (19%)

Query: 1031 VSAGRSLAVVGQSGSGKSTVIS-LVMRFYDPISGTVLI-------DGYDIRTLN------ 1076
            ++ GR   +VG++G+GK+T +  + M   D I     I        G D   L       
Sbjct: 200  LAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTD 259

Query: 1077 ---LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASE--------------IELMKA-- 1117
                + L  +  LV Q+  L   T     K  N+D  +              +EL+ A  
Sbjct: 260  IERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYT 319

Query: 1118 --TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
               +AA+    +S  PE             SGG + R+A+ARA+   P +LLLDE T+ L
Sbjct: 320  AEARAASILAGLSFTPEMQVK----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHL 375

Query: 1176 DTASENLIQEALDKLMEGRTTIMVAH 1201
            D  +   ++  L K    +T I+V+H
Sbjct: 376  DLHAVLWLETYLLKW--PKTFIVVSH 399

Length = 718

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 45.5 bits (108), Expect = 2e-04
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 499 GLPDGYQTQVGEGGTQ-LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL 557
           GL     T+VG    + +SGG+++R++IA A L   KI   D AT  LD+ + L   RAL
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252

Query: 558 EKI--MSNRTTIVVAHRLS--TVRDVDTIMVLKNGQVVESG 594
           +    + + T +V  ++ S       D ++VL  G  +  G
Sbjct: 253 KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 43.8 bits (104), Expect = 3e-04
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 30/129 (23%)

Query: 493 AHSFVEGLPD-------------GYQTQVGEGGTQLSGGQKQRIAIARAVLR---NPKIL 536
           A  F E +P              GY  ++G+  T LSGG+ QRI +A+ + +      + 
Sbjct: 136 ALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLY 194

Query: 537 LLDEATSAL---DAESELIV-QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL------K 586
           +LDE T+ L   D +  L V QR ++K     T +V+ H L  ++  D I+ L       
Sbjct: 195 ILDEPTTGLHFHDVKKLLEVLQRLVDK---GNTVVVIEHNLDVIKCADWIIDLGPEGGDG 251

Query: 587 NGQVVESGT 595
            GQVV SGT
Sbjct: 252 GGQVVASGT 260

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 44.9 bits (107), Expect = 3e-04
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 58/191 (30%)

Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083
            FEN+++K   G    ++G +G GKST + ++    +P +G V +D       N R     
Sbjct: 17   FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD------PNER----- 65

Query: 1084 IGLVQQEPALFSTTIYEN----------------IK------YGNEDASEIELMKATKAA 1121
            +G ++Q+   F+   +E                 +K      Y   + SE + MK    A
Sbjct: 66   LGKLRQDQ--FA---FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKV---A 117

Query: 1122 NAHGFISRMPEGY--QSHVGD--RGV------------QLSGGQKQRVAIARAILKNPSI 1165
            +     + M +GY  ++  G+   GV            +++ G K RV +A+A+  NP I
Sbjct: 118  DLEVKFAEM-DGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDI 176

Query: 1166 LLLDEATSALD 1176
            LLLDE T+ LD
Sbjct: 177  LLLDEPTNNLD 187

Length = 530

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 17/32 (53%), Positives = 25/32 (78%)

Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
           LSGG +Q++AIAR ++  PK+L+LDE T  +D
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427

Length = 501

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 43.2 bits (103), Expect = 8e-04
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 371 PKLAGQ-IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429
           P+L  + IE   +  ++  R  ++ ++L+FS+  G     +GP+G+GKST+  M+    +
Sbjct: 318 PRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375

Query: 430 PTSGKI 435
           P SG I
Sbjct: 376 PDSGTI 381

Length = 556

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 43.7 bits (103), Expect = 8e-04
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 1138 VGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-GRT 1195
            VG  GV  LS  Q++R+ IA  ++ NPSI+ +DE TS LD  +  ++   +   ++ GRT
Sbjct: 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071

Query: 1196 TIMVAHRLS 1204
             +   H+ S
Sbjct: 1072 VVCTIHQPS 1080

Length = 1470

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 43.0 bits (102), Expect = 9e-04
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 574
           LSGG+K R+   + +++ P +L++DE T+ +D ES   +  ALEK     T I V+H   
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDRE 496

Query: 575 TVRDVDT-IMVLKNGQVVE-SGTHVD-LISKG 603
            V  + T I+ +    VV+ SGT+ + L S+G
Sbjct: 497 FVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528

Length = 530

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 37/220 (16%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE-- 452
           E ++FSV AG+     G  G+G+S ++ ++      T+G++ LDG   K + ++  R+  
Sbjct: 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG---KPIDIRSPRDAI 326

Query: 453 QMGLV------SQEPALFATSIANNILLGKEDASMDR-------VIEAAK-AANAHSFVE 498
           + G++        E  +   S+A+NI     + S  R       +I     A NA  F+ 
Sbjct: 327 RAGIMLCPEDRKAEGIIPVHSVADNI-----NISARRHHLRAGCLINNRWEAENADRFIR 381

Query: 499 GL----PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD--AESELI 552
            L    P   Q  +      LSGG +Q+  + R +  + K++LLDE T  +D  A+ E I
Sbjct: 382 SLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE-I 435

Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVV 591
                E        + V+  L  V  V D I+V++ G++ 
Sbjct: 436 YNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475

Length = 501

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 53/208 (25%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
           NL+ S+         G SGSGKST+++  + LY   SGK  L    +  L          
Sbjct: 13  NLDVSIPLNVLVVVTGVSGSGKSTLVN--EGLYA--SGKARL----ISFLPK-------- 56

Query: 456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL 515
             S+   +F   +   I +G                           GY T +G+  + L
Sbjct: 57  -FSRNKLIFIDQLQFLIDVGL--------------------------GYLT-LGQKLSTL 88

Query: 516 SGGQKQRIAIARAVLRNPK--ILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHR 572
           SGG+ QR+ +A  +   P   + +LDE ++ L  +    +   ++ ++    T I++ H 
Sbjct: 89  SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148

Query: 573 LSTVRDVDTIMVL------KNGQVVESG 594
           L  +   D I+          G+VV SG
Sbjct: 149 LDVLSSADWIIDFGPGSGKSGGKVVFSG 176

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1201
            LSGG+K R+   + +++ P++L++DE T+ +D  S   +  AL+K  EG T I V+H
Sbjct: 439  LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSH 493

Length = 530

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 1035 RSLAVV-GQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRRKIGLVQQE 1090
             ++  + G +G GKS+++ ++     P SG +     +I  +       +   +GL    
Sbjct: 26   SAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLK--- 82

Query: 1091 PALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150
                  T++EN+K+ +E  +  E + A      H F           + ++   LS G +
Sbjct: 83   ---LEMTVFENLKFWSEIYNSAETLYAA----IHYF------KLHDLLDEKCYSLSSGMQ 129

Query: 1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALD-KLMEGRTTIMVAHRLSTIRNA 1209
            + VAIAR I     + LLDE  + L   + +L+   +  K   G   ++ +H  S+I++A
Sbjct: 130  KIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA 189

Length = 195

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 411 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 470
           G +G GKS+++ M+  + +P+SG I     ++ ++                  + T I +
Sbjct: 33  GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---------------KPYCTYIGH 77

Query: 471 NILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ--VGEGGTQLSGGQKQRIAIARA 528
           N+ L  E    + +   ++  N+   +      ++    + E    LS G ++ +AIAR 
Sbjct: 78  NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARL 137

Query: 529 VLRNPKILLLDEATSALDAESE-----LIVQRA 556
           +     + LLDE  + L  E+      LIV +A
Sbjct: 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKA 170

Length = 195

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 1143 VQLSGGQKQRVAIARAI----LKNPSILLLDEATSALDTASENLIQEALDK-LMEGRTTI 1197
            +QLSGG+K+  A+A  +    LK   + +LDE    LD      + EA+ + L++G   I
Sbjct: 76   LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135

Query: 1198 MVAHRLSTIRNADKIA 1213
            ++ H       ADK+ 
Sbjct: 136  VITHLPELAELADKLI 151

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 1145 LSGGQKQRVAIARAILKNPS--ILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAH 1201
            LSGG+ QR+ +A  I    +  + +LDE +  L     + + E L +L + G T ++V H
Sbjct: 138  LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197

Query: 1202 RLSTIRNADKI 1212
               TIR AD +
Sbjct: 198  DEDTIRAADHV 208

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVI 1051
            IEL N+S   P      + ++L+ ++  G  L + G SG+GKS++ 
Sbjct: 1    IELENLSLATP--DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLF 44

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 8/60 (13%)

Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAES-ELIVQRALEKIMSNR--TTIVVAH 571
           LSGG++ R+ +AR  L+   +L+LDE T+ LD E+ EL     LE+++ +   T ++V+H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLEL-----LEELLDSYQGTVLLVSH 495

Length = 635

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 42.3 bits (100), Expect = 0.002
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 17/106 (16%)

Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLR---NPKILLLDEATSAL---DAESEL-IVQR 555
           GY  ++G+  T LSGG+ QRI +A+ + +      + +LDE T+ L   D +  L ++QR
Sbjct: 819 GY-IRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQR 877

Query: 556 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 595
            ++K     T +V+ H L  ++  D I+ L        G VV SGT
Sbjct: 878 LVDK---GNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGT 920

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 15/70 (21%)

Query: 514 QLSGGQKQ------RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM------ 561
           + SGG+K       R+A+A     N  IL LDE T+ LD E+   ++ +L +I+      
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIEERKSQ 171

Query: 562 SNRTTIVVAH 571
            N   IV+ H
Sbjct: 172 KNFQLIVITH 181

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 41.5 bits (98), Expect = 0.003
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1201
            LSGG++ R+ +AR  LK  ++L+LDE T+ LD  +  L++E LD   +G T ++V+H
Sbjct: 441  LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS-YQG-TVLLVSH 495

Length = 635

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           +E   +   + + P  +F+NLN  ++AG+  A +G +G GK+T++  +    EP SG +
Sbjct: 320 LEVENLTKGFDNGP--LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376

Length = 530

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 51/209 (24%), Positives = 78/209 (37%), Gaps = 62/209 (29%)

Query: 1005 NIELRNV-SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVI-SLVMRFY---D 1059
             + +RN+ SF    R +I  F  L L         +VGQ+G+GK+T+I +L         
Sbjct: 3    KLSIRNIRSFH--ERSEIEFFSPLTL---------IVGQNGAGKTTIIEALKYALTGELP 51

Query: 1060 PISGTVLIDGYDIR--------TLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASE 1111
            P S     D   IR         L   +   K   + +  A+    I+     G  +   
Sbjct: 52   PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIF--CHQGESNW-- 107

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ------RVAIARAILKNPSI 1165
                           +  M             + SGG+K       R+A+A     N  I
Sbjct: 108  --------------PLLDMRG-----------RCSGGEKVLASLIIRLALAETFGSNCGI 142

Query: 1166 LLLDEATSALDTASENLIQEALDKLMEGR 1194
            L LDE T+ LD   E  I+E+L +++E R
Sbjct: 143  LALDEPTTNLD---EENIEESLAEIIEER 168

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           IE   +  A P    ++ ++L+F +  G      GPSG+GKS++   +  L+   SG+I
Sbjct: 1   IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 1145 LSGGQKQRVAIAR--AILK-NPS-ILLLDEATSALDTASENLIQEALDKLMEGRTTIMVA 1200
            LSGG+K   A+A   AI +  PS   +LDE  +ALD A+       L +  +    I++ 
Sbjct: 114  LSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVIT 173

Query: 1201 HRLSTIRNADK-IAVLQQGK 1219
            HR  T+  AD+   V  Q  
Sbjct: 174  HRKGTMEAADRLYGVTMQES 193

Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1253
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
KOG0927	614	consensus Predicted transporter (ABC superfamily)	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
KOG0062	582	consensus ATPase component of ABC transporters wit	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG4178	604	ABC-type uncharacterized transport system, permeas	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG4178	604	ABC-type uncharacterized transport system, permeas	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.1e-223  Score=2033.56  Aligned_cols=1206  Identities=52%  Similarity=0.846  Sum_probs=1116.7

Q ss_pred             chHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000851           34 SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW  113 (1253)
Q Consensus        34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (1253)
                      ..++.++|+|..++++.+++++.+++++.++.+|++.+++|+++|.+..... . ...+.+..+++.+++++++.++..|
T Consensus        12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~-~-~~~~~~~~~~l~~~~lg~~~~~~~~   89 (1228)
T KOG0055|consen   12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN-K-IASSEVSKVALYFVYLGVGVFISGF   89 (1228)
T ss_pred             ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc-h-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6678999999999999999999999999999999999999999998765431 1 2224567788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT  193 (1253)
Q Consensus       114 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1253)
                      ++..||.+.++|+..++|.++++.+++++++|||.+ .+|++.+++++|++.|+++++++++.+++.+.++++++++.|+
T Consensus        90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~  168 (1228)
T KOG0055|consen   90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY  168 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999984 7799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000851          194 SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK  273 (1253)
Q Consensus       194 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~  273 (1253)
                      ..|+|+++++.+.|++++....+.+.+.+...+.+++++++.++++|+++++|||.+|+.|+.+.++|.+.++...+...
T Consensus       169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi  248 (1228)
T KOG0055|consen  169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI  248 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          274 KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISII  353 (1253)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l  353 (1253)
                      +...+.++..++..++.+..+++.+|||+.++.++..++|++++++++++.....+++..|.+..+.+|++|+.+|++.+
T Consensus       249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i  328 (1228)
T KOG0055|consen  249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI  328 (1228)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence            99999999999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCc-ccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCC
Q 000851          354 KENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS  432 (1253)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~-~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~  432 (1253)
                      +..|.++ +....+......+|.|+|+||+|+||++|+. +|+|+||+|++|+++||||||||||||++++|.|||+|++
T Consensus       329 ~~~~~i~-~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~  407 (1228)
T KOG0055|consen  329 DRKPSID-PYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS  407 (1228)
T ss_pred             cCCCCCC-cccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence            9988776 3222333445578999999999999998754 9999999999999999999999999999999999999999


Q ss_pred             cEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCC
Q 000851          433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG  512 (1253)
Q Consensus       433 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g  512 (1253)
                      |+|++||.|+++++.+|+|++||+|+|||.||++||+|||+||+|+++.+++.+||+++++++||..||+||||.+||+|
T Consensus       408 G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g  487 (1228)
T KOG0055|consen  408 GEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERG  487 (1228)
T ss_pred             ceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 000851          513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE  592 (1253)
Q Consensus       513 ~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~  592 (1253)
                      .+|||||||||||||||++||+||||||||||||+++|+.++++|++.++|||+|+|||||+|+++||+|+||++|+|+|
T Consensus       488 ~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE  567 (1228)
T KOG0055|consen  488 VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVE  567 (1228)
T ss_pred             CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCcchhhhcCchHHHHHHhhhcccCCCC--Cc----ccCCCCCCCCCCCCCCCCcccchhhh---hhhhhhhccccCCC
Q 000851          593 SGTHVDLISKGGEYAALVNLQSSEHLSNP--SS----ICYSGSSRYSSFRDFPSSRRYDVEFE---SSKRRELQSSDQSF  663 (1253)
Q Consensus       593 ~g~~~~l~~~~~~y~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  663 (1253)
                      .|+|+||++.+|.|.+|++.|......+.  ..    .....+...+. ......+.......   ..+.++.+......
T Consensus       568 ~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  646 (1228)
T KOG0055|consen  568 QGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSS-SSPSLSRGSNRSNLLSVKPEGEDPEEPVSEE  646 (1228)
T ss_pred             ecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhcccccc-ccccccCCccccccccccccccccccccccc
Confidence            99999999999999999999865443221  00    00000000000 00000000000000   00000000000111


Q ss_pred             CCcchHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000851          664 APSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLL  743 (1253)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  743 (1253)
                      ....++++++++++|+|++++++++++++.|+..|++++.+++++..+..++++........|+++|+++++...+..++
T Consensus       647 ~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~  726 (1228)
T KOG0055|consen  647 DEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFL  726 (1228)
T ss_pred             cccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            25568999999999999999999999999999999999999999999987766666655556999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          744 QHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFI  823 (1253)
Q Consensus       744 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~  823 (1253)
                      ++|++.+++++++.++|..+|+++++++++|||.++|+ |.|.+|+.+|...++..++..+..+++++..++++++++|+
T Consensus       727 q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~  805 (1228)
T KOG0055|consen  727 QHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI  805 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHH
Q 000851          824 LSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQAL  903 (1253)
Q Consensus       824 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~  903 (1253)
                      ++|++++++++..|++++..+...+++.++..+..+.+.++++.+.|++++++||++|+.|+++.+.|.+.++...+...
T Consensus       806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~  885 (1228)
T KOG0055|consen  806 YGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSF  885 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          904 LRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGIL  983 (1253)
Q Consensus       904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~  983 (1253)
                      +++.++++.+++++++.++.+++++|||.+++..+.+++.+++.+++.+.+.+..+++...+.|++.++..|++++++++
T Consensus       886 ~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~  965 (1228)
T KOG0055|consen  886 KRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEIL  965 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCcc
Q 000851          984 YRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063 (1253)
Q Consensus       984 ~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G 1063 (1253)
                      ++++..+++.+.+...++.+|+|+|+||+|+||+||+.+||+|+||+|++||++||||||||||||++.||.|||||++|
T Consensus       966 dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G 1045 (1228)
T KOG0055|consen  966 DRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG 1045 (1228)
T ss_pred             cCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence            99987776654444456788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCC
Q 000851         1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 1143 (1253)
Q Consensus      1064 ~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~ 1143 (1253)
                      .|.|||+||+++++++||++||+|+|||.||++||||||.||.++++++||.+|+|.|++|+||.+||+||||.|||+|.
T Consensus      1046 ~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1046 KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred             eEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence            99999999999999999999999999999999999999999966689999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEe
Q 000851         1144 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1223 (1253)
Q Consensus      1144 ~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~ 1223 (1253)
                      +||||||||||||||++|||+||||||||||||.++|+.||++|++...|||+|+|||||+||++||.|+|+++|+|+|+
T Consensus      1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred             cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhHHhhcccchHHHHHHHhhc
Q 000851         1224 GSHEQLLRKENGIYKQLIRLQQD 1246 (1253)
Q Consensus      1224 Gt~~eLl~~~~g~y~~L~~~~~~ 1246 (1253)
                      |||+||++ ++|.|++|++.|..
T Consensus      1206 GtH~~L~~-~~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1206 GTHDELLA-KRGIYFRLVQLQSS 1227 (1228)
T ss_pred             ccHHHHHh-CCCchHHHhhhccC
Confidence            99999999 79999999998853

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=7.6e-178  Score=1759.83  Aligned_cols=1198  Identities=31%  Similarity=0.523  Sum_probs=1024.0

Q ss_pred             cchHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 000851           33 QSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSA  112 (1253)
Q Consensus        33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (1253)
                      ++.++.++|+|..+.++.+++++++++++.+++.|++|+++++++|.+...        ..+..+++++++++++.+++.
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~--------~~~~~~~~~~~~~~i~~~~~~  114 (1466)
T PTZ00265         43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG--------ENVNDIIFSLVLIGIFQFILS  114 (1466)
T ss_pred             ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHHHH
Confidence            455799999999888888889999999999999999999999999976321        112233455667777788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          113 WIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGF  192 (1253)
Q Consensus       113 ~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (1253)
                      +++.+++.++++++..++|.++|++++++|++|||. .++|++++++++|++.+++.++..+..++..++.++++++++|
T Consensus       115 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~  193 (1466)
T PTZ00265        115 FISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN-NPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL  193 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998 5889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000851          193 TSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG  272 (1253)
Q Consensus       193 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~  272 (1253)
                      +++|+|++++++++|+++++..++.+++++..++.++..+++++.++|.++|+++||+|+.|+.+.++|++..+.+.+..
T Consensus       194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~  273 (1466)
T PTZ00265        194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI  273 (1466)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999889999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          273 KKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHG--------DTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKA  344 (1253)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g--------~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  344 (1253)
                      .+.....++..++..++.++++++++|+|++++.+|        .+++|++++++++.+.....+..+.+.+..++++.+
T Consensus       274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~  353 (1466)
T PTZ00265        274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE  353 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999889999988999999999999999986        588999998877777766777888889999999999


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHH
Q 000851          345 AAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM  423 (1253)
Q Consensus       345 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~l  423 (1253)
                      |++||+++++.+++.+ . ...+...+.. +.|+|+||+|+|++++ .++|+|+||+|++||++|||||||||||||+++
T Consensus       354 a~~ri~~ii~~~~~~~-~-~~~~~~~~~~-~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~l  430 (1466)
T PTZ00265        354 ATNSLYEIINRKPLVE-N-NDDGKKLKDI-KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKL  430 (1466)
T ss_pred             HHHHHHHHHcCCCCCC-C-CCCCccCCCC-CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence            9999999999877643 1 1111222222 4799999999998654 359999999999999999999999999999999


Q ss_pred             HHccCCCCCcEEEE-CCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCC-------------------------
Q 000851          424 VQRLYEPTSGKILL-DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-------------------------  477 (1253)
Q Consensus       424 l~~~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~-------------------------  477 (1253)
                      |+|+|+|++|+|++ ||+|+++++.+++|++||||+|+|.||++||+|||.+|.+                         
T Consensus       431 L~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (1466)
T PTZ00265        431 IERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNK  510 (1466)
T ss_pred             HHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccc
Confidence            99999999999999 5799999999999999999999999999999999999742                         


Q ss_pred             --------------------------------CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 000851          478 --------------------------------DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       478 --------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriai  525 (1253)
                                                      +.++++++++|+.+++++|+.++|+||||.+|++|.+|||||||||+|
T Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaI  590 (1466)
T PTZ00265        511 RNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISI  590 (1466)
T ss_pred             cccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHH
Confidence                                            245688999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhhcCEEEEEeCC---------------
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNG---------------  588 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G---------------  588 (1253)
                      ||||+++|+|||||||||+||+++++.+++.|+++.  +|+|+|+||||+++++.||+|++|++|               
T Consensus       591 ARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~  670 (1466)
T PTZ00265        591 ARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDP  670 (1466)
T ss_pred             HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccc
Confidence            999999999999999999999999999999999986  489999999999999999999999986               


Q ss_pred             --------------------------------EEEEeeCcchhhh-cCchHHHHHHhhhcccCCC--C--C--cc--cCC
Q 000851          589 --------------------------------QVVESGTHVDLIS-KGGEYAALVNLQSSEHLSN--P--S--SI--CYS  627 (1253)
Q Consensus       589 --------------------------------~i~~~g~~~~l~~-~~~~y~~~~~~~~~~~~~~--~--~--~~--~~~  627 (1253)
                                                      +|+|+|+|+||++ ++|.|+.++..|.......  .  .  ..  ...
T Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~  750 (1466)
T PTZ00265        671 TKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSA  750 (1466)
T ss_pred             cccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccc
Confidence                                            5999999999998 6999999998775432111  0  0  00  000


Q ss_pred             CCCCCCCC--CCCC----CC-c--c--cchhhhhhhhhhhccc-c---------CCCCCcchHHHHHHHhhchhHHHHHH
Q 000851          628 GSSRYSSF--RDFP----SS-R--R--YDVEFESSKRRELQSS-D---------QSFAPSPSIWELLKLNAAEWPYAVLG  686 (1253)
Q Consensus       628 ~~~~~~~~--~~~~----~~-~--~--~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1253)
                      ........  ....    .. .  .  ...........+.... .         ........+.++++..+++++.++++
T Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (1466)
T PTZ00265        751 YKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTII  830 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            00000000  0000    00 0  0  0000000000000000 0         00011113445566666666778888


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          687 SVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA  766 (1253)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~  766 (1253)
                      ++++++.+...|+++++++.++..++...  ........|.+++++++++..++.+++.|+..++++++..++|.++|++
T Consensus       831 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~  908 (1466)
T PTZ00265        831 ALSILVAGGLYPVFALLYAKYVSTLFDFA--NLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFEN  908 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999998776431  2223345677888888888899999999999999999999999999999


Q ss_pred             HHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000851          767 ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAE  846 (1253)
Q Consensus       767 ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~  846 (1253)
                      ++++|++|||.+++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++...+...
T Consensus       909 ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~  988 (1466)
T PTZ00265        909 ILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIR  988 (1466)
T ss_pred             HHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998789999999999999999999999999999999999999999999999999888765555443332222


Q ss_pred             HHHHhhHH--HH-------------HHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000851          847 QLFLKGFG--GD-------------YNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGF  911 (1253)
Q Consensus       847 ~~~~~~~~--~~-------------~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1253)
                      .+......  +.             .++...+....+.|+++|+++||+|+.|+++.++|.+..+...+...+...+.++
T Consensus       989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1466)
T PTZ00265        989 ARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSM 1068 (1466)
T ss_pred             HHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111100  00             1233566788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 000851          912 GYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQP  991 (1253)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~  991 (1253)
                      .+++.+++.++..++++|+|++++..|.+++|++++++.+..+...++..+...++++.++..+.+|++++++.+++.+.
T Consensus      1069 ~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~ 1148 (1466)
T PTZ00265       1069 LWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDV 1148 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC
Confidence            99999999999999999999999999999999999888777666667888899999999999999999999987654321


Q ss_pred             CCCCCcc---cccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC--------
Q 000851          992 DDPASKE---VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-------- 1060 (1253)
Q Consensus       992 ~~~~~~~---~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-------- 1060 (1253)
                      .+.....   ++..+|.|+|+||+|+||++++.+||+|+||+|+|||++||||+||||||||+++|+|||+|        
T Consensus      1149 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~ 1228 (1466)
T PTZ00265       1149 RDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVF 1228 (1466)
T ss_pred             CCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccc
Confidence            1111111   12345789999999999977667899999999999999999999999999999999999999        


Q ss_pred             ----------------------------------------------CccEEEECCccCCCCCHHHHhcceEEEccCCCcc
Q 000851         1061 ----------------------------------------------ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 1094 (1253)
Q Consensus      1061 ----------------------------------------------~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf 1094 (1253)
                                                                    ++|+|++||+|++++++++||++|+||||||+||
T Consensus      1229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF 1308 (1466)
T PTZ00265       1229 KNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF 1308 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc
Confidence                                                          6999999999999999999999999999999999


Q ss_pred             cccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCC
Q 000851         1095 STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174 (1253)
Q Consensus      1095 ~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~ 1174 (1253)
                      +|||||||.+|.|+++++|+++|++.|++++||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+
T Consensus      1309 ~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSa 1388 (1466)
T PTZ00265       1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSS 1388 (1466)
T ss_pred             cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHc--CCceEEEEccCchhhhccCEEEEEeC----CEE-EEecChhHHhhcccchHHHHHHHh
Q 000851         1175 LDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQ----GKV-AEIGSHEQLLRKENGIYKQLIRLQ 1244 (1253)
Q Consensus      1175 LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~----G~i-ve~Gt~~eLl~~~~g~y~~L~~~~ 1244 (1253)
                      ||++||+.|+++|++..  +++|+|+||||++++++||+|+||++    |++ +|+|+|+||+++++|.|++|++.|
T Consensus      1389 LD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265       1389 LDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred             cCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence            99999999999999984  69999999999999999999999999    995 499999999984589999999876

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=6.7e-162  Score=1528.34  Aligned_cols=1091  Identities=22%  Similarity=0.308  Sum_probs=867.0

Q ss_pred             HHHHHHHHHHHH----HHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          122 TGERQTARLRLK----YLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQ  197 (1253)
Q Consensus       122 ~~~~~~~~lR~~----l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1253)
                      ...+...++|..    +|+|.++++-.--.. .++|++++.+++|++++.++... +..+....+.+++++.+++..--.
T Consensus       265 ~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~-~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~  342 (1381)
T KOG0054|consen  265 VSFRVGMRLRSALISAIYRKALRLSNSARGE-TTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGP  342 (1381)
T ss_pred             HHHhhhhhHHHHHHHHHHHhhhcCchhhccC-CCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCh
Confidence            445556666665    455666665554433 47999999999999999998542 233344444444433333322222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          198 LTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGV  277 (1253)
Q Consensus       198 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~  277 (1253)
                      -+++.++++.+++.+..+++++.++...+..+..++....++|.++|||+||.|+||+.+.++.++.++++.+.-.|...
T Consensus       343 sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~  422 (1381)
T KOG0054|consen  343 SALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAY  422 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            24555555666666788899999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000851          278 AKGIGVGLTYGLLFCAWALLLWYAGIL-VRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN  356 (1253)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  356 (1253)
                      ..++...+..+...++.++  .++++. ...+.+|+..+|+.+.++..+-.|+..++..+..+.++.++.+|+.+++..+
T Consensus       423 ~~~~~~~~~~~~p~lv~~~--tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~  500 (1381)
T KOG0054|consen  423 LSALNSFLNFFSPVLVSVV--TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSE  500 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            8887766655555554443  344454 4566788888888877777777899999999999999999999999999765


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEE
Q 000851          357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI  435 (1253)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i  435 (1253)
                      +..+ . ........+.+..|+++|.+|+|++. +++.|+||||+|++|+.+|||||.|||||+|+..|+|+.+..+|++
T Consensus       501 e~~~-~-~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v  578 (1381)
T KOG0054|consen  501 ELDP-D-SVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV  578 (1381)
T ss_pred             ccCc-c-ccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE
Confidence            4322 1 11101122233469999999999752 3349999999999999999999999999999999999999999999


Q ss_pred             EECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCC
Q 000851          436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL  515 (1253)
Q Consensus       436 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L  515 (1253)
                      .++|             .++||||+||+|++||||||.||.| .+.+++.++.+.|++.++++.||.|+.|.|||+|.+|
T Consensus       579 ~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinL  644 (1381)
T KOG0054|consen  579 AVNG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINL  644 (1381)
T ss_pred             EEcC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCC
Confidence            9998             4999999999999999999999987 4678899999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHH-HHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEee
Q 000851          516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG  594 (1253)
Q Consensus       516 SgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~-~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g  594 (1253)
                      ||||||||+||||+|+|+||++||||.||+|+++.+ .+.++++.+.++||+|+|||.++.+++||+|++|+||+|++.|
T Consensus       645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~G  724 (1381)
T KOG0054|consen  645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESG  724 (1381)
T ss_pred             cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEeccc
Confidence            999999999999999999999999999999999765 5667777788999999999999999999999999999999999


Q ss_pred             CcchhhhcCchHHHHHHhhhcccCCC-CCcccCC-CCCCCCCCCCCCCCcccchh--hhhhhhhhhccccCCCCCcchHH
Q 000851          595 THVDLISKGGEYAALVNLQSSEHLSN-PSSICYS-GSSRYSSFRDFPSSRRYDVE--FESSKRRELQSSDQSFAPSPSIW  670 (1253)
Q Consensus       595 ~~~~l~~~~~~y~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  670 (1253)
                      +|+||++.++.|.++......+...+ +...... ........+.........+.  ..........+.+++..+...+.
T Consensus       725 ty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~  804 (1381)
T KOG0054|consen  725 TYEELLKSGGDFAELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWS  804 (1381)
T ss_pred             CHHHHHhcchhHHHHhhccchhhccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHH
Confidence            99999999999998854333222221 0000000 00000000000000000000  00000000000001122222222


Q ss_pred             HHHHHhhchhHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHH---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          671 ELLKLNAAEWPYAVLGS-VGAILAGMEAPLFALGITHILTAFYSPHDSQIK---RVVDQVALIFVGLAVVTIPVYLLQHY  746 (1253)
Q Consensus       671 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~  746 (1253)
                      -+..|.+...++....+ ++..    ..........+.|.++|.+......   .....+.++|.+++++..++..++.+
T Consensus       805 vY~~Y~~a~~g~~~~~~~~~~~----v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~  880 (1381)
T KOG0054|consen  805 VYKKYIKAAGGFLLVLLILLLF----VLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSF  880 (1381)
T ss_pred             HHHHHHHhcccHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222222222111 1111    1122233455667777765432211   24567889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000851          747 FYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW  826 (1253)
Q Consensus       747 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  826 (1253)
                      .+...+.+.+++||++++++++|.||+|||.  +|+|+|+|||++|++.+|..++..+..++++++.+++.++++.+..|
T Consensus       881 ~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P  958 (1381)
T KOG0054|consen  881 LFAKGGLKASRKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTP  958 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence            9999999999999999999999999999996  89999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHH
Q 000851          827 RLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAY----SRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQA  902 (1253)
Q Consensus       827 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~  902 (1253)
                      +.   +++++|+.++.+++ +++....+++.++..    +..-+|+.|++.|+.|||||+.+++|.+++....|.+.+..
T Consensus       959 ~f---li~~~pl~v~~~~~-~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~ 1034 (1381)
T KOG0054|consen  959 WF---LIAIIPLGVIYYFV-QRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAF 1034 (1381)
T ss_pred             HH---HHHHHHHHHHHHHH-HHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHH
Confidence            55   44555665555444 445555677777654    34559999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          903 LLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGI  982 (1253)
Q Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~  982 (1253)
                      +.......|...-.+++..+..+.+..+....-... .+.|.+..++.+.+.....+...+....+++..+.+++|+.++
T Consensus      1035 f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~-~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY 1113 (1381)
T KOG0054|consen 1035 FLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL-ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEY 1113 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence            888777777777777776665555544443332222 6688888888888888899999999999999999999999999


Q ss_pred             hcccccCCCCCCC--CcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 000851          983 LYRKTAIQPDDPA--SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060 (1253)
Q Consensus       983 ~~~~~~~~~~~~~--~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p 1060 (1253)
                      .+.+++.+.+.+.  .++.||.+|.|+|+|++.+|... .++|||||||+|+||||||||||||||||||+++|+|+.+|
T Consensus      1114 ~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~ 1192 (1381)
T KOG0054|consen 1114 TDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP 1192 (1381)
T ss_pred             hcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc
Confidence            9876662222212  24457999999999999999633 35799999999999999999999999999999999999999


Q ss_pred             CccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccC
Q 000851         1061 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGD 1140 (1253)
Q Consensus      1061 ~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge 1140 (1253)
                      .+|+|.|||+||+++++++||++++++||||+||+||+|+||||. .+.+|+++|+|++++++.++|+++|+|||++|.|
T Consensus      1193 ~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1193 AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF-DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred             cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc-cccCHHHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence            999999999999999999999999999999999999999999996 4789999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEE
Q 000851         1141 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220 (1253)
Q Consensus      1141 ~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~i 1220 (1253)
                      +|.|+|.||||++||||||||++|||+|||||+++|++|+..||++|++.|++||||+||||++||.+||||+|||+|+|
T Consensus      1272 gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v 1351 (1381)
T KOG0054|consen 1272 GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRV 1351 (1381)
T ss_pred             CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecChhHHhhcccchHHHHHHHhh
Q 000851         1221 AEIGSHEQLLRKENGIYKQLIRLQQ 1245 (1253)
Q Consensus      1221 ve~Gt~~eLl~~~~g~y~~L~~~~~ 1245 (1253)
                      +|+|+|++|++++++.|++++.+..
T Consensus      1352 ~EfdsP~~Ll~~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1352 VEFDSPAELLSDKDSLFSSLLKEAA 1376 (1381)
T ss_pred             eecCChHHHHhCCcchHHHHHHHHH
Confidence            9999999999988999987776543

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.6e-158  Score=1589.07  Aligned_cols=1150  Identities=20%  Similarity=0.254  Sum_probs=853.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           53 FLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRL  132 (1253)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~  132 (1253)
                      +++.++.++..++....|++++.++|.+....  . .. .... ++..+++..++..++..-..+...+++.++...+|.
T Consensus       304 ~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~--~-~~-~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~  378 (1622)
T PLN03130        304 WLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE--P-AW-IGYI-YAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVA  378 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c-ch-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666666667778999998764321  1 11 1111 111111111111111111111234677788888888


Q ss_pred             HHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          133 KYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVA  212 (1253)
Q Consensus       133 ~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~  212 (1253)
                      .+|+|+++++..++++ .++|++++++++|++++++++. .+..++..++.+++++++++..-...+++.++++.+++.+
T Consensus       379 ~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l  456 (1622)
T PLN03130        379 AVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPI  456 (1622)
T ss_pred             HHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987 5899999999999999999874 4566666666665555544432222222222223344445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          213 GGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC  292 (1253)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (1253)
                      ..++.+++++..++.++..++..+.+.|.++||++||+|++|+.+.+++++..+++.+...+.....++...+.....  
T Consensus       457 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--  534 (1622)
T PLN03130        457 QTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP--  534 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            566778888888888899999999999999999999999999999999999888887777776666554443322222  


Q ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 000851          293 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPK  372 (1253)
Q Consensus       293 ~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~  372 (1253)
                      ..+.++++|++.+.+|.+|+|.+++++.++..+..|+..++..+..+.++.++++||.++++.++..+ .  +... ...
T Consensus       535 ~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~-~--~~~~-~~~  610 (1622)
T PLN03130        535 VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVL-L--PNPP-LEP  610 (1622)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc-c--cCCc-ccC
Confidence            13456678999999999999999998877777778999999999999999999999999997654321 1  0100 111


Q ss_pred             CCCcEEEEEEEEECCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCC-cEEEECCeeCCCCCHHHH
Q 000851          373 LAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS-GKILLDGHDLKSLQLKWL  450 (1253)
Q Consensus       373 ~~~~i~~~~v~f~y~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~~g~~~~~~~~~~~  450 (1253)
                      ..+.|+++||+|+|++++ +++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+             
T Consensus       611 ~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------  677 (1622)
T PLN03130        611 GLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------  677 (1622)
T ss_pred             CCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------
Confidence            134799999999997532 459999999999999999999999999999999999999999 99985             


Q ss_pred             hcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000851          451 REQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL  530 (1253)
Q Consensus       451 r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~  530 (1253)
                      |++|+||+|+||||++||||||.||+| .+++++.++++.|+++++++.||+|++|.|||+|.+|||||||||+||||++
T Consensus       678 ~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly  756 (1622)
T PLN03130        678 RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVY  756 (1622)
T ss_pred             cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHh
Confidence            458999999999999999999999987 4789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCchHHHH
Q 000851          531 RNPKILLLDEATSALDAESELIV-QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL  609 (1253)
Q Consensus       531 ~~p~ililDE~ts~lD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~  609 (1253)
                      ++|+||||||||||||+++++.+ .++++...+++|+|+||||++.++.||+|++|++|+|+++|+|+||+++++.|+++
T Consensus       757 ~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l  836 (1622)
T PLN03130        757 SNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKL  836 (1622)
T ss_pred             CCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHH
Confidence            99999999999999999999876 46677777899999999999999999999999999999999999999999999998


Q ss_pred             HHhhhcccCCCCCcccC-CC--CCCCCCC---CCCCCCcccc-hhh-hhhhhhhhccccCCCCCcchHHHHHHHhhchhH
Q 000851          610 VNLQSSEHLSNPSSICY-SG--SSRYSSF---RDFPSSRRYD-VEF-ESSKRRELQSSDQSFAPSPSIWELLKLNAAEWP  681 (1253)
Q Consensus       610 ~~~~~~~~~~~~~~~~~-~~--~~~~~~~---~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (1253)
                      +..+...+......... ..  .......   .......... ... ......+.++..........++++++.. +.++
T Consensus       837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~-g~~~  915 (1622)
T PLN03130        837 MENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNAL-GGAW  915 (1622)
T ss_pred             HHhcccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHh-ccHH
Confidence            86543211110000000 00  0000000   0000000000 000 0000000000001111111222222211 1111


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          682 YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRL  761 (1253)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~  761 (1253)
                      .+.+.+++.++.    ..+. .+...|..+|.+...........|.++|++++++..++.+++.+++...+.+.+.++|.
T Consensus       916 ~~~~~~~~~~~~----~~~~-~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~  990 (1622)
T PLN03130        916 VVMILFLCYVLT----EVFR-VSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHD  990 (1622)
T ss_pred             HHHHHHHHHHHH----HHHH-HHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211111111111    1111 12334444443221111112345677788888888889999999999999999999999


Q ss_pred             HHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000851          762 SMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIG  841 (1253)
Q Consensus       762 ~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~  841 (1253)
                      +++++++++|++|||.  +++|+++||+++|++.++..++..+..++..++.+++.++++++++|..   +++++|+.++
T Consensus       991 ~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~---~~~~~pl~~~ 1065 (1622)
T PLN03130        991 AMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTIS---LWAIMPLLVL 1065 (1622)
T ss_pred             HHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            9999999999999984  8999999999999999999999999999999998888888888777632   2233444333


Q ss_pred             HHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000851          842 AFVAEQLFLKGFGGDYN----RAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQ  917 (1253)
Q Consensus       842 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  917 (1253)
                      +.+... +..+..++.+    ...++..+++.|+++|++|||+|+.+++|.+.+.+..+...+..+.......|.....+
T Consensus      1066 ~~~~~~-~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~ 1144 (1622)
T PLN03130       1066 FYGAYL-YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLE 1144 (1622)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322222 2222333333    33455678999999999999999999999988888888777765554444444333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 000851          918 LLSLCSYALGLWYASVLIKQKG-SN-----FGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQP  991 (1253)
Q Consensus       918 ~~~~~~~~~~~~~g~~lv~~~~-~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~  991 (1253)
                      ++..   ++.++.+...+..+. ..     .+.+...+.+.......+..+...+..+...+.+++|+.++++.+++.+.
T Consensus      1145 ~~~~---~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~ 1221 (1622)
T PLN03130       1145 TLGG---LMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPL 1221 (1622)
T ss_pred             HHHH---HHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence            3322   222222333333322 11     12222233334444555666666777888999999999999876554322


Q ss_pred             CCC--CCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECC
Q 000851          992 DDP--ASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069 (1253)
Q Consensus       992 ~~~--~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG 1069 (1253)
                      ..+  ...+.++.+|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||
T Consensus      1222 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG 1300 (1622)
T PLN03130       1222 VIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDG 1300 (1622)
T ss_pred             cccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECC
Confidence            111  111224567899999999999632 34799999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhH
Q 000851         1070 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 1149 (1253)
Q Consensus      1070 ~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQ 1149 (1253)
                      +||++++++++|++|++|||||+||+|||||||+|++ +.+|+|+|+|++++++++||+++|+||||+|||+|.+|||||
T Consensus      1301 ~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQ 1379 (1622)
T PLN03130       1301 CDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQ 1379 (1622)
T ss_pred             EecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHH
Confidence            9999999999999999999999999999999999986 579999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHH
Q 000851         1150 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1150 kQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||||||||||+|+|+|||||||||+||++||+.|+++|++.+++||+|+||||++|+.+||||+|||+|+|+|+|+|+||
T Consensus      1380 rQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130       1380 RQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccchHHHHHHHhhc
Q 000851         1230 LRKENGIYKQLIRLQQD 1246 (1253)
Q Consensus      1230 l~~~~g~y~~L~~~~~~ 1246 (1253)
                      +++++|.|++|++.+..
T Consensus      1460 l~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130       1460 LSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred             HhCCCCHHHHHHHHcCh
Confidence            98667999999987654

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=7.9e-158  Score=1585.45  Aligned_cols=1149  Identities=19%  Similarity=0.248  Sum_probs=856.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           53 FLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRL  132 (1253)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~  132 (1253)
                      +++.++.++..++....|++++.++|.+....  . ... .. .++.++++..++..++.....+...+.+.++...+|.
T Consensus       304 ~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~--~-~~~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~  378 (1495)
T PLN03232        304 WLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD--P-AWV-GY-VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVA  378 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c-cch-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666667677778999999764321  1 110 11 1111111111122222111122235677788888888


Q ss_pred             HHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 000851          133 KYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVP---LI  209 (1253)
Q Consensus       133 ~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p---l~  209 (1253)
                      .+|+|+++++..++++ .++|++++++++|++.+++.+ ..+..++..++.+++++++++   +.+++.+++.++   ++
T Consensus       379 ~i~~k~l~l~~~~~~~-~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v~~l~  453 (1495)
T PLN03232        379 AIFHKSLRLTHEARKN-FASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLILFLL  453 (1495)
T ss_pred             HHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHH
Confidence            9999999999999987 589999999999999999986 445555555555444443322   334443332222   22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          210 AVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGL  289 (1253)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1253)
                      +.+..++.++.++..++.++..++..+.+.|.++||++||+|++|+.+.+++++..+++.+...+.....++...+....
T Consensus       454 ~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~  533 (1495)
T PLN03232        454 IPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSI  533 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23456678888888999999999999999999999999999999999999999998888888877776665543322222


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 000851          290 LFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGIT  369 (1253)
Q Consensus       290 ~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~  369 (1253)
                      .  ..+.++++|++++.+|.+|+|.+++++.++.....|+..+...+..+.++.+|++||.++++.+++.. .  ... .
T Consensus       534 ~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~-~--~~~-~  607 (1495)
T PLN03232        534 P--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERIL-A--QNP-P  607 (1495)
T ss_pred             H--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc-c--ccC-C
Confidence            2  22334688999999999999999999877777788999999999999999999999999997655322 1  111 1


Q ss_pred             CCCCCCcEEEEEEEEECCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH
Q 000851          370 LPKLAGQIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK  448 (1253)
Q Consensus       370 ~~~~~~~i~~~~v~f~y~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~  448 (1253)
                      .....+.|+++|++|+|+++ ++++|+|+||+|++||+++||||||||||||+++|+|+|+|++|.+.            
T Consensus       608 ~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------  675 (1495)
T PLN03232        608 LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------  675 (1495)
T ss_pred             cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------
Confidence            11123479999999999853 24599999999999999999999999999999999999999998763            


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      ++|++|+||+|+||||++||||||.||+| .++++++++++.|+++++++.||+||+|.|||+|.+||||||||||||||
T Consensus       676 ~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA  754 (1495)
T PLN03232        676 VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARA  754 (1495)
T ss_pred             EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHH
Confidence            35678999999999999999999999986 68899999999999999999999999999999999999999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHH-HHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCchHH
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQR-ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA  607 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~  607 (1253)
                      ++++|+||||||||||||+++++.+.+ +++...+++|+|+||||++.++.||+|++|++|+|+++|+|+||+++++.|+
T Consensus       755 ly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~  834 (1495)
T PLN03232        755 VYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFK  834 (1495)
T ss_pred             HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHH
Confidence            999999999999999999999987754 5666678999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccCCCCCcc-cCCCCC-CCCCCCCCCCCcccchhhhh-hh--hhhhccccCCCCCcchHHHHHHHhhchhH-
Q 000851          608 ALVNLQSSEHLSNPSSI-CYSGSS-RYSSFRDFPSSRRYDVEFES-SK--RRELQSSDQSFAPSPSIWELLKLNAAEWP-  681 (1253)
Q Consensus       608 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  681 (1253)
                      +++..+........... ...... ......+............. .+  ..++++   +..+...+..+..+.+...+ 
T Consensus       835 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~g~v~~~vy~~y~~~~~~~  911 (1495)
T PLN03232        835 KLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEE---RETGIISWNVLMRYNKAVGGL  911 (1495)
T ss_pred             HHHHhcccccccccccccccccccccccccccccccccccccccccchhhhhhHHH---HhcCcccHHHHHHHHHHcCcH
Confidence            98876542211110000 000000 00000000000000000000 00  000000   11111122222222222111 


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          682 YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRL  761 (1253)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~  761 (1253)
                      ++...+++..+.   ...+. .....|..+|.+...........|.++|++++++..++.+++.+++...+.+++.++|.
T Consensus       912 ~~~~~~~~~~~~---~~~~~-~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~  987 (1495)
T PLN03232        912 WVVMILLVCYLT---TEVLR-VSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHD  987 (1495)
T ss_pred             HHHHHHHHHHHH---HHHHH-HHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111111   11111 23445555554322110112356788889999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000851          762 SMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIG  841 (1253)
Q Consensus       762 ~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~  841 (1253)
                      +++++++++|++|||  .+++|+++||+++|++.++..++..+..++..++.++++++++++.++..   .++++|+.++
T Consensus       988 ~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~---~~~~~~~~~~ 1062 (1495)
T PLN03232        988 AMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTIS---LWAIMPLLIL 1062 (1495)
T ss_pred             HHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            999999999999998  48999999999999999999999999988888888888877777666432   2233344333


Q ss_pred             HHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000851          842 AFVAEQLFL---KGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQL  918 (1253)
Q Consensus       842 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  918 (1253)
                      +.+....+.   +...+......+...+++.|+++|++|||+|+.++++.+++.+..+...+..+.......|.......
T Consensus      1063 ~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~ 1142 (1495)
T PLN03232       1063 FYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLET 1142 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322222221   22222333445566789999999999999999999999988888887777665544443333222222


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cCC----CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 000851          919 LSLCSYALGLWYASVLIKQ-KGS----NFGD-IMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPD  992 (1253)
Q Consensus       919 ~~~~~~~~~~~~g~~lv~~-~~~----~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~  992 (1253)
                      +   ..++.++.+...+.. +.+    .+.. +..++.+......++..+...+.+++.+..+.+|+.++++.+++.+..
T Consensus      1143 ~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~ 1219 (1495)
T PLN03232       1143 L---GGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAI 1219 (1495)
T ss_pred             H---HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            2   222222333333332 322    1111 222333334455566777788889999999999999998765543321


Q ss_pred             CCC--CcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCc
Q 000851          993 DPA--SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY 1070 (1253)
Q Consensus       993 ~~~--~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~ 1070 (1253)
                      ...  ..+.++.+|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+
T Consensus      1220 ~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~ 1298 (1495)
T PLN03232       1220 IENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDC 1298 (1495)
T ss_pred             ccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCE
Confidence            111  11224567889999999999632 357999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1071 DIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1071 di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      |+++++++++|++|++|||||+||+|||||||++++ +++|+|+++|+++++++++|+++|+||||++||+|.+||||||
T Consensus      1299 di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232       1299 DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred             EhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence            999999999999999999999999999999999975 6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHh
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      |||||||||+|+|+|||||||||+||++||+.|+++|++.+++||+|+||||++++.+||+|+|||+|+|+|+|+|+||+
T Consensus      1378 QrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232       1378 QLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred             HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccchHHHHHHHhhcc
Q 000851         1231 RKENGIYKQLIRLQQDK 1247 (1253)
Q Consensus      1231 ~~~~g~y~~L~~~~~~~ 1247 (1253)
                      ++++|.|++|++.+...
T Consensus      1458 ~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232       1458 SRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred             hCCCCHHHHHHHHhChh
Confidence            96667999999877543

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1.7e-152  Score=1535.69  Aligned_cols=1168  Identities=19%  Similarity=0.244  Sum_probs=880.3

Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000851           35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      ..++.+++.+++.    ++.+++..++..++....|++++.++|.+.... .+ ....  ..++..++++.++..++...
T Consensus       306 sl~~~l~~~~~~~----~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~-~~-~~~g--~~~~~~~~~~~~~~~~~~~~  377 (1522)
T TIGR00957       306 SLFKVLYKTFGPY----FLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPM-AP-DWQG--YFYTGLLFVCACLQTLILHQ  377 (1522)
T ss_pred             cHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cc-cchH--HHHHHHHHHHHHHHHHHHHH
Confidence            3445555544322    233344444555555556668899999764321 11 1111  11112222222233333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      ..+...+.+.++...++..+|+|+++++..++++ .++|++++++++|++++.+.. ..+..++..++.+++++++++..
T Consensus       378 ~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~-~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~  455 (1522)
T TIGR00957       378 YFHICFVSGMRIKTAVMGAVYRKALVITNSARKS-STVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLN  455 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC-CCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566788899999999999999999999987 589999999999999999865 34455555555555555443332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      -...+++.++++++++.+..++.+++++..++.++..++..+.+.|.++||++||+|++|+.+.+++++.++++.+...+
T Consensus       456 ~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~  535 (1522)
T TIGR00957       456 LGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKK  535 (1522)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            22234455555666667777888899999999999999999999999999999999999999999999998888877766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRH--GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI  352 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~--g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~  352 (1253)
                      ......+.........  ..+.++.++.+.+..  +.++.+.+|+.+.++.....|+..+...+..++++.+|++||.++
T Consensus       536 ~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~  613 (1522)
T TIGR00957       536 SAYLHAVGTFTWVCTP--FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIF  613 (1522)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665544332221111  122233456676663  568899988877666666779999999999999999999999999


Q ss_pred             HhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCC
Q 000851          353 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS  432 (1253)
Q Consensus       353 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~  432 (1253)
                      ++.+++.+ .........+...+.|+++|++|+|++.++++|+|+||++++||+++|+||||||||||+++|+|+++|++
T Consensus       614 l~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~  692 (1522)
T TIGR00957       614 LSHEELEP-DSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE  692 (1522)
T ss_pred             HcCccccc-ccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC
Confidence            97654321 10000000011123799999999997544459999999999999999999999999999999999999999


Q ss_pred             cEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCC
Q 000851          433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG  512 (1253)
Q Consensus       433 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g  512 (1253)
                      |+|.+||             +|+||+|+||+|++||+|||.+|.+ .+++++.++++.+++.+++..+|+|++|.+|++|
T Consensus       693 G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g  758 (1522)
T TIGR00957       693 GHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKG  758 (1522)
T ss_pred             cEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCC
Confidence            9999997             5999999999999999999999976 4567788888999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHH---HcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000851          513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK---IMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ  589 (1253)
Q Consensus       513 ~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~l~~~~~~d~i~vl~~G~  589 (1253)
                      .+|||||||||+||||++++|+|+|||||||+||+++++.+.+.+.+   +.+++|+|+|||+++.+..||+|++|++|+
T Consensus       759 ~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~  838 (1522)
T TIGR00957       759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGK  838 (1522)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCe
Confidence            99999999999999999999999999999999999999999998853   456899999999999999999999999999


Q ss_pred             EEEeeCcchhhhcCchHHHHHHhhhcccCCCC-C-c------ccCCCC---CC--------CCCC-CC---CCC---C--
Q 000851          590 VVESGTHVDLISKGGEYAALVNLQSSEHLSNP-S-S------ICYSGS---SR--------YSSF-RD---FPS---S--  641 (1253)
Q Consensus       590 i~~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~-~-~------~~~~~~---~~--------~~~~-~~---~~~---~--  641 (1253)
                      |++.|+|++++++++.|.+++..+...+..+. . .      ......   ..        .... ..   ...   .  
T Consensus       839 i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  918 (1522)
T TIGR00957       839 ISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQS  918 (1522)
T ss_pred             EEeeCCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence            99999999999988999888764432111000 0 0      000000   00        0000 00   000   0  


Q ss_pred             cc---c-c-hhhhhh----hhhhhccccCCCCCcchHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 000851          642 RR---Y-D-VEFESS----KRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFY  712 (1253)
Q Consensus       642 ~~---~-~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (1253)
                      ..   . . .....+    ....++...........++.+++.  .++...++.+++..+..     ....+..+|..+|
T Consensus       919 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~--~g~~~~~~~~~~~~~~~-----~~~~~~~~~l~~w  991 (1522)
T TIGR00957       919 RHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKA--IGLFITFLSIFLFVCNH-----VSALASNYWLSLW  991 (1522)
T ss_pred             ccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHH--cCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence            00   0 0 000000    000000000001111122222221  11221111111111111     1122334444444


Q ss_pred             CCCch--hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHH
Q 000851          713 SPHDS--QIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLA  790 (1253)
Q Consensus       713 ~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s  790 (1253)
                      .....  ........+..+|++++++..++.++..++....+.++..++|.+++++++++|++|||.  +++|+++||++
T Consensus       992 ~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s 1069 (1522)
T TIGR00957       992 TDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFS 1069 (1522)
T ss_pred             hccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHH
Confidence            32210  001112345667888888888888888899999999999999999999999999999984  89999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000851          791 ADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVARE  870 (1253)
Q Consensus       791 ~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  870 (1253)
                      +|++.++..++..+..++..++.+++.++++++.+|.++++++.+++++++......+..+...+......+...+++.|
T Consensus      1070 ~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E 1149 (1522)
T TIGR00957      1070 KELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNE 1149 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999999988888888766554443333332222222222222222333445667799999


Q ss_pred             HHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHH
Q 000851          871 AIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIK-QKGSNFGDIMKSF  949 (1253)
Q Consensus       871 ~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~~~~~~g~~~~~~  949 (1253)
                      +++|++|||+||++++|.+++.+..+...+..+.....+.|.....+++..+   +.++.+...+. .+.++.|.+..++
T Consensus      1150 ~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l 1226 (1522)
T TIGR00957      1150 TLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSV 1226 (1522)
T ss_pred             HhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            9999999999999999999999999999998887777777766655554432   33444444443 5778999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CC-CCcccccccCcEEEEeEEEECCCCCCcccccce
Q 000851          950 MVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPD-DP-ASKEVTEIKGNIELRNVSFKYPVRPDITIFENL 1027 (1253)
Q Consensus       950 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~-~~-~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~i 1027 (1253)
                      .+......++..+...+.++..++.+++|+.++++.+++.+.. +. ...+.++.+|.|+|+||+|+|+++ .++||+|+
T Consensus      1227 ~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~i 1305 (1522)
T TIGR00957      1227 SYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHI 1305 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-Ccccccce
Confidence            8888889999999999999999999999999998765443211 11 111224567899999999999744 24799999


Q ss_pred             eEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCC
Q 000851         1028 NLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE 1107 (1253)
Q Consensus      1028 sl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~ 1107 (1253)
                      ||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||++.. 
T Consensus      1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~- 1384 (1522)
T TIGR00957      1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS- 1384 (1522)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999754 


Q ss_pred             CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHH
Q 000851         1108 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1187 (1253)
Q Consensus      1108 ~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l 1187 (1253)
                      +++|+|+++|+++++++++|.++|+||||+|||+|.+||||||||+||||||+|+|+|||||||||+||++||+.|+++|
T Consensus      1385 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957      1385 QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred             CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHHHHh
Q 000851         1188 DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244 (1253)
Q Consensus      1188 ~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~~~ 1244 (1253)
                      ++.+++||||+||||++++.+||||+|||+|+|+|+|+|+||+++ +|.|++|+++.
T Consensus      1465 ~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957      1465 RTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred             HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence            999999999999999999999999999999999999999999984 79999999863

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.5e-145  Score=1462.82  Aligned_cols=1171  Identities=18%  Similarity=0.220  Sum_probs=882.1

Q ss_pred             chHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000851           34 SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW  113 (1253)
Q Consensus        34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (1253)
                      ...++.+++..++    .+++++++.++..++....|++++.+++.+...  +. . ......++..++++.++..++..
T Consensus       232 ~~l~~~l~~~~~~----~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~--~~-~-~~~g~~l~~~l~~~~~~~~~~~~  303 (1560)
T PTZ00243        232 LSLLRTLFAALPY----YVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD--NA-T-WGRGLGLVLTLFLTQLIQSVCLH  303 (1560)
T ss_pred             cHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc-c-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555554332    233445555666666666677899999876322  11 1 11111111122222233344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDT-EARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGF  192 (1253)
Q Consensus       114 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~-~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (1253)
                      ...+...+.+.++...++..+|+|+++++...+.. +.++|++++.+++|++++.+++.. +..++..++.++++++++.
T Consensus       304 ~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~  382 (1560)
T PTZ00243        304 RFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLS  382 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            44555667778888888899999999999887752 147899999999999999999844 5667777888888787777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000851          193 TSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG  272 (1253)
Q Consensus       193 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~  272 (1253)
                      .+..+.+++.++++++++.+..++.++..+..++..+..++..+.+.|.++|||+||.+++|+.+.+++++.++++.+..
T Consensus       383 ~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l  462 (1560)
T PTZ00243        383 RLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYL  462 (1560)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666788888888888888888999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          273 KKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI  352 (1253)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~  352 (1253)
                      .+......+...+......+..  ++.+++|.+.+|.+|++.+|+++.++..+..|+..++..+..+.++.+|++||.++
T Consensus       463 ~~~~~~~~~~~~~~~~~p~l~~--~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~f  540 (1560)
T PTZ00243        463 RDVQLARVATSFVNNATPTLMI--AVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTF  540 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777776655544444333332  23467788889999999999998888788889999999999999999999999999


Q ss_pred             HhccCCCC----C--CC-------CC--C--------------CCC---------------------------CCCCCCc
Q 000851          353 IKENSHSS----E--RP-------GD--D--------------GIT---------------------------LPKLAGQ  376 (1253)
Q Consensus       353 l~~~~~~~----~--~~-------~~--~--------------~~~---------------------------~~~~~~~  376 (1253)
                      |+.++...    +  ..       ..  .              +..                           .....+.
T Consensus       541 L~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (1560)
T PTZ00243        541 LECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPS  620 (1560)
T ss_pred             HcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence            97643100    0  00       00  0              000                           0001134


Q ss_pred             EEEEEEEEECCC--------------------------------------CCCcccccceEEEeCCCEEEEEcCCCCcHH
Q 000851          377 IEFSEVCFAYPS--------------------------------------RPHMVFENLNFSVDAGKTFAFVGPSGSGKS  418 (1253)
Q Consensus       377 i~~~~v~f~y~~--------------------------------------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKS  418 (1253)
                      +.++|++|+++.                                      .++++|+|+||+|++||+++|+||||||||
T Consensus       621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKS  700 (1560)
T PTZ00243        621 VVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKS  700 (1560)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHH
Confidence            677887776431                                      123489999999999999999999999999


Q ss_pred             HHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHh
Q 000851          419 TIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE  498 (1253)
Q Consensus       419 Tl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~  498 (1253)
                      ||+++|+|+++|++|+|.++             ++||||+|+||+|++||+|||.++.+. +.+++.++.+.++++++++
T Consensus       701 TLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~~~~~~~~~~~~~l~~~l~  766 (1560)
T PTZ00243        701 TLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLA  766 (1560)
T ss_pred             HHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChh-hHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999864             469999999999999999999998753 4567788888899999999


Q ss_pred             cCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH-HHHHHcCCCeEEEEccCchhhh
Q 000851          499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR-ALEKIMSNRTTIVVAHRLSTVR  577 (1253)
Q Consensus       499 ~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~  577 (1253)
                      .+|+|++|.+|++|.+|||||||||+||||++.+|+|||||||||+||+++++.+.+ .+....+|+|+|+|||+++.+.
T Consensus       767 ~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~  846 (1560)
T PTZ00243        767 QLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP  846 (1560)
T ss_pred             HhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999999999999999998877765 4444557899999999999999


Q ss_pred             hcCEEEEEeCCEEEEeeCcchhhhcCchHHHHHHhhhcccCCCCC-cccC--CCCCCCC---CCCCC-CCCcccchhh--
Q 000851          578 DVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPS-SICY--SGSSRYS---SFRDF-PSSRRYDVEF--  648 (1253)
Q Consensus       578 ~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~~-~~~~--~~~~~~~---~~~~~-~~~~~~~~~~--  648 (1253)
                      .||+|++|++|++++.|+++++++. +.|..+............. ....  .......   ..... ..........  
T Consensus       847 ~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  925 (1560)
T PTZ00243        847 RADYVVALGDGRVEFSGSSADFMRT-SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDG  925 (1560)
T ss_pred             hCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999875 4677776542211110000 0000  0000000   00000 0000000000  


Q ss_pred             ---hh--hhhhhhccccCCCCCcchHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHH
Q 000851          649 ---ES--SKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVV  723 (1253)
Q Consensus       649 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  723 (1253)
                         ..  ....+.++......++..++.+++... .+.+.+ ..++..+.    .-....+..+|..+|.....  ....
T Consensus       926 ~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~-~~l~~~~~----~~~~~~~~~~wl~~w~~~~~--~~~~  997 (1560)
T PTZ00243        926 AALDAAAGRLMTREEKASGSVPWSTYVAYLRFCG-GLHAAG-FVLATFAV----TELVTVSSGVWLSMWSTRSF--KLSA  997 (1560)
T ss_pred             cccccccchhhhHHHHhcCcccHHHHHHHHHHhh-hHHHHH-HHHHHHHH----HHHHHHHHHHHHHHhccccc--CCCc
Confidence               00  000000000011112222222222211 111111 11111110    00111223444445543211  1112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHH
Q 000851          724 DQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADR  803 (1253)
Q Consensus       724 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~  803 (1253)
                      ..|..+|+++.++..+..++..+.....+.+...++|.++|++++++|++|||.  +++|+++||+++|++.++..++..
T Consensus       998 ~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di~~id~~l~~~ 1075 (1560)
T PTZ00243        998 ATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDIDILDNTLPMS 1075 (1560)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhHHHHHHHHHHH
Confidence            345666777666666666677777777778888999999999999999999984  899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHcchHHHH
Q 000851          804 LSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDY----NRAYSRATSVAREAIANIRTVA  879 (1253)
Q Consensus       804 l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~l~gi~tIr  879 (1253)
                      +..++..++.++++++++++.+|.+.   ++++|+.++...+.. +..+..++.    ....++..+++.|+++|++|||
T Consensus      1076 l~~~~~~~~~~i~~li~~~~~~p~~~---~~~i~~~~~~~~i~~-~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIr 1151 (1560)
T PTZ00243       1076 YLYLLQCLFSICSSILVTSASQPFVL---VALVPCGYLYYRLMQ-FYNSANREIRRIKSVAKSPVFTLLEEALQGSATIT 1151 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHH
Confidence            99999999999998888888887433   333444333322222 222233333    3455667899999999999999


Q ss_pred             HcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHH
Q 000851          880 AYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLI--KQKGSNFGDIMKSFMVLIITAL  957 (1253)
Q Consensus       880 a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv--~~~~~~~g~~~~~~~~~~~~~~  957 (1253)
                      +|+.++++.+++.+.++...+..+.......|.....+++..+..++..+++....  ..+..+.|.+..++.+......
T Consensus      1152 af~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~ 1231 (1560)
T PTZ00243       1152 AYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTA 1231 (1560)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988887777777777777666665555555554433  2344678877777777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCC-------------------------CCCc----ccccccCcEEE
Q 000851          958 AVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDD-------------------------PASK----EVTEIKGNIEL 1008 (1253)
Q Consensus       958 ~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~-------------------------~~~~----~~~~~~g~I~~ 1008 (1253)
                      ++..+...+.++..++.+++|+.++++..++++...                         +...    +.++..|.|+|
T Consensus      1232 ~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f 1311 (1560)
T PTZ00243       1232 TLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVF 1311 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEE
Confidence            889999999999999999999999986443221000                         0000    11224578999


Q ss_pred             EeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEc
Q 000851         1009 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQ 1088 (1253)
Q Consensus      1009 ~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~ 1088 (1253)
                      +||+|+|++. .++||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||++++++++|++|++||
T Consensus      1312 ~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVp 1390 (1560)
T PTZ00243       1312 EGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390 (1560)
T ss_pred             EEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEEC
Confidence            9999999743 346999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC-CCEEE
Q 000851         1089 QEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN-PSILL 1167 (1253)
Q Consensus      1089 Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~-p~ILl 1167 (1253)
                      |||+||+|||||||+++ ++++|+|+|+|+++++++++|.++|+||||.|||+|.+|||||||||||||||+++ |+|||
T Consensus      1391 Qdp~LF~gTIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILl 1469 (1560)
T PTZ00243       1391 QDPVLFDGTVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFIL 1469 (1560)
T ss_pred             CCCccccccHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            99999999999999986 47899999999999999999999999999999999999999999999999999996 89999


Q ss_pred             EecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHHHHhhc
Q 000851         1168 LDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1246 (1253)
Q Consensus      1168 LDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1246 (1253)
                      ||||||+||++||+.|+++|++.+++||+|+||||++++.+||+|+|||+|+|+|+|+|+||+++++|.|++|++.+..
T Consensus      1470 LDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243       1470 MDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred             EeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence            9999999999999999999999999999999999999999999999999999999999999998678999999987643

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=2.4e-143  Score=1442.13  Aligned_cols=1141  Identities=19%  Similarity=0.258  Sum_probs=849.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           60 FIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVL  139 (1253)
Q Consensus        60 ~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~  139 (1253)
                      ++..++....|++++.+++.+.... .. . ......++..++++.++..++.....+.....+.++...++..+|+|++
T Consensus        90 ~~~~~~~~~~P~ll~~li~~~~~~~-~~-~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L  166 (1490)
T TIGR01271        90 YFGEATKAVQPLLLGRIIASYDPFN-AP-E-REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL  166 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCC-CC-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455567899998863211 11 0 0011111222222223333444444455556677777777777899999


Q ss_pred             cCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          140 KKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTIT  219 (1253)
Q Consensus       140 ~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~  219 (1253)
                      +++...+++ .++|++++++++|++++.+++... ..++..++.+++++++++....+.+++.++++++++++..+++++
T Consensus       167 ~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~  244 (1490)
T TIGR01271       167 KLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK  244 (1490)
T ss_pred             hCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999987 589999999999999999987654 445566666677777776666667788888888888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          220 MSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLW  299 (1253)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1253)
                      +.+..++.++..++..+.+.|.++|||+||+|++|+.+.+++++.+++..+...+..........+..+..  ..+.++.
T Consensus       245 ~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  322 (1490)
T TIGR01271       245 MMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSG--FFVVFLS  322 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            99999999999999999999999999999999999999999999999888888877766544433332222  2344556


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEE
Q 000851          300 YAGILVRHGDTNGGKAFTTIINVIFSGFALG-QAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIE  378 (1253)
Q Consensus       300 ~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~  378 (1253)
                      +++|.+.++ ++++.+|+++.++..+..++. .++..+..+.++.+|++||.++|+.++... .  .  .  ......|+
T Consensus       323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~-~--~--~--~~~~~~i~  394 (1490)
T TIGR01271       323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT-L--E--Y--NLTTTEVE  394 (1490)
T ss_pred             HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-c--c--c--cCCCCceE
Confidence            677777655 688999988766655556654 577788899999999999999997653211 1  0  0  01123589


Q ss_pred             EEEEEEECCCC--------------------------------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q 000851          379 FSEVCFAYPSR--------------------------------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       379 ~~~v~f~y~~~--------------------------------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~  426 (1253)
                      ++|++|+|+..                                .+++|+|+||+|++||+++|+||||||||||+++|+|
T Consensus       395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G  474 (1490)
T TIGR01271       395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG  474 (1490)
T ss_pred             EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            99999999531                                1248999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccc
Q 000851          427 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT  506 (1253)
Q Consensus       427 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t  506 (1253)
                      +++|++|+|.++|             +|+||+|+||+|++||+|||.||.+ .+.+++.++++.+++.+++..+|+|++|
T Consensus       475 ~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t  540 (1490)
T TIGR01271       475 ELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKT  540 (1490)
T ss_pred             CCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccc
Confidence            9999999999998             4999999999999999999999975 4456677778888899999999999999


Q ss_pred             cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH-HHHHHcCCCeEEEEccCchhhhhcCEEEEE
Q 000851          507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR-ALEKIMSNRTTIVVAHRLSTVRDVDTIMVL  585 (1253)
Q Consensus       507 ~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~vl  585 (1253)
                      .+|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+ .+.++.+++|+|+|||+++.+..||+|++|
T Consensus       541 ~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l  620 (1490)
T TIGR01271       541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLL  620 (1490)
T ss_pred             cccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEE
Confidence            9999999999999999999999999999999999999999999999987 467777899999999999999999999999


Q ss_pred             eCCEEEEeeCcchhhhcCchHHHHHHhhhc------c---------------c-CC----CCCc------ccCCC--C--
Q 000851          586 KNGQVVESGTHVDLISKGGEYAALVNLQSS------E---------------H-LS----NPSS------ICYSG--S--  629 (1253)
Q Consensus       586 ~~G~i~~~g~~~~l~~~~~~y~~~~~~~~~------~---------------~-~~----~~~~------~~~~~--~--  629 (1253)
                      ++|+|++.|+++++.+.++.|...+.....      .               . ..    .+..      .....  .  
T Consensus       621 ~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (1490)
T TIGR01271       621 HEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKR  700 (1490)
T ss_pred             ECCEEEEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999877777666531000      0               0 00    0000      00000  0  


Q ss_pred             ---------------------------CCCCC-CCCCC-----------------C-Cc-----------c---------
Q 000851          630 ---------------------------SRYSS-FRDFP-----------------S-SR-----------R---------  643 (1253)
Q Consensus       630 ---------------------------~~~~~-~~~~~-----------------~-~~-----------~---------  643 (1253)
                                                 ...+. ..+..                 . ..           .         
T Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (1490)
T TIGR01271       701 KQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMT  780 (1490)
T ss_pred             cccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccc
Confidence                                       00000 00000                 0 00           0         


Q ss_pred             cc--hhh-------hhh------------h---------hhh--------------------hccccCCCCCcchHHHHH
Q 000851          644 YD--VEF-------ESS------------K---------RRE--------------------LQSSDQSFAPSPSIWELL  673 (1253)
Q Consensus       644 ~~--~~~-------~~~------------~---------~~~--------------------~~~~~~~~~~~~~~~~~~  673 (1253)
                      ..  .+.       ...            .         ..+                    +++.......+..+++++
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~  860 (1490)
T TIGR01271       781 HSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYI  860 (1490)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHH
Confidence            00  000       000            0         000                    000000001111122222


Q ss_pred             HHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCc--------h-h-H---------HhHHHHH-HHHHHHH
Q 000851          674 KLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD--------S-Q-I---------KRVVDQV-ALIFVGL  733 (1253)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~-~---------~~~~~~~-~~~~~~l  733 (1253)
                      +. .+.+..+++.+++.++..     ....+.++|..+|....        . . .         ......| .++|+++
T Consensus       861 ~~-~g~~~~~~~~~~~~~~~~-----~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  934 (1490)
T TIGR01271       861 TT-NRNLVFVLIFCLVIFLAE-----VAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGT  934 (1490)
T ss_pred             Hh-cCcHHHHHHHHHHHHHHH-----HHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHH
Confidence            21 111122111111111111     22233344444443210        0 0 0         0011122 3445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          734 AVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVAL  813 (1253)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~  813 (1253)
                      ++...++.+++.+++...+.+.+.++|.+++++++++|++||+.  +++|+++|||++|++.++..++..+..++..++.
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~ 1012 (1490)
T TIGR01271       935 ADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLI 1012 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556677788888999999999999999999999999999985  8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHcchHHHHHcCcHHHHHH
Q 000851          814 TVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDY----NRAYSRATSVAREAIANIRTVAAYGIEKRISI  889 (1253)
Q Consensus       814 ~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~  889 (1253)
                      +++.++++++++|.+++   +++|++++.+++...+ .+..++.    ....+...+++.|+++|+.|||+||+++++.+
T Consensus      1013 ~i~~l~~i~~~~p~l~l---~~~~l~~~~~~~~~~~-~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~ 1088 (1490)
T TIGR01271      1013 VLGAIFVVSVLQPYIFI---AAIPVAVIFIMLRAYF-LRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFET 1088 (1490)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHH
Confidence            99999888888887644   3444433333222222 2223333    33445667999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          890 QFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDI  969 (1253)
Q Consensus       890 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  969 (1253)
                      ++.+..+...+..+.......|......++..+......+++   +.....+.|.+..++.+......++..+...+.++
T Consensus      1089 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~l 1165 (1490)
T TIGR01271      1089 LFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDV 1165 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999987776666655555555444443332222211111   11122344444444555555566677777788899


Q ss_pred             HHHHHHHHHHHHHhcccccCCCCCC----------------CCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeC
Q 000851          970 VKGSQALGPVFGILYRKTAIQPDDP----------------ASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSA 1033 (1253)
Q Consensus       970 ~~~~~a~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~ 1033 (1253)
                      ...+.+++|+.++.+.+++.....+                ..++.+|..|.|+|+||+|+|+.. .++||+|+||+|+|
T Consensus      1166 e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~ 1244 (1490)
T TIGR01271      1166 DGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEG 1244 (1490)
T ss_pred             HHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcC
Confidence            9999999999999866544321100                001124567899999999999743 46799999999999


Q ss_pred             CcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHH
Q 000851         1034 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIE 1113 (1253)
Q Consensus      1034 Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~e 1113 (1253)
                      ||+||||||||||||||+++|+|+|+ ++|+|+|||+|+++++++++|++|+||||||+||+||||+||++.. +.+|++
T Consensus      1245 GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdee 1322 (1490)
T TIGR01271      1245 GQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEE 1322 (1490)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHH
Confidence            99999999999999999999999998 7999999999999999999999999999999999999999999864 679999


Q ss_pred             HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCC
Q 000851         1114 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG 1193 (1253)
Q Consensus      1114 i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~ 1193 (1253)
                      +|+||++++++++|.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|++.|++.+++
T Consensus      1323 i~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~ 1402 (1490)
T TIGR01271      1323 IWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSN 1402 (1490)
T ss_pred             HHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHHHHhhccC
Q 000851         1194 RTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1248 (1253)
Q Consensus      1194 ~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~~~~~~~ 1248 (1253)
                      ||||+||||++++.+||+|+||++|+|+|+|+|++|++ ++|.|++|++.+.+..
T Consensus      1403 ~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~~~~ 1456 (1490)
T TIGR01271      1403 CTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAADRLK 1456 (1490)
T ss_pred             CEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhChhc
Confidence            99999999999999999999999999999999999998 6899999998765433

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-113  Score=1004.28  Aligned_cols=572  Identities=40%  Similarity=0.618  Sum_probs=538.2

Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000851           35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      ..++|++.|+++.++ .+..+.++.++.+....+.|.++|+++|.+....    +....+...+..+..+.++..+++++
T Consensus       133 ~~~~rl~~l~~~~~~-~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~----~~~~~~~~~~~~l~~l~~~~a~~~~~  207 (716)
T KOG0058|consen  133 TLLKRLLGLLKPEWK-WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD----DSADALKRACTILLGLFLIGALANAI  207 (716)
T ss_pred             hHHHHHHHHhchhHH-HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368899999998754 5667788888888888888999999999876511    11344555666777778888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      +.+++.++++++..++|.++|+++++++++|||. +++||++||+++|+..+.+.++..+...+++.++.++++++|+++
T Consensus       208 r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~  286 (716)
T KOG0058|consen  208 RGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL  286 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence            9999999999999999999999999999999998 599999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      ||+|+++.++.+|++.++..+++++.++..++.|++.++++.+.+|.+++|||||+|+.|+.|.+||.+..++..+...|
T Consensus       287 S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k  366 (716)
T KOG0058|consen  287 SWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKK  366 (716)
T ss_pred             hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK  354 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  354 (1253)
                      .+...+.+.+...+..++..+.++|||++++..|.||.|++.+|++|......++..+...++.++++..|.+|+||++|
T Consensus       367 ~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~d  446 (716)
T KOG0058|consen  367 EAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMD  446 (716)
T ss_pred             HHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCC-CCCCcEEEEEEEEECCCCCCc-ccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCC
Q 000851          355 ENSHSSERPGDDGITLP-KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS  432 (1253)
Q Consensus       355 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~-~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~  432 (1253)
                      ++|..+ .  . +...| ..+|.|+|+||+|+||.+|+. ||+|+||+|+|||+||+||||||||||+++||.|||+|++
T Consensus       447 r~P~i~-~--~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts  522 (716)
T KOG0058|consen  447 RKPRIP-L--T-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS  522 (716)
T ss_pred             cCCCCC-C--C-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence            999876 2  2 33222 578999999999999998764 9999999999999999999999999999999999999999


Q ss_pred             cEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCC
Q 000851          433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG  512 (1253)
Q Consensus       433 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g  512 (1253)
                      |+|++||+||+++++.+||++||+|.|||.||++||+|||+||.+++++|++.+||++|++|+||.++|+||||.|||+|
T Consensus       523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG  602 (716)
T KOG0058|consen  523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG  602 (716)
T ss_pred             CeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 000851          513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE  592 (1253)
Q Consensus       513 ~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~  592 (1253)
                      .+|||||||||||||||++||.||||||||||||+++|..|+++|.+.++++|||+|||||+|+++||+|+|+++|+++|
T Consensus       603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E  682 (716)
T KOG0058|consen  603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVE  682 (716)
T ss_pred             ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCcchhhhcC-chHHHHHHhhhcc
Q 000851          593 SGTHVDLISKG-GEYAALVNLQSSE  616 (1253)
Q Consensus       593 ~g~~~~l~~~~-~~y~~~~~~~~~~  616 (1253)
                      .|+|+||++++ |.|+++++.|...
T Consensus       683 ~G~h~eLl~~~~gly~~Lv~~q~~~  707 (716)
T KOG0058|consen  683 MGTHDELLSKPNGLYAKLVQRQLDS  707 (716)
T ss_pred             cccHHHHhhCcccHHHHHHHHhccc
Confidence            99999999997 8999999887644

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.2e-110  Score=976.57  Aligned_cols=576  Identities=36%  Similarity=0.592  Sum_probs=544.6

Q ss_pred             hHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          668 SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF  747 (1253)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  747 (1253)
                      .+++++.+.++.|+++..+.++..+......+.+...+++++.++....  ...........+.++.+...++.+++.++
T Consensus       134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~~~~r~~~  211 (716)
T KOG0058|consen  134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD--SADALKRACTILLGLFLIGALANAIRGGL  211 (716)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5779999999999999999999888888777778888888888776111  12334455666777788888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000851          748 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR  827 (1253)
Q Consensus       748 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  827 (1253)
                      +.++++++..++|..+|+++++++++|||.  |.+|++++|++.|...+.+.++..+...+.+.+..++++.+|++++|.
T Consensus       212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~  289 (716)
T KOG0058|consen  212 LQYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWR  289 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence            999999999999999999999999999995  889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHH
Q 000851          828 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGH  907 (1253)
Q Consensus       828 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~  907 (1253)
                      |+++.++.+|++++...++.+++++.+++.+++.+++++...|.+++++|||+|+.|++..++|.+.+++..+...|...
T Consensus       290 Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~  369 (716)
T KOG0058|consen  290 LTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV  369 (716)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000851          908 ISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKT  987 (1253)
Q Consensus       908 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~  987 (1253)
                      ..+++++..++...+....++|||+.++..|.++.|++.+++++......++..+...+.+++++..|.+|++++++++|
T Consensus       370 a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P  449 (716)
T KOG0058|consen  370 AYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKP  449 (716)
T ss_pred             HhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEE
Q 000851          988 AIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067 (1253)
Q Consensus       988 ~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~i 1067 (1253)
                      ..+++ ....+. ..+|.|+|+||+|+||+||+.|||+|+||+|+|||+||+||||||||||++++|+|||+|++|+|++
T Consensus       450 ~i~~~-G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill  527 (716)
T KOG0058|consen  450 RIPLT-GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL  527 (716)
T ss_pred             CCCCC-Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence            87765 222222 5789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000851         1068 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147 (1253)
Q Consensus      1068 dG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSg 1147 (1253)
                      ||+||+++++++||++||+|.|||+||++||+|||.||.++++||||.+|+++|++|+||.++|+||||.|||+|.+|||
T Consensus       528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG  607 (716)
T KOG0058|consen  528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG  607 (716)
T ss_pred             CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChh
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      ||||||||||||+|||+||||||||||||+++|..||++|.+..+++|||+|||||+||++||+|+|+++|+|+|.|+|+
T Consensus       608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~  687 (716)
T KOG0058|consen  608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHD  687 (716)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccchHHHHHHHhhccCC
Q 000851         1228 QLLRKENGIYKQLIRLQQDKNP 1249 (1253)
Q Consensus      1228 eLl~~~~g~y~~L~~~~~~~~~ 1249 (1253)
                      ||+++++|.|++|++.|....+
T Consensus       688 eLl~~~~gly~~Lv~~q~~~~~  709 (716)
T KOG0058|consen  688 ELLSKPNGLYAKLVQRQLDSGE  709 (716)
T ss_pred             HHhhCcccHHHHHHHHhcccCC
Confidence            9999888999999999875443

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.9e-106  Score=993.63  Aligned_cols=578  Identities=43%  Similarity=0.721  Sum_probs=544.1

Q ss_pred             cchHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 000851           33 QSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSA  112 (1253)
Q Consensus        33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (1253)
                      .+.++++++++.+|. |.++++|++++++.|...|++.++++.++..+....  ..........+++++++++++.+++.
T Consensus       648 ~~~s~~~i~k~~~pe-~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~--~~~~~~~~~~~al~f~~l~~~~~i~~  724 (1228)
T KOG0055|consen  648 EKVSFWRIFKLNKPE-WPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPD--DDELKREVRAWALIFLGLGIVSGITN  724 (1228)
T ss_pred             ccccHHHHHHhccch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456799999999985 667899999999999999999999999999876322  11222222337888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          113 WIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGF  192 (1253)
Q Consensus       113 ~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (1253)
                      +++.+++...++++..|+|...|+++++++++|||...++|.|.+|+.+|...++..+++.+..+++++..+++++++.|
T Consensus       725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf  804 (1228)
T KOG0055|consen  725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF  804 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999866669999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000851          193 TSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG  272 (1253)
Q Consensus       193 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~  272 (1253)
                      +++|+|+++++++.|++++..+...+.+.....+..++..+.+..+.|+++|||||++|+.|+++.+.|.+..+...+..
T Consensus       805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~  884 (1228)
T KOG0055|consen  805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS  884 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          273 KKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI  352 (1253)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~  352 (1253)
                      .|.+.+.++..++.+.+.++.+++.+|||++++.+|.+++.+++.+++.+.+....+++.....+++.+|+.|+.+||++
T Consensus       885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i  964 (1228)
T KOG0055|consen  885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI  964 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888888888999999999999999999999999


Q ss_pred             HhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCc-ccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCC
Q 000851          353 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT  431 (1253)
Q Consensus       353 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~-~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~  431 (1253)
                      +|++|.++ ++.+.+...++.+|+|+|+||+|+||.+|+. ||+|+||+|++|+++||||||||||||++.||.|||+|+
T Consensus       965 ~dr~~~i~-~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~ 1043 (1228)
T KOG0055|consen  965 LDRKPTID-PDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD 1043 (1228)
T ss_pred             hcCCCCCC-CCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            99998776 3223344456788999999999999998876 999999999999999999999999999999999999999


Q ss_pred             CcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCC
Q 000851          432 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG  511 (1253)
Q Consensus       432 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~  511 (1253)
                      +|.|.|||+|+++++++|||++||.|+|||.||++||||||+||.+.++++|+.+||+.|++|+||.+||+||||.|||+
T Consensus      1044 ~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGer 1123 (1228)
T KOG0055|consen 1044 AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGER 1123 (1228)
T ss_pred             CCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcc
Confidence            99999999999999999999999999999999999999999999666899999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEE
Q 000851          512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV  591 (1253)
Q Consensus       512 g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~  591 (1253)
                      |.+||||||||||||||++|||+||||||+|||||.++|+.+|++|++.+.|||+|+|||||+|+++||.|+|+++|+|+
T Consensus      1124 G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1124 GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVV 1203 (1228)
T ss_pred             cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCcchhhhcCchHHHHHHhhh
Q 000851          592 ESGTHVDLISKGGEYAALVNLQS  614 (1253)
Q Consensus       592 ~~g~~~~l~~~~~~y~~~~~~~~  614 (1253)
                      |+|||++|++++|.|++|+..|.
T Consensus      1204 E~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1204 EQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred             ecccHHHHHhCCCchHHHhhhcc
Confidence            99999999999999999998764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=3.7e-95  Score=893.02  Aligned_cols=570  Identities=32%  Similarity=0.463  Sum_probs=520.9

Q ss_pred             chHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000851           34 SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW  113 (1253)
Q Consensus        34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (1253)
                      +..+.+++..+.++++.+ .-.++.+++..+.....|++++.++|.+....     ..+.+...++.++++++...++.+
T Consensus       139 ~~~~~~f~~~~~~~~~~l-~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~-----~~~tL~vl~ig~~~~~l~~~~l~~  212 (709)
T COG2274         139 PFGLSWFIPLLFKYRRLL-FEVLLASLLLQLLALATPLFSQIVIDKVLPDA-----SRSTLTVLAIGLLLAALFEALLRL  212 (709)
T ss_pred             ccchHhHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----chhHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666666665443 33344445555555555667899999876432     123444555666677777888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT  193 (1253)
Q Consensus       114 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1253)
                      ++.++..+++.|+..++-.++|+|++++|+.||++ +++|++++|+. |.++|+++++..+...+.++..+++.+++|++
T Consensus       213 lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~-r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~  290 (709)
T COG2274         213 LRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFL  290 (709)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC-CChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999997 59999999996 99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000851          194 SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK  273 (1253)
Q Consensus       194 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~  273 (1253)
                      ++|.|++++++.+|++++...++.+.+++..++..+..++.++.+.|+++|+++||+.+.|.++..+|++...+..+.+.
T Consensus       291 ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~  370 (709)
T COG2274         291 YSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF  370 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          274 KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISII  353 (1253)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l  353 (1253)
                      +..........+..++..+..++++|+|+++|.+|++|+|+++++.+.......|+.++...+..++++..+.+|+.+++
T Consensus       371 ~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil  450 (709)
T COG2274         371 KTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL  450 (709)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999988777788899999999999999999999999999


Q ss_pred             hccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCc
Q 000851          354 KENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG  433 (1253)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G  433 (1253)
                      +.++|.+ . +......++..|+|+|+||+|+|+.++.++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|
T Consensus       451 ~~~~E~~-~-~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G  528 (709)
T COG2274         451 DTPPEQE-G-DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG  528 (709)
T ss_pred             cCCcccc-c-ccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            9988754 1 1112345667899999999999987655699999999999999999999999999999999999999999


Q ss_pred             EEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCC
Q 000851          434 KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT  513 (1253)
Q Consensus       434 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~  513 (1253)
                      +|++||.|+.++++.++|++||||+||+.||+|||+|||+++.|++++|++.+||+.+++|+||.++|.||+|.+||+|.
T Consensus       529 ~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~  608 (709)
T COG2274         529 RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA  608 (709)
T ss_pred             eEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000851          514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES  593 (1253)
Q Consensus       514 ~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~  593 (1253)
                      +|||||||||+|||||++||+||||||||||||++||+.|.+.|.++.+|+|+|+||||++++++||||+||++|+|+++
T Consensus       609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~  688 (709)
T COG2274         609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ  688 (709)
T ss_pred             CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCcchhhhcCchHHHHHHhh
Q 000851          594 GTHVDLISKGGEYAALVNLQ  613 (1253)
Q Consensus       594 g~~~~l~~~~~~y~~~~~~~  613 (1253)
                      |+|+||++.+|.|+++|..|
T Consensus       689 gs~~ell~~~g~y~~l~~~q  708 (709)
T COG2274         689 GSHEELLAQGGLYARLYQQQ  708 (709)
T ss_pred             CCHHHHHHhcChHHHHHhcc
Confidence            99999999999999998765

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=7e-93  Score=872.81  Aligned_cols=565  Identities=32%  Similarity=0.512  Sum_probs=513.3

Q ss_pred             hHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          668 SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF  747 (1253)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  747 (1253)
                      +++..+...+.....+++..++..+.++..|++...+.   +.....   ............++++++...++.+++.++
T Consensus       144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~vi---D~Vl~~---~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~  217 (709)
T COG2274         144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVI---DKVLPD---ASRSTLTVLAIGLLLAALFEALLRLLRTYL  217 (709)
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhcc---CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444443444444455555555566666666544333   222211   112334455666777788888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000851          748 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR  827 (1253)
Q Consensus       748 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  827 (1253)
                      ....+.++...+-..+|+|++++|++||..  +++|++++|+ +|++.++++++......+.++.+.++.++++++++|+
T Consensus       218 ~~~~~~rld~~l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~  294 (709)
T COG2274         218 IAHLGKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWK  294 (709)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcCcHHHccC--CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999974  7999999998 5999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHH
Q 000851          828 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGH  907 (1253)
Q Consensus       828 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~  907 (1253)
                      +++++++.+|++++..++..+.+++..++..+..++..+++.|++.|++|||+.+.|.++..+|.+.+.+..+..++..+
T Consensus       295 L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~  374 (709)
T COG2274         295 LTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK  374 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000851          908 ISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKT  987 (1253)
Q Consensus       908 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~  987 (1253)
                      ...+...+.+++..+..++++|+|+.+|..+++|+|.++++.+....+..++..+.+.+.++.....+.+|+.++++.++
T Consensus       375 ~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~  454 (709)
T COG2274         375 LALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP  454 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEE
Q 000851          988 AIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067 (1253)
Q Consensus       988 ~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~i 1067 (1253)
                      +.+.+.. ....++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|+|+|+|++|+|++
T Consensus       455 E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~  532 (709)
T COG2274         455 EQEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL  532 (709)
T ss_pred             ccccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            7554332 12345678999999999999854 347999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000851         1068 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147 (1253)
Q Consensus      1068 dG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSg 1147 (1253)
                      ||+|++++++.++|++|||||||++||+|||||||++++|+.++||+++||+.|++|+||.++|.||||+|||+|.+|||
T Consensus       533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSG  612 (709)
T COG2274         533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSG  612 (709)
T ss_pred             CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChh
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      ||||||+|||||++||+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|||+|+|+|+
T Consensus       613 GQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~  692 (709)
T COG2274         613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHE  692 (709)
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccchHHHHHHHh
Q 000851         1228 QLLRKENGIYKQLIRLQ 1244 (1253)
Q Consensus      1228 eLl~~~~g~y~~L~~~~ 1244 (1253)
                      ||++. +|.|+++|+.|
T Consensus       693 ell~~-~g~y~~l~~~q  708 (709)
T COG2274         693 ELLAQ-GGLYARLYQQQ  708 (709)
T ss_pred             HHHHh-cChHHHHHhcc
Confidence            99994 99999999866

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.2e-89  Score=860.55  Aligned_cols=570  Identities=22%  Similarity=0.284  Sum_probs=493.7

Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000851           35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      ..+++++++.+++++ .+++++++.++.+++.+..|++++.++|.+.....+    ...+..+...++++.++..++.++
T Consensus         8 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   82 (588)
T PRK11174          8 ELTRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP----REALLPPFILLILLFVLRALLAWL   82 (588)
T ss_pred             hhhHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788899988755 456777888888888888999999999976421101    111222233344445556777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      ..++..+.+.++..++|.++|+|++++|+++|++ .++|++++|+++|++.+++++.+.+..++..++.+++++++++++
T Consensus        83 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (588)
T PRK11174         83 RERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPI  161 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999997 589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      +|++++++++++|+++++...+.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus       162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  241 (588)
T PRK11174        162 NWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTME  241 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKA------FT---TIINVIFSGFALGQAAPNLAAIAKGKAA  345 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~------~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~a  345 (1253)
                      ..+..+...++..++..+..+++++++++.+. |.+|+|++      +.   ++.+......|+..+...+..++++.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~  320 (588)
T PRK11174        242 VLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGA  320 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777777776666666666566566666554 88888864      11   1122233456888999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHH
Q 000851          346 AANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ  425 (1253)
Q Consensus       346 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~  425 (1253)
                      ++|+.++++.+++.+ . ...........+.|+|+||+|.|+++ +++|+|+||+|+|||++|||||||||||||+++|+
T Consensus       321 ~~ri~~~l~~~~~~~-~-~~~~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~  397 (588)
T PRK11174        321 AESLVTFLETPLAHP-Q-QGEKELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL  397 (588)
T ss_pred             HHHHHHHHcCCCccc-C-CCccccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            999999998765322 1 11101111123579999999877543 45999999999999999999999999999999999


Q ss_pred             ccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCcc
Q 000851          426 RLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQ  505 (1253)
Q Consensus       426 ~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~  505 (1253)
                      |+| |++|+|++||+|+++++.+++|++|+||+|||+||++||+|||++|+|+++++++++||+.+++++|++++|+|||
T Consensus       398 g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~d  476 (588)
T PRK11174        398 GFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLD  476 (588)
T ss_pred             cCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccc
Confidence            999 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEE
Q 000851          506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL  585 (1253)
Q Consensus       506 t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl  585 (1253)
                      |.+||+|.+|||||||||+||||+++||+|||||||||+||+++|+.|++.|+++.+++|+|+||||++++++||+|+||
T Consensus       477 T~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl  556 (588)
T PRK11174        477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVM  556 (588)
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999998999999999999999999999999


Q ss_pred             eCCEEEEeeCcchhhhcCchHHHHHHhhhc
Q 000851          586 KNGQVVESGTHVDLISKGGEYAALVNLQSS  615 (1253)
Q Consensus       586 ~~G~i~~~g~~~~l~~~~~~y~~~~~~~~~  615 (1253)
                      ++|+|+|+|+|+||++++|.|++++..|..
T Consensus       557 ~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~  586 (588)
T PRK11174        557 QDGQIVQQGDYAELSQAGGLFATLLAHRQE  586 (588)
T ss_pred             eCCeEeecCCHHHHHhcchHHHHHHHHhhc
Confidence            999999999999999999999999987654

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=8.4e-89  Score=906.72  Aligned_cols=569  Identities=29%  Similarity=0.478  Sum_probs=493.4

Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000851           36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIG  115 (1253)
Q Consensus        36 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (1253)
                      .+.+++++.+++++ .++++++++++.+++.|.+|++++.++|.+....    ........+++++++++++.+++.+++
T Consensus       812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~l~~~~~~i~~~~~~~l~  886 (1466)
T PTZ00265        812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA----NLEANSNKYSLYILVIAIAMFISETLK  886 (1466)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777766654 3677788888999999999999999999764211    111123345566677777788889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          116 VAFWMQTGERQTARLRLKYLQSVLKKDMSFFDT-EARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       116 ~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~-~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      .++..++++++..++|.++|++++++|++|||+ ++++|++++|+++|++.+++++...+..++..++.+++++++++++
T Consensus       887 ~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~  966 (1466)
T PTZ00265        887 NYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF  966 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999985 3479999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLS-EK-----------------GEAAYGEAGKVAEEIISQVRAVYAFVGEAK  256 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~  256 (1253)
                      +|.+++++++++|++   ...+.++.+... ++                 .++..++.+..++|.++|+++||+|+.|++
T Consensus       967 ~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 1043 (1466)
T PTZ00265        967 CPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDY 1043 (1466)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHH
Confidence            999988766444333   333443332211 11                 234467788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          257 AIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNL  336 (1253)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~  336 (1253)
                      +.++|.+..+...+...+.....++..++..++.++..++++|+|++++.+|.+|+|++++++.+++....++..+...+
T Consensus      1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~ 1123 (1466)
T PTZ00265       1044 FCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLK 1123 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888889999999998888889999999999999999999999988766665555678888899


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC---CCCCCCcEEEEEEEEECCCCC-CcccccceEEEeCCCEEEEEcC
Q 000851          337 AAIAKGKAAAANIISIIKENSHSSERPGDDGIT---LPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGP  412 (1253)
Q Consensus       337 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~~~-~~~l~~i~~~i~~g~~~~ivG~  412 (1253)
                      ..++++.++++|++++++.+++.+.. ...+..   ++...|.|+|+||+|+||+++ .++|+|+||+|+||+++|||||
T Consensus      1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~-~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~ 1202 (1466)
T PTZ00265       1124 GDSENAKLSFEKYYPLIIRKSNIDVR-DNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGE 1202 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCcCCCC-CCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECC
Confidence            99999999999999999876643211 111111   123457899999999998654 3599999999999999999999


Q ss_pred             CCCcHHHHHHHHHccCCC------------------------------------------------------CCcEEEEC
Q 000851          413 SGSGKSTIISMVQRLYEP------------------------------------------------------TSGKILLD  438 (1253)
Q Consensus       413 sGsGKSTl~~ll~~~~~~------------------------------------------------------~~G~i~~~  438 (1253)
                      ||||||||+++|+|+|+|                                                      ++|+|++|
T Consensus      1203 SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~id 1282 (1466)
T PTZ00265       1203 TGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282 (1466)
T ss_pred             CCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEEC
Confidence            999999999999999999                                                      69999999


Q ss_pred             CeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChH
Q 000851          439 GHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG  518 (1253)
Q Consensus       439 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG  518 (1253)
                      |+|+++++.+++|++||||+|||+||++||+|||+||+|+++++++++||+.+++++||.+||+||||.|||+|.+||||
T Consensus      1283 G~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGG 1362 (1466)
T PTZ00265       1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGG 1362 (1466)
T ss_pred             CEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhhcCEEEEEeC----CEEE-
Q 000851          519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKN----GQVV-  591 (1253)
Q Consensus       519 q~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~----G~i~-  591 (1253)
                      |||||||||||+++|+||||||||||||+++|+.|+++|+++.  +++|+|+||||++++++||+|+||++    |+++ 
T Consensus      1363 QkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~ 1442 (1466)
T PTZ00265       1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQ 1442 (1466)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEE
Confidence            9999999999999999999999999999999999999999984  68999999999999999999999999    9955 


Q ss_pred             EeeCcchhhh-cCchHHHHHHhh
Q 000851          592 ESGTHVDLIS-KGGEYAALVNLQ  613 (1253)
Q Consensus       592 ~~g~~~~l~~-~~~~y~~~~~~~  613 (1253)
                      |+|+|+||++ ++|.|++++..|
T Consensus      1443 e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265       1443 AHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred             EecCHHHHHhcCCChHHHHHhhc
Confidence            8999999998 599999998765

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=2.4e-88  Score=843.75  Aligned_cols=562  Identities=35%  Similarity=0.551  Sum_probs=507.4

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGV  116 (1253)
Q Consensus        37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (1253)
                      +++++++.+  ++ .+.++.++.++..+.....|++++.++|.+...       .........+++++.++..++.++..
T Consensus         4 ~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~   73 (567)
T COG1132           4 LRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-------LGELLELLLLLLLLALLGGVLRALQS   73 (567)
T ss_pred             HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666655  34 566677777777788888888999999986511       12223333444455556677778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          117 AFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVW  196 (1253)
Q Consensus       117 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (1253)
                      ++..+.+.++..++|.++|++++++|+++|++ .++|++++|+++|++.++..+.+....+...+..+++.+++++..+|
T Consensus        74 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (567)
T COG1132          74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSW  152 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCc-CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            88888889999999999999999999999998 58999999999999999999998866666678889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          197 QLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSG  276 (1253)
Q Consensus       197 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~  276 (1253)
                      ++++++++..|++.++..++.++.++..++.++..++.++.+.|.++|+++||+|+.++.+.++|++..++..+...+..
T Consensus       153 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~  232 (567)
T COG1132         153 RLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS  232 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988899999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000851          277 VAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN  356 (1253)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  356 (1253)
                      ...+...++..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++++..+++|++++++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~  312 (567)
T COG1132         233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEE  312 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88888888889999999999999999999999999999999988888888899999999999999999999999999987


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEE
Q 000851          357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL  436 (1253)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~  436 (1253)
                      ++..+.  +..  .....++|+|+||+|+|++ ++++|+|+||+++|||++||||||||||||++++|+|+|+|++|+|+
T Consensus       313 ~~~~~~--~~~--~~~~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~  387 (567)
T COG1132         313 PEVEDP--PDP--LKDTIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL  387 (567)
T ss_pred             ccccCC--CCC--CCCCCCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence            654311  111  2234578999999999984 23599999999999999999999999999999999999999999999


Q ss_pred             ECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCC
Q 000851          437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS  516 (1253)
Q Consensus       437 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS  516 (1253)
                      +||+|+++++.+++|++|++|||||+||++||+|||.+|+|++++|++++||+.++++|||+++|+||||.+||+|.+||
T Consensus       388 idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LS  467 (567)
T COG1132         388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLS  467 (567)
T ss_pred             ECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCc
Q 000851          517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH  596 (1253)
Q Consensus       517 gGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~  596 (1253)
                      |||||||+||||+++||||||||||||+||++||+.+++++.++.++||+|+||||++++++||+|+||++|+|+|.|+|
T Consensus       468 gGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h  547 (567)
T COG1132         468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTH  547 (567)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCH
Confidence            99999999999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             chhhhcCchHHHHHHhhh
Q 000851          597 VDLISKGGEYAALVNLQS  614 (1253)
Q Consensus       597 ~~l~~~~~~y~~~~~~~~  614 (1253)
                      +||++++|.|+++|..|.
T Consensus       548 ~eLl~~~g~y~~l~~~~~  565 (567)
T COG1132         548 EELLAKGGLYARLYQAQG  565 (567)
T ss_pred             HHHHHcCCHHHHHHHHhh
Confidence            999999999999998764

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=4.4e-87  Score=848.32  Aligned_cols=564  Identities=34%  Similarity=0.502  Sum_probs=502.8

Q ss_pred             chHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000851           34 SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW  113 (1253)
Q Consensus        34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (1253)
                      ...+++++++.+++++ .+++++++.++.+++....|++++.++|.+.... +    ...+.....+++++.++..++.+
T Consensus       146 ~~~~~~l~~~~~~~~~-~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~  219 (711)
T TIGR00958       146 ADLLFRLLGLSGRDWP-WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK-G----PPALASAIFFMCLLSIASSVSAG  219 (711)
T ss_pred             hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888898887644 4566777777888888888999999999875321 1    11222222334444455667778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT  193 (1253)
Q Consensus       114 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1253)
                      ++.+++.+.+.++..++|.++|++++++|++||++ .++|++++|+++|++.+++.+...+..++.++..+++.++++++
T Consensus       220 l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~  298 (711)
T TIGR00958       220 LRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW  298 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999998 59999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000851          194 SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK  273 (1253)
Q Consensus       194 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~  273 (1253)
                      ++|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...
T Consensus       299 ~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~  378 (711)
T TIGR00958       299 LSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNK  378 (711)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          274 KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISII  353 (1253)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l  353 (1253)
                      +.....+....+..++..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..++++.++.+|+++++
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l  458 (711)
T TIGR00958       379 RKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYL  458 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88777776666666777777788889999999999999999999988888888999999999999999999999999999


Q ss_pred             hccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCC
Q 000851          354 KENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS  432 (1253)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~  432 (1253)
                      +.+++.+ .  .....+.+..+.|+|+||+|+||+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++
T Consensus       459 ~~~~~~~-~--~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~  535 (711)
T TIGR00958       459 DRKPNIP-L--TGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG  535 (711)
T ss_pred             CCCCCCC-C--CCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence            8766533 1  11111223456899999999998653 459999999999999999999999999999999999999999


Q ss_pred             cEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCC
Q 000851          433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG  512 (1253)
Q Consensus       433 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g  512 (1253)
                      |+|++||+|+++++.+++|++|+||+|||++|++||+|||.+|.++.+++++.++++.++++++++++|+||||.+||+|
T Consensus       536 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G  615 (711)
T TIGR00958       536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG  615 (711)
T ss_pred             CEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence            99999999999999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 000851          513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE  592 (1253)
Q Consensus       513 ~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~  592 (1253)
                      .+|||||||||+||||++++|+|||||||||+||+++|+.+++  ....+++|+|+||||+++++.||+|+||++|+|+|
T Consensus       616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive  693 (711)
T TIGR00958       616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVE  693 (711)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999998  33357899999999999999999999999999999


Q ss_pred             eeCcchhhhcCchHHHH
Q 000851          593 SGTHVDLISKGGEYAAL  609 (1253)
Q Consensus       593 ~g~~~~l~~~~~~y~~~  609 (1253)
                      +|+|+||++++|.|+++
T Consensus       694 ~Gt~~eL~~~~~~y~~l  710 (711)
T TIGR00958       694 MGTHKQLMEDQGCYKHL  710 (711)
T ss_pred             eeCHHHHHhCCCchHhc
Confidence            99999999999999875

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=6e-86  Score=820.29  Aligned_cols=567  Identities=22%  Similarity=0.281  Sum_probs=494.8

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGV  116 (1253)
Q Consensus        37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (1253)
                      +++++++.+++++ .+++++++.++..++....|++++.++|...............+. ....+++++++..++.++..
T Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   81 (574)
T PRK11160          4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYML-PAAGVRGAAIGRTAGRYGER   81 (574)
T ss_pred             hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHh-HHHHHHHHHHHHHHHHHHHH
Confidence            4567777777654 455677777777777777888999999975311100000001111 12223344456677888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          117 AFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVW  196 (1253)
Q Consensus       117 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (1253)
                      ++..+.++++..++|.++|+|++++|+.+|++ .++|++++|+++|++.+++++.+.++.++..++.++++++++++++|
T Consensus        82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (574)
T PRK11160         82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR-YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL  160 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChHhhcc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998 59999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000851          197 QLTLLTLAVVPLIAVA-GGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS  275 (1253)
Q Consensus       197 ~l~l~~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~  275 (1253)
                      ++++++++.+|++.++ ..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+.
T Consensus       161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~  240 (574)
T PRK11160        161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ  240 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888876654 466778888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          276 GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFS-GFALGQAAPNLAAIAKGKAAAANIISIIK  354 (1253)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  354 (1253)
                      .+..+...++..++..+..++++++|+++ .+|.+++|.+++++.+.... ..++..+...+..++++.++++|+.++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~  319 (574)
T PRK11160        241 ANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE  319 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99988888888888888888889999998 48999999988876655433 45677777888999999999999999998


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcE
Q 000851          355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK  434 (1253)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~  434 (1253)
                      .+++.+++ ..  .......+.|+|+||+|+|++.++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+
T Consensus       320 ~~~~~~~~-~~--~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~  396 (574)
T PRK11160        320 QKPEVTFP-TT--STAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE  396 (574)
T ss_pred             CCCCCCCC-cc--cCCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            77653211 11  1112234679999999999764445999999999999999999999999999999999999999999


Q ss_pred             EEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCC
Q 000851          435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ  514 (1253)
Q Consensus       435 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~  514 (1253)
                      |++||+|+++++.+++|++|+||+|||++|++||+|||++++|+.+++++.++++.+++++|+++ |+||||.+||+|.+
T Consensus       397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~  475 (574)
T PRK11160        397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ  475 (574)
T ss_pred             EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEee
Q 000851          515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG  594 (1253)
Q Consensus       515 LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g  594 (1253)
                      ||||||||++||||++++|+|||||||||+||+++|+.+++.|.++.+++|+|+||||+++++.||+|++|++|++++.|
T Consensus       476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g  555 (574)
T PRK11160        476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG  555 (574)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             CcchhhhcCchHHHHHH
Q 000851          595 THVDLISKGGEYAALVN  611 (1253)
Q Consensus       595 ~~~~l~~~~~~y~~~~~  611 (1253)
                      +|+||++++|.|+++|+
T Consensus       556 ~~~~l~~~~g~y~~l~~  572 (574)
T PRK11160        556 THQELLAQQGRYYQLKQ  572 (574)
T ss_pred             CHHHHHhcCcHHHHHHh
Confidence            99999999999999985

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=4.1e-86  Score=823.81  Aligned_cols=554  Identities=36%  Similarity=0.562  Sum_probs=495.2

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          679 EWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTAR  758 (1253)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  758 (1253)
                      .+ .+.++.++..+........+..+..+++... .    .......+...++++.++..++.++..++..+.+.+...+
T Consensus        13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   86 (567)
T COG1132          13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-A----DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD   86 (567)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 5666666666665555556666666666554 1    1122334455555666677778888888888888999999


Q ss_pred             HHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000851          759 VRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPL  838 (1253)
Q Consensus       759 lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl  838 (1253)
                      +|.++++++++.|++||+.  +++|++++|+++|++.++..+......+...++..++.+++++..+|.++++++...|+
T Consensus        87 lr~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~  164 (567)
T COG1132          87 LRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPL  164 (567)
T ss_pred             HHHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999985  67999999999999999999999866666678888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000851          839 LIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQL  918 (1253)
Q Consensus       839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  918 (1253)
                      +.+......+..++..+..++...+..+.+.|.++|+++||+|+.++...+++.+..+...+...+.....+...++...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (567)
T COG1132         165 LALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLL  244 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888888776688888888899999999999999999999999999999999999999999888888888888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcc
Q 000851          919 LSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKE  998 (1253)
Q Consensus       919 ~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~  998 (1253)
                      +..+..++.+++|..++..+.++.|.+..++.+......++..+......+..+..+.+|++++++.++........   
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---  321 (567)
T COG1132         245 LSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---  321 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999875543222111   


Q ss_pred             cccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH
Q 000851          999 VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 1078 (1253)
Q Consensus       999 ~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~ 1078 (1253)
                      .....+.|+|+||+|+|++  ++++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|++||+||++++.+
T Consensus       322 ~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~  399 (567)
T COG1132         322 LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD  399 (567)
T ss_pred             CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHH
Confidence            2234567999999999973  45799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1079 SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1079 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      +||++|++|||||+||++||+|||.+|+|+++|||+++|++.|+++|||+++|+||||.|||+|.+||||||||||||||
T Consensus       400 ~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa  479 (567)
T COG1132         400 SLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA  479 (567)
T ss_pred             HHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHH
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1238 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~ 1238 (1253)
                      ++++|+|||||||||+||++||+.|++++++..++||+|+||||++++++||+|+|||+|+|+|+|+|+||++ .+|.|+
T Consensus       480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~-~~g~y~  558 (567)
T COG1132         480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA-KGGLYA  558 (567)
T ss_pred             HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH-cCCHHH
Confidence            9999999999999999999999999999998888999999999999999999999999999999999999999 599999


Q ss_pred             HHHHHhhc
Q 000851         1239 QLIRLQQD 1246 (1253)
Q Consensus      1239 ~L~~~~~~ 1246 (1253)
                      +||+.|..
T Consensus       559 ~l~~~~~~  566 (567)
T COG1132         559 RLYQAQGG  566 (567)
T ss_pred             HHHHHhhc
Confidence            99998853

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=7e-86  Score=838.80  Aligned_cols=563  Identities=25%  Similarity=0.308  Sum_probs=500.4

Q ss_pred             HHHHHHHh-hchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000851           36 SFLSLFAA-ADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        36 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      .+++++++ ++++++ .++..++++++..++....|++++.++|.+.... +    ...+...++.++++.++..++.++
T Consensus       122 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~  195 (686)
T TIGR03797       122 GLRDLLRFALRGARR-DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-D----RSLLVQIALALLAAAVGAAAFQLA  195 (686)
T ss_pred             cHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666665 444433 3455566666677777777888999999875321 1    122333333444455556778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      +.++..+.+.++..++|.++|+|++++|+.||++ .++|++++|++ |++.+++.+...+...+.+....++.+++++++
T Consensus       196 ~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (686)
T TIGR03797       196 QSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ-YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYY  273 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999998 59999999997 899999999988888888888888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      +|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+++.|+.+.++|++..++..+...+
T Consensus       274 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  353 (686)
T TIGR03797       274 SWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELS  353 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK  354 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  354 (1253)
                      ..........+..++..+..++++|+|++++.+|.+|+|.++++..+......|+.++...+..++++..+.+|+.++++
T Consensus       354 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~  433 (686)
T TIGR03797       354 AQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILE  433 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            98888888888888888888899999999999999999999998888888888999999999999999999999999998


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcE
Q 000851          355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK  434 (1253)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~  434 (1253)
                      .+++.+ .  . ........+.|+|+||+|+|++.++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+
T Consensus       434 ~~~e~~-~--~-~~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~  509 (686)
T TIGR03797       434 ALPEVD-E--A-KTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS  509 (686)
T ss_pred             CCcccc-c--C-cCCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            765432 1  1 11122345689999999999754456999999999999999999999999999999999999999999


Q ss_pred             EEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCC
Q 000851          435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ  514 (1253)
Q Consensus       435 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~  514 (1253)
                      |++||+|+++++.+++|++||||+|||++|++||+|||.+|+| +++++++++|+.++++++++++|+||||.+||+|.+
T Consensus       510 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~  588 (686)
T TIGR03797       510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT  588 (686)
T ss_pred             EEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence            9999999999999999999999999999999999999999998 899999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEee
Q 000851          515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG  594 (1253)
Q Consensus       515 LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g  594 (1253)
                      |||||||||+||||++++|+|||||||||+||+++|+.+.+.|+++  ++|+|+||||+++++.||+|+||++|+|++.|
T Consensus       589 LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G  666 (686)
T TIGR03797       589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG  666 (686)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence            9999999999999999999999999999999999999999999887  68999999999999999999999999999999


Q ss_pred             CcchhhhcCchHHHHHHhh
Q 000851          595 THVDLISKGGEYAALVNLQ  613 (1253)
Q Consensus       595 ~~~~l~~~~~~y~~~~~~~  613 (1253)
                      +|+||++++|.|++++..|
T Consensus       667 ~~~~Ll~~~~~y~~l~~~q  685 (686)
T TIGR03797       667 TYDELMAREGLFAQLARRQ  685 (686)
T ss_pred             CHHHHHhCCcHHHHHHHhc
Confidence            9999999999999998754

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.2e-85  Score=824.44  Aligned_cols=568  Identities=21%  Similarity=0.295  Sum_probs=484.2

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          669 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFY  748 (1253)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  748 (1253)
                      +.+++++.+++++.+++++++.++..+.....++.+..+++....+..+ . .....+..+++++.++..++.+++.++.
T Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (588)
T PRK11174         10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-R-EALLPPFILLILLFVLRALLAWLRERVG   87 (588)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446666777888888888888888877777788888877765421111 1 1122334445555666777888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000851          749 TLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL  828 (1253)
Q Consensus       749 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  828 (1253)
                      ...+.++..++|.++|++++++|.+||+  ++++|++++|+++|++.+++.+...+..++.+++.+++++++++.++|++
T Consensus        88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  165 (588)
T PRK11174         88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA  165 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997  47899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000851          829 AAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHI  908 (1253)
Q Consensus       829 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~  908 (1253)
                      ++++++++|++++......+..++..++.++...+..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+.
T Consensus       166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  245 (588)
T PRK11174        166 GLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRM  245 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888777777777777888888899999999999999999999999999999999999999888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          909 SGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDI---------MKSFMVLIITALAVAETLALAPDIVKGSQALGPV  979 (1253)
Q Consensus       909 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i  979 (1253)
                      ......+..++..+..++..++++..+ .|.+++|.+         +.++.+......++..+...+..+..+..+.+|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri  324 (588)
T PRK11174        246 AFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL  324 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776666666666555555555554443 377777754         1111233345567888888889999999999999


Q ss_pred             HHHhcccccCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 000851          980 FGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus       980 ~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~ 1059 (1253)
                      .++++.+++.++... ...+.+..+.|+|+||+|.|++  ++++|+|+||+|+|||++||||+||||||||+++|+|+| 
T Consensus       325 ~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-  400 (588)
T PRK11174        325 VTFLETPLAHPQQGE-KELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-  400 (588)
T ss_pred             HHHHcCCCcccCCCc-cccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence            999876543221111 0011112357999999998863  457999999999999999999999999999999999999 


Q ss_pred             CCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc
Q 000851         1060 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVG 1139 (1253)
Q Consensus      1060 p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vg 1139 (1253)
                      |++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+|+|+++|+|+++|++.|++++||+++|+||||.+|
T Consensus       401 p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg  480 (588)
T PRK11174        401 PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG  480 (588)
T ss_pred             CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCE
Q 000851         1140 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGK 1219 (1253)
Q Consensus      1140 e~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ 1219 (1253)
                      |+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++++||+|+||++|+
T Consensus       481 e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~  560 (588)
T PRK11174        481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ  560 (588)
T ss_pred             cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEEecChhHHhhcccchHHHHHHHhhc
Q 000851         1220 VAEIGSHEQLLRKENGIYKQLIRLQQD 1246 (1253)
Q Consensus      1220 ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1246 (1253)
                      ++|.|+|+||++ ++|.|+++++.|.+
T Consensus       561 i~e~G~~~eL~~-~~~~y~~l~~~q~~  586 (588)
T PRK11174        561 IVQQGDYAELSQ-AGGLFATLLAHRQE  586 (588)
T ss_pred             EeecCCHHHHHh-cchHHHHHHHHhhc
Confidence            999999999998 58999999988754

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=1.9e-85  Score=837.78  Aligned_cols=565  Identities=25%  Similarity=0.369  Sum_probs=501.5

Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000851           35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      ..+++++++.+++++. ++..++++++..++....|++++.++|.+....     ....+...+..++++.++..++.++
T Consensus       142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~  215 (708)
T TIGR01193       142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-----MMGTLGIISIGLIIAYIIQQILSYI  215 (708)
T ss_pred             chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888776544 445566666666777777888999999865321     1122222333344444556678888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      +.++..+.+.++..++|.++|+|++++|+.||++ .++|++++|++ |++.+++++...+..++.++..+++.+++++++
T Consensus       216 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  293 (708)
T TIGR01193       216 QIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQ  293 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999998 59999999998 999999999888888888888888888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      +|++++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++...+..+...+
T Consensus       294 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  373 (708)
T TIGR01193       294 NMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK  373 (708)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK  354 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  354 (1253)
                      .....+....+..++..+..++++|+|++++.+|.+|+|.++++..+......|+.++...+..++++..+.+|+.++++
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~  453 (708)
T TIGR01193       374 YQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYL  453 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88888777777777777888889999999999999999999999888888888999999999999999999999999998


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcE
Q 000851          355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK  434 (1253)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~  434 (1253)
                      .+++.+ . .......+...+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus       454 ~~~e~~-~-~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~  530 (708)
T TIGR01193       454 VDSEFI-N-KKKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE  530 (708)
T ss_pred             CCCccc-c-cccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence            765533 1 11101122345789999999999743 35999999999999999999999999999999999999999999


Q ss_pred             EEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCC
Q 000851          435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT  513 (1253)
Q Consensus       435 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~  513 (1253)
                      |++||+|+++++.+++|++||||+|||+||++||+|||.+| .|++++++++++|+.++++++++++|+||||.+||+|.
T Consensus       531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~  610 (708)
T TIGR01193       531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS  610 (708)
T ss_pred             EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence            99999999999999999999999999999999999999999 57889999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000851          514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES  593 (1253)
Q Consensus       514 ~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~  593 (1253)
                      +|||||||||+||||++++|+|||||||||+||+++|+.+.+.|+++ +++|+|+||||+++++.||+|++|++|++++.
T Consensus       611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~  689 (708)
T TIGR01193       611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ  689 (708)
T ss_pred             CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence            99999999999999999999999999999999999999999999985 68999999999999999999999999999999


Q ss_pred             eCcchhhhcCchHHHHHH
Q 000851          594 GTHVDLISKGGEYAALVN  611 (1253)
Q Consensus       594 g~~~~l~~~~~~y~~~~~  611 (1253)
                      |+|+||++++|.|+++++
T Consensus       690 G~~~~L~~~~~~y~~l~~  707 (708)
T TIGR01193       690 GSHDELLDRNGFYASLIH  707 (708)
T ss_pred             CCHHHHHhcCCcHHHHhh
Confidence            999999999999999874

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=3.6e-85  Score=836.19  Aligned_cols=566  Identities=25%  Similarity=0.330  Sum_probs=500.3

Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000851           35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      ..++.++++++++++. +...++++++..+.....|++++.++|.+.... +    ...+......++++.++..++.++
T Consensus       140 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~  213 (710)
T TIGR03796       140 SLLRALWRRLRGSRGA-LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG-R----QDWLRPLLLGMGLTALLQGVLTWL  213 (710)
T ss_pred             ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466677777766443 344455555556666667778999999865321 1    111222333344445556778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      +.++..+.+.++..++|.++|+|++++|+++|++ .++|++++|+++| +.+++++...+..++.++..+++.+++++++
T Consensus       214 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  291 (710)
T TIGR03796       214 QLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ-RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLY  291 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999998 5999999999988 7899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      +|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+++.|+.+.++|.+...+..+...+
T Consensus       292 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  371 (710)
T TIGR03796       292 DPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQE  371 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK  354 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  354 (1253)
                      .....+....+..++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+++|+.++++
T Consensus       372 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~  451 (710)
T TIGR03796       372 LGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLR  451 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88888888888888888888899999999999999999999998888888888999999999999999999999999998


Q ss_pred             ccCCCCCCCCC--C-CCCC-CCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC
Q 000851          355 ENSHSSERPGD--D-GITL-PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP  430 (1253)
Q Consensus       355 ~~~~~~~~~~~--~-~~~~-~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~  430 (1253)
                      .+++.+.....  . .... +...+.|+++||+|+|++.++++|+|+||+|+|||++|||||||||||||+++|+|+|+|
T Consensus       452 ~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p  531 (710)
T TIGR03796       452 NPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP  531 (710)
T ss_pred             CCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            76553311000  0 0111 234578999999999986545699999999999999999999999999999999999999


Q ss_pred             CCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccC
Q 000851          431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE  510 (1253)
Q Consensus       431 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~  510 (1253)
                      ++|+|++||+|+++++.+++|++||||+|||++|++||+|||.++.|++++++++++|+.+++++++.++|+||||.+||
T Consensus       532 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e  611 (710)
T TIGR03796       532 WSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE  611 (710)
T ss_pred             CCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceecc
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000851          511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV  590 (1253)
Q Consensus       511 ~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i  590 (1253)
                      +|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++  .++|+|+||||+++++.||+|++|++|+|
T Consensus       612 ~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i  689 (710)
T TIGR03796       612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKV  689 (710)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEE
Confidence            9999999999999999999999999999999999999999999999987  58999999999999999999999999999


Q ss_pred             EEeeCcchhhhcCchHHHHH
Q 000851          591 VESGTHVDLISKGGEYAALV  610 (1253)
Q Consensus       591 ~~~g~~~~l~~~~~~y~~~~  610 (1253)
                      ++.|+|+||++++|.|++++
T Consensus       690 ~~~G~~~~Ll~~~~~y~~l~  709 (710)
T TIGR03796       690 VQRGTHEELWAVGGAYARLI  709 (710)
T ss_pred             EEecCHHHHHHcCCcHHHHh
Confidence            99999999999999999886

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=1e-84  Score=826.64  Aligned_cols=564  Identities=32%  Similarity=0.508  Sum_probs=502.1

Q ss_pred             hHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          668 SIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF  747 (1253)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  747 (1253)
                      .+++++++.++.++++...+++.++..+.....++.+.++++........   ........+++++.++..++.+++.++
T Consensus       148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~  224 (711)
T TIGR00958       148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLRGGS  224 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777788888888887777777777777777777777766532211   112223344445556667778888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000851          748 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWR  827 (1253)
Q Consensus       748 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  827 (1253)
                      +...+.++..++|.++|++++++|++||+.  +++|++++|+++|++.+++.+...+..++.+++.+++++++++.++|.
T Consensus       225 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~  302 (711)
T TIGR00958       225 FNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR  302 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            999999999999999999999999999974  789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHH
Q 000851          828 LAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGH  907 (1253)
Q Consensus       828 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~  907 (1253)
                      +++++++..|+.++......+..++..++.++...+..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+...
T Consensus       303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  382 (711)
T TIGR00958       303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL  382 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888888888888889999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000851          908 ISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKT  987 (1253)
Q Consensus       908 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~  987 (1253)
                      .......+...+..+..++.+++|++++..|.++.|+++++..+......++..+...+.++.++..+.+|+.++++.++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  462 (711)
T TIGR00958       383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP  462 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            77777777777777888888999999999999999999999999999999999999999999999999999999997765


Q ss_pred             cCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEE
Q 000851          988 AIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067 (1253)
Q Consensus       988 ~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~i 1067 (1253)
                      +.+....  ..+.+..+.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus       463 ~~~~~~~--~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i  540 (711)
T TIGR00958       463 NIPLTGT--LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL  540 (711)
T ss_pred             CCCCCCC--CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence            4322111  11223457899999999999766678999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000851         1068 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147 (1253)
Q Consensus      1068 dG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSg 1147 (1253)
                      ||+|+++++.+++|++|+||||||++|+|||||||.++.++.+|+++++|++.++++++++++|+||||.+||+|.+|||
T Consensus       541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG  620 (711)
T TIGR00958       541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG  620 (711)
T ss_pred             CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChh
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      |||||||||||++++|+|||||||||+||+++|+.|++  ....+++|+|+||||++++..||+|+||++|+|+|+|+|+
T Consensus       621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~  698 (711)
T TIGR00958       621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK  698 (711)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHH
Confidence            99999999999999999999999999999999999999  3345789999999999999999999999999999999999


Q ss_pred             HHhhcccchHHHHH
Q 000851         1228 QLLRKENGIYKQLI 1241 (1253)
Q Consensus      1228 eLl~~~~g~y~~L~ 1241 (1253)
                      ||++ ++|.|++|+
T Consensus       699 eL~~-~~~~y~~lv  711 (711)
T TIGR00958       699 QLME-DQGCYKHLV  711 (711)
T ss_pred             HHHh-CCCchHhcC
Confidence            9998 578999874

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=2.1e-84  Score=826.35  Aligned_cols=557  Identities=25%  Similarity=0.345  Sum_probs=495.2

Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000851           35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      ..+++++++.+++++ .+...++++++..++....|++++.++|.+.... +    ...+......++++.++..++.++
T Consensus       133 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~  206 (694)
T TIGR03375       133 RPKHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-A----FETLWVLAIGVALAIVFDFVLKTL  206 (694)
T ss_pred             ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-c----HhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777776644 3445566666666777777888999999865321 1    122222333333444556678888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      +.++..+.+.++..++|.++|+|++++|+.| ++ .++|++++|+ +|++.+++++...+...+.++..+++.+++++++
T Consensus       207 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  283 (694)
T TIGR03375       207 RSYFLDVAGKKADLILSAKLFERVLGLRMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAII  283 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998 55 5899999999 7999999999988888888888888888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      +|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus       284 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  363 (694)
T TIGR03375       284 GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK  363 (694)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK  354 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  354 (1253)
                      ..+..+....+..++..++.++++|+|++++.+|.+|+|++++++.+......|+..+...+..++.+..+.+|+.++++
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~  443 (694)
T TIGR03375       364 SRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQ  443 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99998888888888888888889999999999999999999999888888888999999999999999999999999998


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcE
Q 000851          355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK  434 (1253)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~  434 (1253)
                      .+++.+ . .......+...+.|+|+||+|+|++..+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus       444 ~~~e~~-~-~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~  521 (694)
T TIGR03375       444 LPVERP-E-GTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS  521 (694)
T ss_pred             CCCCCC-C-CCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            766532 1 11111122345689999999999854456999999999999999999999999999999999999999999


Q ss_pred             EEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCC
Q 000851          435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ  514 (1253)
Q Consensus       435 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~  514 (1253)
                      |.+||+|+++++.+++|++|+||+|+|++|++||+|||.+++|++++++++++++.++++++++++|+||||.+||+|.+
T Consensus       522 I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~  601 (694)
T TIGR03375       522 VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRS  601 (694)
T ss_pred             EEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEee
Q 000851          515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG  594 (1253)
Q Consensus       515 LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g  594 (1253)
                      |||||||||+||||++++|+|||||||||+||+++|+.+++.|.++.+++|+|+||||+++++.||+|++|++|+++|+|
T Consensus       602 LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G  681 (694)
T TIGR03375       602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG  681 (694)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             Ccchhhhc
Q 000851          595 THVDLISK  602 (1253)
Q Consensus       595 ~~~~l~~~  602 (1253)
                      +|+||+++
T Consensus       682 ~~~eLl~~  689 (694)
T TIGR03375       682 PKDQVLEA  689 (694)
T ss_pred             CHHHHHHH
Confidence            99999865

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=6.3e-84  Score=808.58  Aligned_cols=569  Identities=30%  Similarity=0.455  Sum_probs=502.2

Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000851           35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      +.+++++++.+++++. +++.+++.++..+.....|++++.++|.+....  .   ...+....+.+++++++..++.++
T Consensus        11 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~   84 (582)
T PRK11176         11 QTFRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKA--D---RSVLKWMPLVVIGLMILRGITSFI   84 (582)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--c---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3356677777766544 345556666666666777788898998764321  1   111222222233345556677788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      ..++..+.+.++..++|.++|+++.+.|..+|++ .++|++++|+++|++.+++.+...+..++..++.+++.+++++++
T Consensus        85 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (582)
T PRK11176         85 SSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY  163 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999987 599999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      +|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus       164 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~  243 (582)
T PRK11176        164 SWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMK  243 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK  354 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  354 (1253)
                      ..+.......+..++..+..++++++|++.+.+|.+|+|++++++.++.....|+..+...+..++++..+.+|+.++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~  323 (582)
T PRK11176        244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD  323 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888888888888888888888999999999999999999888777777788999999999999999999999999997


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcE
Q 000851          355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK  434 (1253)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~  434 (1253)
                      .+++.+ .   .....++..+.|+++||+|+|++...++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus       324 ~~~~~~-~---~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~  399 (582)
T PRK11176        324 LEQEKD-E---GKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE  399 (582)
T ss_pred             CCCcCC-C---CCcCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence            654422 1   111122334579999999999865456999999999999999999999999999999999999999999


Q ss_pred             EEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCC
Q 000851          435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT  513 (1253)
Q Consensus       435 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~  513 (1253)
                      |++||+|+++++.+++|++|+||||||++|++||+|||.+|+++ .++++++++++.++++++++++|+|+||.+||+|.
T Consensus       400 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~  479 (582)
T PRK11176        400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV  479 (582)
T ss_pred             EEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC
Confidence            99999999999999999999999999999999999999999765 68999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000851          514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES  593 (1253)
Q Consensus       514 ~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~  593 (1253)
                      +|||||||||+||||++++|+|||||||||+||+++|+.+.+.|.++.+++|+|+||||++.++.||+|++|++|+|+|.
T Consensus       480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~  559 (582)
T PRK11176        480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVER  559 (582)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             eCcchhhhcCchHHHHHHhhh
Q 000851          594 GTHVDLISKGGEYAALVNLQS  614 (1253)
Q Consensus       594 g~~~~l~~~~~~y~~~~~~~~  614 (1253)
                      |+|++|+++++.|++++..|.
T Consensus       560 g~~~~l~~~~~~y~~l~~~~~  580 (582)
T PRK11176        560 GTHAELLAQNGVYAQLHKMQF  580 (582)
T ss_pred             CCHHHHHhCCChHHHHHHHHh
Confidence            999999999999999997653

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-87  Score=738.18  Aligned_cols=550  Identities=28%  Similarity=0.375  Sum_probs=468.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 000851           56 SLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGL------VALVSAWIGVAFWMQTGERQTAR  129 (1253)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  129 (1253)
                      .++..+.-+.....|.+.++++|.+..+.    .+...   .....+++.+      +..+++-++.++|..+.+-..++
T Consensus       221 l~ll~i~rli~~~~pi~~k~iv~~ltap~----~~~~~---~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~  293 (790)
T KOG0056|consen  221 LFLLIIGRLINVSLPILSKWIVDELTAPD----TFQYS---LVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTRE  293 (790)
T ss_pred             HHHHHHHHHHhhhhHHhHHHHHHhhcCcc----hhhHH---HHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHH
Confidence            33344444555666778899999876321    11111   1111222211      23456667788888888889999


Q ss_pred             HHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000851          130 LRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVG-FTSVWQLTLLTLAVVPL  208 (1253)
Q Consensus       130 lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl  208 (1253)
                      +-..+|+|++.++++|+-+ .++|+++..++..++.+. ++...+.++...+.-+.++++.. ..++|+.++++++++.+
T Consensus       294 ie~~lfrHlh~LSlrwHL~-rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~l  371 (790)
T KOG0056|consen  294 IETELFRHLHNLSLRWHLN-RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLL  371 (790)
T ss_pred             HHHHHHHHHHhhceeeeec-ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence            9999999999999999987 599999998888777776 65666666666666555555543 45799999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          209 IAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYG  288 (1253)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1253)
                      .+.+...+.....+..++...++.+..+...+++-|.++||-|++|+++.++|.+...++.+...|......+.+.....
T Consensus       372 Y~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~  451 (790)
T KOG0056|consen  372 YCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNG  451 (790)
T ss_pred             HhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            88777777777777788888888888899999999999999999999999999999999988888776655555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 000851          289 LLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGI  368 (1253)
Q Consensus       289 ~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~  368 (1253)
                      +..++.+..-.+.+|+|..+.+|+|+++.+..|++...+|+..+...+..+|+...-+++++++++++++..+.  +...
T Consensus       452 Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~--P~a~  529 (790)
T KOG0056|consen  452 IIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL--PGAP  529 (790)
T ss_pred             hhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC--CCCC
Confidence            55555555555667888899999999999989999999999999999999999999999999999998886522  2222


Q ss_pred             CCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH
Q 000851          369 TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK  448 (1253)
Q Consensus       369 ~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~  448 (1253)
                      +....+|.|+|+||+|+|+.+ +++|+||||+++||+++|+|||||+||||++++|.||||.++|.|++||+||+.+...
T Consensus       530 pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~  608 (790)
T KOG0056|consen  530 PLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQS  608 (790)
T ss_pred             CccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHH
Confidence            333456899999999999753 4699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      ++|++||+||||..|||+||..||.||+|.+++||+.+|++.|++||-|..+|+||+|.|||+|-.||||||||+||||+
T Consensus       609 SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARt  688 (790)
T KOG0056|consen  609 SLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIART  688 (790)
T ss_pred             HHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc-CchHH
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYA  607 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~y~  607 (1253)
                      ++++|.|++|||+|||||..||+.||.+|.++..+||.|+|+||+||+-+||.|+|+++|+|+|.|+|+||+++ +|.|+
T Consensus       689 iLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya  768 (790)
T KOG0056|consen  689 ILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYA  768 (790)
T ss_pred             HhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998 89999


Q ss_pred             HHHHhhhccc
Q 000851          608 ALVNLQSSEH  617 (1253)
Q Consensus       608 ~~~~~~~~~~  617 (1253)
                      +||+.|....
T Consensus       769 ~MWq~qqa~g  778 (790)
T KOG0056|consen  769 DMWQAQQAMG  778 (790)
T ss_pred             HHHHHHHhcC
Confidence            9998776543

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-83  Score=740.57  Aligned_cols=552  Identities=27%  Similarity=0.355  Sum_probs=491.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           55 GSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKY  134 (1253)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l  134 (1253)
                      ..++..+.+++.....+++..+++.+....     ....+..+...++++.++..++.+.+.....+.+.++..++|..+
T Consensus         5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~-----~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~   79 (559)
T COG4988           5 SALLAVLSGIAIIAQAALLADILTKLIEGQ-----LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLV   79 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555666777777654321     122333344455555666778888888888899999999999999


Q ss_pred             HHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          135 LQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGG  214 (1253)
Q Consensus       135 ~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~  214 (1253)
                      ++|+.+++..+-.+ .++|+.++.+++.++.++.+++..++++....+..+..++.+|+++|.-++++++++|++.+++.
T Consensus        80 l~~l~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi  158 (559)
T COG4988          80 LDKLAKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI  158 (559)
T ss_pred             HHHHHhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987 59999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          215 AYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAW  294 (1253)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1253)
                      +++++.++..+++...+.++++..-|.++|+.|+|.|+..+...+++.+..++.++.+++.-+..-....+..++.+++.
T Consensus       159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi  238 (559)
T COG4988         159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI  238 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             HHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 000851          295 ALLLWYAGILVRH-GDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKL  373 (1253)
Q Consensus       295 ~~~~~~g~~~v~~-g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~  373 (1253)
                      +++..+-+..... |.+|....+.+++..--.+.|+..+...++.-+.+.++.++++.+++.+++.. +...........
T Consensus       239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~-~~~~~~~~~~~~  317 (559)
T COG4988         239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATP-GSGEKAEVANEP  317 (559)
T ss_pred             HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCC-CCccccccccCC
Confidence            9888887777777 89998776666555555678999999999999999999999999998776533 111100111112


Q ss_pred             CCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000851          374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ  453 (1253)
Q Consensus       374 ~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~  453 (1253)
                      ..+++++|++|.|++++ ++++|+||++++|+.+||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||++
T Consensus       318 ~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~  396 (559)
T COG4988         318 PIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ  396 (559)
T ss_pred             CceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence            23566669999999764 69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          454 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       454 i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      ++||+|+|++|++||||||++++|+++++++.++++.+++.+|+.. |+|+||.+||+|.+|||||+||+++|||+++++
T Consensus       397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~  475 (559)
T COG4988         397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA  475 (559)
T ss_pred             eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCchHHHHHHhh
Q 000851          534 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ  613 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~~~~  613 (1253)
                      +++|||||||+||.+||+.|.+.|.++.+++|+|+||||++.+++||+|+|||+|+++|+|+|++|.+++|.|++|+..|
T Consensus       476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q  555 (559)
T COG4988         476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQ  555 (559)
T ss_pred             CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hc
Q 000851          614 SS  615 (1253)
Q Consensus       614 ~~  615 (1253)
                      ..
T Consensus       556 ~~  557 (559)
T COG4988         556 EG  557 (559)
T ss_pred             hc
Confidence            53

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.2e-83  Score=815.94  Aligned_cols=554  Identities=27%  Similarity=0.372  Sum_probs=489.0

Q ss_pred             hchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          677 AAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLT  756 (1253)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  756 (1253)
                      ++.++.+...++++++..+.....++.+..+++.......   ......+.+.++++.++..++.+++.++...++.++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (686)
T TIGR03797       132 RGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMD  208 (686)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555444444455555556554432211   1122334455556666677888899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000851          757 ARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASL  836 (1253)
Q Consensus       757 ~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~  836 (1253)
                      .++|..+|+++++.|++||+.  +++|++++|++ |++.+++.+...+...+.+++..++++++++.++|++++++++++
T Consensus       209 ~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~  285 (686)
T TIGR03797       209 ASLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALA  285 (686)
T ss_pred             HHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999974  78999999997 799999999998888888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000851          837 PLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVS  916 (1253)
Q Consensus       837 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  916 (1253)
                      |+.+++.++..+..++..++..+...+..+.+.|+++|+++||+++.|+++.++|.+..++..+...+......+...+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (686)
T TIGR03797       286 LVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFN  365 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888888888888888888888999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 000851          917 QLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPAS  996 (1253)
Q Consensus       917 ~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~  996 (1253)
                      .++..+..++.+|+|++++..|.++.|.++++.++......++..+...+..+..+..+.+|+.++++.+++.+...   
T Consensus       366 ~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---  442 (686)
T TIGR03797       366 AVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK---  442 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---
Confidence            88888999999999999999999999999999999889999999999999999999999999999987654322111   


Q ss_pred             cccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC
Q 000851          997 KEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 1076 (1253)
Q Consensus       997 ~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~ 1076 (1253)
                      ..+.+..+.|+|+||+|+|+.. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++
T Consensus       443 ~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~  521 (686)
T TIGR03797       443 TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD  521 (686)
T ss_pred             CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence            1112345689999999999743 457999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1077 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      ++++|++|+||||||++|+|||||||.+++| .+++++++|++.++++++|+++|+||||++||+|.+|||||||||+||
T Consensus       522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA  600 (686)
T TIGR03797       522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA  600 (686)
T ss_pred             HHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999988 899999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccch
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGI 1236 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~ 1236 (1253)
                      |||+++|+|||||||||+||++||+.|++.|++.  ++|+|+||||+++++.||+|+||++|+|+|.|+|+||++ ++|.
T Consensus       601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~-~~~~  677 (686)
T TIGR03797       601 RALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGL  677 (686)
T ss_pred             HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh-CCcH
Confidence            9999999999999999999999999999999986  689999999999999999999999999999999999998 6899


Q ss_pred             HHHHHHHh
Q 000851         1237 YKQLIRLQ 1244 (1253)
Q Consensus      1237 y~~L~~~~ 1244 (1253)
                      |++|++.|
T Consensus       678 y~~l~~~q  685 (686)
T TIGR03797       678 FAQLARRQ  685 (686)
T ss_pred             HHHHHHhc
Confidence            99999865

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=3.5e-83  Score=814.29  Aligned_cols=568  Identities=30%  Similarity=0.390  Sum_probs=505.0

Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000851           35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      ..+++++++.+++++ .+...++++++..++....|++++.++|.+.... +    ...+...++.++++.++..++.++
T Consensus       125 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~----~~~l~~l~~~~~~~~~~~~~~~~l  198 (694)
T TIGR01846       125 FGFSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-G----LSTLSVLALAMLAVAIFEPALGGL  198 (694)
T ss_pred             CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677777766543 3445556666666666777888999999865321 1    122333333444455556778889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      +.++..+.+.++..++|.++|+|++++|+.||++ .++|++++|+ +|++.+++++...+..++.++...++.+++++++
T Consensus       199 ~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  276 (694)
T TIGR01846       199 RTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES-RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFY  276 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998 5999999999 6999999999888888887777777778899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      +|.+++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+
T Consensus       277 ~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  356 (694)
T TIGR01846       277 SPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFR  356 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK  354 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  354 (1253)
                      ..+..+....+..++..+..++++|+|++++.+|.+|+|.++++..+......|+..+...+..++++..+++|+.++++
T Consensus       357 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~  436 (694)
T TIGR01846       357 VTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILN  436 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            98888888888888888888899999999999999999999998888888888999999999999999999999999998


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcE
Q 000851          355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK  434 (1253)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~  434 (1253)
                      .+++.+ .  ......+...+.|+++||+|+|++..+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+
T Consensus       437 ~~~e~~-~--~~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~  513 (694)
T TIGR01846       437 SPTEPR-S--AGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ  513 (694)
T ss_pred             CCCCcc-C--CCCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            765432 1  1111123345789999999999754445999999999999999999999999999999999999999999


Q ss_pred             EEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCC
Q 000851          435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ  514 (1253)
Q Consensus       435 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~  514 (1253)
                      |++||+|+++++.+++|++|+||+|+|++|++||+|||.++.|+.+++++.++|+.++++++++++|+|+||.+|++|.+
T Consensus       514 I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~  593 (694)
T TIGR01846       514 VLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN  593 (694)
T ss_pred             EEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEee
Q 000851          515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG  594 (1253)
Q Consensus       515 LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g  594 (1253)
                      ||||||||++||||++++|+|||||||||+||+++|+.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++.|
T Consensus       594 LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g  673 (694)
T TIGR01846       594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESG  673 (694)
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeC
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             CcchhhhcCchHHHHHHhh
Q 000851          595 THVDLISKGGEYAALVNLQ  613 (1253)
Q Consensus       595 ~~~~l~~~~~~y~~~~~~~  613 (1253)
                      +|+||++++|.|++++..|
T Consensus       674 ~~~~l~~~~~~y~~l~~~~  692 (694)
T TIGR01846       674 RHEELLALQGLYARLWQQQ  692 (694)
T ss_pred             CHHHHHHcCChHHHHHHhh
Confidence            9999999999999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-83  Score=739.33  Aligned_cols=552  Identities=25%  Similarity=0.366  Sum_probs=493.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          686 GSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFS  765 (1253)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~  765 (1253)
                      ..+++.+.++....+++.++..+..++....   ......+...++++.++..++.+.+......++.++...+|.++++
T Consensus         5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~   81 (559)
T COG4988           5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLD   81 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666667777777777665432   2233455666677777888889999999999999999999999999


Q ss_pred             HHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000851          766 AILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVA  845 (1253)
Q Consensus       766 ~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~  845 (1253)
                      ++.+.+..|-.  ..++|+..+..+..++.++.+++..+++++...+.++..++.+++++|.-+++++++.|++.+++++
T Consensus        82 ~l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil  159 (559)
T COG4988          82 KLAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL  159 (559)
T ss_pred             HHHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            99999998876  4789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          846 EQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYA  925 (1253)
Q Consensus       846 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  925 (1253)
                      .....+...+++...+.+.++++.+.++|+.|+|+||..++..++..+...+.++..++..++.-....+.+++.++..+
T Consensus       160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA  239 (559)
T COG4988         160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA  239 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988888999999998888


Q ss_pred             HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccC
Q 000851          926 LGLWYASVLIKQ-KGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKG 1004 (1253)
Q Consensus       926 ~~~~~g~~lv~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 1004 (1253)
                      ++..+.+..... |++++...+.++...--+..|+..+...+..-..+..+.+.++.+++.+.+..+........+....
T Consensus       240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~  319 (559)
T COG4988         240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI  319 (559)
T ss_pred             HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence            876665555555 7899888887777777888999999999999999988889999888776554332221111122233


Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++|++|+||+.  +++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.||+++
T Consensus       320 ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i  397 (559)
T COG4988         320 EISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI  397 (559)
T ss_pred             eeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence            46666999999853  3799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000851         1085 GLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 1164 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ 1164 (1253)
                      ++|||+|+||+|||||||.+++++.+|+++++|++.+++.+|+.. |+|+||.+||+|.+|||||+||+++||||+++++
T Consensus       398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~  476 (559)
T COG4988         398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS  476 (559)
T ss_pred             eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             EEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHHHHh
Q 000851         1165 ILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244 (1253)
Q Consensus      1165 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~~~ 1244 (1253)
                      ++|||||||+||.+||+.|++.|.++.+++|||+||||++.+++||+|+|||+||++|+|+|++|.+ ++|.|++|++.|
T Consensus       477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~-~~~~y~~l~~~q  555 (559)
T COG4988         477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE-KQGLYANLLKQQ  555 (559)
T ss_pred             EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-cCcHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 689999999887


Q ss_pred             hc
Q 000851         1245 QD 1246 (1253)
Q Consensus      1245 ~~ 1246 (1253)
                      ..
T Consensus       556 ~~  557 (559)
T COG4988         556 EG  557 (559)
T ss_pred             hc
Confidence            64

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=8e-83  Score=813.57  Aligned_cols=563  Identities=25%  Similarity=0.390  Sum_probs=493.9

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          669 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFY  748 (1253)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  748 (1253)
                      +.+++.+.++.++.+...++++++..+.....++.+..+++.......   ......+...++++.++..++.+++.++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  220 (708)
T TIGR01193       144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFLL  220 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555566666555555555555555556666666665543221   11222334444455566677888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000851          749 TLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL  828 (1253)
Q Consensus       749 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  828 (1253)
                      ...+.++..++|.++|+++++.|++||+.  +++|++++|++ |.+.+++.+...+...+.+++..+++++++++++|++
T Consensus       221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  297 (708)
T TIGR01193       221 NVLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLL  297 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999974  79999999998 9999999999888888888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000851          829 AAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHI  908 (1253)
Q Consensus       829 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~  908 (1253)
                      ++++++++|+++++.+...+..++..++..+...+..+.+.|+++|+++||++|.|+.+.++|.+..++..+...+....
T Consensus       298 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  377 (708)
T TIGR01193       298 FLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKA  377 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888888888889999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000851          909 SGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTA  988 (1253)
Q Consensus       909 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~  988 (1253)
                      ......+..++..+..++++|+|++++..|.+|.|+++++..+......++..+...+..+..+..+.+|+.++++.+++
T Consensus       378 ~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e  457 (708)
T TIGR01193       378 DQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE  457 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            88888888888888889999999999999999999999999998999999999999999999999999999999876544


Q ss_pred             CCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEEC
Q 000851          989 IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 1068 (1253)
Q Consensus       989 ~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~id 1068 (1253)
                      .+.... ....++..+.|+|+||+|+|+.  ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus       458 ~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~id  534 (708)
T TIGR01193       458 FINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN  534 (708)
T ss_pred             cccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEC
Confidence            322211 0112234578999999999973  3579999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCHHHHhcceEEEccCCCcccccHHHHhccC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000851         1069 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147 (1253)
Q Consensus      1069 G~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g-~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSg 1147 (1253)
                      |+|+++++++++|++|+||||||+||+|||||||.++ .++++++++++|++.++++++|.++|+||||.+||+|.+|||
T Consensus       535 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSg  614 (708)
T TIGR01193       535 GFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISG  614 (708)
T ss_pred             CEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCH
Confidence            9999999999999999999999999999999999998 578999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChh
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      ||||||+||||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||+++++.||+|+||++|+++|.|+|+
T Consensus       615 GQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~  693 (708)
T TIGR01193       615 GQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHD  693 (708)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999999999985 789999999999999999999999999999999999


Q ss_pred             HHhhcccchHHHHHH
Q 000851         1228 QLLRKENGIYKQLIR 1242 (1253)
Q Consensus      1228 eLl~~~~g~y~~L~~ 1242 (1253)
                      ||++ ++|.|++|++
T Consensus       694 ~L~~-~~~~y~~l~~  707 (708)
T TIGR01193       694 ELLD-RNGFYASLIH  707 (708)
T ss_pred             HHHh-cCCcHHHHhh
Confidence            9998 5899999985

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=2.5e-82  Score=794.48  Aligned_cols=569  Identities=26%  Similarity=0.359  Sum_probs=486.6

Q ss_pred             chHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000851           34 SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW  113 (1253)
Q Consensus        34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (1253)
                      ++.++++++|.+++++. +++.+++.++..++.+..|++++.++|.+.... +. . ......++++++++.++..++.+
T Consensus         8 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~   83 (592)
T PRK10790          8 WPTLKRLLAYGSPWRKP-LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKG-NL-P-LGLVAGLAAAYVGLQLLAAGLHY   83 (592)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc-c-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            44566677777666443 456677777777888888889999999764321 11 0 11111112223333445566778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT  193 (1253)
Q Consensus       114 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1253)
                      +..++....+.++..++|.++|+++++.|+++|++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++
T Consensus        84 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (592)
T PRK10790         84 AQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFS  162 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999998 59999999999999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000851          194 SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK  273 (1253)
Q Consensus       194 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~  273 (1253)
                      ++|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...
T Consensus       163 ~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~  242 (592)
T PRK10790        163 LDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARM  242 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888887888888888888888889999999999999999999999999999999998888888777


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          274 KSGVAKGIG-VGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISI  352 (1253)
Q Consensus       274 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~  352 (1253)
                      +..+..+.. ..+..++..+..+++++++++ +..|.+++|.+++++.+......|+..+...+..++++..+++|+.++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~  321 (592)
T PRK10790        243 QTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFEL  321 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766655543 333334433333333334444 678999999999988888888889999999999999999999999999


Q ss_pred             HhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCC
Q 000851          353 IKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS  432 (1253)
Q Consensus       353 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~  432 (1253)
                      ++.+++.. .  ..  ..+...++|+|+||+|+|+++ +++|+|+||++++||++||||+||||||||+++|+|+|+|++
T Consensus       322 l~~~~~~~-~--~~--~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~  395 (592)
T PRK10790        322 MDGPRQQY-G--ND--DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE  395 (592)
T ss_pred             hcCCCccC-C--CC--ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence            97654321 1  11  112234679999999999753 459999999999999999999999999999999999999999


Q ss_pred             cEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCC
Q 000851          433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG  512 (1253)
Q Consensus       433 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g  512 (1253)
                      |+|++||+|+++++.+++|++|+||||||++|++||+|||++|+ ++++++++++|+.++++++++++|+||||.+||+|
T Consensus       396 G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g  474 (592)
T PRK10790        396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQG  474 (592)
T ss_pred             ceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence            99999999999999999999999999999999999999999998 68899999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 000851          513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE  592 (1253)
Q Consensus       513 ~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~  592 (1253)
                      .+|||||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++
T Consensus       475 ~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~  554 (592)
T PRK10790        475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVE  554 (592)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             eeCcchhhhcCchHHHHHHhhhc
Q 000851          593 SGTHVDLISKGGEYAALVNLQSS  615 (1253)
Q Consensus       593 ~g~~~~l~~~~~~y~~~~~~~~~  615 (1253)
                      .|+|+||+++++.|++++..|..
T Consensus       555 ~G~~~~L~~~~~~y~~l~~~~~~  577 (592)
T PRK10790        555 QGTHQQLLAAQGRYWQMYQLQLA  577 (592)
T ss_pred             EcCHHHHHhCCCHHHHHHHHHhh
Confidence            99999999999999999987643

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=1.9e-82  Score=811.18  Aligned_cols=560  Identities=26%  Similarity=0.347  Sum_probs=487.0

Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          672 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLM  751 (1253)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  751 (1253)
                      ++...++.++.+...++++++..+.....++....+++.......   ......+...++++.++..++.+++.++....
T Consensus       145 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (710)
T TIGR03796       145 LWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR---QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRL  221 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444443333333344445555554332211   11122334445555666778888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000851          752 GEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAV  831 (1253)
Q Consensus       752 ~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv  831 (1253)
                      +.++..++|.++|+++++.|++||+.  +++|++++|+++| +.+++++...+...+.+++.+++++++++.++|+++++
T Consensus       222 ~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li  298 (710)
T TIGR03796       222 QIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI  298 (710)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999974  7999999999988 68999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000851          832 VAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGF  911 (1253)
Q Consensus       832 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1253)
                      +++.+|+.+++.++..+..++..++..+...+..+.+.|+++|+++||++|+|+.+.++|.+...+..+...+...+..+
T Consensus       299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (710)
T TIGR03796       299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI  378 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888888878888888889999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 000851          912 GYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQP  991 (1253)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~  991 (1253)
                      ...+..++..+..++++|+|++++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+.
T Consensus       379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~  458 (710)
T TIGR03796       379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL  458 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence            88888999989999999999999999999999999999998899999999999999999999999999999876554322


Q ss_pred             CCC---C-Cccc-ccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEE
Q 000851          992 DDP---A-SKEV-TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066 (1253)
Q Consensus       992 ~~~---~-~~~~-~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~ 1066 (1253)
                      ...   . .... ++..+.|+|+||+|+|+.. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~  537 (710)
T TIGR03796       459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL  537 (710)
T ss_pred             ccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            110   0 0111 2345789999999999843 45799999999999999999999999999999999999999999999


Q ss_pred             ECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000851         1067 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 1146 (1253)
Q Consensus      1067 idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1146 (1253)
                      +||+|+++++.+++|++|+||||||.+|+|||||||.++.|+.+++++++|++.++++++|.++|+||||.+||+|.+||
T Consensus       538 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS  617 (710)
T TIGR03796       538 FDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS  617 (710)
T ss_pred             ECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 000851         1147 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1226 (1253)
Q Consensus      1147 gGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~ 1226 (1253)
                      |||||||+|||||+++|+|||||||||+||++||+.|.+.|++  .++|+|+||||++++..||+|+||++|+|+|.|+|
T Consensus       618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~  695 (710)
T TIGR03796       618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTH  695 (710)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCH
Confidence            9999999999999999999999999999999999999999987  58999999999999999999999999999999999


Q ss_pred             hHHhhcccchHHHHH
Q 000851         1227 EQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1227 ~eLl~~~~g~y~~L~ 1241 (1253)
                      +||++ ++|.|++|+
T Consensus       696 ~~Ll~-~~~~y~~l~  709 (710)
T TIGR03796       696 EELWA-VGGAYARLI  709 (710)
T ss_pred             HHHHH-cCCcHHHHh
Confidence            99998 689999987

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=3.9e-82  Score=786.12  Aligned_cols=565  Identities=23%  Similarity=0.307  Sum_probs=483.0

Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCch-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          671 ELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDS-QIKRVVDQVALIFVGLAVVTIPVYLLQHYFYT  749 (1253)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  749 (1253)
                      +++++.++.++.+.++++++++..+.....+..++.+++........ ........+...+++++++..++.++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (574)
T PRK11160          6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH   85 (574)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666666666666655555556666666644321110 00000111223344555667778888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000851          750 LMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLA  829 (1253)
Q Consensus       750 ~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  829 (1253)
                      ..+.+...++|.++|++++++|.+||++  +++|++++|+++|++.++.++...+..++.+++.++++++++++++|+++
T Consensus        86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  163 (574)
T PRK11160         86 DATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA  163 (574)
T ss_pred             HHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999974  78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000851          830 AVVAASLPLLIGA-FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHI  908 (1253)
Q Consensus       830 lv~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~  908 (1253)
                      +++++++|+++++ .++..+..++..++.++...+..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+..+.
T Consensus       164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  243 (574)
T PRK11160        164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL  243 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888876553 355566667777788888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000851          909 SGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLII-TALAVAETLALAPDIVKGSQALGPVFGILYRKT  987 (1253)
Q Consensus       909 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~  987 (1253)
                      .++...+.+++..+..++.+|+|+.++ .|.++.|.+++++.+... ...++..+...+..+..+..+.+|+.++++.++
T Consensus       244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~  322 (574)
T PRK11160        244 TGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP  322 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            888888888888888888899999884 788999998877665433 344666777788888899999999999987655


Q ss_pred             cCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEE
Q 000851          988 AIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067 (1253)
Q Consensus       988 ~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~i 1067 (1253)
                      +.+....  ....+..+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus       323 ~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i  399 (574)
T PRK11160        323 EVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL  399 (574)
T ss_pred             CCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            4221111  1112234679999999999743 347999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000851         1068 DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147 (1253)
Q Consensus      1068 dG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSg 1147 (1253)
                      ||+|+++++.+++|++|+||||||++|++||+|||.++.++.+|+++++|++.+++++++++ |+||||.+||+|.+|||
T Consensus       400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg  478 (574)
T PRK11160        400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG  478 (574)
T ss_pred             CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChh
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      |||||+|||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+
T Consensus       479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~  558 (574)
T PRK11160        479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQ  558 (574)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHH
Confidence            99999999999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             HHhhcccchHHHHHHH
Q 000851         1228 QLLRKENGIYKQLIRL 1243 (1253)
Q Consensus      1228 eLl~~~~g~y~~L~~~ 1243 (1253)
                      ||++ ++|.|++||+.
T Consensus       559 ~l~~-~~g~y~~l~~~  573 (574)
T PRK11160        559 ELLA-QQGRYYQLKQR  573 (574)
T ss_pred             HHHh-cCcHHHHHHhh
Confidence            9998 68999999863

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.9e-83  Score=722.26  Aligned_cols=573  Identities=26%  Similarity=0.341  Sum_probs=476.2

Q ss_pred             chHHHHHHHhhchhh----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHH
Q 000851           34 SGSFLSLFAAADKID----CVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVAL  109 (1253)
Q Consensus        34 ~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (1253)
                      ....+.+..|..+..    +..++.++++.+.+.......|.+++.++|.+......+ ............+.+..+...
T Consensus        10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~   88 (591)
T KOG0057|consen   10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSS   88 (591)
T ss_pred             hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHH
Confidence            344556666554432    223344444445556777777888999999874222112 112222233344555666778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          110 VSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFA  189 (1253)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~  189 (1253)
                      ++..++...+.++.+++.++.-.++|.|++.+++++|.+ ..+|++.+.+..-...|..++...+..++..++.+.....
T Consensus        89 ~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~-~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~  167 (591)
T KOG0057|consen   89 VFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS-RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSG  167 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC-CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999987 5999999999999999999988887777776665544443


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 000851          190 VG-FTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEA  268 (1253)
Q Consensus       190 ~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~  268 (1253)
                      .+ .-..+..+++.+..+.....+......+..+..++..++.+.+.+.+.|.+.|..+||+||.|++|.++|.....++
T Consensus       168 ~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~  247 (591)
T KOG0057|consen  168 ILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTY  247 (591)
T ss_pred             HHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHH
Confidence            32 33455566666555555555555555666666677778888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          269 LKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAAN  348 (1253)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~r  348 (1253)
                      .+...+.....++.......+.......+.+.|..-+.+|.+|+|+++.....+.++..|+..+...+..+.++..-+.-
T Consensus       248 ~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~  327 (591)
T KOG0057|consen  248 ERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRT  327 (591)
T ss_pred             HHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH
Confidence            99999888887777766666666677777777888888999999999887766777778999999999888888888777


Q ss_pred             HHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccC
Q 000851          349 IISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       349 i~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~  428 (1253)
                      .+...+...++.    ..+.+....++.|+|+||+|+|+.+ +++|+++||+|++||++||||+|||||||++++|.||+
T Consensus       328 ~~~l~~~~~~i~----~~~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~  402 (591)
T KOG0057|consen  328 LFILLEVDEDIQ----EAALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF  402 (591)
T ss_pred             HHhhhhhhhhhh----hccCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            776554433222    1112233445789999999999743 34999999999999999999999999999999999999


Q ss_pred             CCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccc
Q 000851          429 EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV  508 (1253)
Q Consensus       429 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~  508 (1253)
                      + ++|+|+|||+|+++++.+++|+.|||||||..||++||.+||.||+|.+++|++.++|+.+++||-+.++|+||+|.|
T Consensus       403 d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~V  481 (591)
T KOG0057|consen  403 D-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLV  481 (591)
T ss_pred             c-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhH
Confidence            9 999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 000851          509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG  588 (1253)
Q Consensus       509 g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G  588 (1253)
                      ||+|..|||||||||+||||+++||||++||||||+||.+||+.+.+.+.+...+||+|+|+||+++++++|+|+++++|
T Consensus       482 GerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG  561 (591)
T KOG0057|consen  482 GERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNG  561 (591)
T ss_pred             hhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEEEeeCcchhhhcCchHHHHHHhhh
Q 000851          589 QVVESGTHVDLISKGGEYAALVNLQS  614 (1253)
Q Consensus       589 ~i~~~g~~~~l~~~~~~y~~~~~~~~  614 (1253)
                      ++.|.|+|+||+++++.|+++|..|.
T Consensus       562 ~v~e~gth~ell~~s~~~~~~w~~~~  587 (591)
T KOG0057|consen  562 TVKEYGTHSELLAPSELYADLWTTQT  587 (591)
T ss_pred             eeEEeccHHHHhhhhhHHHHHhcccc
Confidence            99999999999998899999997654

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=8.6e-82  Score=788.59  Aligned_cols=565  Identities=32%  Similarity=0.470  Sum_probs=508.9

Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           38 LSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVA  117 (1253)
Q Consensus        38 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (1253)
                      ++++++.++++ ..++++++++++.+++.+..|++++.++|......  .   ...+...+..++++.++..++.++..+
T Consensus         3 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~---~~~~~~~~~~~~~~~i~~~~~~~~~~~   76 (571)
T TIGR02203         3 RRLWSYVRPYK-AGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR--D---RSVLWWVPLVVIGLAVLRGICSFVSTY   76 (571)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--c---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666654 35667778888888888888999999998654311  1   122222333444555566778888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          118 FWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQ  197 (1253)
Q Consensus       118 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1253)
                      +..+.+.++..++|..+|+++++.|.++|++ .++|++++|+++|++.+++++...+..++.+++.+++.++++++++|.
T Consensus        77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  155 (571)
T TIGR02203        77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR-QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQ  155 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999987 589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          198 LTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGV  277 (1253)
Q Consensus       198 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~  277 (1253)
                      +++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+++.|+.+.++|++..++..+...+..+
T Consensus       156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (571)
T TIGR02203       156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS  235 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 000851          278 AKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENS  357 (1253)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  357 (1253)
                      ..+....+..++..+..++++++|++++.+|.+|+|.++++..++.....|+..+...+..+++++.+.+|+.++++.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~  315 (571)
T TIGR02203       236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP  315 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88888888888888888899999999999999999999999888888889999999999999999999999999998665


Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEE
Q 000851          358 HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL  437 (1253)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~  437 (1253)
                      +.+ .  . ....++..+.|+++||+|+|++.++++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|++
T Consensus       316 ~~~-~--~-~~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i  391 (571)
T TIGR02203       316 EKD-T--G-TRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL  391 (571)
T ss_pred             CCC-C--C-CCCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence            432 1  1 11112234679999999999765456999999999999999999999999999999999999999999999


Q ss_pred             CCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCC
Q 000851          438 DGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS  516 (1253)
Q Consensus       438 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS  516 (1253)
                      ||+|+++++.+++|++|+||||+|++|++|++|||.++++ +.++++++++++.+++++++.++|+|+||.+||+|.+||
T Consensus       392 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LS  471 (571)
T TIGR02203       392 DGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS  471 (571)
T ss_pred             CCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCC
Confidence            9999999999999999999999999999999999999987 789999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCc
Q 000851          517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH  596 (1253)
Q Consensus       517 gGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~  596 (1253)
                      |||||||+||||++++|+|+|||||||+||+++++.+.+.|.+..+++|+|+||||++.+..||+|++|++|++++.|+|
T Consensus       472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~  551 (571)
T TIGR02203       472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTH  551 (571)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCH
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             chhhhcCchHHHHHHhh
Q 000851          597 VDLISKGGEYAALVNLQ  613 (1253)
Q Consensus       597 ~~l~~~~~~y~~~~~~~  613 (1253)
                      ++++++++.|+++++.+
T Consensus       552 ~~l~~~~~~~~~~~~~~  568 (571)
T TIGR02203       552 NELLARNGLYAQLHNMQ  568 (571)
T ss_pred             HHHHHcCCHHHHHHHHh
Confidence            99999999999988754

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=2.6e-81  Score=779.60  Aligned_cols=566  Identities=27%  Similarity=0.383  Sum_probs=493.9

Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000851           36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIG  115 (1253)
Q Consensus        36 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (1253)
                      .++++++|.+++++ .++++++++++..++.+..|++++.++|.+....    .   .. ...+.+++++++..+..++.
T Consensus         6 ~~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~----~---~~-~~~~~~~~~~~~~~~~~~~~   76 (585)
T TIGR01192         6 VYVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKS----D---VL-PTLALWAGFGVFNTIAYVLV   76 (585)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----c---HH-HHHHHHHHHHHHHHHHHHHH
Confidence            35678888887754 4566777788888888889999999999764311    1   01 11111222223334444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          116 VAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSV  195 (1253)
Q Consensus       116 ~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (1253)
                      .++..+.+.++..++|.++|+|++++|++||++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++
T Consensus        77 ~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  155 (585)
T TIGR01192        77 AREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMD  155 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555666666777789999999999999998 5899999999999999999998888888888888888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000851          196 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS  275 (1253)
Q Consensus       196 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~  275 (1253)
                      |.+++++++++|+.+++...+.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.
T Consensus       156 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (585)
T TIGR01192       156 WRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPV  235 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000851          276 GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKE  355 (1253)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~  355 (1253)
                      .+..+....+..++..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..++++..+++|+.++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~  315 (585)
T TIGR01192       236 LDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDS  315 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            78777777777777777888889999999999999999999988888778889999999999999999999999999986


Q ss_pred             cCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEE
Q 000851          356 NSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI  435 (1253)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i  435 (1253)
                      +++.+ . .......+...+.|+++||+|+|++. +++|+|+||++++||++||+||||||||||+++|+|+|+|++|+|
T Consensus       316 ~~~~~-~-~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  392 (585)
T TIGR01192       316 VFQRE-E-PADAPELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI  392 (585)
T ss_pred             Ccccc-C-CccCCCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE
Confidence            54432 1 11111112234579999999999753 348999999999999999999999999999999999999999999


Q ss_pred             EECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCC
Q 000851          436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL  515 (1253)
Q Consensus       436 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L  515 (1253)
                      .+||.|+++++.+++|++++||+|+|++|++|++|||.++.|+.++++++++++.+++++++.++|+|++|.+|++|.+|
T Consensus       393 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L  472 (585)
T TIGR01192       393 LIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL  472 (585)
T ss_pred             EECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC
Confidence            99999999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeC
Q 000851          516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT  595 (1253)
Q Consensus       516 SgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~  595 (1253)
                      |||||||++|||||+++|++||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+
T Consensus       473 SgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~  552 (585)
T TIGR01192       473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGS  552 (585)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECC
Confidence            99999999999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             cchhhhcCchHHHHHHhhh
Q 000851          596 HVDLISKGGEYAALVNLQS  614 (1253)
Q Consensus       596 ~~~l~~~~~~y~~~~~~~~  614 (1253)
                      |+++++++|.|++++..+.
T Consensus       553 ~~~l~~~~~~y~~l~~~~~  571 (585)
T TIGR01192       553 FQELIQKDGRFYKLLRRSG  571 (585)
T ss_pred             HHHHHHCCChHHHHHHhCc
Confidence            9999999999999997663

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=5.8e-82  Score=781.31  Aligned_cols=527  Identities=22%  Similarity=0.282  Sum_probs=455.4

Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           38 LSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVA  117 (1253)
Q Consensus        38 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (1253)
                      ++++++.+++++ .+++++++.++.+++....|++++.++|......    .. .........++++.++..++.++..+
T Consensus         2 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (529)
T TIGR02868         2 LRILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEMP----PV-LYLSVAAVAVRAFGIGRAVFRYLERL   75 (529)
T ss_pred             hhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----hh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677776654 3456666777777777778889999999754211    00 00111111122334455677788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          118 FWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQ  197 (1253)
Q Consensus       118 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1253)
                      +..+.+.++..++|.++|+|++++|.+||++ .++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus        76 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  154 (529)
T TIGR02868        76 VGHDAALRSLGRLRVRVYDRLARLALAGRRR-FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVP  154 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCcccccc-CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            8889999999999999999999999999998 599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          198 LTLLTLAVVPLIAVAGGAYTIT-MSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSG  276 (1253)
Q Consensus       198 l~l~~l~~~pl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~  276 (1253)
                      +++++++.+|++.++...+.++ .++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus       155 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (529)
T TIGR02868       155 AALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAA  234 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888877666455444 456667778888999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000851          277 VAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN  356 (1253)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  356 (1253)
                      +..+...++..++..+..++++|+|++++.+|.+|+|.+++++.+......|+..+...+..++++.++++|+.++++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~  314 (529)
T TIGR02868       235 RATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAK  314 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            88888888888888888888899999999999999999999888877778888898989999999999999999999876


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEE
Q 000851          357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL  436 (1253)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~  436 (1253)
                      ++.++...+.....++..+.|+|+||+|+|++++ ++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~  393 (529)
T TIGR02868       315 GPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT  393 (529)
T ss_pred             CCcCCCCCCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            5432110111111112345799999999998543 599999999999999999999999999999999999999999999


Q ss_pred             ECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCC
Q 000851          437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS  516 (1253)
Q Consensus       437 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS  516 (1253)
                      +||+|++++ .+++|++|+||||||+||++||+|||++|.|+++++++++|++.+++++|+.++|+||||.+||+|.+||
T Consensus       394 i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS  472 (529)
T TIGR02868       394 LDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS  472 (529)
T ss_pred             ECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 000851          517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL  573 (1253)
Q Consensus       517 gGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l  573 (1253)
                      ||||||||||||+++||+|||||||||+||+++|+.|++.+.+..+++|+|+||||+
T Consensus       473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            999999999999999999999999999999999999999999988899999999996

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=2.7e-81  Score=784.84  Aligned_cols=565  Identities=31%  Similarity=0.490  Sum_probs=489.6

Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          672 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLM  751 (1253)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  751 (1253)
                      ++.+.++.++.+++.+++.++........++.+..+++..+.....   .....+..+++++.++..++.++..++....
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   92 (582)
T PRK11176         16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSYCISWV   92 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555444444444434344444455455444322111   1112223334445666777778888888999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000851          752 GEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAV  831 (1253)
Q Consensus       752 ~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv  831 (1253)
                      +.+....+|..+|+++++.|.++|+  +.++|++++|+++|++.++..+...+..++.+++.++++++++++++|+++++
T Consensus        93 ~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~  170 (582)
T PRK11176         93 SGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLI  170 (582)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999997  47899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000851          832 VAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGF  911 (1253)
Q Consensus       832 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1253)
                      +++++|+.++......+.+++..++.++...+..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+..+...+
T Consensus       171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (582)
T PRK11176        171 LIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSI  250 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888878888888888888888889999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 000851          912 GYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQP  991 (1253)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~  991 (1253)
                      ...+.+++..+..++++++|++++..|.+++|+++.++.+......++..+...+..+..+..+.+|+.++++.+++.+.
T Consensus       251 ~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~  330 (582)
T PRK11176        251 SDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE  330 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence            88888888888888999999999999999999999888888888889999999999999999999999998765433221


Q ss_pred             CCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCcc
Q 000851          992 DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 1071 (1253)
Q Consensus       992 ~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~d 1071 (1253)
                      . +  ...++..+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus       331 ~-~--~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~  406 (582)
T PRK11176        331 G-K--RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD  406 (582)
T ss_pred             C-C--cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence            1 1  1122334579999999999743 4579999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1072 IRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNED-ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1072 i~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~-~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      +++++.+++|++|+||||||++|++||||||.++.++ .+|++++++++.++++++++++|+||||.+|++|.+||||||
T Consensus       407 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr  486 (582)
T PRK11176        407 LRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR  486 (582)
T ss_pred             hhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence            9999999999999999999999999999999998754 799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHh
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      |||+|||||+++|+|||||||||+||++||+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|++|+
T Consensus       487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~  566 (582)
T PRK11176        487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELL  566 (582)
T ss_pred             HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             hcccchHHHHHHHhhc
Q 000851         1231 RKENGIYKQLIRLQQD 1246 (1253)
Q Consensus      1231 ~~~~g~y~~L~~~~~~ 1246 (1253)
                      + +++.|++|++.|.+
T Consensus       567 ~-~~~~y~~l~~~~~~  581 (582)
T PRK11176        567 A-QNGVYAQLHKMQFG  581 (582)
T ss_pred             h-CCChHHHHHHHHhc
Confidence            8 57999999987754

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=5e-81  Score=781.44  Aligned_cols=567  Identities=27%  Similarity=0.406  Sum_probs=490.0

Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000851           35 GSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        35 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      ..+++++++.+++++ .+.+.+++.++..++.+..|++++.++|.+....    .    .....+.+++++++..+..++
T Consensus         5 ~~~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~   75 (588)
T PRK13657          5 RLYARVLQYLGAEKR-LGILLAVANVLLAAATFAEPILFGRIIDAISGKG----D----IFPLLAAWAGFGLFNIIAGVL   75 (588)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----c----HHHHHHHHHHHHHHHHHHHHH
Confidence            346677777766543 4455666677777777778888999999764311    1    111112222222333334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      ..++..+...++..++|.++|+|++++|+.+|++ .++|++++|+++|++.+.+.+...+..++..++.+++.+++++++
T Consensus        76 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (588)
T PRK13657         76 VARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFM  154 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666666777789999999999999987 599999999999999999888888888888888888888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      +|.+++++++.+|+..++..++.++.++..++.++..++.++.+.|.++|+++||.|+.++.+.++|.+..++..+...+
T Consensus       155 ~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~  234 (588)
T PRK13657        155 NWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMP  234 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888889999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK  354 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~  354 (1253)
                      .....+....+..++..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..+.++..+++|+.++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~  314 (588)
T PRK13657        235 VLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVED  314 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88877777777777777888888999999999999999999998887778888999999999999999999999999997


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcE
Q 000851          355 ENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK  434 (1253)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~  434 (1253)
                      .+++.+ . .......+...+.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+
T Consensus       315 ~~~~~~-~-~~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~  391 (588)
T PRK13657        315 AVPDVR-D-PPGAIDLGRVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR  391 (588)
T ss_pred             CCcccC-C-CCCCCCcCCCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence            654422 1 11111112234579999999999753 34999999999999999999999999999999999999999999


Q ss_pred             EEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCC
Q 000851          435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ  514 (1253)
Q Consensus       435 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~  514 (1253)
                      |.+||+|+++++.+++|++|+||||+|++|++||+|||++++|+.++++++++++.+++++++.++|+|+||.+|++|.+
T Consensus       392 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~  471 (588)
T PRK13657        392 ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ  471 (588)
T ss_pred             EEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCC
Confidence            99999999999999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEee
Q 000851          515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG  594 (1253)
Q Consensus       515 LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g  594 (1253)
                      |||||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|
T Consensus       472 LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g  551 (588)
T PRK13657        472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG  551 (588)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             CcchhhhcCchHHHHHHhhh
Q 000851          595 THVDLISKGGEYAALVNLQS  614 (1253)
Q Consensus       595 ~~~~l~~~~~~y~~~~~~~~  614 (1253)
                      +|++|+++++.|++++..+.
T Consensus       552 ~~~~l~~~~~~y~~l~~~~~  571 (588)
T PRK13657        552 SFDELVARGGRFAALLRAQG  571 (588)
T ss_pred             CHHHHHHCCChHHHHHHHhh
Confidence            99999999999999987553

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=2.2e-81  Score=779.35  Aligned_cols=544  Identities=26%  Similarity=0.382  Sum_probs=479.8

Q ss_pred             HhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 000851           63 GATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKD  142 (1253)
Q Consensus        63 ~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~  142 (1253)
                      .++....|++++.++|.+....  . . ...+..+...++++.++..++.++..++....+.++..++|.++|+|++++|
T Consensus         8 ~~~~~~~p~~~~~iid~~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~   83 (569)
T PRK10789          8 AMLQLIPPKVVGIIVDGVTEQH--M-T-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH   83 (569)
T ss_pred             HHHHHHHHHHHHHHHHHhccCC--c-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3344455668899999764321  0 1 1112222333334444556677888888888999999999999999999999


Q ss_pred             hhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          143 MSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVG-FTSVWQLTLLTLAVVPLIAVAGGAYTITMS  221 (1253)
Q Consensus       143 ~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~  221 (1253)
                      +++|++ .++|++++|+++|++.++..+...+..++..++.++++++++ ++++|.+++++++++|+.+++...+.++.+
T Consensus        84 ~~~~~~-~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~  162 (569)
T PRK10789         84 PEFYLR-HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH  162 (569)
T ss_pred             HHHHcC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987 589999999999999999888888888888776666666655 589999999999999999999899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          222 TLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYA  301 (1253)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  301 (1253)
                      +..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..+...++...+..++.++++++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  242 (569)
T PRK10789        163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG  242 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888888888777777777777778888999


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEE
Q 000851          302 GILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSE  381 (1253)
Q Consensus       302 ~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  381 (1253)
                      ++++.+|.+|+|.++++..+......|+..+...+..++++.++++|+.++++.+++.+ .   .....+...+.|+++|
T Consensus       243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~-~---~~~~~~~~~~~I~~~~  318 (569)
T PRK10789        243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVK-D---GSEPVPEGRGELDVNI  318 (569)
T ss_pred             HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc-C---CCCCCCCCCCcEEEEE
Confidence            99999999999999999888888888999999999999999999999999998765432 1   1111222346799999


Q ss_pred             EEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccC
Q 000851          382 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP  461 (1253)
Q Consensus       382 v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~  461 (1253)
                      |+|+|+..++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|++||+|+++++..++|++|+||+|+|
T Consensus       319 v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~  398 (569)
T PRK10789        319 RQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP  398 (569)
T ss_pred             EEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence            99999854446999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCc
Q 000851          462 ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA  541 (1253)
Q Consensus       462 ~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~  541 (1253)
                      ++|++|++|||+++.++.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||
T Consensus       399 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp  478 (569)
T PRK10789        399 FLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA  478 (569)
T ss_pred             eeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            99999999999999988999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCchHHHHHHhhhc
Q 000851          542 TSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS  615 (1253)
Q Consensus       542 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~~~~~~  615 (1253)
                      ||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+|++++++++.|++++..|..
T Consensus       479 ts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~  552 (569)
T PRK10789        479 LSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL  552 (569)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhhh
Confidence            99999999999999999988899999999999999999999999999999999999999999999999987643

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=3e-81  Score=797.33  Aligned_cols=548  Identities=25%  Similarity=0.406  Sum_probs=480.4

Q ss_pred             hhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          676 NAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHL  755 (1253)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  755 (1253)
                      .++.++.+...++++++..+.....++.+..+++........   .....+...++++.++..++.+++.++....+.++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (694)
T TIGR03375       142 LKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKA  218 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444445555555544322111   11222333444455566778888999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000851          756 TARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAAS  835 (1253)
Q Consensus       756 ~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~  835 (1253)
                      ..++|..+|++++++|++| +  ++++|++++|+ +|++.+++++...+...+.+++..+.+++++++++|+++++.++.
T Consensus       219 ~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~  294 (694)
T TIGR03375       219 DLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVA  294 (694)
T ss_pred             HHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            9999999999999999998 4  46999999999 799999999999888888888888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000851          836 LPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGV  915 (1253)
Q Consensus       836 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  915 (1253)
                      +|+.++..+...+..++..++..+...+..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+...+..+...+
T Consensus       295 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (694)
T TIGR03375       295 IPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNF  374 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888888888888888899999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 000851          916 SQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPA  995 (1253)
Q Consensus       916 ~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~  995 (1253)
                      .+.+..+..++.+|+|++++..|.+++|.++++..+......++..+...+.++..+..+.+|+.++++.+++.+... .
T Consensus       375 ~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~-~  453 (694)
T TIGR03375       375 AQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT-R  453 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-C
Confidence            888888889999999999999999999999999999999999999999999999999999999999987765432211 1


Q ss_pred             CcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCC
Q 000851          996 SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL 1075 (1253)
Q Consensus       996 ~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i 1075 (1253)
                      ....++..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus       454 ~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~  532 (694)
T TIGR03375       454 FLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI  532 (694)
T ss_pred             CCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC
Confidence            11112345689999999999743 45799999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1076 ~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      +++++|++|+||||||++|+|||+|||.+++++++++++++|++.++++++|+++|+||||.+||+|.+|||||||||+|
T Consensus       533 ~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlal  612 (694)
T TIGR03375       533 DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVAL  612 (694)
T ss_pred             CHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhc
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+++|+|+|+||+++
T Consensus       613 ARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~  689 (694)
T TIGR03375       613 ARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA  689 (694)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence            99999999999999999999999999999999998889999999999999999999999999999999999999874

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=5.9e-81  Score=782.08  Aligned_cols=566  Identities=25%  Similarity=0.358  Sum_probs=479.0

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          670 WELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYT  749 (1253)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  749 (1253)
                      ++++.+.+++++.+.+.+++.++..+.....++.+..+++..+....... .....+.++++++.++..++.+++.++..
T Consensus        12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (592)
T PRK10790         12 KRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLLFN   90 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455566666666666666666666667777777765543221111 11111233344445556677788888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000851          750 LMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLA  829 (1253)
Q Consensus       750 ~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  829 (1253)
                      ..+.+...++|.++|+++++.|.+||+.  .++|++++|+++|++.+++.+...+..++.+++.+++.++++++++|+++
T Consensus        91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  168 (592)
T PRK10790         91 RAAVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMA  168 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999974  78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000851          830 AVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHIS  909 (1253)
Q Consensus       830 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  909 (1253)
                      +++++++|++++......+..+...++.++...+...++.|.++|+++||+|+.++++.+++.+..++..+...+..+..
T Consensus       169 li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (592)
T PRK10790        169 LVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLD  248 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888887777777777777777777888888999999999999999999999999999999888888777776666


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000851          910 GFG-YGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTA  988 (1253)
Q Consensus       910 ~~~-~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~  988 (1253)
                      ++. ..+..++..+...+..++++. +..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~  327 (592)
T PRK10790        249 GFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQ  327 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            543 334444443333333333333 578999999999998888889999999999999999999999999999875433


Q ss_pred             CCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEEC
Q 000851          989 IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 1068 (1253)
Q Consensus       989 ~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~id 1068 (1253)
                      ....    ...+...+.|+|+||+|+||+  +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus       328 ~~~~----~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id  401 (592)
T PRK10790        328 QYGN----DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD  401 (592)
T ss_pred             cCCC----CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence            2111    111223467999999999983  3579999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChh
Q 000851         1069 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148 (1253)
Q Consensus      1069 G~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgG 1148 (1253)
                      |.|+++++++.+|++|+||||||.+|+|||||||.+++ +++|++++++++.++++++|+++|+||||.+|++|.+||||
T Consensus       402 g~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGG  480 (592)
T PRK10790        402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG  480 (592)
T ss_pred             CEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence            99999999999999999999999999999999999997 68999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhH
Q 000851         1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1149 QkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      |||||+|||||+++|+|||||||||+||++||+.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+|
T Consensus       481 qrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~  560 (592)
T PRK10790        481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ  560 (592)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             HhhcccchHHHHHHHhhcc
Q 000851         1229 LLRKENGIYKQLIRLQQDK 1247 (1253)
Q Consensus      1229 Ll~~~~g~y~~L~~~~~~~ 1247 (1253)
                      |++ +++.|+++++.|...
T Consensus       561 L~~-~~~~y~~l~~~~~~~  578 (592)
T PRK10790        561 LLA-AQGRYWQMYQLQLAG  578 (592)
T ss_pred             HHh-CCCHHHHHHHHHhhh
Confidence            998 579999999877543

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-84  Score=713.32  Aligned_cols=504  Identities=31%  Similarity=0.446  Sum_probs=436.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          737 TIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVT  816 (1253)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~  816 (1253)
                      ++++.-+++++...+..-..+++-..+|+|+.++.+.|+-.  ..+|+++....+..+.+. ++.....++.-.+.-+.+
T Consensus       272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v  348 (790)
T KOG0056|consen  272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV  348 (790)
T ss_pred             ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence            34566677777788888889999999999999999999864  678988877766665555 333333333333333333


Q ss_pred             HHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHH
Q 000851          817 AFVIA-FILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASEL  895 (1253)
Q Consensus       817 ~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~  895 (1253)
                      +++.. ..++|+.+++++.+..+.+...........++.+++.....+..+...+++-+.+|||-|+.|++..++|.++.
T Consensus       349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi  428 (790)
T KOG0056|consen  349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI  428 (790)
T ss_pred             hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence            33332 35688899888888777766665555555566667777777778888999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          896 SQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQA  975 (1253)
Q Consensus       896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  975 (1253)
                      ..+++..++....-.+.+.+...+..+..+..-.+..+.|..+..+.|+++....+++...+|+.........+++...-
T Consensus       429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD  508 (790)
T KOG0056|consen  429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID  508 (790)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence            99999998887777777766666666666555566666777889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 000851          976 LGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 1055 (1253)
Q Consensus       976 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~ 1055 (1253)
                      +++.+++++++++... .|...+....+|.|+|+||+|.|.  |.+|||+||||+++||+++|+|||||+||||++++|+
T Consensus       509 mEnmfdllkee~eVvd-~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf  585 (790)
T KOG0056|consen  509 MENMFDLLKEEPEVVD-LPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF  585 (790)
T ss_pred             HHHHHHHhhcCchhhc-CCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence            9999999987665432 223333345679999999999997  5679999999999999999999999999999999999


Q ss_pred             ccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 000851         1056 RFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135 (1253)
Q Consensus      1056 r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gld 1135 (1253)
                      ||||.++|.|+|||+||+.+..++||++||+||||.+||++||.+||.|+.|.+++||+.+|++.|++||-|.++|+||+
T Consensus       586 Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~  665 (790)
T KOG0056|consen  586 RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYN  665 (790)
T ss_pred             HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEE
Q 000851         1136 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVL 1215 (1253)
Q Consensus      1136 t~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl 1215 (1253)
                      |.|||+|-.||||||||+||||+++++|.|++||||||+||..||+.||.+|.+..+++|.|+|||||+||.+||.|+|+
T Consensus       666 t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi  745 (790)
T KOG0056|consen  666 TRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVI  745 (790)
T ss_pred             hhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCEEEEecChhHHhhcccchHHHHHHHhhc
Q 000851         1216 QQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1246 (1253)
Q Consensus      1216 ~~G~ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1246 (1253)
                      ++|+|+|.|+|+||+++.+|.|++||+.|+.
T Consensus       746 ~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa  776 (790)
T KOG0056|consen  746 SNGRIVERGRHEELLKRDGGAYADMWQAQQA  776 (790)
T ss_pred             eCCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence            9999999999999999889999999987653

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=2.8e-80  Score=787.64  Aligned_cols=558  Identities=29%  Similarity=0.432  Sum_probs=490.0

Q ss_pred             hchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          677 AAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLT  756 (1253)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  756 (1253)
                      ++.++.+...++++++..+.....++.+..+++.......   ......+...++++.++..++.+++.++....+.++.
T Consensus       135 ~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  211 (694)
T TIGR01846       135 IRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRID  211 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443444444555555554432211   1122334445555666677888899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000851          757 ARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASL  836 (1253)
Q Consensus       757 ~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~  836 (1253)
                      .++|.++|++++++|++||+.  +++|++++|+ +|++.+++++...+...+.+++..++.++++++++|++++++++++
T Consensus       212 ~~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~  288 (694)
T TIGR01846       212 VELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSL  288 (694)
T ss_pred             HHHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999974  8999999999 6999999999988888888888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000851          837 PLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVS  916 (1253)
Q Consensus       837 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  916 (1253)
                      |+++++.+...+..++..++..+...+..+.+.|+++|+++||++|.|+.+.++|.+..++..+...+..+...+...+.
T Consensus       289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (694)
T TIGR01846       289 VCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAI  368 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888888887777778888888999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 000851          917 QLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPAS  996 (1253)
Q Consensus       917 ~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~  996 (1253)
                      +++..+..++.+|+|++++..|.+|+|+++++..+......++..+...+..+..+..+.+|+.++++.+++.+...  .
T Consensus       369 ~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--~  446 (694)
T TIGR01846       369 ELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAG--L  446 (694)
T ss_pred             HHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCC--C
Confidence            99988999999999999999999999999999888889999999999999999999999999999987654432211  1


Q ss_pred             cccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC
Q 000851          997 KEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN 1076 (1253)
Q Consensus       997 ~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~ 1076 (1253)
                      ...+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++
T Consensus       447 ~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~  525 (694)
T TIGR01846       447 AALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD  525 (694)
T ss_pred             CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC
Confidence            1122335689999999999743 356999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1077 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      .+++|++|+||||||.+|++||+|||.+++++.+++++++|++.++++++++++|+||||.+|++|.+||||||||++||
T Consensus       526 ~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lA  605 (694)
T TIGR01846       526 PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIA  605 (694)
T ss_pred             HHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccch
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGI 1236 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~ 1236 (1253)
                      |||+++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||++ ++|.
T Consensus       606 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~-~~~~  684 (694)
T TIGR01846       606 RALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA-LQGL  684 (694)
T ss_pred             HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH-cCCh
Confidence            999999999999999999999999999999999888999999999999999999999999999999999999998 5899


Q ss_pred             HHHHHHHh
Q 000851         1237 YKQLIRLQ 1244 (1253)
Q Consensus      1237 y~~L~~~~ 1244 (1253)
                      |++|++.|
T Consensus       685 y~~l~~~~  692 (694)
T TIGR01846       685 YARLWQQQ  692 (694)
T ss_pred             HHHHHHhh
Confidence            99999865

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=7.5e-80  Score=771.37  Aligned_cols=569  Identities=34%  Similarity=0.521  Sum_probs=497.1

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGV  116 (1253)
Q Consensus        37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (1253)
                      ++.++++.+++++ .+.+.+++.++.+++....|++++.++|.+.... +    ...+.....+++++.++..++.+++.
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (576)
T TIGR02204         6 LAALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKD-S----SGLLNRYFAFLLVVALVLALGTAARF   79 (576)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc-c----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677666543 4455666777778888888889999999743211 1    11122222233333344556677788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          117 AFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVW  196 (1253)
Q Consensus       117 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (1253)
                      ++..+.+.++..++|..+++++++.|.++|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus        80 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (576)
T TIGR02204        80 YLVTWLGERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP  158 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            88889999999999999999999999999987 58999999999999999999998888989999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          197 QLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSG  276 (1253)
Q Consensus       197 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~  276 (1253)
                      .+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus       159 ~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (576)
T TIGR02204       159 KLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRI  238 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888889999999999999999999999999999999999999999999999999998888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000851          277 VAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN  356 (1253)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  356 (1253)
                      ........+..++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+++|+.++++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~  318 (576)
T TIGR02204       239 RTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAE  318 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            77766666666666677778889999999999999999988888888888899999999999999999999999999865


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEE
Q 000851          357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI  435 (1253)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i  435 (1253)
                      ++.+.. ........+..+.|+++||+|+|++++ +++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|
T Consensus       319 ~~~~~~-~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I  397 (576)
T TIGR02204       319 PDIKAP-AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI  397 (576)
T ss_pred             CcCCCC-CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence            542211 111111112235799999999998543 459999999999999999999999999999999999999999999


Q ss_pred             EECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCC
Q 000851          436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL  515 (1253)
Q Consensus       436 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L  515 (1253)
                      ++||.|+++++.+++|++|+||||+|++|++||+|||.+|.|+.++++++++++.++++++++++|+|++|.+||+|.+|
T Consensus       398 ~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~L  477 (576)
T TIGR02204       398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL  477 (576)
T ss_pred             EECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcC
Confidence            99999999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeC
Q 000851          516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT  595 (1253)
Q Consensus       516 SgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~  595 (1253)
                      |||||||++||||++++|++||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.+|+|++|++|++++.|+
T Consensus       478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~  557 (576)
T TIGR02204       478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGT  557 (576)
T ss_pred             CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeec
Confidence            99999999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             cchhhhcCchHHHHHHhh
Q 000851          596 HVDLISKGGEYAALVNLQ  613 (1253)
Q Consensus       596 ~~~l~~~~~~y~~~~~~~  613 (1253)
                      |++++++++.|++++..|
T Consensus       558 ~~~l~~~~~~~~~l~~~~  575 (576)
T TIGR02204       558 HAELIAKGGLYARLARLQ  575 (576)
T ss_pred             HHHHHHcCChHHHHHhhc
Confidence            999999999999988654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-81  Score=707.29  Aligned_cols=514  Identities=29%  Similarity=0.438  Sum_probs=443.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHH
Q 000851          724 DQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADR  803 (1253)
Q Consensus       724 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~  803 (1253)
                      ......|.++.++..++.-++.+++.++.+++.++.-.++|+++++++++||-.  ..+|.+.+....-...+...+...
T Consensus        74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~--~~tG~l~~~idRgsraI~~vl~~~  151 (591)
T KOG0057|consen   74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS--RGTGALNRIIDRGSRAISFVLSAM  151 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC--CCcchHHHHHHhhhhHHHHHHHHH
Confidence            345667888888899999999999999999999999999999999999999964  678998888888888777776665


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcC
Q 000851          804 LSIIVQNVALTVTAFVIA-FILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYG  882 (1253)
Q Consensus       804 l~~~~~~~~~~~~~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~  882 (1253)
                      +..++..++.+....... .-++...+++.+..+..+..+.+....+..++.++++++...+.+.+.|++.|.++||+||
T Consensus       152 V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfN  231 (591)
T KOG0057|consen  152 VFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFN  231 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcc
Confidence            555555544433333222 2334455555555555555555555666667778889999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 000851          883 IEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAET  962 (1253)
Q Consensus       883 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~  962 (1253)
                      .|++..++|...+.++.+...+.....++......++.....+.+.+++..=+..+..++|+++.......+...++..+
T Consensus       232 nE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~L  311 (591)
T KOG0057|consen  232 NEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFL  311 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHH
Confidence            99999999999999999999998888888888888888788888888888878899999999998888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcC
Q 000851          963 LALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQ 1042 (1253)
Q Consensus       963 ~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~ 1042 (1253)
                      ...+.++.++..-+...+...+........   ..+....++.|+|+||+|+|+  |+++||+++||+|++||||||||+
T Consensus       312 g~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~  386 (591)
T KOG0057|consen  312 GSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGS  386 (591)
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECC
Confidence            888888877776666665543322211110   112233467899999999997  456799999999999999999999


Q ss_pred             CCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhc
Q 000851         1043 SGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 1122 (1253)
Q Consensus      1043 SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~ 1122 (1253)
                      |||||||++++|+||++ ++|+|+|||+|+++++++.+|+.|||||||..||++||.+||.||++.+++||+.++||+++
T Consensus       387 nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~  465 (591)
T KOG0057|consen  387 NGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAG  465 (591)
T ss_pred             CCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcC
Confidence            99999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccC
Q 000851         1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHR 1202 (1253)
Q Consensus      1123 l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHr 1202 (1253)
                      +||.|.++|+||+|.|||+|..||||||||++||||++++|+|+++|||||+||.+||+.+.+++.....++|+|+|+||
T Consensus       466 ~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~  545 (591)
T KOG0057|consen  466 LHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHR  545 (591)
T ss_pred             cHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             chhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHHHHhhc
Q 000851         1203 LSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1246 (1253)
Q Consensus      1203 l~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1246 (1253)
                      ++++++||+|+|||+|+++|+|+|+||++ +.+.|+++|..|..
T Consensus       546 l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~~  588 (591)
T KOG0057|consen  546 LDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQTS  588 (591)
T ss_pred             chhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccccc
Confidence            99999999999999999999999999999 78999999987643

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-79  Score=696.87  Aligned_cols=504  Identities=25%  Similarity=0.362  Sum_probs=432.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000851          732 GLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNV  811 (1253)
Q Consensus       732 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~  811 (1253)
                      ++++...+..++..++.+.+..++...+|.++|+++...+..-..  ...+|+++||++.|++.+|+.+-..+...+..+
T Consensus        66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~  143 (573)
T COG4987          66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVAL  143 (573)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence            456667777788888889999999999999999999877666554  478999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHH
Q 000851          812 ALTVTAFVIAFILSWRLAAVVAASLPL-LIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQ  890 (1253)
Q Consensus       812 ~~~~~~~~~~~~~~~~l~lv~l~~~pl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~  890 (1253)
                      +...+..+..-+++|.+++.+..++.+ ++++.++..++-++..+...+......+++.|.+.|....+.||.++.+.+.
T Consensus       144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~  223 (573)
T COG4987         144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA  223 (573)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence            777777777778888888766654443 4445566667777788888888899999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000851          891 FASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETL-ALAPDI  969 (1253)
Q Consensus       891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~  969 (1253)
                      +....+.+.+...+..++..+.....+++..+..+..+.+....+..|..+.-....+++.+.....+...+. ....+.
T Consensus       224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~l  303 (573)
T COG4987         224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHL  303 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHh
Confidence            9999999999999999999999988888887777744444444444555553333333333333333333333 444666


Q ss_pred             HHHHHHHHHHHHHhcccccCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHH
Q 000851          970 VKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKST 1049 (1253)
Q Consensus       970 ~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKST 1049 (1253)
                      .+...+..|+.++.+.+++...+.+.   .+.....++++||+|+||++ .+++|+|+||++++||||||+|||||||||
T Consensus       304 gq~~~Sa~Rl~~i~~q~~e~~~~~~~---~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKST  379 (573)
T COG4987         304 GQVIASARRLNDILDQKPEVTFPDEQ---TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKST  379 (573)
T ss_pred             hHHHHHHHHHhhhccCCcccCCCccc---cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHH
Confidence            77788889999888777665443111   11111279999999999964 557999999999999999999999999999


Q ss_pred             HHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHh
Q 000851         1050 VISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 1129 (1253)
Q Consensus      1050 L~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~ 1129 (1253)
                      ++++|.|.|+|++|+|.++|.|++.++.+++|+.|++++|.++||++|+|+||.+++|++||||+|++++++++++++++
T Consensus       380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~  459 (573)
T COG4987         380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES  459 (573)
T ss_pred             HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhcc
Q 000851         1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNA 1209 (1253)
Q Consensus      1130 lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~ 1209 (1253)
                      .|+||||++||+|.+||||||||+||||+||+|.+++||||||.+||++||++|++.|.+..+|||+|+||||+..++.|
T Consensus       460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~  539 (573)
T COG4987         460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM  539 (573)
T ss_pred             ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCEEEEecChhHHhhcccchHHHHHH
Q 000851         1210 DKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1242 (1253)
Q Consensus      1210 D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~ 1242 (1253)
                      |||+|||+|+++|+|+|++|++ ++|.|++|++
T Consensus       540 drIivl~~Gkiie~G~~~~Ll~-~~g~~~~l~q  571 (573)
T COG4987         540 DRIIVLDNGKIIEEGTHAELLA-NNGRYKRLYQ  571 (573)
T ss_pred             CEEEEEECCeeeecCCHHhhhc-cccHHHHHhc
Confidence            9999999999999999999999 7999999986

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=3.8e-79  Score=764.70  Aligned_cols=563  Identities=33%  Similarity=0.538  Sum_probs=505.2

Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          672 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLM  751 (1253)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  751 (1253)
                      ++++.++.++.++++.+++++.++..+..++.+..+++..+....   ......+..+++++.++..++.+++.++....
T Consensus         5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   81 (571)
T TIGR02203         5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWV   81 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455666777777777777777777777777776665443221   11222334456666777778888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000851          752 GEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAV  831 (1253)
Q Consensus       752 ~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv  831 (1253)
                      +.++...+|..+++++++.|.++|++  .++|++++|+++|++.+++.+...+..++.+++.++++++++++++|.++++
T Consensus        82 ~~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i  159 (571)
T TIGR02203        82 SNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI  159 (571)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999974  7899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000851          832 VAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGF  911 (1253)
Q Consensus       832 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1253)
                      ++++.|+.++..++..+..++..++..+...+..+.+.|.++|+++||+++.++++.++|.+..++..+...+..+..++
T Consensus       160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (571)
T TIGR02203       160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI  239 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888888888888999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 000851          912 GYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQP  991 (1253)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~  991 (1253)
                      ...+..++..+..++.+++|+.++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~  319 (571)
T TIGR02203       240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT  319 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            88888998888999999999999999999999999999999999999999999999999999999999998875543221


Q ss_pred             CCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCcc
Q 000851          992 DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 1071 (1253)
Q Consensus       992 ~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~d 1071 (1253)
                      ..   .+..+..+.|+++||+|+|+++ +.++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|++||+|
T Consensus       320 ~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~  395 (571)
T TIGR02203       320 GT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD  395 (571)
T ss_pred             CC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence            11   1112234679999999999754 4579999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhcceEEEccCCCcccccHHHHhccCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1072 IRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1072 i~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      +++++.+++|++|+||||||++|+|||||||.++++ +.++++++++++.+++++++.++|+||||++|++|.+||||||
T Consensus       396 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr  475 (571)
T TIGR02203       396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR  475 (571)
T ss_pred             HHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence            999999999999999999999999999999999986 7999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHh
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      ||||||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+
T Consensus       476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~  555 (571)
T TIGR02203       476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL  555 (571)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             hcccchHHHHHHHh
Q 000851         1231 RKENGIYKQLIRLQ 1244 (1253)
Q Consensus      1231 ~~~~g~y~~L~~~~ 1244 (1253)
                      + .++.|+++++.+
T Consensus       556 ~-~~~~~~~~~~~~  568 (571)
T TIGR02203       556 A-RNGLYAQLHNMQ  568 (571)
T ss_pred             H-cCCHHHHHHHHh
Confidence            8 478999998765

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=7.5e-79  Score=761.77  Aligned_cols=565  Identities=28%  Similarity=0.415  Sum_probs=482.5

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          669 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFY  748 (1253)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  748 (1253)
                      +++++++.++.++.+.+.++++++..+.....++.+..+++......      ....+..+++++.++..+..++..++.
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (588)
T PRK13657          7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG------DIFPLLAAWAGFGLFNIIAGVLVARHA   80 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555666666666666666666666666666666666554321      111122223333333333444444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000851          749 TLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL  828 (1253)
Q Consensus       749 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  828 (1253)
                      .....++..+++.++|+++++.|..+|+.  .++|++++|+++|++.+...+...+...+..++..++.+++++.++|.+
T Consensus        81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (588)
T PRK13657         81 DRLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRL  158 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666677789999999999999974  7899999999999999998888888888888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000851          829 AAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHI  908 (1253)
Q Consensus       829 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~  908 (1253)
                      ++++++++|+.+++.....+..+...++..+...+..+.+.|.++|+++||+|+.++.+.+++.+..++..+...+...+
T Consensus       159 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (588)
T PRK13657        159 SLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSW  238 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888877777777777777777888889999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000851          909 SGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTA  988 (1253)
Q Consensus       909 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~  988 (1253)
                      ..+...+.+++..+..++++++|++++.+|.+++|++++++.+......++..+...+..+..+..+.+++.++++.+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~  318 (588)
T PRK13657        239 WALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPD  318 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            88888888888888889999999999999999999999998888888889999999999999999999999988765443


Q ss_pred             CCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEEC
Q 000851          989 IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 1068 (1253)
Q Consensus       989 ~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~id 1068 (1253)
                      .+.. +......+..+.|+++||+|+||+  +.++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|.+|
T Consensus       319 ~~~~-~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~  395 (588)
T PRK13657        319 VRDP-PGAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID  395 (588)
T ss_pred             cCCC-CCCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence            2111 111111223457999999999974  2469999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChh
Q 000851         1069 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148 (1253)
Q Consensus      1069 G~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgG 1148 (1253)
                      |.|+++++.+++|++|+||||||.+|+|||||||.+++|+.+|++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus       396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG  475 (588)
T PRK13657        396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG  475 (588)
T ss_pred             CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence            99999999999999999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhH
Q 000851         1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1149 QkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      |||||||||||+++|+|||||||||+||+++|+.|.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|++
T Consensus       476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~  555 (588)
T PRK13657        476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE  555 (588)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999999878999999999999999999999999999999999999


Q ss_pred             HhhcccchHHHHHHHhh
Q 000851         1229 LLRKENGIYKQLIRLQQ 1245 (1253)
Q Consensus      1229 Ll~~~~g~y~~L~~~~~ 1245 (1253)
                      |++ +++.|++|++.+.
T Consensus       556 l~~-~~~~y~~l~~~~~  571 (588)
T PRK13657        556 LVA-RGGRFAALLRAQG  571 (588)
T ss_pred             HHH-CCChHHHHHHHhh
Confidence            998 5799999998664

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=5.5e-79  Score=754.76  Aligned_cols=525  Identities=26%  Similarity=0.323  Sum_probs=464.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           52 MFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLR  131 (1253)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR  131 (1253)
                      +.++++++++.+++.+..|+++++++|.+.... .  . ...+..+...+++++++..++.++..++..+.+.++..++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr   80 (529)
T TIGR02857         5 LALLGLLGALGALLIIAQAWLLARVIDGLISAG-E--P-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR   80 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C--C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777788888888999999999863111 0  1 12233333444555566778888999999999999999999


Q ss_pred             HHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          132 LKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAV  211 (1253)
Q Consensus       132 ~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~  211 (1253)
                      .++|++++++|..+|++ .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+..+
T Consensus        81 ~~l~~~l~~~~~~~~~~-~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~  159 (529)
T TIGR02857        81 ERLLAAVAALGPGWLQG-RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI  159 (529)
T ss_pred             HHHHHHHHhCCchhhcc-CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999999987 69999999999999999999999889999998888889999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          212 AGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLF  291 (1253)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1253)
                      +...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......+..++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (529)
T TIGR02857       160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT  239 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888899999999999999999999999999999999999999999999888888887777777776667666


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 000851          292 CAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLP  371 (1253)
Q Consensus       292 ~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~  371 (1253)
                      +..++++.++++.+.+|.+|+|.+++++.+......|+..+...+..++++..+++|+.++++.+++.. +  .. ....
T Consensus       240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-~--~~-~~~~  315 (529)
T TIGR02857       240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-G--KA-PVTA  315 (529)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-C--Cc-CCCC
Confidence            666666667778888999999999988877777788999999999999999999999999997543211 1  11 1111


Q ss_pred             CCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHh
Q 000851          372 KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR  451 (1253)
Q Consensus       372 ~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r  451 (1253)
                      ...+.|+++||+|+|+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus       316 ~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr  395 (529)
T TIGR02857       316 APAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR  395 (529)
T ss_pred             CCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence            12357999999999986544699999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000851          452 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       452 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~  531 (1253)
                      ++|+||+|+|++|++||+|||.++.++.++++++++++.++++++++++|+||||.+||+|.+||||||||++||||+++
T Consensus       396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~  475 (529)
T TIGR02857       396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR  475 (529)
T ss_pred             hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEE
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL  585 (1253)
Q Consensus       532 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl  585 (1253)
                      +|+|+|||||||+||+++++.+.+.+.++.+++|+|+||||+++++.||+|++|
T Consensus       476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence            999999999999999999999999999998899999999999999999999985

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=5.1e-78  Score=750.11  Aligned_cols=566  Identities=28%  Similarity=0.381  Sum_probs=487.4

Q ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          669 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFY  748 (1253)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  748 (1253)
                      +++++++.+++++.+.+.++++++..+.....++.++.+++.......      ...+..+++++.+...+..++..++.
T Consensus         7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (585)
T TIGR01192         7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA   80 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666777777777777777777777778888888876543211      01111222223333344444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000851          749 TLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRL  828 (1253)
Q Consensus       749 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  828 (1253)
                      ..+..++..++|.++|++++++|++||+.  +++|++++|+++|++.++..+...+...+..++.+++.+++++.++|.+
T Consensus        81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  158 (585)
T TIGR01192        81 DRLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL  158 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666667777789999999999999974  7899999999999999999998888888888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000851          829 AAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHI  908 (1253)
Q Consensus       829 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~  908 (1253)
                      ++++++++|+++++.....+..++..++..+...+..+.+.|+++|+++||+|+.++.+.+++.+..++..+...+..+.
T Consensus       159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (585)
T TIGR01192       159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW  238 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888877777777777777788888999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000851          909 SGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTA  988 (1253)
Q Consensus       909 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~  988 (1253)
                      .++...+...+..+..++++++|++++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~  318 (585)
T TIGR01192       239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ  318 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            88877888888888888899999999999999999999988888888889999999999999999999999998875443


Q ss_pred             CCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEEC
Q 000851          989 IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 1068 (1253)
Q Consensus       989 ~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~id 1068 (1253)
                      .+.... ....++..+.|+++||+|+|++  +.++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+|
T Consensus       319 ~~~~~~-~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~  395 (585)
T TIGR01192       319 REEPAD-APELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID  395 (585)
T ss_pred             ccCCcc-CCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence            221111 0111123457999999999974  2468999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChh
Q 000851         1069 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148 (1253)
Q Consensus      1069 G~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgG 1148 (1253)
                      |.|+++++.+.+|++++||||||.+|++||+|||.++.++.++++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus       396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG  475 (585)
T TIGR01192       396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG  475 (585)
T ss_pred             CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence            99999999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhH
Q 000851         1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1149 QkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      ||||++|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++
T Consensus       476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~  555 (585)
T TIGR01192       476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE  555 (585)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             HhhcccchHHHHHHHhhc
Q 000851         1229 LLRKENGIYKQLIRLQQD 1246 (1253)
Q Consensus      1229 Ll~~~~g~y~~L~~~~~~ 1246 (1253)
                      |++ ++|.|+++++.+..
T Consensus       556 l~~-~~~~y~~l~~~~~~  572 (585)
T TIGR01192       556 LIQ-KDGRFYKLLRRSGL  572 (585)
T ss_pred             HHH-CCChHHHHHHhCcc
Confidence            998 68999999987753

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=9.8e-79  Score=752.49  Aligned_cols=522  Identities=22%  Similarity=0.277  Sum_probs=444.4

Q ss_pred             HHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          674 KLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGE  753 (1253)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  753 (1253)
                      ++.+++++.+.+..++.++........++.+..+++.......   ......+...++++.++..++.++..++....+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (529)
T TIGR02868         6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP---VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAAL   82 (529)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555556666666654432111   0000011111223445566777788888889999


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000851          754 HLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVA  833 (1253)
Q Consensus       754 ~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l  833 (1253)
                      ++..++|.++|+++++.|.+||+  ++++|++++|+++|++.++..+...+..++.+++.++++++++++++|.++++++
T Consensus        83 ~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l  160 (529)
T TIGR02868        83 RSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLA  160 (529)
T ss_pred             HHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999997  4789999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000851          834 ASLPLLIGAFV-AEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFG  912 (1253)
Q Consensus       834 ~~~pl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  912 (1253)
                      +.+|++.++.. +..+..+...++.++..++..+++.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (529)
T TIGR02868       161 AGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLG  240 (529)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88787765553 33444455566677778889999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 000851          913 YGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPD  992 (1253)
Q Consensus       913 ~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~  992 (1253)
                      ..+..++..+..++.+|+|++++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~  320 (529)
T TIGR02868       241 AAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG  320 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence            88888888888899999999999999999999998888888888888888889999999999999999998765542211


Q ss_pred             CCC-CcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCcc
Q 000851          993 DPA-SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 1071 (1253)
Q Consensus       993 ~~~-~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~d 1071 (1253)
                      ... ....++..+.|+|+||+|+|+++  +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus       321 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~  398 (529)
T TIGR02868       321 VVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS  398 (529)
T ss_pred             CCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence            111 11112234679999999999843  369999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1072 IRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1072 i~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      ++++ .+++|++|+||||||+||+|||||||.+|.|+++||++++|++.|+++++|.++|+||||++||+|.+|||||||
T Consensus       399 i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ  477 (529)
T TIGR02868       399 VSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ  477 (529)
T ss_pred             hhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence            9999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCc
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRL 1203 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl 1203 (1253)
                      ||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus       478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            9999999999999999999999999999999999999988899999999996

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=4.1e-78  Score=755.72  Aligned_cols=566  Identities=32%  Similarity=0.539  Sum_probs=492.1

Q ss_pred             HHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          673 LKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMG  752 (1253)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  752 (1253)
                      +++.++.++.+.+.+++.++.+......++.+..+++..+....   ......+..+++++.++..++.+++.++...++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (576)
T TIGR02204        10 WPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVTWLG   86 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455566666666666666666666777777765442211   111223334444445556667778888899999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000851          753 EHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVV  832 (1253)
Q Consensus       753 ~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~  832 (1253)
                      .++...+|..+++++++.|.++|+.  .++|++++|+++|++.+++++...+..++.+++.+++++++++.++|++++++
T Consensus        87 ~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (576)
T TIGR02204        87 ERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV  164 (576)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999974  67999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000851          833 AASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFG  912 (1253)
Q Consensus       833 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  912 (1253)
                      ++.+|+.++..++..+..++..++..+...+..+.+.|.++|+++||+++.++++.++|.+..++..+...+......+.
T Consensus       165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (576)
T TIGR02204       165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL  244 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99889888888878888888888888888899999999999999999999999999999999999888888888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 000851          913 YGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPD  992 (1253)
Q Consensus       913 ~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~  992 (1253)
                      ..+...+.++..++.+++|++++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~  324 (576)
T TIGR02204       245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP  324 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence            77777777777888889999999999999999998888888888999999999999999999999999998755432211


Q ss_pred             CCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccC
Q 000851          993 DPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI 1072 (1253)
Q Consensus       993 ~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di 1072 (1253)
                      ........+..+.|+|+||+|+||.+++.++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||+|+
T Consensus       325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i  404 (576)
T TIGR02204       325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL  404 (576)
T ss_pred             CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence            11111111234579999999999854346799999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000851         1073 RTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1073 ~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQr 1152 (1253)
                      ++++.+++|++|+||||||.+|+|||||||.+++|+.++++++++++.++++++++++|+|+||++|++|.+||||||||
T Consensus       405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr  484 (576)
T TIGR02204       405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR  484 (576)
T ss_pred             HhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH
Confidence            99999999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhc
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ++||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|++ 
T Consensus       485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~-  563 (576)
T TIGR02204       485 IAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA-  563 (576)
T ss_pred             HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH-
Confidence            9999999999999999999999999999999999999888999999999999999999999999999999999999998 


Q ss_pred             ccchHHHHHHHh
Q 000851         1233 ENGIYKQLIRLQ 1244 (1253)
Q Consensus      1233 ~~g~y~~L~~~~ 1244 (1253)
                      +++.|++|++.|
T Consensus       564 ~~~~~~~l~~~~  575 (576)
T TIGR02204       564 KGGLYARLARLQ  575 (576)
T ss_pred             cCChHHHHHhhc
Confidence            689999999765

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=6.5e-78  Score=748.32  Aligned_cols=514  Identities=28%  Similarity=0.419  Sum_probs=461.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHH
Q 000851          726 VALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLS  805 (1253)
Q Consensus       726 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~  805 (1253)
                      +..+++++.++..++.++..++....+.+...++|.++|++++++|++||+.  +++|++++|+++|++.++..+...+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~i~srl~~Dv~~i~~~~~~~~~  115 (569)
T PRK10789         38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR--HRTGDLMARATNDVDRVVFAAGEGVL  115 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4444555555666777788888888999999999999999999999999974  78999999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcH
Q 000851          806 IIVQNVALTVTAFVIA-FILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIE  884 (1253)
Q Consensus       806 ~~~~~~~~~~~~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e  884 (1253)
                      .++..++..+++++++ +.++|.+++++++++|+++++.....+..++..++.++...+..+.+.|+++|+++||+|+.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e  195 (569)
T PRK10789        116 TLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLE  195 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhccc
Confidence            8877766666665555 589999999999999998888877777777777788888889999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          885 KRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLA  964 (1253)
Q Consensus       885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  964 (1253)
                      +.+.++|.+..++..+...+..+..+....+.+....+..++.+++|++++..|.++.|.++++..+......++..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~  275 (569)
T PRK10789        196 DRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAW  275 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888888888877777777777888889999999999999999999999888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 000851          965 LAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSG 1044 (1253)
Q Consensus       965 ~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SG 1044 (1253)
                      .+..+..+..+.+|+.++++.+++.+...   .+.++.++.|+|+||+|+|+.. +.++|+|+||+|+|||++|||||||
T Consensus       276 ~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sG  351 (569)
T PRK10789        276 MFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTG  351 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCC
Confidence            99999999999999999987654322111   1112234679999999999843 3579999999999999999999999


Q ss_pred             CcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHH
Q 000851         1045 SGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 1124 (1253)
Q Consensus      1045 SGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~ 1124 (1253)
                      ||||||+++|+|+|+|++|+|++||.|+++++.+++|++++||||+|++|++||+|||.++.++.++++++++++.++++
T Consensus       352 sGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~  431 (569)
T PRK10789        352 SGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVH  431 (569)
T ss_pred             CCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             HHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCch
Q 000851         1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLS 1204 (1253)
Q Consensus      1125 ~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ 1204 (1253)
                      +++.++|+|+||.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++
T Consensus       432 ~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~  511 (569)
T PRK10789        432 DDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLS  511 (569)
T ss_pred             HHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             hhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHHHHhhc
Q 000851         1205 TIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQD 1246 (1253)
Q Consensus      1205 ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~~~~~ 1246 (1253)
                      ++..||+|++|++|+++|.|+|++|++ +++.|++|++.|..
T Consensus       512 ~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~~~~  552 (569)
T PRK10789        512 ALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRYQQL  552 (569)
T ss_pred             HHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHHhhh
Confidence            999999999999999999999999998 57999999987754

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=4.8e-78  Score=813.58  Aligned_cols=507  Identities=22%  Similarity=0.289  Sum_probs=440.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          100 YLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALR  179 (1253)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~  179 (1253)
                      ++++++++..++.++..+++...+.+...++|.++++++++.|++||++ .++|++++|+++|++.+++.+...+..++.
T Consensus      1010 iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~~~~ 1088 (1522)
T TIGR00957      1010 VYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKMFMG 1088 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666777777888888899999999999999999999999998 699999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 000851          180 YLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE  259 (1253)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~  259 (1253)
                      .++.++++++++++.+|.++++++.++++..++..++.+..+...+..++..+.+.+.+.|+++|+++||+|++|+.+.+
T Consensus      1089 ~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~ 1168 (1522)
T TIGR00957      1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIH 1168 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHH
Confidence            99999999999998888877766666666666666666777777777777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          260 SYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVR-HGDTNGGKAFTTIINVIFSGFALGQAAPNLAA  338 (1253)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~  338 (1253)
                      ++.+..+...+..........+......++.   .++++++|++.+. .|.+++|.+.+++.+......++..+...+..
T Consensus      1169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~ 1245 (1522)
T TIGR00957      1169 QSDLKVDENQKAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSE 1245 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888887777666554444444443333332   2334445555554 58899999988888888888899999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC--CCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCc
Q 000851          339 IAKGKAAAANIISIIKENSHSSERPGDDGITLP--KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSG  416 (1253)
Q Consensus       339 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsG  416 (1253)
                      +..+.+|.+|+.++++.+++.+ ...+....++  +.+|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus      1246 ~e~~~~s~eRi~~~~~~~~e~~-~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsG 1324 (1522)
T TIGR00957      1246 METNIVAVERLKEYSETEKEAP-WQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAG 1324 (1522)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcc-ccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCC
Confidence            9999999999999997765532 1001111111  245889999999999765446999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHH
Q 000851          417 KSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF  496 (1253)
Q Consensus       417 KSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~  496 (1253)
                      ||||+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||+||+|||||||.... +++++++++|++.++++++
T Consensus      1325 KSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~ 1403 (1522)
T TIGR00957      1325 KSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTF 1403 (1522)
T ss_pred             HHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHH
Confidence            999999999999999999999999999999999999999999999999999999998332 5789999999999999999


Q ss_pred             HhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhh
Q 000851          497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV  576 (1253)
Q Consensus       497 i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~  576 (1253)
                      +.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++
T Consensus      1404 I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti 1483 (1522)
T TIGR00957      1404 VSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTI 1483 (1522)
T ss_pred             HhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             hhcCEEEEEeCCEEEEeeCcchhhhcCchHHHHHHh
Q 000851          577 RDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL  612 (1253)
Q Consensus       577 ~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~~~  612 (1253)
                      .+||+|+||++|+|+|.|+|+||++++|.|+++++.
T Consensus      1484 ~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957      1484 MDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred             HhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence            999999999999999999999999999999999864

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.4e-78  Score=681.31  Aligned_cols=554  Identities=22%  Similarity=0.304  Sum_probs=459.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           49 CVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTA  128 (1253)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (1253)
                      +..+.++++++++..+....+..+-|++|..-.-..  ...... +...+..+=.+++...+..|......+....++..
T Consensus        15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag--~~~~f~-~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~   91 (573)
T COG4987          15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAG--LAYIFN-VMLPSAGVRGLAILRTAARYVERLVSHDATFRVLS   91 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcc--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            445667777777766666655556788776522111  000000 11111222334566677788888888889999999


Q ss_pred             HHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000851          129 RLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAV-VP  207 (1253)
Q Consensus       129 ~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~-~p  207 (1253)
                      ++|.++|+++...+..-... .++||+++|+..|++.+++.+-..+...+..+..+.+..+.+-+++|.+++.+... ..
T Consensus        92 ~lRv~~f~kl~p~sp~~~~r-~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~  170 (573)
T COG4987          92 ALRVRLFEKLEPLSPALLLR-YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLL  170 (573)
T ss_pred             HHHHHHHHhhccCChHHHHh-cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999987 69999999999999999999988888888888777777777778899988654443 33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          208 LIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTY  287 (1253)
Q Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1253)
                      +++++..++.+..++..++..+..+...+.+.|.+.|....+.||+++.+.+.+.+.-..+.+...|...+.++...+..
T Consensus       171 ~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~  250 (573)
T COG4987         171 LLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILL  250 (573)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456667777778888888888889999999999999999999999999999999988899999998888888887777


Q ss_pred             HHHHHHHH-HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 000851          288 GLLFCAWA-LLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAA-PNLAAIAKGKAAAANIISIIKENSHSSERPGD  365 (1253)
Q Consensus       288 ~~~~~~~~-~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~  365 (1253)
                      ++..+..+ .++|.+ ..+-.|..+.-.+..+++.++....++.-+. ..+....+...|+.|+.++++.+++.. . + 
T Consensus       251 l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~-~-~-  326 (573)
T COG4987         251 LIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT-F-P-  326 (573)
T ss_pred             HHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccC-C-C-
Confidence            77666655 445554 3445566653333333333233333444444 456788999999999999999887754 2 1 


Q ss_pred             CCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCC
Q 000851          366 DGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL  445 (1253)
Q Consensus       366 ~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~  445 (1253)
                      +. ..+.....++++||+|+|++.+.++|+|+||++++||++||+|+|||||||++++|.|-|+|++|+|.++|.++..+
T Consensus       327 ~~-~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l  405 (573)
T COG4987         327 DE-QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL  405 (573)
T ss_pred             cc-ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC
Confidence            11 11111127999999999998776799999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 000851          446 QLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       446 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriai  525 (1253)
                      +.+.+|+.|++++|.++||++|+|||+.+++|++++|+++++++++++++++++.|+|++|.+||.|..||||||||+||
T Consensus       406 ~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAl  485 (573)
T COG4987         406 DEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL  485 (573)
T ss_pred             ChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCch
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE  605 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~  605 (1253)
                      ||+|++|+|++||||||.+||++||+++.+.+.+..+|||+|+||||+..++.+|||+||++|+++|+|+|++|++++|.
T Consensus       486 AR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~  565 (573)
T COG4987         486 ARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGR  565 (573)
T ss_pred             HHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 000851          606 YAALVN  611 (1253)
Q Consensus       606 y~~~~~  611 (1253)
                      |+++++
T Consensus       566 ~~~l~q  571 (573)
T COG4987         566 YKRLYQ  571 (573)
T ss_pred             HHHHhc
Confidence            999875

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=2e-77  Score=741.41  Aligned_cols=533  Identities=22%  Similarity=0.295  Sum_probs=462.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           52 MFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLR  131 (1253)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR  131 (1253)
                      +++.++++++..++....|+++++++|.+.... +    ...+..+...++++.++..++.++..++..+.+.++..++|
T Consensus         8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr   82 (544)
T TIGR01842         8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-S----VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN   82 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666667777888999999764211 1    11222233334444455667788888999999999999999


Q ss_pred             HHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          132 LKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGD-KTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIA  210 (1253)
Q Consensus       132 ~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~  210 (1253)
                      .++|+|++++|+.      ..+...+++++|++.+++.+.. .+..++..++.++ .++++++++|.+++++++.+|+++
T Consensus        83 ~~~~~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~  155 (544)
T TIGR01842        83 QPIFAASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLV  155 (544)
T ss_pred             HHHHHHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999983      2355788999999999998877 4555555555444 446789999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          211 VAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLL  290 (1253)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1253)
                      ++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+....+..++.
T Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (544)
T TIGR01842       156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR  235 (544)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778888888888899999999999999999999999999999999999999999998888888888887777777777


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 000851          291 FCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITL  370 (1253)
Q Consensus       291 ~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~  370 (1253)
                      .+..++++++|++++.+|.+|+|++++++.+......|+..+...+..++++.++.+|+.++++.+++.+ +  .  ...
T Consensus       236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~-~--~--~~~  310 (544)
T TIGR01842       236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRD-P--A--MPL  310 (544)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-C--C--CCC
Confidence            7777888899999999999999999999888888888999999999999999999999999997655422 1  1  111


Q ss_pred             CCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHH
Q 000851          371 PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL  450 (1253)
Q Consensus       371 ~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~  450 (1253)
                      +...+.|+++||+|+|++.++++|+|+||+++|||+++||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++
T Consensus       311 ~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~  390 (544)
T TIGR01842       311 PEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF  390 (544)
T ss_pred             CCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence            22346799999999997644569999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000851          451 REQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL  530 (1253)
Q Consensus       451 r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~  530 (1253)
                      |++|+||+|+|++|++|++|||.++.++.++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++
T Consensus       391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall  470 (544)
T TIGR01842       391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY  470 (544)
T ss_pred             hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999888778999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhh
Q 000851          531 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       531 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ++|++||||||||+||+++++.+.+.|.++. +++|+|+||||+++++.||+|++|++|++++.|+|+|+++
T Consensus       471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence            9999999999999999999999999999885 6899999999999999999999999999999999999875

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-80  Score=679.37  Aligned_cols=491  Identities=30%  Similarity=0.420  Sum_probs=440.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000851          117 AFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFA-VGFTSV  195 (1253)
Q Consensus       117 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  195 (1253)
                      .++...++.....+--+.|.|++++++.|+-+ .++|.+...+..-.+-|+..+...+..++..++.+....+ +...++
T Consensus         4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~-r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~   82 (497)
T COG5265           4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE-RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG   82 (497)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh-cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence            45566777778888889999999999999987 5899998888888888888888777777777776655444 445679


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000851          196 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKS  275 (1253)
Q Consensus       196 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~  275 (1253)
                      |+.++++++++.+.+++......+.....+...++.+++++...+++-+..+||.|+.|+.+..+|++.++.+.+...|.
T Consensus        83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~  162 (497)
T COG5265          83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV  162 (497)
T ss_pred             cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence            99999999888888877766666666677777888999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000851          276 GVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKE  355 (1253)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~  355 (1253)
                      ....++.......+......++...++..+..|.+|+|+++..-.++.+.+.|+..+...+.++.+++.-.++.+++++.
T Consensus       163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~  242 (497)
T COG5265         163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV  242 (497)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence            77766666666666666777777888899999999999998877778888899999999999999999999999999988


Q ss_pred             cCCCCCCCCCCCCCCC-CCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcE
Q 000851          356 NSHSSERPGDDGITLP-KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK  434 (1253)
Q Consensus       356 ~~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~  434 (1253)
                      +.+..+.  ++..... ...|.+.|+||+|.|..+ .++|+|+||++++|+++|+|||||+||||++++|.|||++++|.
T Consensus       243 ~~~v~d~--pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~  319 (497)
T COG5265         243 EAEVSDA--PDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS  319 (497)
T ss_pred             chhhccC--CCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence            7765522  2222222 345789999999999754 45999999999999999999999999999999999999999999


Q ss_pred             EEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCC
Q 000851          435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ  514 (1253)
Q Consensus       435 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~  514 (1253)
                      |.+||+|+++...+++|+.||+||||..||++|+..||.||+|+++++|+..|++.++.++||+.+|+||+|.|||+|-.
T Consensus       320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk  399 (497)
T COG5265         320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK  399 (497)
T ss_pred             EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEee
Q 000851          515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG  594 (1253)
Q Consensus       515 LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g  594 (1253)
                      ||||||||+||||+++++|+||+|||+|||||.+||+.|+.+|++..+|+|+++|+|||+|+-+||.|+||++|+|+|.|
T Consensus       400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg  479 (497)
T COG5265         400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG  479 (497)
T ss_pred             ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhhcCchHHHHHH
Q 000851          595 THVDLISKGGEYAALVN  611 (1253)
Q Consensus       595 ~~~~l~~~~~~y~~~~~  611 (1253)
                      +|+||++++|.|++||.
T Consensus       480 ~h~~ll~~~g~ya~mw~  496 (497)
T COG5265         480 THEELLAAGGLYAEMWR  496 (497)
T ss_pred             cHHHHHHcCChHHHHhc
Confidence            99999999999999985

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=7.1e-77  Score=799.78  Aligned_cols=506  Identities=22%  Similarity=0.295  Sum_probs=406.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           98 ALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHA  177 (1253)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~  177 (1253)
                      .+++++++++..++.+++.+++...+.+...++|.+++++++++|++||++ .++|++++|+++|++.+++.+...+..+
T Consensus       956 ~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~~ 1034 (1622)
T PLN03130        956 NLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNMF 1034 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555566667778888888889999999999999999999999999998 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 000851          178 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAV-AGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAK  256 (1253)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~  256 (1253)
                      +..++.+++.++++++++|. .++++++++++++ +..++.+..++..+......+...+.+.|+++|+++||+|+.+++
T Consensus      1035 ~~~~~~~i~~~i~i~~~~~~-~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~ 1113 (1622)
T PLN03130       1035 LGQIFQLLSTFVLIGIVSTI-SLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 1113 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHH
Confidence            99999999888888888873 3333333333222 223334444555555556667888999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC---------CChHHHHHHHHHHHHHH
Q 000851          257 AIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLL-FCAWALLLWYAGILVRHGD---------TNGGKAFTTIINVIFSG  326 (1253)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~v~~g~---------lt~g~~~~~~~~~~~~~  326 (1253)
                      +.+++.+..+..    .+..........+..+.. .+..+++++.|.+.+..+.         .++|.+++   +.+...
T Consensus      1114 f~~~~~~~~~~~----~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~~~~ 1186 (1622)
T PLN03130       1114 MAEINGRSMDNN----IRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YALNIT 1186 (1622)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHHHHH
Confidence            666655544443    333333222222221111 1222222233334444332         23343333   333344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC--CCCCcEEEEEEEEECCCCCCcccccceEEEeCC
Q 000851          327 FALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLP--KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAG  404 (1253)
Q Consensus       327 ~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g  404 (1253)
                      .++..+...+..++.+.+|.+|+.++++.+++.+.. .++..+++  +.+|.|+|+||+|+|+++.++||+|+||+|+||
T Consensus      1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~-~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~G 1265 (1622)
T PLN03130       1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLV-IENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPS 1265 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccc-ccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCC
Confidence            455666667778899999999999999876653211 01111111  245789999999999754345999999999999


Q ss_pred             CEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHH
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRV  484 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~  484 (1253)
                      |++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||.||+|||||||.++. +++++++
T Consensus      1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei 1344 (1622)
T PLN03130       1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADL 1344 (1622)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986 5789999


Q ss_pred             HHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCC
Q 000851          485 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR  564 (1253)
Q Consensus       485 ~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~  564 (1253)
                      ++|++.+++++|+.++|+||||.+||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++
T Consensus      1345 ~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~ 1424 (1622)
T PLN03130       1345 WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1424 (1622)
T ss_pred             HHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             eEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc-CchHHHHHHhhh
Q 000851          565 TTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQS  614 (1253)
Q Consensus       565 t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~y~~~~~~~~  614 (1253)
                      |+|+||||++++.+||+|+||++|+|+|.|+|+||+++ +|.|+++++.+.
T Consensus      1425 TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130       1425 TMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred             EEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence            99999999999999999999999999999999999987 689999987643

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-78  Score=665.78  Aligned_cols=491  Identities=33%  Similarity=0.475  Sum_probs=426.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000851          746 YFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTV-TAFVIAFIL  824 (1253)
Q Consensus       746 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~-~~~~~~~~~  824 (1253)
                      .++...+....+.+-.+.|.|++++++.|+-.  ..+|-+.........-++..+...+...+..++-+. .+.+....+
T Consensus         4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~   81 (497)
T COG5265           4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY   81 (497)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence            34566777888888999999999999999864  445544433333333344444333443333333332 233445578


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHH
Q 000851          825 SWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALL  904 (1253)
Q Consensus       825 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~  904 (1253)
                      +|+.+++.++++.+++++.....-....+.+..+++.+++++...+++-+.+|+|.||.|+++..+|...++.+.+...+
T Consensus        82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k  161 (497)
T COG5265          82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK  161 (497)
T ss_pred             ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence            99999999999988888777766666677788889999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000851          905 RGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILY  984 (1253)
Q Consensus       905 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~  984 (1253)
                      .....++.......+...........+...+..+..|.|+++..-.++.....++..+...+.++.++....++.+++++
T Consensus       162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~  241 (497)
T COG5265         162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD  241 (497)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence            88777777777788888888888888888999999999999988888888888888888889999999999999998887


Q ss_pred             ccccCCCCCCCCcccc-cccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCcc
Q 000851          985 RKTAIQPDDPASKEVT-EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063 (1253)
Q Consensus       985 ~~~~~~~~~~~~~~~~-~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G 1063 (1253)
                      .+.+.. +.+..++.+ -..|.|.|+||+|.|.  |..|+|+|+||++++|+++||||+||+||||+.++|.||||+++|
T Consensus       242 ~~~~v~-d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG  318 (497)
T COG5265         242 VEAEVS-DAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG  318 (497)
T ss_pred             cchhhc-cCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence            654432 222223333 3457899999999996  467899999999999999999999999999999999999999999


Q ss_pred             EEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCC
Q 000851         1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 1143 (1253)
Q Consensus      1064 ~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~ 1143 (1253)
                      .|.+||.|++++..+.+|+.||+||||..||++|+..|+.||+|+++++|++.|++.|++++||+++|+||||.|||+|-
T Consensus       319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl  398 (497)
T COG5265         319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL  398 (497)
T ss_pred             eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEe
Q 000851         1144 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1223 (1253)
Q Consensus      1144 ~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~ 1223 (1253)
                      .||||||||+||||++|++|+||+||||||+||..||+.||.+|++..+|+|.++|||||+||.+||.|+||++|+|+|.
T Consensus       399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er  478 (497)
T COG5265         399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER  478 (497)
T ss_pred             eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhHHhhcccchHHHHHH
Q 000851         1224 GSHEQLLRKENGIYKQLIR 1242 (1253)
Q Consensus      1224 Gt~~eLl~~~~g~y~~L~~ 1242 (1253)
                      |+|+||++ .+|.|++||.
T Consensus       479 g~h~~ll~-~~g~ya~mw~  496 (497)
T COG5265         479 GTHEELLA-AGGLYAEMWR  496 (497)
T ss_pred             CcHHHHHH-cCChHHHHhc
Confidence            99999999 5999999995

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=7.8e-76  Score=726.60  Aligned_cols=527  Identities=23%  Similarity=0.329  Sum_probs=457.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          681 PYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVR  760 (1253)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr  760 (1253)
                      +.+.++++++++.+...+..++.++++++....+...  ......+..+++++.++..++.++..++....+.++..++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr   80 (529)
T TIGR02857         3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR   80 (529)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666667777777777765322111  11233445556666777788889999999999999999999


Q ss_pred             HHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000851          761 LSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLI  840 (1253)
Q Consensus       761 ~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~  840 (1253)
                      .++|+++++.|..||+  +.++|++++|+++|++.+++.+...+..++.+++..++++++++.++|.+++++++++|+..
T Consensus        81 ~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~  158 (529)
T TIGR02857        81 ERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP  158 (529)
T ss_pred             HHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            9999999999999997  48999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          841 GAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLS  920 (1253)
Q Consensus       841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  920 (1253)
                      ++.+...+..+...++.++...+..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+..+.......+.+++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (529)
T TIGR02857       159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA  238 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777888888999999999999999999999999999999999998888888887777777777777


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccc
Q 000851          921 LCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVT 1000 (1253)
Q Consensus       921 ~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~ 1000 (1253)
                      .+..++...+++..+..|.+++|.++++..+......++..+...+..+.++..+.+|+.++++.+++.... .  ....
T Consensus       239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-~--~~~~  315 (529)
T TIGR02857       239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-A--PVTA  315 (529)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-c--CCCC
Confidence            666666666666666789999999998888888888888999999999999999999999998743221111 1  1111


Q ss_pred             cccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHH
Q 000851         1001 EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 1080 (1253)
Q Consensus      1001 ~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~l 1080 (1253)
                      +..+.|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||.|+++++.+++
T Consensus       316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l  394 (529)
T TIGR02857       316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW  394 (529)
T ss_pred             CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence            123579999999999853 3479999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000851         1081 RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160 (1253)
Q Consensus      1081 R~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALl 1160 (1253)
                      |++|+||||||.+|++||||||.++.++.+|++++++++.++++++++++|+||||.+||+|.+||||||||++||||++
T Consensus       395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~  474 (529)
T TIGR02857       395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL  474 (529)
T ss_pred             HhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEE
Q 000851         1161 KNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVL 1215 (1253)
Q Consensus      1161 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl 1215 (1253)
                      ++|+|||||||||+||++||+.+++.+++..+++|+|+||||+++++.||+|+||
T Consensus       475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence            9999999999999999999999999999988899999999999999999999986

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=6.9e-78  Score=700.26  Aligned_cols=480  Identities=29%  Similarity=0.476  Sum_probs=370.9

Q ss_pred             cEEEEEEEEECCCCCC--cccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCC----CcEEEECCeeCCCCCHHH
Q 000851          376 QIEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT----SGKILLDGHDLKSLQLKW  449 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~--~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~----~G~i~~~g~~~~~~~~~~  449 (1253)
                      -++++|++..|.....  .+++||||++.+||++||||+|||||||+++.|+|+.++.    +|+|.++|.|+..++.+.
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~   84 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE   84 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence            4899999999975433  3999999999999999999999999999999999999987    899999999998888765


Q ss_pred             Hh----cccEEEeccCc-cCcc--cHHHHHhc----CCCCC---CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCC
Q 000851          450 LR----EQMGLVSQEPA-LFAT--SIANNILL----GKEDA---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL  515 (1253)
Q Consensus       450 ~r----~~i~~v~Q~~~-lf~~--ti~~ni~~----g~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L  515 (1253)
                      +|    +.|+||||+|+ .+|.  ||.+-|.=    ..+..   ..++..+..+.++       +|+....  ...+.+|
T Consensus        85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vg-------l~~~~~~--~~yPheL  155 (539)
T COG1123          85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVG-------LPDPERR--DRYPHQL  155 (539)
T ss_pred             HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcC-------CCChhhh--ccCCccc
Confidence            54    47999999985 4554  66555542    21111   1223334444443       3332222  4567899


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000851          516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE  592 (1253)
Q Consensus       516 SgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~  592 (1253)
                      |||||||+.||+||+.+|++||+||||++||+.++++|.+.|+++.  .|.++|+|||++..+.+ ||||+||++|+++|
T Consensus       156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE  235 (539)
T COG1123         156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE  235 (539)
T ss_pred             CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999986  57899999999999976 89999999999999


Q ss_pred             eeCcchhhhcCc-hHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHH
Q 000851          593 SGTHVDLISKGG-EYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWE  671 (1253)
Q Consensus       593 ~g~~~~l~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1253)
                      .|+.++++++.. .|.+..-                                                            
T Consensus       236 ~G~~~~i~~~p~hpYT~~Ll------------------------------------------------------------  255 (539)
T COG1123         236 TGPTEEILSNPQHPYTRGLL------------------------------------------------------------  255 (539)
T ss_pred             ecCHHHHHhccCCcccHHHH------------------------------------------------------------
Confidence            999999876421 1100000                                                            


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          672 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLM  751 (1253)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  751 (1253)
                                                           .+                                         
T Consensus       256 -------------------------------------~a-----------------------------------------  257 (539)
T COG1123         256 -------------------------------------AA-----------------------------------------  257 (539)
T ss_pred             -------------------------------------hh-----------------------------------------
Confidence                                                 00                                         


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000851          752 GEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAV  831 (1253)
Q Consensus       752 ~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv  831 (1253)
                                        .|  ..+..+ ..                                                 
T Consensus       258 ------------------~p--~~~~~~-~~-------------------------------------------------  267 (539)
T COG1123         258 ------------------VP--RLGDEK-II-------------------------------------------------  267 (539)
T ss_pred             ------------------CC--Cccccc-cc-------------------------------------------------
Confidence                              00  000000 00                                                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000851          832 VAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGF  911 (1253)
Q Consensus       832 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1253)
                                                                                                      
T Consensus       268 --------------------------------------------------------------------------------  267 (539)
T COG1123         268 --------------------------------------------------------------------------------  267 (539)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 000851          912 GYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQP  991 (1253)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~  991 (1253)
                                                                                               ..+...+
T Consensus       268 -------------------------------------------------------------------------~~~~~~~  274 (539)
T COG1123         268 -------------------------------------------------------------------------RLPRRGP  274 (539)
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0000000


Q ss_pred             CCCCCcccccccCcEEEEeEEEECCCCC--------CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCcc
Q 000851          992 DDPASKEVTEIKGNIELRNVSFKYPVRP--------DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063 (1253)
Q Consensus       992 ~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~--------~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G 1063 (1253)
                              .+...-++++|++.+|..+.        ...+++||||++++||++||||+||||||||.++|+|+++|++|
T Consensus       275 --------~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G  346 (539)
T COG1123         275 --------LRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSG  346 (539)
T ss_pred             --------cccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence                    00112488999999998421        24689999999999999999999999999999999999999999


Q ss_pred             EEEECCcc--CCCCCHHHHhcceEEEccCCC--cc-cccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHHhCC
Q 000851         1064 TVLIDGYD--IRTLNLRSLRRKIGLVQQEPA--LF-STTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMP 1131 (1253)
Q Consensus      1064 ~I~idG~d--i~~i~~~~lR~~i~~V~Qdp~--Lf-~gTIreNl~~g~~---~~~----d~ei~~al~~a~l~~~I~~lp 1131 (1253)
                      +|.++|.|  .+.-+...+|+++-+|+|||+  |- ..||+++|.-...   ...    .+.+.+.++.+++..-     
T Consensus       347 ~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~-----  421 (539)
T COG1123         347 SIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE-----  421 (539)
T ss_pred             eEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH-----
Confidence            99999977  332235568889999999997  33 3699999863211   111    1224444555555420     


Q ss_pred             CCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-
Q 000851         1132 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN- 1208 (1253)
Q Consensus      1132 ~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~- 1208 (1253)
                           .+......||||||||+||||||..+|++||+|||||+||+.+.+.|.+.|+++.+  |.|.|+|||+++.++. 
T Consensus       422 -----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i  496 (539)
T COG1123         422 -----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI  496 (539)
T ss_pred             -----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhh
Confidence                 23344568999999999999999999999999999999999999999999998764  7899999999999987 


Q ss_pred             cCEEEEEeCCEEEEecChhHHhhcccchHHHHHHH
Q 000851         1209 ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243 (1253)
Q Consensus      1209 ~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~~ 1243 (1253)
                      ||||+||++|+|||.|+.+++.+.+...|.+..-.
T Consensus       497 ~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~  531 (539)
T COG1123         497 ADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA  531 (539)
T ss_pred             CceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence            99999999999999999999999888888877644

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.2e-75  Score=787.15  Aligned_cols=505  Identities=21%  Similarity=0.249  Sum_probs=422.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          107 VALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFV  186 (1253)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~  186 (1253)
                      +..++.++..++....+.+...++|.++|+++++.|+.|||+ .++|++++|+++|++.+.+.+...+..++..++.+++
T Consensus      1010 ~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~ 1088 (1560)
T PTZ00243       1010 LGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICS 1088 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555666778899999999999999999998 6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 000851          187 GFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLK  266 (1253)
Q Consensus       187 ~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~  266 (1253)
                      +++++++.+|.+.++++..+.+...+...+.+..+...+......+.+.+.+.|.++|+++||+|+.|+.+.++|.+..+
T Consensus      1089 ~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d 1168 (1560)
T PTZ00243       1089 SILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLD 1168 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHH
Confidence            99999998885443333222233334445556666666666777888999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          267 EALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILV--RHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKA  344 (1253)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  344 (1253)
                      ...+...+......+......++..+..+++.+++.+.+  ..+.+++|.+..++.+......++..+...+..++++..
T Consensus      1169 ~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~ 1248 (1560)
T PTZ00243       1169 VVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMN 1248 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777766555555555555555554444444444433  345578887766666667777889999999999999999


Q ss_pred             HHHHHHHHHhccCCCCCCC-------------------------CCCCC---CCCCCCCcEEEEEEEEECCCCCCccccc
Q 000851          345 AAANIISIIKENSHSSERP-------------------------GDDGI---TLPKLAGQIEFSEVCFAYPSRPHMVFEN  396 (1253)
Q Consensus       345 a~~ri~~~l~~~~~~~~~~-------------------------~~~~~---~~~~~~~~i~~~~v~f~y~~~~~~~l~~  396 (1253)
                      +.+|++++++..++.+.+.                         ...+.   +..+..|.|+|+||+|+|+++..++|+|
T Consensus      1249 s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~ 1328 (1560)
T PTZ00243       1249 SVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRG 1328 (1560)
T ss_pred             HHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeec
Confidence            9999999997433211000                         00000   0112347899999999997644459999


Q ss_pred             ceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCC
Q 000851          397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK  476 (1253)
Q Consensus       397 i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~  476 (1253)
                      +||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||.||+|||||||..+.
T Consensus      1329 vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~ 1408 (1560)
T PTZ00243       1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL 1408 (1560)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998753


Q ss_pred             CCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCcCCCCCHHHHHHHHH
Q 000851          477 EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN-PKILLLDEATSALDAESELIVQR  555 (1253)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~-p~ililDE~ts~lD~~~~~~i~~  555 (1253)
                       +++++++++|++.+++++++.++|+||||.+||+|.+|||||||||||||||+++ |+|||||||||+||++|++.|++
T Consensus      1409 -~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~ 1487 (1560)
T PTZ00243       1409 -EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA 1487 (1560)
T ss_pred             -CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHH
Confidence             6789999999999999999999999999999999999999999999999999996 89999999999999999999999


Q ss_pred             HHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc-CchHHHHHHhh
Q 000851          556 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQ  613 (1253)
Q Consensus       556 ~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~y~~~~~~~  613 (1253)
                      .|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|+++++.+
T Consensus      1488 ~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243       1488 TVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred             HHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence            99998889999999999999999999999999999999999999985 89999998754

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.4e-75  Score=788.68  Aligned_cols=509  Identities=22%  Similarity=0.300  Sum_probs=407.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           98 ALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHA  177 (1253)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~  177 (1253)
                      ...+++++++..++.+++.++....+.+...++|.+++++++++|++||++ .++|++++|+++|++.+++.+...+..+
T Consensus       953 l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~~~ 1031 (1495)
T PLN03232        953 IVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMNMF 1031 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            344555666667778888888899999999999999999999999999998 6999999999999999999999988889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 000851          178 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGG-AYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAK  256 (1253)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~  256 (1253)
                      +..++.++++++++++++|.. +++++++++++.... ++.+..++..+......+...+.+.|+++|+++||+|+.+++
T Consensus      1032 ~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~ 1110 (1495)
T PLN03232       1032 MNQLWQLLSTFALIGTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR 1110 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHH
Confidence            988888888888887777533 332233333222222 233344445566667778889999999999999999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC----hHHHHH-HHHHHHHHHHHHH
Q 000851          257 AIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRH-GDTN----GGKAFT-TIINVIFSGFALG  330 (1253)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-g~lt----~g~~~~-~~~~~~~~~~~l~  330 (1253)
                      +.+++.+..+...+..........+...   .+..+..+++++.|.+.+.. |.+.    .+..+. ++.+......++.
T Consensus      1111 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 1187 (1495)
T PLN03232       1111 MAKINGKSMDNNIRFTLANTSSNRWLTI---RLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLS 1187 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            7776665554444333222111111111   11112222223333444442 3321    122222 2334444556778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC--CCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEE
Q 000851          331 QAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITL--PKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFA  408 (1253)
Q Consensus       331 ~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~  408 (1253)
                      .+...+..++.+.+|.+|+.++++.+++.+.. .....++  .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++|
T Consensus      1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~-~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~Gekva 1266 (1495)
T PLN03232       1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAI-IENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVG 1266 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-ccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEE
Confidence            88888999999999999999999876653311 0111111  13457899999999996443459999999999999999


Q ss_pred             EEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHH
Q 000851          409 FVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAA  488 (1253)
Q Consensus       409 ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~  488 (1253)
                      |||+||||||||+++|.|+|+|++|+|.+||+|+++++.+++|++|+||||||.||+|||||||.++. +++++++++|+
T Consensus      1267 IVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al 1345 (1495)
T PLN03232       1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEAL 1345 (1495)
T ss_pred             EECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999986 67899999999


Q ss_pred             HHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEE
Q 000851          489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIV  568 (1253)
Q Consensus       489 ~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~  568 (1253)
                      +.++++++++++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+
T Consensus      1346 ~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~ 1425 (1495)
T PLN03232       1346 ERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLV 1425 (1495)
T ss_pred             HHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             EccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcC-chHHHHHHhh
Q 000851          569 VAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG-GEYAALVNLQ  613 (1253)
Q Consensus       569 itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~-~~y~~~~~~~  613 (1253)
                      ||||++++.+||+|+||++|+|+|.|+|+||++++ +.|+++++.+
T Consensus      1426 IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232       1426 IAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred             EeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence            99999999999999999999999999999999986 5899998754

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=2.3e-74  Score=714.19  Aligned_cols=535  Identities=23%  Similarity=0.337  Sum_probs=456.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          681 PYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVR  760 (1253)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr  760 (1253)
                      +.+.+.++++++..+.....++.+..+++.......   ......+..+++++.++..++.+++.++....+.++..++|
T Consensus         6 ~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr   82 (544)
T TIGR01842         6 STFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN   82 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455444445555666666665432211   11223344455555666777888899999999999999999


Q ss_pred             HHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000851          761 LSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADR-LSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLL  839 (1253)
Q Consensus       761 ~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~  839 (1253)
                      .++|+++++.|+..       .+...+++++|++.+++.+... +..++..+.. ++.+++++.++|++++++++..|++
T Consensus        83 ~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~li~l~~~~l~  154 (544)
T TIGR01842        83 QPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWM-PIYLLVCFLLHPWIGILALGGAVVL  154 (544)
T ss_pred             HHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999842       2456889999999999988774 4444444444 4445678899999999988888887


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          840 IGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLL  919 (1253)
Q Consensus       840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  919 (1253)
                      +++.++..+..++..++.++...+..+.+.|+++|+++||+|+.++.+.++|.+..++..+...+..+..+....+..++
T Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (544)
T TIGR01842       155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF  234 (544)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766667777777777888888899999999999999999999999999999999999998888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccc
Q 000851          920 SLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEV  999 (1253)
Q Consensus       920 ~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~  999 (1253)
                      ..+..++.+++|++++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++..+.    .+.
T Consensus       235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~  310 (544)
T TIGR01842       235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPL  310 (544)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCC
Confidence            8888888899999999999999999999998888889999999999999999999999999998654432211    111


Q ss_pred             ccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH
Q 000851         1000 TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS 1079 (1253)
Q Consensus      1000 ~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~ 1079 (1253)
                      ++..+.|+++||+|+||+. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||.|+++++.+.
T Consensus       311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~  389 (544)
T TIGR01842       311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET  389 (544)
T ss_pred             CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence            2234679999999999743 357999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000851         1080 LRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 1159 (1253)
Q Consensus      1080 lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARAL 1159 (1253)
                      +|++++||||||.+|++|++|||.++.++.++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||+
T Consensus       390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal  469 (544)
T TIGR01842       390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL  469 (544)
T ss_pred             HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999987777899999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhh
Q 000851         1160 LKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1160 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      +++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||++
T Consensus       470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence            99999999999999999999999999999875 6899999999999999999999999999999999999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=6.8e-74  Score=709.55  Aligned_cols=535  Identities=17%  Similarity=0.164  Sum_probs=447.6

Q ss_pred             hHHHHHHHhhc-hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000851           35 GSFLSLFAAAD-KIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW  113 (1253)
Q Consensus        35 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (1253)
                      ..+++++++++ +++ ..++++++++++.++.....|++++.++|.....   .   ...    ..+++++.++.+++.+
T Consensus         3 ~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---~---~~~----~~~~~~~~~~~~~~~~   71 (555)
T TIGR01194         3 AAIGEILALLRSPFP-AITAFSIALGLAGGLAIIALLASINNAIHEENFL---G---QGS----LFSFGGLCLLALLFRI   71 (555)
T ss_pred             chHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---c---chH----HHHHHHHHHHHHHHHH
Confidence            34678888887 664 4456677777777777777788888887642100   0   011    1123334445567788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT  193 (1253)
Q Consensus       114 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1253)
                      +..++....+.++..++|.++|+|++++|+.||++ .++|++++|+++|++.+++++.. ++.++..++.++++++++++
T Consensus        72 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~  149 (555)
T TIGR01194        72 GADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAY  149 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999998 59999999999999999999865 77788888888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH--HHHHHHHHHHHHHHHH
Q 000851          194 SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA--KAIESYSHSLKEALKQ  271 (1253)
Q Consensus       194 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~--~~~~~~~~~~~~~~~~  271 (1253)
                      ++|.+++++++++|+.+++..++.++.++...+.++..++.++.+.|.+.|++++|+|+.++  .+.++|++..++..+.
T Consensus       150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~  229 (555)
T TIGR01194       150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL  229 (555)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999999888888888888888888899999999999999999999999999954  5678898888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          272 GKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIIS  351 (1253)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~  351 (1253)
                      ..+.........++..++..+...+.+++|++.   |.+|+|++++++.+......|+..+...+..++++.++++|+.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~  306 (555)
T TIGR01194       230 HIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLAD  306 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777666655555555555555555556666654   78999999999888888889999999999999999999999999


Q ss_pred             HHhccCCCCCC---CCCCCC---CCCCCCCcEEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHH
Q 000851          352 IIKENSHSSER---PGDDGI---TLPKLAGQIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIIS  422 (1253)
Q Consensus       352 ~l~~~~~~~~~---~~~~~~---~~~~~~~~i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~  422 (1253)
                      +++.+++.+..   +.....   ......+.|+++||+|+|++.+   +++|+|+||++++||++|||||||||||||++
T Consensus       307 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~  386 (555)
T TIGR01194       307 FGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAK  386 (555)
T ss_pred             HHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHH
Confidence            98642211100   000000   1112246799999999997531   24999999999999999999999999999999


Q ss_pred             HHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCC
Q 000851          423 MVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD  502 (1253)
Q Consensus       423 ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~  502 (1253)
                      +|+|+|+|++|+|.+||+|+++++.+++|++++||+||+++|++|+++|+   .+++++++++++++.+++++++..+|+
T Consensus       387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~  463 (555)
T TIGR01194       387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDG  463 (555)
T ss_pred             HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccc
Confidence            99999999999999999999999999999999999999999999999995   466788999999999999999999999


Q ss_pred             CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH-HH-cCCCeEEEEccCchhhhhcC
Q 000851          503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE-KI-MSNRTTIVVAHRLSTVRDVD  580 (1253)
Q Consensus       503 g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~l~~~~~~d  580 (1253)
                      ||||.     .+||||||||++||||++++|+|||||||||+||+++++.+.+.+. .+ .+++|+|+||||+++++.||
T Consensus       464 g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d  538 (555)
T TIGR01194       464 GFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELAD  538 (555)
T ss_pred             ccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCC
Confidence            99995     6899999999999999999999999999999999999999988764 34 46899999999999999999


Q ss_pred             EEEEEeCCEEEEe
Q 000851          581 TIMVLKNGQVVES  593 (1253)
Q Consensus       581 ~i~vl~~G~i~~~  593 (1253)
                      +|++|++|+++|.
T Consensus       539 ~i~~l~~G~i~~~  551 (555)
T TIGR01194       539 QIIKLAAGCIVKD  551 (555)
T ss_pred             EEEEEECCEEEEe
Confidence            9999999999874

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.8e-75  Score=724.07  Aligned_cols=497  Identities=27%  Similarity=0.409  Sum_probs=365.3

Q ss_pred             cEEEEEEEEECCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCC----------
Q 000851          376 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK----------  443 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~----------  443 (1253)
                      -|+++|++++|++.  ..++|+||||++++||++|||||||||||||+++|+|+++|++|+|.++|.++.          
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~   91 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS   91 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence            58999999999632  234999999999999999999999999999999999999999999999997552          


Q ss_pred             CCCHH---HHh-cccEEEeccC--ccCc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCcccccc
Q 000851          444 SLQLK---WLR-EQMGLVSQEP--ALFA-TSIANNILLGKE---DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVG  509 (1253)
Q Consensus       444 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~ti~~ni~~g~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g  509 (1253)
                      +.+..   .+| ++||||+|+|  .++. .||+||+.++..   ..+.    +++.++++..++       ++ .+....
T Consensus        92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~~-~~~~~~  163 (623)
T PRK10261         92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRI-------PE-AQTILS  163 (623)
T ss_pred             cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCC-------CC-hhhHHh
Confidence            12222   233 4799999998  5776 499999987521   1122    223333333332       11 012345


Q ss_pred             CCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhh-cCEEEEEe
Q 000851          510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-S-NRTTIVVAHRLSTVRD-VDTIMVLK  586 (1253)
Q Consensus       510 ~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~vl~  586 (1253)
                      ....+||||||||++|||||+.+|++|||||||++||+.+++.+.+.++++. + |+|+|+|||+++.+.. ||+|++|+
T Consensus       164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~  243 (623)
T PRK10261        164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY  243 (623)
T ss_pred             CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence            5667899999999999999999999999999999999999999999999985 3 7899999999999865 89999999


Q ss_pred             CCEEEEeeCcchhhhcCc-hHHH-HHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCC
Q 000851          587 NGQVVESGTHVDLISKGG-EYAA-LVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFA  664 (1253)
Q Consensus       587 ~G~i~~~g~~~~l~~~~~-~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1253)
                      +|+|++.|+++++..... .|.. +....                                                   
T Consensus       244 ~G~i~~~g~~~~~~~~~~~~~~~~l~~~~---------------------------------------------------  272 (623)
T PRK10261        244 QGEAVETGSVEQIFHAPQHPYTRALLAAV---------------------------------------------------  272 (623)
T ss_pred             CCeecccCCHHHhhcCCCChhhhhhhhcc---------------------------------------------------
Confidence            999999998877643210 0100 00000                                                   


Q ss_pred             CcchHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          665 PSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQ  744 (1253)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  744 (1253)
                                                                       +......                        
T Consensus       273 -------------------------------------------------~~~~~~~------------------------  279 (623)
T PRK10261        273 -------------------------------------------------PQLGAMK------------------------  279 (623)
T ss_pred             -------------------------------------------------Ccccccc------------------------
Confidence                                                             0000000                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          745 HYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFIL  824 (1253)
Q Consensus       745 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~  824 (1253)
                                          .+  ..+-. +...  ..                                          
T Consensus       280 --------------------~~--~~~~~-~~~~--~~------------------------------------------  292 (623)
T PRK10261        280 --------------------GL--DYPRR-FPLI--SL------------------------------------------  292 (623)
T ss_pred             --------------------cc--cCCcc-cccc--cc------------------------------------------
Confidence                                00  00000 0000  00                                          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHH
Q 000851          825 SWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALL  904 (1253)
Q Consensus       825 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~  904 (1253)
                                                                                                ..    
T Consensus       293 --------------------------------------------------------------------------~~----  294 (623)
T PRK10261        293 --------------------------------------------------------------------------EH----  294 (623)
T ss_pred             --------------------------------------------------------------------------cc----
Confidence                                                                                      00    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000851          905 RGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILY  984 (1253)
Q Consensus       905 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~  984 (1253)
                                                                                    +          +    ..
T Consensus       295 --------------------------------------------------------------~----------~----~~  298 (623)
T PRK10261        295 --------------------------------------------------------------P----------A----KQ  298 (623)
T ss_pred             --------------------------------------------------------------c----------c----cc
Confidence                                                                          0          0    00


Q ss_pred             ccccCCCCCCCCcccccccCcEEEEeEEEECCCCC--------CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 000851          985 RKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRP--------DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus       985 ~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~--------~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r 1056 (1253)
                      .+.......+      ....-++++||+++|+.+.        ..++|+||||+|++||++||+|+||||||||+++|+|
T Consensus       299 ~~~~~~~~~~------~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G  372 (623)
T PRK10261        299 EPPIEQDTVV------DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR  372 (623)
T ss_pred             Cccccccccc------CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            0000000000      0012499999999996321        2469999999999999999999999999999999999


Q ss_pred             cCCCCccEEEECCccCCCCCHH---HHhcceEEEccCCC--ccc-ccHHHHhccCC--CC-CCH----HHHHHHHHHhcH
Q 000851         1057 FYDPISGTVLIDGYDIRTLNLR---SLRRKIGLVQQEPA--LFS-TTIYENIKYGN--ED-ASE----IELMKATKAANA 1123 (1253)
Q Consensus      1057 ~~~p~~G~I~idG~di~~i~~~---~lR~~i~~V~Qdp~--Lf~-gTIreNl~~g~--~~-~~d----~ei~~al~~a~l 1123 (1253)
                      +++|++|+|.++|.++...+..   .+|++|+||||+|.  +++ .|+.+|+.++.  .. ...    +++.+.++..++
T Consensus       373 l~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL  452 (623)
T PRK10261        373 LVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL  452 (623)
T ss_pred             CCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Confidence            9999999999999999877643   46789999999983  665 59999997531  01 111    234445555554


Q ss_pred             H-HHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEc
Q 000851         1124 H-GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVA 1200 (1253)
Q Consensus      1124 ~-~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~Ia 1200 (1253)
                      . +..           .....+||||||||++|||||+.+|+|||||||||+||+.+.+.|.+.|++..+  +.|+|+||
T Consensus       453 ~~~~~-----------~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~is  521 (623)
T PRK10261        453 LPEHA-----------WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFIS  521 (623)
T ss_pred             CHHHh-----------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            2 222           233457999999999999999999999999999999999999999999998753  78999999


Q ss_pred             cCchhhhc-cCEEEEEeCCEEEEecChhHHhhcccchHHH-HHH
Q 000851         1201 HRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ-LIR 1242 (1253)
Q Consensus      1201 Hrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~-L~~ 1242 (1253)
                      |+++.+.. ||+|+||++|+|+|.|++++++..+...|.+ ++.
T Consensus       522 Hdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~  565 (623)
T PRK10261        522 HDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA  565 (623)
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence            99999976 9999999999999999999998755556654 443

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.5e-75  Score=711.13  Aligned_cols=462  Identities=22%  Similarity=0.408  Sum_probs=357.5

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC--CCcEEEECCeeCCCCCHHH-Hhc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TSGKILLDGHDLKSLQLKW-LRE  452 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~r~  452 (1253)
                      -|+++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|  ++|+|.++|.++...+... .|+
T Consensus         5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (506)
T PRK13549          5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA   82 (506)
T ss_pred             eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence            4899999999974  3499999999999999999999999999999999999996  8999999999998766543 467


Q ss_pred             ccEEEeccCccCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          453 QMGLVSQEPALFAT-SIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       453 ~i~~v~Q~~~lf~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      .+|||+|++.+|.. |++||+.++...     .+.++..+     .+.+.++.+  |++........+||||||||++||
T Consensus        83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la  155 (506)
T PRK13549         83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA  155 (506)
T ss_pred             CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence            89999999988865 999999987431     12222111     122333333  444444556678999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcCc
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGG  604 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~  604 (1253)
                      |||+.+|++||||||||+||+.+...+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...  
T Consensus       156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--  233 (506)
T PRK13549        156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED--  233 (506)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH--
Confidence            99999999999999999999999999999999874 47899999999999875 899999999999988764332100  


Q ss_pred             hHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhHHHH
Q 000851          605 EYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAV  684 (1253)
Q Consensus       605 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1253)
                         +..                                                                          
T Consensus       234 ---~~~--------------------------------------------------------------------------  236 (506)
T PRK13549        234 ---DII--------------------------------------------------------------------------  236 (506)
T ss_pred             ---HHH--------------------------------------------------------------------------
Confidence               000                                                                          


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          685 LGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMF  764 (1253)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~  764 (1253)
                                              ..                                                      
T Consensus       237 ------------------------~~------------------------------------------------------  238 (506)
T PRK13549        237 ------------------------TM------------------------------------------------------  238 (506)
T ss_pred             ------------------------HH------------------------------------------------------
Confidence                                    00                                                      


Q ss_pred             HHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000851          765 SAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFV  844 (1253)
Q Consensus       765 ~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~  844 (1253)
                        .       +..+   .                                                              
T Consensus       239 --~-------~~~~---~--------------------------------------------------------------  244 (506)
T PRK13549        239 --M-------VGRE---L--------------------------------------------------------------  244 (506)
T ss_pred             --h-------hCcC---c--------------------------------------------------------------
Confidence              0       0000   0                                                              


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          845 AEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSY  924 (1253)
Q Consensus       845 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  924 (1253)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (506)
T PRK13549        245 --------------------------------------------------------------------------------  244 (506)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccC
Q 000851          925 ALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKG 1004 (1253)
Q Consensus       925 ~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 1004 (1253)
                                                                          .+      ..+.....        ..+.
T Consensus       245 ----------------------------------------------------~~------~~~~~~~~--------~~~~  258 (506)
T PRK13549        245 ----------------------------------------------------TA------LYPREPHT--------IGEV  258 (506)
T ss_pred             ----------------------------------------------------cc------cccccccC--------CCCc
Confidence                                                                00      00000000        0012


Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCccEEEECCccCCCCCH-HHHhc
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-PISGTVLIDGYDIRTLNL-RSLRR 1082 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-p~~G~I~idG~di~~i~~-~~lR~ 1082 (1253)
                      .|+++||+++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~  338 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ  338 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence            4899999999953223469999999999999999999999999999999999999 599999999999875543 45678


Q ss_pred             ceEEEccCC---Cccc-ccHHHHhccCCC-C------CCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChhHH
Q 000851         1083 KIGLVQQEP---ALFS-TTIYENIKYGNE-D------ASEIELMKATKAANAHGFISRMPEGYQS-HVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1083 ~i~~V~Qdp---~Lf~-gTIreNl~~g~~-~------~~d~ei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSgGQk 1150 (1253)
                      +++||||+|   .+|+ .|+.||+.++.. .      .+.++     ....+.++++.+  |++. ........||||||
T Consensus       339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k  411 (506)
T PRK13549        339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ  411 (506)
T ss_pred             CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence            899999997   3554 699999986421 0      01111     111233444444  3321 23444567999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      ||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +|+|||+|||+++.+.. ||++++|++|+++..|++++
T Consensus       412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~  491 (506)
T PRK13549        412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN  491 (506)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence            99999999999999999999999999999999999999864 48999999999999866 99999999999999999887


Q ss_pred             Hh
Q 000851         1229 LL 1230 (1253)
Q Consensus      1229 Ll 1230 (1253)
                      +.
T Consensus       492 ~~  493 (506)
T PRK13549        492 LT  493 (506)
T ss_pred             CC
Confidence            64

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=4.6e-74  Score=708.47  Aligned_cols=464  Identities=27%  Similarity=0.453  Sum_probs=355.8

Q ss_pred             cEEEEEEEEECCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCCCCHH
Q 000851          376 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~  448 (1253)
                      -|+++|++++|++.  ...+|+|+||++++||++||+||||||||||+++|+|+++|     ++|+|.++|.++...+..
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   84 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ   84 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence            48999999999632  23599999999999999999999999999999999999987     799999999999876643


Q ss_pred             H---Hh-cccEEEeccCc--cCc-ccHHHHHhcCC---CCCC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCC
Q 000851          449 W---LR-EQMGLVSQEPA--LFA-TSIANNILLGK---EDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ  514 (1253)
Q Consensus       449 ~---~r-~~i~~v~Q~~~--lf~-~ti~~ni~~g~---~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~  514 (1253)
                      .   +| ++||||+|++.  ++. .|+++|+.++.   ...+    .+++.++++..++.+..        ........+
T Consensus        85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~  156 (529)
T PRK15134         85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ  156 (529)
T ss_pred             HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence            2   33 57999999985  444 48999986421   0111    12344444444432210        112345568


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 000851          515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV  591 (1253)
Q Consensus       515 LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~  591 (1253)
                      ||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.  .++|+|+|||+++.+.. ||+|++|++|+++
T Consensus       157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~  236 (529)
T PRK15134        157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV  236 (529)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999875  37899999999999875 8999999999999


Q ss_pred             EeeCcchhhhcCchHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHH
Q 000851          592 ESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWE  671 (1253)
Q Consensus       592 ~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1253)
                      +.|+.+++.....                                                              .... 
T Consensus       237 ~~g~~~~~~~~~~--------------------------------------------------------------~~~~-  253 (529)
T PRK15134        237 EQNRAATLFSAPT--------------------------------------------------------------HPYT-  253 (529)
T ss_pred             EeCCHHHHhhCCC--------------------------------------------------------------CHHH-
Confidence            9887655432100                                                              0000 


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          672 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLM  751 (1253)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  751 (1253)
                                                                   .                                  
T Consensus       254 ---------------------------------------------~----------------------------------  254 (529)
T PRK15134        254 ---------------------------------------------Q----------------------------------  254 (529)
T ss_pred             ---------------------------------------------H----------------------------------
Confidence                                                         0                                  


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000851          752 GEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAV  831 (1253)
Q Consensus       752 ~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv  831 (1253)
                                    .+...+      .                                                     
T Consensus       255 --------------~~~~~~------~-----------------------------------------------------  261 (529)
T PRK15134        255 --------------KLLNSE------P-----------------------------------------------------  261 (529)
T ss_pred             --------------HHHHhC------c-----------------------------------------------------
Confidence                          000000      0                                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000851          832 VAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGF  911 (1253)
Q Consensus       832 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1253)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (529)
T PRK15134        262 --------------------------------------------------------------------------------  261 (529)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 000851          912 GYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQP  991 (1253)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~  991 (1253)
                                                                                              ...+. ..
T Consensus       262 ------------------------------------------------------------------------~~~~~-~~  268 (529)
T PRK15134        262 ------------------------------------------------------------------------SGDPV-PL  268 (529)
T ss_pred             ------------------------------------------------------------------------ccccc-cc
Confidence                                                                                    00000 00


Q ss_pred             CCCCCcccccccCcEEEEeEEEECCCC--------CCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCcc
Q 000851          992 DDPASKEVTEIKGNIELRNVSFKYPVR--------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063 (1253)
Q Consensus       992 ~~~~~~~~~~~~g~I~~~~Vsf~Y~~~--------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G 1063 (1253)
                      . ..      .+.-|+++||+++|+..        .+.++|+|+||+|++||++||+||||||||||+++|+|++ |++|
T Consensus       269 ~-~~------~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G  340 (529)
T PRK15134        269 P-EP------ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQG  340 (529)
T ss_pred             C-CC------CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCc
Confidence            0 00      01148999999999621        1246999999999999999999999999999999999999 4899


Q ss_pred             EEEECCccCCCCCHHH---HhcceEEEccCCC--ccc-ccHHHHhccCCC----CCC----HHHHHHHHHHhcHHHHHHh
Q 000851         1064 TVLIDGYDIRTLNLRS---LRRKIGLVQQEPA--LFS-TTIYENIKYGNE----DAS----EIELMKATKAANAHGFISR 1129 (1253)
Q Consensus      1064 ~I~idG~di~~i~~~~---lR~~i~~V~Qdp~--Lf~-gTIreNl~~g~~----~~~----d~ei~~al~~a~l~~~I~~ 1129 (1253)
                      +|++||.++...+...   +|++++||||++.  +|+ .|++||+.++..    ..+    ++.+.++++..++.+    
T Consensus       341 ~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----  416 (529)
T PRK15134        341 EIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----  416 (529)
T ss_pred             EEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----
Confidence            9999999998776543   5788999999983  665 599999986421    011    122334444444321    


Q ss_pred             CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhh
Q 000851         1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR 1207 (1253)
Q Consensus      1130 lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~ 1207 (1253)
                            ........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+  ++|||+|||+++.+.
T Consensus       417 ------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~  490 (529)
T PRK15134        417 ------ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVR  490 (529)
T ss_pred             ------HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence                  122334467999999999999999999999999999999999999999999998753  789999999999987


Q ss_pred             c-cCEEEEEeCCEEEEecChhHHhhcc
Q 000851         1208 N-ADKIAVLQQGKVAEIGSHEQLLRKE 1233 (1253)
Q Consensus      1208 ~-~D~I~Vl~~G~ive~Gt~~eLl~~~ 1233 (1253)
                      . ||+|++|++|++++.|+++++++.+
T Consensus       491 ~~~d~i~~l~~G~i~~~~~~~~~~~~~  517 (529)
T PRK15134        491 ALCHQVIVLRQGEVVEQGDCERVFAAP  517 (529)
T ss_pred             HhcCeEEEEECCEEEEEcCHHHHhcCC
Confidence            5 9999999999999999999998643

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-73  Score=702.05  Aligned_cols=459  Identities=21%  Similarity=0.385  Sum_probs=351.7

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH-Hhccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i  454 (1253)
                      -|+++|++++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++|
T Consensus         5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i   82 (510)
T PRK09700          5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI   82 (510)
T ss_pred             eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence            48999999999743  4999999999999999999999999999999999999999999999999998776554 34679


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCCC---------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          455 GLVSQEPALFAT-SIANNILLGKEDA---------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      +||+|++.++.. |++||+.++....         ..++..+     .+.+.++.+  |+.........+||||||||++
T Consensus        83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~  155 (510)
T PRK09700         83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQMLE  155 (510)
T ss_pred             EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence            999999988875 9999998764210         1111111     112233333  3433345556789999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+++++...
T Consensus       156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  235 (510)
T PRK09700        156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND  235 (510)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHH
Confidence            9999999999999999999999999999999999875 47899999999999875 899999999999988765543210


Q ss_pred             CchHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhHH
Q 000851          603 GGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPY  682 (1253)
Q Consensus       603 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (1253)
                           ++..                                                                       
T Consensus       236 -----~~~~-----------------------------------------------------------------------  239 (510)
T PRK09700        236 -----DIVR-----------------------------------------------------------------------  239 (510)
T ss_pred             -----HHHH-----------------------------------------------------------------------
Confidence                 0000                                                                       


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          683 AVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLS  762 (1253)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~  762 (1253)
                                                 .                                                    
T Consensus       240 ---------------------------~----------------------------------------------------  240 (510)
T PRK09700        240 ---------------------------L----------------------------------------------------  240 (510)
T ss_pred             ---------------------------H----------------------------------------------------
Confidence                                       0                                                    


Q ss_pred             HHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000851          763 MFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGA  842 (1253)
Q Consensus       763 ~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~  842 (1253)
                          +       +.....                                                              
T Consensus       241 ----~-------~~~~~~--------------------------------------------------------------  247 (510)
T PRK09700        241 ----M-------VGRELQ--------------------------------------------------------------  247 (510)
T ss_pred             ----h-------cCCCcc--------------------------------------------------------------
Confidence                0       000000                                                              


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          843 FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLC  922 (1253)
Q Consensus       843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  922 (1253)
                                                                                                      
T Consensus       248 --------------------------------------------------------------------------------  247 (510)
T PRK09700        248 --------------------------------------------------------------------------------  247 (510)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccc
Q 000851          923 SYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEI 1002 (1253)
Q Consensus       923 ~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1253)
                                                                            .+   .....+.  +..+.      .
T Consensus       248 ------------------------------------------------------~~---~~~~~~~--~~~~~------~  262 (510)
T PRK09700        248 ------------------------------------------------------NR---FNAMKEN--VSNLA------H  262 (510)
T ss_pred             ------------------------------------------------------cc---ccccccc--cccCC------C
Confidence                                                                  00   0000000  00000      0


Q ss_pred             cCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCH-HHHh
Q 000851         1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL-RSLR 1081 (1253)
Q Consensus      1003 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~-~~lR 1081 (1253)
                      +..|+++|+++.|.     .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus       263 ~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~  337 (510)
T PRK09700        263 ETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVK  337 (510)
T ss_pred             CcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHH
Confidence            12499999998762     28999999999999999999999999999999999999999999999999876554 4567


Q ss_pred             cceEEEccCC---Cccc-ccHHHHhccCCCC-----------CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCC
Q 000851         1082 RKIGLVQQEP---ALFS-TTIYENIKYGNED-----------ASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQL 1145 (1253)
Q Consensus      1082 ~~i~~V~Qdp---~Lf~-gTIreNl~~g~~~-----------~~d~ei~~al~~a~l~~~I~~lp~gld-t~vge~G~~L 1145 (1253)
                      ++++||||++   .+|+ -|++||+.++...           ....+.     ...+.+.++.+  |+. .........|
T Consensus       338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~L  410 (510)
T PRK09700        338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITEL  410 (510)
T ss_pred             CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccC
Confidence            8999999984   5675 5999999875210           011110     11123333333  232 1233444579


Q ss_pred             ChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 000851         1146 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1223 (1253)
Q Consensus      1146 SgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~ 1223 (1253)
                      |||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus       411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~  490 (510)
T PRK09700        411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI  490 (510)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999999864 58899999999998865 999999999999998


Q ss_pred             cChhH
Q 000851         1224 GSHEQ 1228 (1253)
Q Consensus      1224 Gt~~e 1228 (1253)
                      +++.+
T Consensus       491 ~~~~~  495 (510)
T PRK09700        491 LTNRD  495 (510)
T ss_pred             ecCcc
Confidence            87633

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.2e-73  Score=701.61  Aligned_cols=453  Identities=26%  Similarity=0.483  Sum_probs=345.9

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccC--CCCCcEEEEC----------------
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY--EPTSGKILLD----------------  438 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~----------------  438 (1253)
                      |+++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+.  +|++|+|.++                
T Consensus         1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~   78 (520)
T TIGR03269         1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV   78 (520)
T ss_pred             CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence            578999999964  34999999999999999999999999999999999996  7999999997                


Q ss_pred             -------CeeCC-------CCC---HHHHhcccEEEecc-CccCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhCc
Q 000851          439 -------GHDLK-------SLQ---LKWLREQMGLVSQE-PALFAT-SIANNILLGKED--ASM----DRVIEAAKAANA  493 (1253)
Q Consensus       439 -------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~  493 (1253)
                             |.++.       ..+   ...+|+.++||+|+ +.+|+. |++||+.++...  ...    +++.++++..+ 
T Consensus        79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-  157 (520)
T TIGR03269        79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ-  157 (520)
T ss_pred             ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-
Confidence                   33331       111   13457789999998 577764 999999875321  121    22333344443 


Q ss_pred             HHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEcc
Q 000851          494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAH  571 (1253)
Q Consensus       494 ~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH  571 (1253)
                                ++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.  .|+|+|+|||
T Consensus       158 ----------l~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH  227 (520)
T TIGR03269       158 ----------LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH  227 (520)
T ss_pred             ----------ChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence                      3333344567899999999999999999999999999999999999999999999884  3789999999


Q ss_pred             Cchhhhh-cCEEEEEeCCEEEEeeCcchhhhcCchHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhh
Q 000851          572 RLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFES  650 (1253)
Q Consensus       572 ~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (1253)
                      +++.+.. ||+|++|++|+++..|+++++...   |                                            
T Consensus       228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~---~--------------------------------------------  260 (520)
T TIGR03269       228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV---F--------------------------------------------  260 (520)
T ss_pred             CHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH---H--------------------------------------------
Confidence            9999865 899999999999876654322100   0                                            


Q ss_pred             hhhhhhccccCCCCCcchHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHH
Q 000851          651 SKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIF  730 (1253)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  730 (1253)
                                                                                                      
T Consensus       261 --------------------------------------------------------------------------------  260 (520)
T TIGR03269       261 --------------------------------------------------------------------------------  260 (520)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000851          731 VGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQN  810 (1253)
Q Consensus       731 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~  810 (1253)
                                                                  ...                                 
T Consensus       261 --------------------------------------------~~~---------------------------------  263 (520)
T TIGR03269       261 --------------------------------------------MEG---------------------------------  263 (520)
T ss_pred             --------------------------------------------Hhh---------------------------------
Confidence                                                        000                                 


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHH
Q 000851          811 VALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQ  890 (1253)
Q Consensus       811 ~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~  890 (1253)
                                     +                        .                                       
T Consensus       264 ---------------~------------------------~---------------------------------------  265 (520)
T TIGR03269       264 ---------------V------------------------S---------------------------------------  265 (520)
T ss_pred             ---------------c------------------------h---------------------------------------
Confidence                           0                        0                                       


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          891 FASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIV  970 (1253)
Q Consensus       891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  970 (1253)
                                                                                                   .. 
T Consensus       266 -----------------------------------------------------------------------------~~-  267 (520)
T TIGR03269       266 -----------------------------------------------------------------------------EV-  267 (520)
T ss_pred             -----------------------------------------------------------------------------hh-
Confidence                                                                                         00 


Q ss_pred             HHHHHHHHHHHHhcccccCCCCCCCCcccccccCcEEEEeEEEECCC--CCCcccccceeEEEeCCcEEEEEcCCCCcHH
Q 000851          971 KGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPV--RPDITIFENLNLKVSAGRSLAVVGQSGSGKS 1048 (1253)
Q Consensus       971 ~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~--~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKS 1048 (1253)
                                   ....   + .+.      ....|+++||+++|+.  +...++|+|+||+|++||++||+||||||||
T Consensus       268 -------------~~~~---~-~~~------~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKS  324 (520)
T TIGR03269       268 -------------EKEC---E-VEV------GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKT  324 (520)
T ss_pred             -------------cccc---c-cCC------CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHH
Confidence                         0000   0 000      0124999999999963  1224699999999999999999999999999


Q ss_pred             HHHHHHhccCCCCccEEEEC-Ccc---CCCCC---HHHHhcceEEEccCCCccc-ccHHHHhccCCC-CCC----HHHHH
Q 000851         1049 TVISLVMRFYDPISGTVLID-GYD---IRTLN---LRSLRRKIGLVQQEPALFS-TTIYENIKYGNE-DAS----EIELM 1115 (1253)
Q Consensus      1049 TL~~lL~r~~~p~~G~I~id-G~d---i~~i~---~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~-~~~----d~ei~ 1115 (1253)
                      ||+++|+|+++|++|+|.++ |.+   +...+   ...+|++++||||++.+|+ .|++||+.++.. ...    ++++.
T Consensus       325 TLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~  404 (520)
T TIGR03269       325 TLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAV  404 (520)
T ss_pred             HHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence            99999999999999999996 643   33333   2346778999999998887 599999975311 111    12233


Q ss_pred             HHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-C-C
Q 000851         1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-G 1193 (1253)
Q Consensus      1116 ~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~ 1193 (1253)
                      ++++..++.+.      ..+........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. + +
T Consensus       405 ~~l~~~~l~~~------~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g  478 (520)
T TIGR03269       405 ITLKMVGFDEE------KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME  478 (520)
T ss_pred             HHHHhCCCCCc------cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence            34444433210      00001234456799999999999999999999999999999999999999999999874 3 7


Q ss_pred             ceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1194 RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1194 ~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      .|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       479 ~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  517 (520)
T TIGR03269       479 QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE  517 (520)
T ss_pred             cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            899999999999876 99999999999999999998865

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.9e-70  Score=737.32  Aligned_cols=503  Identities=18%  Similarity=0.223  Sum_probs=412.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          107 VALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFV  186 (1253)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~  186 (1253)
                      +..++.+++.+++.+.+.+...++|.++++++++.|+.||++ .++|++++|+++|++.+.+.+...+..++..++.+++
T Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271       937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677778888899999999999999999999999998 6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 000851          187 GFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLK  266 (1253)
Q Consensus       187 ~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~  266 (1253)
                      .++++++++|.+.++++..+.+++++..++.+..+...+......+.+.+.+.|+++|+.+||+|++++.+.++|.+..+
T Consensus      1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271      1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999998766444433333444455555556666666777788899999999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          267 EALKQGKKSGVAKGIGVGLTYGLLFCAW--ALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKA  344 (1253)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  344 (1253)
                      ...+..........+......++..+..  +++++++..     ..+.|.+..++.+.+....++..+...+..+..+..
T Consensus      1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~ 1170 (1490)
T TIGR01271      1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMR 1170 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6544433332222222222222221111  112222322     234444444444455555677778888889999999


Q ss_pred             HHHHHHHHHhccCCCCCCCCCC-------------CCCCC--CCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEE
Q 000851          345 AAANIISIIKENSHSSERPGDD-------------GITLP--KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAF  409 (1253)
Q Consensus       345 a~~ri~~~l~~~~~~~~~~~~~-------------~~~~~--~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~i  409 (1253)
                      |.+|+.++++.+++........             ...++  +..|.|+|+||+|+|+...+++|+|+||+|+|||++||
T Consensus      1171 s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaI 1250 (1490)
T TIGR01271      1171 SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGL 1250 (1490)
T ss_pred             HHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEE
Confidence            9999999997765532110000             00011  23578999999999975445699999999999999999


Q ss_pred             EcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHH
Q 000851          410 VGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAK  489 (1253)
Q Consensus       410 vG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~  489 (1253)
                      ||+||||||||+++|+|+|+ ++|+|++||+|+++++.+.+|++|+||||||.||+||||+||.... ..+++++++|++
T Consensus      1251 vGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~ 1328 (1490)
T TIGR01271      1251 LGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAE 1328 (1490)
T ss_pred             ECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHH
Confidence            99999999999999999997 8999999999999999999999999999999999999999997653 568999999999


Q ss_pred             HhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Q 000851          490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVV  569 (1253)
Q Consensus       490 ~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i  569 (1253)
                      .+++++++.++|+|+||.+||+|.+||||||||++|||||+++|+|||||||||+||++|++.|++.|++..+++|+|+|
T Consensus      1329 ~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~I 1408 (1490)
T TIGR01271      1329 EVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408 (1490)
T ss_pred             HCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             ccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCchHHHHHHhhhccc
Q 000851          570 AHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEH  617 (1253)
Q Consensus       570 tH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~~~~~~~~  617 (1253)
                      |||++++..+|+|+||++|+|+|.|+|++|+++++.|+++++.+....
T Consensus      1409 aHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~~~ 1456 (1490)
T TIGR01271      1409 EHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLK 1456 (1490)
T ss_pred             ecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhChhc
Confidence            999999999999999999999999999999998999999987665443

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=7.6e-73  Score=693.05  Aligned_cols=454  Identities=23%  Similarity=0.391  Sum_probs=351.6

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH-Hhccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i  454 (1253)
                      -|+++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus         4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   81 (501)
T PRK10762          4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI   81 (501)
T ss_pred             eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence            3899999999974  34999999999999999999999999999999999999999999999999987655443 45689


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          455 GLVSQEPALFAT-SIANNILLGKED------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      +||+|++.++.. |++||+.++...      .+.++..+     .+.+.++.+  |+.........+||||||||++|||
T Consensus        82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~  154 (501)
T PRK10762         82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK  154 (501)
T ss_pred             EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence            999999988865 999999986431      11121111     112233333  3433344556789999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcCch
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGE  605 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~  605 (1253)
                      ||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...   
T Consensus       155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~---  231 (501)
T PRK10762        155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED---  231 (501)
T ss_pred             HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH---
Confidence            9999999999999999999999999999999874 47899999999999865 899999999999987754332100   


Q ss_pred             HHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhHHHHH
Q 000851          606 YAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVL  685 (1253)
Q Consensus       606 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1253)
                        .+.                                                                           
T Consensus       232 --~~~---------------------------------------------------------------------------  234 (501)
T PRK10762        232 --SLI---------------------------------------------------------------------------  234 (501)
T ss_pred             --HHH---------------------------------------------------------------------------
Confidence              000                                                                           


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          686 GSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFS  765 (1253)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~  765 (1253)
                                             ...                                                      
T Consensus       235 -----------------------~~~------------------------------------------------------  237 (501)
T PRK10762        235 -----------------------EMM------------------------------------------------------  237 (501)
T ss_pred             -----------------------HHh------------------------------------------------------
Confidence                                   000                                                      


Q ss_pred             HHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000851          766 AILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVA  845 (1253)
Q Consensus       766 ~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~  845 (1253)
                               +...   .                                                               
T Consensus       238 ---------~~~~---~---------------------------------------------------------------  242 (501)
T PRK10762        238 ---------VGRK---L---------------------------------------------------------------  242 (501)
T ss_pred             ---------cCCC---c---------------------------------------------------------------
Confidence                     0000   0                                                               


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          846 EQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYA  925 (1253)
Q Consensus       846 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  925 (1253)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (501)
T PRK10762        243 --------------------------------------------------------------------------------  242 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccCc
Q 000851          926 LGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGN 1005 (1253)
Q Consensus       926 ~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 1005 (1253)
                                                                         .      ...+.. +. +      +.+..
T Consensus       243 ---------------------------------------------------~------~~~~~~-~~-~------~~~~~  257 (501)
T PRK10762        243 ---------------------------------------------------E------DQYPRL-DK-A------PGEVR  257 (501)
T ss_pred             ---------------------------------------------------c------cccccc-cc-C------CCCcE
Confidence                                                               0      000000 00 0      00114


Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCH-HHHhcce
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL-RSLRRKI 1084 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~-~~lR~~i 1084 (1253)
                      |+++|+++        ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. +.+|+++
T Consensus       258 l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i  329 (501)
T PRK10762        258 LKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI  329 (501)
T ss_pred             EEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence            88999984        26999999999999999999999999999999999999999999999999987665 3567889


Q ss_pred             EEEccCC---Ccc-cccHHHHhccCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChhHHH
Q 000851         1085 GLVQQEP---ALF-STTIYENIKYGNED--------ASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1085 ~~V~Qdp---~Lf-~gTIreNl~~g~~~--------~~d~ei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSgGQkQ 1151 (1253)
                      +||||+|   .+| ..|++||+.++...        .+..+.     ...+.++++.+  |+. .........|||||||
T Consensus       330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekq  402 (501)
T PRK10762        330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQ  402 (501)
T ss_pred             EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHHH
Confidence            9999997   354 46999999864210        111111     11223344443  332 2344555679999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      |++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence            9999999999999999999999999999999999999975 48899999999999866 999999999999999998776


Q ss_pred             h
Q 000851         1230 L 1230 (1253)
Q Consensus      1230 l 1230 (1253)
                      .
T Consensus       483 ~  483 (501)
T PRK10762        483 T  483 (501)
T ss_pred             C
Confidence            4

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1.4e-70  Score=679.96  Aligned_cols=534  Identities=19%  Similarity=0.188  Sum_probs=436.9

Q ss_pred             hHHHHHHHhh-chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          668 SIWELLKLNA-AEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHY  746 (1253)
Q Consensus       668 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  746 (1253)
                      .+++++++.+ +.++.++++++++++.++.....+..+..++...... .    .   .....++++.++..++.++..+
T Consensus         4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~----~---~~~~~~~~~~~~~~~~~~~~~~   75 (555)
T TIGR01194         4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL-G----Q---GSLFSFGGLCLLALLFRIGADI   75 (555)
T ss_pred             hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c----c---hHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666667 7788777777777776666555555555544321000 0    0   0112233445556677888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000851          747 FYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW  826 (1253)
Q Consensus       747 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  826 (1253)
                      +...++.++..++|.++|++++++|++||++  +++|++++|+++|++.++.++.. +..++.+++.++++++++++++|
T Consensus        76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  152 (555)
T TIGR01194        76 FPAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV  152 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999975  78999999999999999998864 77788888888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHH--HHHHHHHHHHhHHHHHHHH
Q 000851          827 RLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEK--RISIQFASELSQPNKQALL  904 (1253)
Q Consensus       827 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~--~~~~~~~~~~~~~~~~~~~  904 (1253)
                      .+++++++.+|+.++...+..+..++...+.++..++..+.+.|.+.|++++|+|+.++  ...+++.+..++..+...+
T Consensus       153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (555)
T TIGR01194       153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII  232 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999998888887777766666666677777888899999999999999999999954  5577788888877777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000851          905 RGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILY  984 (1253)
Q Consensus       905 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~  984 (1253)
                      ..........+...+..+...+.+|++...   +.++.|.++++..+......++..+...+..+..+..+.+|+.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~  309 (555)
T TIGR01194       233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE  309 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            655555444555555555555555555543   78899999999999889999999999999999999999999999875


Q ss_pred             ccccCCC--CCCC-C-c---ccccccCcEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 000851          985 RKTAIQP--DDPA-S-K---EVTEIKGNIELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 1055 (1253)
Q Consensus       985 ~~~~~~~--~~~~-~-~---~~~~~~g~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~ 1055 (1253)
                      ...+.++  +.+. . .   ++....+.|+|+||+|+|++.+  ..++|+|+||+|++||++|||||||||||||+++|+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~  389 (555)
T TIGR01194       310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC  389 (555)
T ss_pred             hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            3211111  0010 0 0   1112246799999999998532  236999999999999999999999999999999999


Q ss_pred             ccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 000851         1056 RFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135 (1253)
Q Consensus      1056 r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gld 1135 (1253)
                      |+|+|++|+|.+||.|+++++.+++|+++++|+|||++|++|+++|+   .++.++++++++++.++++++++++|+|||
T Consensus       390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~  466 (555)
T TIGR01194       390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS  466 (555)
T ss_pred             CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence            99999999999999999999999999999999999999999999996   356789999999999999999999999999


Q ss_pred             ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHH-H-cCCceEEEEccCchhhhccCEEE
Q 000851         1136 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK-L-MEGRTTIMVAHRLSTIRNADKIA 1213 (1253)
Q Consensus      1136 t~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~-~-~~~~TvI~IaHrl~ti~~~D~I~ 1213 (1253)
                      |.     .+|||||||||+||||++++|+|||||||||+||++||+.+++.+.+ . .+++|+|+||||++++..||+|+
T Consensus       467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~  541 (555)
T TIGR01194       467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII  541 (555)
T ss_pred             Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence            95     68999999999999999999999999999999999999999987753 3 46899999999999999999999


Q ss_pred             EEeCCEEEEe
Q 000851         1214 VLQQGKVAEI 1223 (1253)
Q Consensus      1214 Vl~~G~ive~ 1223 (1253)
                      ||++|+++|.
T Consensus       542 ~l~~G~i~~~  551 (555)
T TIGR01194       542 KLAAGCIVKD  551 (555)
T ss_pred             EEECCEEEEe
Confidence            9999999974

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-73  Score=695.31  Aligned_cols=456  Identities=25%  Similarity=0.416  Sum_probs=348.7

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH-HHHhccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i  454 (1253)
                      -|+++|++++|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++|
T Consensus         4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i   81 (501)
T PRK11288          4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV   81 (501)
T ss_pred             eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence            48999999999743  49999999999999999999999999999999999999999999999999875543 4567889


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          455 GLVSQEPALFAT-SIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      +||+|++.+|.. |++||+.++...     ....+..+     .+.+.++.+  |++........+||||||||++||||
T Consensus        82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara  154 (501)
T PRK11288         82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA  154 (501)
T ss_pred             EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence            999999988875 999999986421     11112111     122333333  33333445567899999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcCchH
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEY  606 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~y  606 (1253)
                      |+.+|++|||||||++||+.+.+.+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|++++.++..+...     
T Consensus       155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~-----  229 (501)
T PRK11288        155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD-----  229 (501)
T ss_pred             HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC-----
Confidence            999999999999999999999999999999875 47899999999999865 89999999999986542100000     


Q ss_pred             HHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhHHHHHH
Q 000851          607 AALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLG  686 (1253)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1253)
                                                                 .    +            ..   .             
T Consensus       230 -------------------------------------------~----~------------~~---~-------------  234 (501)
T PRK11288        230 -------------------------------------------R----D------------QL---V-------------  234 (501)
T ss_pred             -------------------------------------------H----H------------HH---H-------------
Confidence                                                       0    0            00   0             


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          687 SVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA  766 (1253)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~  766 (1253)
                                            .                                                        .
T Consensus       235 ----------------------~--------------------------------------------------------~  236 (501)
T PRK11288        235 ----------------------Q--------------------------------------------------------A  236 (501)
T ss_pred             ----------------------H--------------------------------------------------------H
Confidence                                  0                                                        0


Q ss_pred             HHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000851          767 ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAE  846 (1253)
Q Consensus       767 ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~  846 (1253)
                      +       ....   .                                                                
T Consensus       237 ~-------~~~~---~----------------------------------------------------------------  242 (501)
T PRK11288        237 M-------VGRE---I----------------------------------------------------------------  242 (501)
T ss_pred             h-------cCCC---c----------------------------------------------------------------
Confidence            0       0000   0                                                                


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          847 QLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYAL  926 (1253)
Q Consensus       847 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  926 (1253)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (501)
T PRK11288        243 --------------------------------------------------------------------------------  242 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccCcE
Q 000851          927 GLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 1006 (1253)
Q Consensus       927 ~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I 1006 (1253)
                                                                        .+   ....    .+. +.      .+..+
T Consensus       243 --------------------------------------------------~~---~~~~----~~~-~~------~~~~l  258 (501)
T PRK11288        243 --------------------------------------------------GD---IYGY----RPR-PL------GEVRL  258 (501)
T ss_pred             --------------------------------------------------cc---cccc----ccc-CC------CCcEE
Confidence                                                              00   0000    000 00      01248


Q ss_pred             EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCH-HHHhcceE
Q 000851         1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL-RSLRRKIG 1085 (1253)
Q Consensus      1007 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~-~~lR~~i~ 1085 (1253)
                      +++|++++       .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. +..|++++
T Consensus       259 ~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~  331 (501)
T PRK11288        259 RLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM  331 (501)
T ss_pred             EEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence            89999842       38999999999999999999999999999999999999999999999999875543 45678999


Q ss_pred             EEccCCC---ccc-ccHHHHhccCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChhHHHH
Q 000851         1086 LVQQEPA---LFS-TTIYENIKYGNEDA--------SEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1086 ~V~Qdp~---Lf~-gTIreNl~~g~~~~--------~d~ei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSgGQkQr 1152 (1253)
                      |+||+|.   +|+ .|+.||+.++....        ...+.     ...+.+++..+  |++ ........+||||||||
T Consensus       332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qr  404 (501)
T PRK11288        332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQQK  404 (501)
T ss_pred             EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHHHH
Confidence            9999973   554 79999998643110        11110     11122334333  231 12333445799999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      ++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|.|||+|||+++.+.. ||++++|++|++++.|+++|..
T Consensus       405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  484 (501)
T PRK11288        405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT  484 (501)
T ss_pred             HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence            999999999999999999999999999999999998875 48899999999999965 9999999999999999988765

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=2.3e-72  Score=611.04  Aligned_cols=470  Identities=29%  Similarity=0.485  Sum_probs=368.6

Q ss_pred             cEEEEEEEEECCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCCCCHH
Q 000851          376 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~  448 (1253)
                      -++++|++.+|...  ...++++|||+|++||++||||+||||||-..+.++|+.+-     -+|+|.++|.|+-..+..
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~   85 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER   85 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence            47889988888532  23399999999999999999999999999999999999864     479999999999888888


Q ss_pred             HHhc----ccEEEeccCc--cCcc-cHHHH----HhcCCC---CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCC
Q 000851          449 WLRE----QMGLVSQEPA--LFAT-SIANN----ILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ  514 (1253)
Q Consensus       449 ~~r~----~i~~v~Q~~~--lf~~-ti~~n----i~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~  514 (1253)
                      .+|.    +|++++|||.  |-+- ||..-    |.+-+.   .+..+++.+.++.+++.+-        .-.+...+.+
T Consensus        86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe  157 (534)
T COG4172          86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE  157 (534)
T ss_pred             HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence            7774    7999999995  2221 55444    443221   1123455555565554321        1234455679


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 000851          515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVV  591 (1253)
Q Consensus       515 LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~  591 (1253)
                      ||||||||+.||.||+.+|++||-||||.|||...+.+|.+.|+++.+  |..+++|||+|..++. ||||+||.+|+++
T Consensus       158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv  237 (534)
T COG4172         158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV  237 (534)
T ss_pred             cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence            999999999999999999999999999999999999999999999853  7899999999999987 7999999999999


Q ss_pred             EeeCcchhhhcC-chHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHH
Q 000851          592 ESGTHVDLISKG-GEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIW  670 (1253)
Q Consensus       592 ~~g~~~~l~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (1253)
                      |+|+.+++.+.+ ..|.+..-                                                           
T Consensus       238 E~~~t~~lF~~PqHpYTr~Ll-----------------------------------------------------------  258 (534)
T COG4172         238 ETGTTETLFAAPQHPYTRKLL-----------------------------------------------------------  258 (534)
T ss_pred             ecCcHHHHhhCCCChHHHHHH-----------------------------------------------------------
Confidence            999877776532 11211110                                                           


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          671 ELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL  750 (1253)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  750 (1253)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (534)
T COG4172         259 --------------------------------------------------------------------------------  258 (534)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000851          751 MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAA  830 (1253)
Q Consensus       751 ~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l  830 (1253)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (534)
T COG4172         259 --------------------------------------------------------------------------------  258 (534)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000851          831 VVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISG  910 (1253)
Q Consensus       831 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  910 (1253)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (534)
T COG4172         259 --------------------------------------------------------------------------------  258 (534)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 000851          911 FGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQ  990 (1253)
Q Consensus       911 ~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~  990 (1253)
                                                                                               +..|.-.
T Consensus       259 -------------------------------------------------------------------------~aeP~g~  265 (534)
T COG4172         259 -------------------------------------------------------------------------AAEPSGD  265 (534)
T ss_pred             -------------------------------------------------------------------------hcCCCCC
Confidence                                                                                     0000000


Q ss_pred             CCCCCCcccccccCcEEEEeEEEECCCCCC--------cccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCc
Q 000851          991 PDDPASKEVTEIKGNIELRNVSFKYPVRPD--------ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062 (1253)
Q Consensus       991 ~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~--------~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~ 1062 (1253)
                      +.    ..+.....-++.+||...||-++.        ..+++++||+.++||++||||+|||||||+-.+|+|+.+++ 
T Consensus       266 ~~----p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-  340 (534)
T COG4172         266 PP----PLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-  340 (534)
T ss_pred             CC----CCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-
Confidence            00    000001123677777777763221        24789999999999999999999999999999999999876 


Q ss_pred             cEEEECCccCCCCCHHH---HhcceEEEccCCC--ccc-ccHHHHhccC----CCCCC----HHHHHHHHHHhcHHHHHH
Q 000851         1063 GTVLIDGYDIRTLNLRS---LRRKIGLVQQEPA--LFS-TTIYENIKYG----NEDAS----EIELMKATKAANAHGFIS 1128 (1253)
Q Consensus      1063 G~I~idG~di~~i~~~~---lR~~i~~V~Qdp~--Lf~-gTIreNl~~g----~~~~~----d~ei~~al~~a~l~~~I~ 1128 (1253)
                      |+|.++|.+|...+.+.   +|+++-+|+|||+  |-+ .||.+=|.-|    .|..+    ++.+.+|++.+|++.-..
T Consensus       341 G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r  420 (534)
T COG4172         341 GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR  420 (534)
T ss_pred             ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh
Confidence            99999999999998764   7899999999997  322 4666655444    33333    456788888888865432


Q ss_pred             hCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhh
Q 000851         1129 RMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI 1206 (1253)
Q Consensus      1129 ~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti 1206 (1253)
                      .          .-...+|||||||||||||++-+|++++||||||+||..-.++|.+.|+++.+  +-+-++|||+|..+
T Consensus       421 ~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vv  490 (534)
T COG4172         421 N----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV  490 (534)
T ss_pred             h----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH
Confidence            2          12357999999999999999999999999999999999999999999998753  67999999999999


Q ss_pred             hc-cCEEEEEeCCEEEEecChhHHhhcccchHHHH
Q 000851         1207 RN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240 (1253)
Q Consensus      1207 ~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L 1240 (1253)
                      +. ||+|+||.+|+|||+|+-+++++++...|.+-
T Consensus       491 rAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~  525 (534)
T COG4172         491 RALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA  525 (534)
T ss_pred             HHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence            77 99999999999999999999999888888654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=2.4e-72  Score=688.80  Aligned_cols=471  Identities=21%  Similarity=0.380  Sum_probs=358.4

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHh-ccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR-EQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~i  454 (1253)
                      -|+++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..+
T Consensus        11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   88 (510)
T PRK15439         11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI   88 (510)
T ss_pred             eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence            4999999999974  3499999999999999999999999999999999999999999999999999877665554 469


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCCCC--HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000851          455 GLVSQEPALFAT-SIANNILLGKEDAS--MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~  531 (1253)
                      |||+|++.++.. |++||+.++.....  .+++.++++..           |++........+||||||||++|||||+.
T Consensus        89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~aL~~  157 (510)
T PRK15439         89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL-----------GCQLDLDSSAGSLEVADRQIVEILRGLMR  157 (510)
T ss_pred             EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHc-----------CCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence            999999988875 99999998753221  12333334333           33333445566899999999999999999


Q ss_pred             CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcCchHHHH
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEYAAL  609 (1253)
Q Consensus       532 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~  609 (1253)
                      +|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++....     .
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-----~  232 (510)
T PRK15439        158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-----I  232 (510)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-----H
Confidence            999999999999999999999999999874 47899999999999865 8999999999999988766543210     0


Q ss_pred             HHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhHHHHHHHHH
Q 000851          610 VNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVG  689 (1253)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (1253)
                      .......                                                                         
T Consensus       233 ~~~~~~~-------------------------------------------------------------------------  239 (510)
T PRK15439        233 IQAITPA-------------------------------------------------------------------------  239 (510)
T ss_pred             HHHHhCc-------------------------------------------------------------------------
Confidence            0000000                                                                         


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          690 AILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILS  769 (1253)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~  769 (1253)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (510)
T PRK15439        240 --------------------------------------------------------------------------------  239 (510)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          770 NEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLF  849 (1253)
Q Consensus       770 ~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~  849 (1253)
                       ..   .....+.                                                                   
T Consensus       240 -~~---~~~~~~~-------------------------------------------------------------------  248 (510)
T PRK15439        240 -AR---EKSLSAS-------------------------------------------------------------------  248 (510)
T ss_pred             -cc---ccccccc-------------------------------------------------------------------
Confidence             00   0000000                                                                   


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          850 LKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLW  929 (1253)
Q Consensus       850 ~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  929 (1253)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (510)
T PRK15439        249 --------------------------------------------------------------------------------  248 (510)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccCcEEEE
Q 000851          930 YASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELR 1009 (1253)
Q Consensus       930 ~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~ 1009 (1253)
                                                                     .+. ..  ..+...+..+      ..+..|+++
T Consensus       249 -----------------------------------------------~~~-~~--~~~~~~~~~~------~~~~~l~~~  272 (510)
T PRK15439        249 -----------------------------------------------QKL-WL--ELPGNRRQQA------AGAPVLTVE  272 (510)
T ss_pred             -----------------------------------------------ccc-cc--cccccccccC------CCCceEEEe
Confidence                                                           000 00  0000000000      011248999


Q ss_pred             eEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-HhcceEEEc
Q 000851         1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRKIGLVQ 1088 (1253)
Q Consensus      1010 ~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~-lR~~i~~V~ 1088 (1253)
                      |++.        .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+... +|++|+|||
T Consensus       273 ~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~  344 (510)
T PRK15439        273 DLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLP  344 (510)
T ss_pred             CCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECC
Confidence            9983        1599999999999999999999999999999999999999999999999998776654 467899999


Q ss_pred             cCC---Cccc-ccHHHHhccCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChhHHHHHHHHHH
Q 000851         1089 QEP---ALFS-TTIYENIKYGN----ED-ASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1089 Qdp---~Lf~-gTIreNl~~g~----~~-~~d~ei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |++   .+|. .|+.+|+....    +. ....+.     +..+.++++.+  |++ .........||||||||++||||
T Consensus       345 q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~la~a  417 (510)
T PRK15439        345 EDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVLIAKC  417 (510)
T ss_pred             CChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHHHHHHHHH
Confidence            996   3665 49999985320    10 011111     11223444443  333 23444556799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhcccch
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGI 1236 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~g~ 1236 (1253)
                      |+.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|+++..|+++++..+  ..
T Consensus       418 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~--~~  495 (510)
T PRK15439        418 LEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD--TI  495 (510)
T ss_pred             HhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCHH--HH
Confidence            999999999999999999999999999999875 48899999999999976 999999999999999999887642  33


Q ss_pred             HHHHH
Q 000851         1237 YKQLI 1241 (1253)
Q Consensus      1237 y~~L~ 1241 (1253)
                      ....+
T Consensus       496 ~~~~~  500 (510)
T PRK15439        496 MRLAF  500 (510)
T ss_pred             HHHhh
Confidence            44444

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=4.3e-71  Score=619.89  Aligned_cols=498  Identities=24%  Similarity=0.336  Sum_probs=456.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHH
Q 000851          724 DQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADR  803 (1253)
Q Consensus       724 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~  803 (1253)
                      .....+.+++.++.+++.+++..+..+.+.++...++..+|...+++|..-     +.+|+=. .--+|.++++++++..
T Consensus        63 v~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~-----~~~g~~~-Q~LrDL~qvR~Fltg~  136 (580)
T COG4618          63 VMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLR-----RGSGDGL-QPLRDLDQVRQFLTGT  136 (580)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhh-----cCCCccc-cchhhHHHHHHHHcCC
Confidence            344455556667777888999999999999999999999999998777652     2333211 2346999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCc
Q 000851          804 LSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGI  883 (1253)
Q Consensus       804 l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~  883 (1253)
                      -+..+.+..+.-+++.++|.+++++.++.+++..+++.+.++..+..++..++..+...+.+.+...+.+|.++|++.|+
T Consensus       137 g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM  216 (580)
T COG4618         137 GLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGM  216 (580)
T ss_pred             CcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999998888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000851          884 EKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETL  963 (1253)
Q Consensus       884 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~  963 (1253)
                      .....++|.+....+.....+.+-..+....++..+-.+....++-+|.+++..+++|.|.+++.-..+.-...|+...+
T Consensus       217 ~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI  296 (580)
T COG4618         217 LGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAI  296 (580)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHH
Confidence            99999999999999999888888888899999999999999999999999999999999999999888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCC
Q 000851          964 ALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQS 1043 (1253)
Q Consensus       964 ~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~S 1043 (1253)
                      ..|.++..+..+..|+.+++...+...+    ..+.+..+|.+.++++++.-|.. .+|+|+|+||+++|||-+||+|||
T Consensus       297 ~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPS  371 (580)
T COG4618         297 ANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPS  371 (580)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCC
Confidence            9999999999999999999876654332    23345567899999999976643 578999999999999999999999


Q ss_pred             CCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcH
Q 000851         1044 GSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123 (1253)
Q Consensus      1044 GSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l 1123 (1253)
                      |||||||.++|.|.+.|.+|.|++||-|+++++.+++-++|||.|||..||+|||+|||+-..++.+++.|.+|++.|+.
T Consensus       372 gSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgv  451 (580)
T COG4618         372 GSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGV  451 (580)
T ss_pred             CccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcCh
Confidence            99999999999999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccC
Q 000851         1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHR 1202 (1253)
Q Consensus      1124 ~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHr 1202 (1253)
                      ||.|.++|+||||.||++|..|||||||||+|||||+.+|.+++||||-|+||.+.|+.+.++|.+.+ +|+|+|+||||
T Consensus       452 HelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHR  531 (580)
T COG4618         452 HELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR  531 (580)
T ss_pred             HHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999875 69999999999


Q ss_pred             chhhhccCEEEEEeCCEEEEecChhHHhhc
Q 000851         1203 LSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1203 l~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ++.+..+|+|+||++|++..+|+-+|.+++
T Consensus       532 Ps~L~~~Dkilvl~~G~~~~FG~r~eVLa~  561 (580)
T COG4618         532 PSALASVDKILVLQDGRIAAFGPREEVLAK  561 (580)
T ss_pred             HHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence            999999999999999999999999999874

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=6.5e-71  Score=618.46  Aligned_cols=532  Identities=23%  Similarity=0.300  Sum_probs=458.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           56 SLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYL  135 (1253)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~  135 (1253)
                      .+++.+..++....|+++=++-|.+....    +. ..+.....+.+++.++..++.+++.....+++.++...+...+|
T Consensus        29 ~lfS~~INiL~L~~~lyMLQVyDRVL~S~----s~-~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~  103 (580)
T COG4618          29 GLFSAVINLLALTGPLYMLQVYDRVLPSR----SV-PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVF  103 (580)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccCC----Cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34445555666666667778888876421    11 22222333444555566778889999999999999999999999


Q ss_pred             HHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          136 QSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGA  215 (1253)
Q Consensus       136 ~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~  215 (1253)
                      ....+.+..--.    .|+=. ..-+|.+++++|++..-+..+-+.--+...+.++|.+++++.+++++...+++.+.++
T Consensus       104 ~a~~~~~l~~~~----~g~~~-Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~l  178 (580)
T COG4618         104 AASFSAPLLRRG----SGDGL-QPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALL  178 (580)
T ss_pred             HHHHhhHHhhcC----CCccc-cchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999877765432    22222 2337999999999874444444443344556778889999999988888888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          216 YTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWA  295 (1253)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1253)
                      --+..++..++..+...+.+..++-+.+|.++|++.|......++|.+.+.++.+...+..-..+.+..++..+-.+...
T Consensus       179 n~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs  258 (580)
T COG4618         179 NERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQS  258 (580)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            77778888888888899999999999999999999999999999999999999999888888888888888888888899


Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 000851          296 LLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAG  375 (1253)
Q Consensus       296 ~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~  375 (1253)
                      .++..|+|++++|++|.|.+++.-+.+.....|+-.....+..+..++.|.+|+.++|+..|...     .....|..+|
T Consensus       259 ~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~-----~~m~LP~P~g  333 (580)
T COG4618         259 AVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA-----ERMPLPAPQG  333 (580)
T ss_pred             HHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-----CCCCCCCCCc
Confidence            99999999999999999998886555556667899999999999999999999999998766533     2345667789


Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .+.++++++.-|+.++++|+|+||++++||.+|||||||||||||.++|.|.++|.+|.|++||.|++.++.+.+-++||
T Consensus       334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG  413 (580)
T COG4618         334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG  413 (580)
T ss_pred             eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC
Confidence            99999999998887778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000851          456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI  535 (1253)
Q Consensus       456 ~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~i  535 (1253)
                      |.|||..||+|||+|||+--.++.+.+.|.+|++.+++||.|.++|+||||.+|+.|..|||||||||+||||+|.||.+
T Consensus       414 YLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~l  493 (580)
T COG4618         414 YLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFL  493 (580)
T ss_pred             cCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcE
Confidence            99999999999999999877778889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          536 LLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       536 lilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ++||||-|+||.+-|+.+.++|.+.+ +|.|+|+||||.+.+..+|+|.||++|++...|+.+|.+++
T Consensus       494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~  561 (580)
T COG4618         494 VVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK  561 (580)
T ss_pred             EEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence            99999999999999999999999885 58999999999999999999999999999999999998764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.3e-72  Score=688.42  Aligned_cols=459  Identities=23%  Similarity=0.389  Sum_probs=348.3

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC--CCcEEEECCeeCCCCCHHH-Hhcc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TSGKILLDGHDLKSLQLKW-LREQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~r~~  453 (1253)
                      |+++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|  ++|+|.++|+++...+... .++.
T Consensus         2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (500)
T TIGR02633         2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG   79 (500)
T ss_pred             EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence            789999999974  3499999999999999999999999999999999999987  7999999999998766544 4667


Q ss_pred             cEEEeccCccCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhCcHHHHhcCCCCccccc-cCCCCCCChHHHHHHHH
Q 000851          454 MGLVSQEPALFAT-SIANNILLGKED------ASMDRVIEAAKAANAHSFVEGLPDGYQTQV-GEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       454 i~~v~Q~~~lf~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-g~~g~~LSgGq~qriai  525 (1253)
                      |+||+|++.++.. |++||+.++...      ...++..+     .+.+.++.+  |++... .....+||||||||++|
T Consensus        80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i  152 (500)
T TIGR02633        80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI  152 (500)
T ss_pred             EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence            9999999988865 999999886421      11122111     122333333  332221 23356899999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      ||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.++.... 
T Consensus       153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-  231 (500)
T TIGR02633       153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED-  231 (500)
T ss_pred             HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH-
Confidence            999999999999999999999999999999999874 47899999999999876 899999999999876532211000 


Q ss_pred             chHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhHHH
Q 000851          604 GEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYA  683 (1253)
Q Consensus       604 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1253)
                                                                                      ..              
T Consensus       232 ----------------------------------------------------------------~~--------------  233 (500)
T TIGR02633       232 ----------------------------------------------------------------DI--------------  233 (500)
T ss_pred             ----------------------------------------------------------------HH--------------
Confidence                                                                            00              


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          684 VLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSM  763 (1253)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~  763 (1253)
                              +                ..                                                     
T Consensus       234 --------~----------------~~-----------------------------------------------------  236 (500)
T TIGR02633       234 --------I----------------TM-----------------------------------------------------  236 (500)
T ss_pred             --------H----------------HH-----------------------------------------------------
Confidence                    0                00                                                     


Q ss_pred             HHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000851          764 FSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAF  843 (1253)
Q Consensus       764 ~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~  843 (1253)
                         .       +..+   .                                                             
T Consensus       237 ---~-------~~~~---~-------------------------------------------------------------  242 (500)
T TIGR02633       237 ---M-------VGRE---I-------------------------------------------------------------  242 (500)
T ss_pred             ---H-------hCcc---c-------------------------------------------------------------
Confidence               0       0000   0                                                             


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          844 VAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCS  923 (1253)
Q Consensus       844 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  923 (1253)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (500)
T TIGR02633       243 --------------------------------------------------------------------------------  242 (500)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccccccc
Q 000851          924 YALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIK 1003 (1253)
Q Consensus       924 ~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1253)
                                                                 .                ...+. .+ .+.      .+
T Consensus       243 -------------------------------------------~----------------~~~~~-~~-~~~------~~  255 (500)
T TIGR02633       243 -------------------------------------------T----------------SLYPH-EP-HEI------GD  255 (500)
T ss_pred             -------------------------------------------c----------------ccccc-cc-cCC------CC
Confidence                                                       0                00000 00 000      01


Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CccEEEECCccCCCCCH-HHHh
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-ISGTVLIDGYDIRTLNL-RSLR 1081 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-~~G~I~idG~di~~i~~-~~lR 1081 (1253)
                      .-|+++|++++|+...+.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|
T Consensus       256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~  335 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR  335 (500)
T ss_pred             ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence            148999999999522234699999999999999999999999999999999999995 89999999999865443 5678


Q ss_pred             cceEEEccCC---Cccc-ccHHHHhccCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChhH
Q 000851         1082 RKIGLVQQEP---ALFS-TTIYENIKYGNED-------ASEIELMKATKAANAHGFISRMPEGYQS-HVGDRGVQLSGGQ 1149 (1253)
Q Consensus      1082 ~~i~~V~Qdp---~Lf~-gTIreNl~~g~~~-------~~d~ei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSgGQ 1149 (1253)
                      ++++||||++   .+|+ .|+++|+.++...       ....+     ....+.++++.+  |+.. ........|||||
T Consensus       336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq  408 (500)
T TIGR02633       336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASPFLPIGRLSGGN  408 (500)
T ss_pred             CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCccCccccCCHHH
Confidence            8999999996   3665 5999999874210       11111     111222333333  2221 1233445799999


Q ss_pred             HHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 000851         1150 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1150 kQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      |||++|||||+.+|++|||||||++||+.+.+.+++.|++.. +|.|||+|||+++.+.. ||++++|++|+++..++..
T Consensus       409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~  488 (500)
T TIGR02633       409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH  488 (500)
T ss_pred             HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence            999999999999999999999999999999999999998864 57899999999999976 9999999999999877654


Q ss_pred             H
Q 000851         1228 Q 1228 (1253)
Q Consensus      1228 e 1228 (1253)
                      +
T Consensus       489 ~  489 (500)
T TIGR02633       489 A  489 (500)
T ss_pred             c
Confidence            4

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.5e-68  Score=706.33  Aligned_cols=216  Identities=27%  Similarity=0.423  Sum_probs=186.5

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      ..|+++|+++.|+++++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|+.+
T Consensus       927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred             ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence            3699999999996333459999999999999999999999999999999999999999999999999864 456678899


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          455 GLVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      |||+|++.+|+. |++|||.++..  ..+.    +++.+.++..           |++........+||||||||++|||
T Consensus      1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~v-----------gL~~~~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257      1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT-----------GLHHKRNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred             EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence            999999999975 99999987421  1111    2233333333           4444455666789999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||+.+|++||||||||+||+.+++.+++.|+++++|+|+|++||+++.+.. ||||++|++|++++.|+.++|.++
T Consensus      1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257      1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred             HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence            999999999999999999999999999999999889999999999999975 899999999999999999998765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.9e-72  Score=682.53  Aligned_cols=453  Identities=22%  Similarity=0.374  Sum_probs=346.9

Q ss_pred             EEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH-HHHhcccEEE
Q 000851          379 FSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQMGLV  457 (1253)
Q Consensus       379 ~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v  457 (1253)
                      ++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+++.++||
T Consensus         1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v   78 (491)
T PRK10982          1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV   78 (491)
T ss_pred             CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence            4689999974  349999999999999999999999999999999999999999999999999876543 4467789999


Q ss_pred             eccCccCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000851          458 SQEPALFAT-SIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       458 ~Q~~~lf~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~  531 (1253)
                      +|++.++.. |++||+.++...     .+.++..+     .+.+.++.+  |++........+||||||||++|||||+.
T Consensus        79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~  151 (491)
T PRK10982         79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY  151 (491)
T ss_pred             ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence            999987754 999999986421     11222111     122334444  45545566678899999999999999999


Q ss_pred             CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcCchHHHH
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEYAAL  609 (1253)
Q Consensus       532 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~  609 (1253)
                      +|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...     ..
T Consensus       152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-----~~  226 (491)
T PRK10982        152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-----KI  226 (491)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH-----HH
Confidence            999999999999999999999999998875 47899999999999865 899999999999987764332100     00


Q ss_pred             HHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhHHHHHHHHH
Q 000851          610 VNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVG  689 (1253)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (1253)
                      .                                                                               
T Consensus       227 ~-------------------------------------------------------------------------------  227 (491)
T PRK10982        227 I-------------------------------------------------------------------------------  227 (491)
T ss_pred             H-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          690 AILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILS  769 (1253)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~  769 (1253)
                                         .                                                        .+  
T Consensus       228 -------------------~--------------------------------------------------------~~--  230 (491)
T PRK10982        228 -------------------A--------------------------------------------------------MM--  230 (491)
T ss_pred             -------------------H--------------------------------------------------------HH--
Confidence                               0                                                        00  


Q ss_pred             CCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          770 NEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLF  849 (1253)
Q Consensus       770 ~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~  849 (1253)
                           +...                                                                       
T Consensus       231 -----~~~~-----------------------------------------------------------------------  234 (491)
T PRK10982        231 -----VGRS-----------------------------------------------------------------------  234 (491)
T ss_pred             -----hCCC-----------------------------------------------------------------------
Confidence                 0000                                                                       


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          850 LKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLW  929 (1253)
Q Consensus       850 ~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  929 (1253)
                                                                                                      
T Consensus       235 --------------------------------------------------------------------------------  234 (491)
T PRK10982        235 --------------------------------------------------------------------------------  234 (491)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccCcEEEE
Q 000851          930 YASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELR 1009 (1253)
Q Consensus       930 ~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~ 1009 (1253)
                                .                                    .      ...+.  +..+.      .+..|+++
T Consensus       235 ----------~------------------------------------~------~~~~~--~~~~~------~~~~i~~~  254 (491)
T PRK10982        235 ----------L------------------------------------T------QRFPD--KENKP------GEVILEVR  254 (491)
T ss_pred             ----------c------------------------------------c------ccccc--ccCCC------CCcEEEEe
Confidence                      0                                    0      00000  00000      01248999


Q ss_pred             eEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH-HHhcceEEEc
Q 000851         1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR-SLRRKIGLVQ 1088 (1253)
Q Consensus      1010 ~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~-~lR~~i~~V~ 1088 (1253)
                      |++++|.     ++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.++|+|
T Consensus       255 ~l~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~  329 (491)
T PRK10982        255 NLTSLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVT  329 (491)
T ss_pred             CcccccC-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcC
Confidence            9999752     489999999999999999999999999999999999999999999999999876654 4578899999


Q ss_pred             cCCC---ccc-ccHHHH-----hccCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChhHHHHHHH
Q 000851         1089 QEPA---LFS-TTIYEN-----IKYGNED---ASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1089 Qdp~---Lf~-gTIreN-----l~~g~~~---~~d~ei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSgGQkQrlaL 1155 (1253)
                      |++.   +|+ .|+.+|     +......   .+..+..     ..+.++++.+  |+. -.......+||||||||++|
T Consensus       330 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~l  402 (491)
T PRK10982        330 EERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQQKVII  402 (491)
T ss_pred             CchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHHHHHHH
Confidence            9963   555 477666     3321110   1111111     1122344443  221 12344556799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      |||++.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||++++|++|+++..++.+++
T Consensus       403 a~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~  478 (491)
T PRK10982        403 GRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT  478 (491)
T ss_pred             HHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence            999999999999999999999999999999998864 58999999999999965 999999999999988876543

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=3.9e-71  Score=677.21  Aligned_cols=452  Identities=22%  Similarity=0.289  Sum_probs=343.7

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++|+|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~   81 (490)
T PRK10938          4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD   81 (490)
T ss_pred             EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence            8899999999753  39999999999999999999999999999999999999999999999988876676677788999


Q ss_pred             EeccCcc--C-------cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          457 VSQEPAL--F-------ATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       457 v~Q~~~l--f-------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      ++|++.+  +       ..|+++|+.++.  ...+++.++++..++.+.           ......+||||||||++|||
T Consensus        82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~  148 (490)
T PRK10938         82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLCQ  148 (490)
T ss_pred             eccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHHH
Confidence            9998753  2       358999986542  113345555555544433           33445689999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcCch
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGE  605 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~  605 (1253)
                      ||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++.... .
T Consensus       149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~  227 (490)
T PRK10938        149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA-L  227 (490)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch-h
Confidence            9999999999999999999999999999999875 47899999999999876 8999999999999888755542210 0


Q ss_pred             HHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhHHHHH
Q 000851          606 YAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVL  685 (1253)
Q Consensus       606 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1253)
                      ..++..                                                                          
T Consensus       228 ~~~~~~--------------------------------------------------------------------------  233 (490)
T PRK10938        228 VAQLAH--------------------------------------------------------------------------  233 (490)
T ss_pred             hhhhhh--------------------------------------------------------------------------
Confidence            000000                                                                          


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          686 GSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFS  765 (1253)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~  765 (1253)
                                                     .                                               +
T Consensus       234 -------------------------------~-----------------------------------------------~  235 (490)
T PRK10938        234 -------------------------------S-----------------------------------------------E  235 (490)
T ss_pred             -------------------------------h-----------------------------------------------h
Confidence                                           0                                               0


Q ss_pred             HHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000851          766 AILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVA  845 (1253)
Q Consensus       766 ~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~  845 (1253)
                      +     +  ...+ .+.                                                               
T Consensus       236 ~-----~--~~~~-~~~---------------------------------------------------------------  244 (490)
T PRK10938        236 Q-----L--EGVQ-LPE---------------------------------------------------------------  244 (490)
T ss_pred             c-----c--Cccc-cCc---------------------------------------------------------------
Confidence            0     0  0000 000                                                               


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          846 EQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYA  925 (1253)
Q Consensus       846 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  925 (1253)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (490)
T PRK10938        245 --------------------------------------------------------------------------------  244 (490)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccCc
Q 000851          926 LGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGN 1005 (1253)
Q Consensus       926 ~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 1005 (1253)
                                                                               ... +. .+...     ...+..
T Consensus       245 ---------------------------------------------------------~~~-~~-~~~~~-----~~~~~~  260 (490)
T PRK10938        245 ---------------------------------------------------------PDE-PS-ARHAL-----PANEPR  260 (490)
T ss_pred             ---------------------------------------------------------ccc-cc-ccccc-----CCCCce
Confidence                                                                     000 00 00000     001124


Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CccEEEECCccCCC-CCHHHHhcc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-ISGTVLIDGYDIRT-LNLRSLRRK 1083 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-~~G~I~idG~di~~-i~~~~lR~~ 1083 (1253)
                      |+++|++++|++   .++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|++
T Consensus       261 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~  337 (490)
T PRK10938        261 IVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH  337 (490)
T ss_pred             EEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence            999999999963   3599999999999999999999999999999999998876 69999999987632 233457889


Q ss_pred             eEEEccCCCccc---ccHHHHhccCCC-------CCC---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1084 IGLVQQEPALFS---TTIYENIKYGNE-------DAS---EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~---gTIreNl~~g~~-------~~~---d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      |+|++|++.++.   .|+++++.++..       ...   ++++.++++..++.+.          .......+||||||
T Consensus       338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~  407 (490)
T PRK10938        338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQQ  407 (490)
T ss_pred             ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHHH
Confidence            999999987643   467777653210       011   1233444444443220          23334467999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC-C-ceEEEEccCchhhhc--cCEEEEEeCCEEEEec
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-G-RTTIMVAHRLSTIRN--ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~-~TvI~IaHrl~ti~~--~D~I~Vl~~G~ive~G 1224 (1253)
                      ||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ + .|||+|||+++.+..  ||++++|++|++++.-
T Consensus       408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence            999999999999999999999999999999999999998753 4 469999999999964  8999999999998753

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=8.2e-68  Score=655.45  Aligned_cols=525  Identities=18%  Similarity=0.182  Sum_probs=406.2

Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           41 FAAADKIDCVLMFLGSLGAFIHGATLPV-FFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFW  119 (1253)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (1253)
                      ++|.+++++ .++++++++++.+++... .|++.+.++|....   .    ...+.    .++++.++..++.+++.++.
T Consensus         5 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~---~----~~~~~----~~~~~~~~~~~~~~~~~~~~   72 (547)
T PRK10522          5 RLVWRQYRW-PFISVMALSLASAALGIGLIAFINQRLIETADT---S----LLVLP----EFLGLLLLLMAVTLGSQLAL   72 (547)
T ss_pred             HHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---c----chHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            345555544 344555666666555554 35677888886421   0    01111    11112222344667788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          120 MQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLT  199 (1253)
Q Consensus       120 ~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  199 (1253)
                      .+.+.++..++|.++|+|++++|+++|++ .++|++++|+++|++.+...+. .++.++..++.++++++++++++|.++
T Consensus        73 ~~~~~~~~~~lR~~l~~~ll~~~~~~~~~-~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~  150 (547)
T PRK10522         73 TTLGHHFVYRLRSEFIKRILDTHVERIEQ-LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKML  150 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhc-cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            88999999999999999999999999998 5999999999999999998766 467888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHH
Q 000851          200 LLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE---AKAIESYSHSLKEALKQGKKSG  276 (1253)
Q Consensus       200 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e---~~~~~~~~~~~~~~~~~~~~~~  276 (1253)
                      +++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++++ ++.+   +.+.++|++..++..+...+..
T Consensus       151 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (547)
T PRK10522        151 LVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRAD  229 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHH
Confidence            99999999998888889999999889999999999999999999999996 4443   4567888888877777666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000851          277 VAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKEN  356 (1253)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~  356 (1253)
                      ........+..++..+...+.+++++.. ..+  +.+.+..+.++......|+..+...+..++++..+.+|+.++++.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~  306 (547)
T PRK10522        230 TFHLSAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAP  306 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5544443333333322233333444332 112  3333333333333445688999999999999999999999997654


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEE
Q 000851          357 SHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL  436 (1253)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~  436 (1253)
                      ++.+ .  +.....+ ..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|+
T Consensus       307 ~~~~-~--~~~~~~~-~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~  381 (547)
T PRK10522        307 YKAE-F--PRPQAFP-DWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL  381 (547)
T ss_pred             cccc-c--ccccccC-cCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            3211 1  1111111 13579999999999843 3599999999999999999999999999999999999999999999


Q ss_pred             ECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCC
Q 000851          437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS  516 (1253)
Q Consensus       437 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS  516 (1253)
                      +||+|+++++.+++|++|+||+|||++|++|+++|   + ++.+++++.++++..++.+++. .|+|.     .+|.+||
T Consensus       382 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LS  451 (547)
T PRK10522        382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLS  451 (547)
T ss_pred             ECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCC
Confidence            99999999999999999999999999999999999   2 4566777777777776665553 23332     1478999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEe-
Q 000851          517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVES-  593 (1253)
Q Consensus       517 gGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~-  593 (1253)
                      ||||||++||||++++|++||||||||+||+++++.+.+.+.+..  +++|+|+||||+++++.||+|++|++|+++|. 
T Consensus       452 gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  531 (547)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence            999999999999999999999999999999999999999987653  48999999999999999999999999999986 


Q ss_pred             eCcch
Q 000851          594 GTHVD  598 (1253)
Q Consensus       594 g~~~~  598 (1253)
                      |++.+
T Consensus       532 ~~~~~  536 (547)
T PRK10522        532 GEERD  536 (547)
T ss_pred             CCchh
Confidence            44443

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.2e-69  Score=681.29  Aligned_cols=509  Identities=24%  Similarity=0.320  Sum_probs=427.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 000851           97 HALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGH  176 (1253)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~  176 (1253)
                      +...+.+++++..++..++.+.+...+.+..+.|-.++++++++-|++|||. +++|.+++|+++|++.+.+.+...+..
T Consensus       860 ~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~~  938 (1381)
T KOG0054|consen  860 YLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLEF  938 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHHH
Confidence            3445566666777777788888999999999999999999999999999998 699999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 000851          177 ALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAK  256 (1253)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~  256 (1253)
                      ++..++.+++.++++.+..|+..++++.+..++..+..++.+..+...+-.....+-.-+++.|+++|+-|||+|+.|++
T Consensus       939 ~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~r 1018 (1381)
T KOG0054|consen  939 FLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEER 1018 (1381)
T ss_pred             HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHH
Confidence            99999999999999999888887776666666666666666666666666666667778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC-CChHHHHHHHHHHHHHHHHHHHHHH
Q 000851          257 AIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVR-HGD-TNGGKAFTTIINVIFSGFALGQAAP  334 (1253)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~-lt~g~~~~~~~~~~~~~~~l~~l~~  334 (1253)
                      +.+++.+..+...+...-.....-++.--..++..+....   .+...+. .+. .++|.+=..+.|.+.....+..+..
T Consensus      1019 f~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~---~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR 1095 (1381)
T KOG0054|consen 1019 FIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLI---AALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVR 1095 (1381)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887766655443322222222233333332222   2222222 222 6677765566777777778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC--CCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcC
Q 000851          335 NLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLP--KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGP  412 (1253)
Q Consensus       335 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~  412 (1253)
                      ....+.....|.|||.++.+.++|.+ ...+...+++  +.+|+|+|+|++.+|..+-+.||+||||+|+|||++||||.
T Consensus      1096 ~~~elEn~m~SVERv~eY~~~~~E~p-~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGR 1174 (1381)
T KOG0054|consen 1096 QSSELENNMVSVERVLEYTDIPSEAP-LEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGR 1174 (1381)
T ss_pred             HHHHHHhcchhhhHHHHHhcCCCCCC-CCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCC
Confidence            89999999999999999998766621 1111111111  35699999999999975545699999999999999999999


Q ss_pred             CCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhC
Q 000851          413 SGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN  492 (1253)
Q Consensus       413 sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~  492 (1253)
                      +|||||||++.|.|+.+|.+|+|.|||.|+.++..++||++++++||||.||+||+|.|+-- ..+.+|+++++|++.++
T Consensus      1175 TGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP-f~e~sD~~IW~ALe~~~ 1253 (1381)
T KOG0054|consen 1175 TGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP-FDEYSDDEIWEALERCQ 1253 (1381)
T ss_pred             CCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc-ccccCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999852 23468999999999999


Q ss_pred             cHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccC
Q 000851          493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHR  572 (1253)
Q Consensus       493 ~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~  572 (1253)
                      +.+++.++|+|+|+.|.|+|.|+|-||||.+||||||+++++||+|||||+++|++|...||+.|++.-+++|||.||||
T Consensus      1254 Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHR 1333 (1381)
T KOG0054|consen 1254 LKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHR 1333 (1381)
T ss_pred             hHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhcCEEEEEeCCEEEEeeCcchhhhc-CchHHHHHH
Q 000851          573 LSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVN  611 (1253)
Q Consensus       573 l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~y~~~~~  611 (1253)
                      ++|+.++|||+|||+|+|+|.|+|.+|+++ ++.|+++..
T Consensus      1334 l~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1334 LNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred             cchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence            999999999999999999999999999987 566655543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-69  Score=667.23  Aligned_cols=479  Identities=23%  Similarity=0.385  Sum_probs=341.1

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++|+|+++  ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           ..|||
T Consensus         2 l~i~~ls~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~   68 (530)
T PRK15064          2 LSTANITMQFGAK--PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK   68 (530)
T ss_pred             EEEEEEEEEeCCc--EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence            7899999999743  4999999999999999999999999999999999999999999999873           36999


Q ss_pred             EeccCccCcc-cHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhCcHHHHhcCCCCccc
Q 000851          457 VSQEPALFAT-SIANNILLGKEDA----------------SMD---RVIEA----------AKAANAHSFVEGLPDGYQT  506 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~l~~g~~t  506 (1253)
                      ++|++.+|.. |++||+.++....                ..+   .+.+.          .....+.+.++.+  |++.
T Consensus        69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~  146 (530)
T PRK15064         69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPE  146 (530)
T ss_pred             EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCh
Confidence            9999988865 9999998753100                000   00000          0011223344444  4432


Q ss_pred             cc-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEE
Q 000851          507 QV-GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMV  584 (1253)
Q Consensus       507 ~~-g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~v  584 (1253)
                      .. .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+  .++|+|+|||+++.+.. ||+|++
T Consensus       147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~  224 (530)
T PRK15064        147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD  224 (530)
T ss_pred             hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence            22 244678999999999999999999999999999999999999999999975  47899999999999866 899999


Q ss_pred             EeCCEEE-EeeCcchhhhcCch-HHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCC
Q 000851          585 LKNGQVV-ESGTHVDLISKGGE-YAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQS  662 (1253)
Q Consensus       585 l~~G~i~-~~g~~~~l~~~~~~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (1253)
                      |++|+++ ..|++++.++.... +.....                                     +.    +       
T Consensus       225 l~~g~i~~~~g~~~~~~~~~~~~~~~~~~-------------------------------------~~----~-------  256 (530)
T PRK15064        225 LDYGELRVYPGNYDEYMTAATQARERLLA-------------------------------------DN----A-------  256 (530)
T ss_pred             EeCCEEEEecCCHHHHHHHHHHHHHHHHH-------------------------------------HH----H-------
Confidence            9999994 77877665431000 000000                                     00    0       


Q ss_pred             CCCcchHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHH
Q 000851          663 FAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYL  742 (1253)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  742 (1253)
                                                                             ....                     
T Consensus       257 -------------------------------------------------------~~~~---------------------  260 (530)
T PRK15064        257 -------------------------------------------------------KKKA---------------------  260 (530)
T ss_pred             -------------------------------------------------------HHHH---------------------
Confidence                                                                   0000                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          743 LQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAF  822 (1253)
Q Consensus       743 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~  822 (1253)
                                                                       ....+...                       
T Consensus       261 -------------------------------------------------~~~~~~~~-----------------------  268 (530)
T PRK15064        261 -------------------------------------------------QIAELQSF-----------------------  268 (530)
T ss_pred             -------------------------------------------------HHHHHHHH-----------------------
Confidence                                                             00000000                       


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHH
Q 000851          823 ILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQA  902 (1253)
Q Consensus       823 ~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~  902 (1253)
                                                 ..       +..                    +. .   .+       .....
T Consensus       269 ---------------------------~~-------~~~--------------------~~-~---~~-------~~~~~  283 (530)
T PRK15064        269 ---------------------------VS-------RFS--------------------AN-A---SK-------AKQAT  283 (530)
T ss_pred             ---------------------------HH-------Hhh--------------------cc-c---hh-------hHHHH
Confidence                                       00       000                    00 0   00       00000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          903 LLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGI  982 (1253)
Q Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~  982 (1253)
                                                                                             ....++...
T Consensus       284 -----------------------------------------------------------------------~~~~~~~~~  292 (530)
T PRK15064        284 -----------------------------------------------------------------------SRAKQIDKI  292 (530)
T ss_pred             -----------------------------------------------------------------------HHHHHHhhc
Confidence                                                                                   000000000


Q ss_pred             -hcccccCCCCCCC---CcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 000851          983 -LYRKTAIQPDDPA---SKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus       983 -~~~~~~~~~~~~~---~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~ 1058 (1253)
                       ....+......+.   .......+..|+++||+++|+.   .++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  369 (530)
T PRK15064        293 KLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL  369 (530)
T ss_pred             cccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence             0000000000000   0000001235999999999963   45999999999999999999999999999999999999


Q ss_pred             CCCccEEEECCccCCCCCHHHHhcceEEEccCCC--ccc-ccHHHHhccCC-CCCCHHHHHHHHHHhcHH-HHHHhCCCC
Q 000851         1059 DPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPA--LFS-TTIYENIKYGN-EDASEIELMKATKAANAH-GFISRMPEG 1133 (1253)
Q Consensus      1059 ~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~--Lf~-gTIreNl~~g~-~~~~d~ei~~al~~a~l~-~~I~~lp~g 1133 (1253)
                      +|++|+|.++|.           ++++||||++.  +++ .|+++|+.... +...++++.++++..++. +.       
T Consensus       370 ~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------  431 (530)
T PRK15064        370 EPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD-------  431 (530)
T ss_pred             CCCCeEEEECCc-----------eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH-------
Confidence            999999999873           57999999984  443 69999986532 222344566666666552 22       


Q ss_pred             ccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEE
Q 000851         1134 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKI 1212 (1253)
Q Consensus      1134 ldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I 1212 (1253)
                          ......+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.  +.|||+|||+++.+.. ||+|
T Consensus       432 ----~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i  505 (530)
T PRK15064        432 ----IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRI  505 (530)
T ss_pred             ----hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEE
Confidence                22334679999999999999999999999999999999999999999999886  4599999999999876 9999


Q ss_pred             EEEeCCEEE-EecChhHHhh
Q 000851         1213 AVLQQGKVA-EIGSHEQLLR 1231 (1253)
Q Consensus      1213 ~Vl~~G~iv-e~Gt~~eLl~ 1231 (1253)
                      ++|++|+++ ..|+++++++
T Consensus       506 ~~l~~g~i~~~~g~~~~~~~  525 (530)
T PRK15064        506 IEITPDGVVDFSGTYEEYLR  525 (530)
T ss_pred             EEEECCeEEEcCCCHHHHHH
Confidence            999999998 7899998876

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=7.4e-69  Score=715.72  Aligned_cols=212  Identities=27%  Similarity=0.429  Sum_probs=181.1

Q ss_pred             cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCccEEEECCccCCCCCHHHH
Q 000851         1005 NIELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD---PISGTVLIDGYDIRTLNLRSL 1080 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~---p~~G~I~idG~di~~i~~~~l 1080 (1253)
                      .++++||+++|+.++ .+++|+|||++|+|||++||+||||||||||+++|.|..+   |++|+|.+||.++.    ..+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~  834 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF  834 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence            379999999996332 3579999999999999999999999999999999999998   78899999999985    257


Q ss_pred             hcceEEEccCCC-cccccHHHHhccCC----C-CCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1081 RRKIGLVQQEPA-LFSTTIYENIKYGN----E-DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1081 R~~i~~V~Qdp~-Lf~gTIreNl~~g~----~-~~~d~e----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      |++++||+|++. ++..|+||||.++.    + +.++++    +.++++..++       .+..|+.+|+.|.+||||||
T Consensus       835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr  907 (1394)
T TIGR00956       835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR  907 (1394)
T ss_pred             hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence            899999999876 45679999998742    1 223333    3445554444       34468999998889999999


Q ss_pred             HHHHHHHHhccCCC-EEEEecccCCCChHHHHHHHHHHHHH-cCCceEEEEccCchhh--hccCEEEEEeCC-EEEEecC
Q 000851         1151 QRVAIARAILKNPS-ILLLDEATSALDTASENLIQEALDKL-MEGRTTIMVAHRLSTI--RNADKIAVLQQG-KVAEIGS 1225 (1253)
Q Consensus      1151 QrlaLARALlr~p~-ILlLDEaTS~LD~~te~~I~~~l~~~-~~~~TvI~IaHrl~ti--~~~D~I~Vl~~G-~ive~Gt 1225 (1253)
                      ||++|||||+.+|+ ||+||||||+||+.+...|++.|++. .+|+|||+++|+++..  ..||++++|++| +++++|+
T Consensus       908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~  987 (1394)
T TIGR00956       908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD  987 (1394)
T ss_pred             hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence            99999999999997 99999999999999999999999997 4689999999999973  569999999997 9999998


Q ss_pred             hh
Q 000851         1226 HE 1227 (1253)
Q Consensus      1226 ~~ 1227 (1253)
                      +.
T Consensus       988 ~~  989 (1394)
T TIGR00956       988 LG  989 (1394)
T ss_pred             cc
Confidence            74

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.9e-67  Score=651.42  Aligned_cols=482  Identities=22%  Similarity=0.337  Sum_probs=335.5

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      -|+++|++++|++ .+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++           +.+||
T Consensus         6 ~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~   73 (556)
T PRK11819          6 IYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG   73 (556)
T ss_pred             EEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence            4899999999972 13499999999999999999999999999999999999999999999975           24699


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCCC----------------C----------HHHHHHHHHHh-------CcHHHHhcCC
Q 000851          456 LVSQEPALFAT-SIANNILLGKEDA----------------S----------MDRVIEAAKAA-------NAHSFVEGLP  501 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~~----------------~----------~~~~~~~~~~~-------~~~~~i~~l~  501 (1253)
                      ||+|+|.+++. |++||+.++....                .          ..++.+.++.+       .+.+.++.+ 
T Consensus        74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  152 (556)
T PRK11819         74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL-  152 (556)
T ss_pred             EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC-
Confidence            99999999875 9999998753100                0          00111111111       122233333 


Q ss_pred             CCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cC
Q 000851          502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VD  580 (1253)
Q Consensus       502 ~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d  580 (1253)
                       |++ .......+||||||||++||||++.+|++||||||||+||+.+...+.+.|+++.  .|+|+|||+++.+.. ||
T Consensus       153 -gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d  228 (556)
T PRK11819        153 -RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAG  228 (556)
T ss_pred             -CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcC
Confidence             332 2345567899999999999999999999999999999999999999999998873  599999999999976 79


Q ss_pred             EEEEEeCCEEE-EeeCcchhhhcCchHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccc
Q 000851          581 TIMVLKNGQVV-ESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSS  659 (1253)
Q Consensus       581 ~i~vl~~G~i~-~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (1253)
                      +|++|++|+++ ..|++++..+....-..   .                                    ..   ...   
T Consensus       229 ~i~~l~~g~i~~~~g~~~~~~~~~~~~~~---~------------------------------------~~---~~~---  263 (556)
T PRK11819        229 WILELDRGRGIPWEGNYSSWLEQKAKRLA---Q------------------------------------EE---KQE---  263 (556)
T ss_pred             eEEEEeCCEEEEecCCHHHHHHHHHHHHH---H------------------------------------HH---HHH---
Confidence            99999999986 66776654321000000   0                                    00   000   


Q ss_pred             cCCCCCcchHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHH
Q 000851          660 DQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIP  739 (1253)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  739 (1253)
                                                                               ....                   
T Consensus       264 ---------------------------------------------------------~~~~-------------------  267 (556)
T PRK11819        264 ---------------------------------------------------------AARQ-------------------  267 (556)
T ss_pred             ---------------------------------------------------------HHHH-------------------
Confidence                                                                     0000                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          740 VYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFV  819 (1253)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~  819 (1253)
                                       ..++     ++                             ..                     
T Consensus       268 -----------------~~~~-----~~-----------------------------~~---------------------  275 (556)
T PRK11819        268 -----------------KALK-----RE-----------------------------LE---------------------  275 (556)
T ss_pred             -----------------HHHH-----HH-----------------------------HH---------------------
Confidence                             0000     00                             00                     


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHH
Q 000851          820 IAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPN  899 (1253)
Q Consensus       820 ~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~  899 (1253)
                            |                       .+       +. ...              +             ..  ...
T Consensus       276 ------~-----------------------~~-------~~-~~~--------------~-------------~~--~~~  289 (556)
T PRK11819        276 ------W-----------------------VR-------QS-PKA--------------R-------------QA--KSK  289 (556)
T ss_pred             ------H-----------------------HH-------Hh-hhh--------------h-------------HH--HHH
Confidence                  0                       00       00 000              0             00  000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          900 KQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPV  979 (1253)
Q Consensus       900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i  979 (1253)
                      +   +                                                                    .....+.
T Consensus       290 ~---~--------------------------------------------------------------------~~~~~~~  298 (556)
T PRK11819        290 A---R--------------------------------------------------------------------LARYEEL  298 (556)
T ss_pred             H---H--------------------------------------------------------------------HHHHHHh
Confidence            0   0                                                                    0000000


Q ss_pred             HHHh-cccccCCC-CCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 000851          980 FGIL-YRKTAIQP-DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus       980 ~~~~-~~~~~~~~-~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~ 1057 (1253)
                      .+.. ...++... ..+..  ....+..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|.|+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~  373 (556)
T PRK11819        299 LSEEYQKRNETNEIFIPPG--PRLGDKVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ  373 (556)
T ss_pred             hcccccccCCCceeecCCC--CCCCCeEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            0000 00000000 00000  0011235999999999963   4699999999999999999999999999999999999


Q ss_pred             CCCCccEEEECCccCCCCCHHHHhcceEEEccCC-Cccc-ccHHHHhccCCCC----CCHHHHHHHHHHhcHHHHHHhCC
Q 000851         1058 YDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP-ALFS-TTIYENIKYGNED----ASEIELMKATKAANAHGFISRMP 1131 (1253)
Q Consensus      1058 ~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp-~Lf~-gTIreNl~~g~~~----~~d~ei~~al~~a~l~~~I~~lp 1131 (1253)
                      ++|++|+|.+++ ++          +|+||||++ .++. .|++||+.++...    ..+.+..++++..++.+      
T Consensus       374 ~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------  436 (556)
T PRK11819        374 EQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG------  436 (556)
T ss_pred             CCCCCeEEEECC-ce----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh------
Confidence            999999999954 21          599999997 5654 5999999875321    11222233333333211      


Q ss_pred             CCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cC
Q 000851         1132 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-AD 1210 (1253)
Q Consensus      1132 ~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D 1210 (1253)
                          .........||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++. + .|+|+|||+++.+.. ||
T Consensus       437 ----~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d  510 (556)
T PRK11819        437 ----GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIAT  510 (556)
T ss_pred             ----hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCC
Confidence                1123344579999999999999999999999999999999999999999999986 3 499999999999866 99


Q ss_pred             EEEEEeC-CEEEE-ecChhHHhhc
Q 000851         1211 KIAVLQQ-GKVAE-IGSHEQLLRK 1232 (1253)
Q Consensus      1211 ~I~Vl~~-G~ive-~Gt~~eLl~~ 1232 (1253)
                      +|++|++ |++.+ .|+++++++.
T Consensus       511 ~i~~l~~~g~~~~~~g~~~~~~~~  534 (556)
T PRK11819        511 HILAFEGDSQVEWFEGNFQEYEED  534 (556)
T ss_pred             EEEEEECCCeEEEecCCHHHHHHH
Confidence            9999996 88874 6888888764

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=8.5e-67  Score=645.79  Aligned_cols=480  Identities=23%  Similarity=0.340  Sum_probs=335.6

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      -|+++|++++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++           +..||
T Consensus         4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~   71 (552)
T TIGR03719         4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG   71 (552)
T ss_pred             EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence            48999999999722 3499999999999999999999999999999999999999999999975           24699


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCC------------------CC--------HHHHHHHHHHhCcH-------HHHhcCC
Q 000851          456 LVSQEPALFAT-SIANNILLGKED------------------AS--------MDRVIEAAKAANAH-------SFVEGLP  501 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~------------------~~--------~~~~~~~~~~~~~~-------~~i~~l~  501 (1253)
                      ||+|+|.+++. |++||+.++...                  ..        .+++.++++.++.+       +.+..+ 
T Consensus        72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  150 (552)
T TIGR03719        72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL-  150 (552)
T ss_pred             EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-
Confidence            99999998865 999999875311                  00        11233333333322       233333 


Q ss_pred             CCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cC
Q 000851          502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VD  580 (1253)
Q Consensus       502 ~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d  580 (1253)
                       |++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.++  ++|+|+|||+++.+.. ||
T Consensus       151 -~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d  226 (552)
T TIGR03719       151 -RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAG  226 (552)
T ss_pred             -CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcC
Confidence             332 134556789999999999999999999999999999999999999999999876  3699999999999976 79


Q ss_pred             EEEEEeCCEEE-EeeCcchhhhcCchHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccc
Q 000851          581 TIMVLKNGQVV-ESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSS  659 (1253)
Q Consensus       581 ~i~vl~~G~i~-~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (1253)
                      +|++|++|+++ ..|++++......       .+.                                  +... .+.   
T Consensus       227 ~v~~l~~g~i~~~~g~~~~~~~~~~-------~~~----------------------------------~~~~-~~~---  261 (552)
T TIGR03719       227 WILELDRGRGIPWEGNYSSWLEQKE-------KRL----------------------------------EQEE-KEE---  261 (552)
T ss_pred             eEEEEECCEEEEecCCHHHHHHHHH-------HHH----------------------------------HHHH-HHH---
Confidence            99999999976 5676665432100       000                                  0000 000   


Q ss_pred             cCCCCCcchHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHH
Q 000851          660 DQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIP  739 (1253)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  739 (1253)
                                                                               .                      
T Consensus       262 ---------------------------------------------------------~----------------------  262 (552)
T TIGR03719       262 ---------------------------------------------------------S----------------------  262 (552)
T ss_pred             ---------------------------------------------------------H----------------------
Confidence                                                                     0                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          740 VYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFV  819 (1253)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~  819 (1253)
                                        +....                                                         
T Consensus       263 ------------------~~~~~---------------------------------------------------------  267 (552)
T TIGR03719       263 ------------------ARQKA---------------------------------------------------------  267 (552)
T ss_pred             ------------------HHHHH---------------------------------------------------------
Confidence                              00000                                                         


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHH
Q 000851          820 IAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPN  899 (1253)
Q Consensus       820 ~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~  899 (1253)
                                                           ..+..    ..+...        ..+       +  +.  ...
T Consensus       268 -------------------------------------~~~~~----~~~~~~--------~~~-------~--~~--~~~  287 (552)
T TIGR03719       268 -------------------------------------LKREL----EWVRSS--------PKA-------R--QA--KSK  287 (552)
T ss_pred             -------------------------------------HHHHH----HHHHhh--------hhh-------H--HH--HHH
Confidence                                                 00000    000000        000       0  00  000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          900 KQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPV  979 (1253)
Q Consensus       900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i  979 (1253)
                      .   +                                                                    .....+.
T Consensus       288 ~---~--------------------------------------------------------------------~~~~~~~  296 (552)
T TIGR03719       288 A---R--------------------------------------------------------------------LARYEEL  296 (552)
T ss_pred             H---H--------------------------------------------------------------------HHHHHhh
Confidence            0   0                                                                    0000000


Q ss_pred             HH-HhcccccCC-CCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 000851          980 FG-ILYRKTAIQ-PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus       980 ~~-~~~~~~~~~-~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~ 1057 (1253)
                      .+ .....++.. ...+..  ....+..|+++|++++|+.   .++|+|+||+|++||++||+||||||||||+++|.|+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~  371 (552)
T TIGR03719       297 LSQEFQKRNETAEIYIPPG--PRLGDKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ  371 (552)
T ss_pred             hhhcccccCCCceeecCCC--CCCCCeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            00 000000000 000000  0011235999999999963   4699999999999999999999999999999999999


Q ss_pred             CCCCccEEEECCccCCCCCHHHHhcceEEEccCCC-ccc-ccHHHHhccCCCC--CC--HHHHHHHHHHhcHHHHHHhCC
Q 000851         1058 YDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPA-LFS-TTIYENIKYGNED--AS--EIELMKATKAANAHGFISRMP 1131 (1253)
Q Consensus      1058 ~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~-Lf~-gTIreNl~~g~~~--~~--d~ei~~al~~a~l~~~I~~lp 1131 (1253)
                      ++|++|+|.+++ ++          +|+|+||++. +++ .|++||+.++...  ..  +.+..++++..+         
T Consensus       372 ~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~---------  431 (552)
T TIGR03719       372 EQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFN---------  431 (552)
T ss_pred             CCCCCeEEEECC-ce----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCC---------
Confidence            999999999954 21          6999999973 554 5999999875321  11  222223333333         


Q ss_pred             CCccc-cccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-c
Q 000851         1132 EGYQS-HVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-A 1209 (1253)
Q Consensus      1132 ~gldt-~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~ 1209 (1253)
                        ++. ........||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..  .|||+|||+++.+.. |
T Consensus       432 --l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~  507 (552)
T TIGR03719       432 --FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIA  507 (552)
T ss_pred             --CChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhC
Confidence              221 1233446799999999999999999999999999999999999999999999873  499999999999876 9


Q ss_pred             CEEEEEeC-CEEEE-ecChhHHhh
Q 000851         1210 DKIAVLQQ-GKVAE-IGSHEQLLR 1231 (1253)
Q Consensus      1210 D~I~Vl~~-G~ive-~Gt~~eLl~ 1231 (1253)
                      |+|++|++ |++++ .|+++++.+
T Consensus       508 d~i~~l~~~~~~~~~~g~~~~~~~  531 (552)
T TIGR03719       508 THILAFEGDSHVEWFEGNYSEYEE  531 (552)
T ss_pred             CEEEEEECCCeEEEeCCCHHHHHH
Confidence            99999997 68874 588877765

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=9.7e-66  Score=644.49  Aligned_cols=532  Identities=17%  Similarity=0.134  Sum_probs=441.5

Q ss_pred             HHHHHHHhhchhhH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCcchhhhhHHHHHHHHHHHHHHHHHH
Q 000851           36 SFLSLFAAADKIDC----VLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVS  111 (1253)
Q Consensus        36 ~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (1253)
                      .++++++|++|+++    ..+++.+++.++.+++....|++.+.++|.+...  +...+...+..++++++.+.++..+.
T Consensus        78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~--~~~~f~~~l~~~~l~~~~~~~~~~~~  155 (659)
T TIGR00954        78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR--SPRNFAWILFKWFLIAPPASFINSAI  155 (659)
T ss_pred             HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888888754    2456677777888888888999999999987532  11112111222333334444555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          112 AWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVG  191 (1253)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  191 (1253)
                      .++..++......++..++|.+++++....++.+||+  ++|++++|+++|++.+.+.+.+.+..++..++.+++.++++
T Consensus       156 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L  233 (659)
T TIGR00954       156 KYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL  233 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777888888999999999999999999999985  68999999999999999999999999999999999888888


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000851          192 FT-SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALK  270 (1253)
Q Consensus       192 ~~-~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~  270 (1253)
                      +. ++|.+++++++.+|+..++..++.+++.+...+.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+
T Consensus       234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~  313 (659)
T TIGR00954       234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE  313 (659)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            76 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCCChHHHHH-HHHH---HHHHHHHHHHHHHHHHHH
Q 000851          271 QGKKSGVAKGIGVGLTYGLLFC--AWALLLWYAGILVR-H----GDTNGGKAFT-TIIN---VIFSGFALGQAAPNLAAI  339 (1253)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----g~lt~g~~~~-~~~~---~~~~~~~l~~l~~~~~~~  339 (1253)
                      ...+..+..+...++..++...  ..++.++.|...+. +    |.+|.|.+++ ++.+   +.....|+..+...+..+
T Consensus       314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i  393 (659)
T TIGR00954       314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM  393 (659)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888888777543  23333334443332 2    7899998776 3333   334467899999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCC----C--CC--CC-------------CCCCCCCCcEEEEEEEEECCCCCCcccccce
Q 000851          340 AKGKAAAANIISIIKENSHSSER----P--GD--DG-------------ITLPKLAGQIEFSEVCFAYPSRPHMVFENLN  398 (1253)
Q Consensus       340 ~~~~~a~~ri~~~l~~~~~~~~~----~--~~--~~-------------~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~  398 (1253)
                      +++.++.+|++++++.+++.+..    +  .+  +.             .......+.|+++||+|+|+++ +++|+|+|
T Consensus       394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~is  472 (659)
T TIGR00954       394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLS  472 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-Ceeeecce
Confidence            99999999999999865432100    0  00  00             0011123569999999999743 35999999


Q ss_pred             EEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCC--
Q 000851          399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK--  476 (1253)
Q Consensus       399 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~--  476 (1253)
                      |++++||+++|+||||||||||+++|+|+++|++|+|.+++           |++|+||+|+|++|++|++|||.++.  
T Consensus       473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~  541 (659)
T TIGR00954       473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS  541 (659)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence            99999999999999999999999999999999999999874           56899999999999999999999974  


Q ss_pred             -----CCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHH
Q 000851          477 -----EDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL  551 (1253)
Q Consensus       477 -----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~  551 (1253)
                           ++.+++++.++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++
T Consensus       542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~  619 (659)
T TIGR00954       542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG  619 (659)
T ss_pred             hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence                 34567889999999999999988 999999986 56799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeC
Q 000851          552 IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN  587 (1253)
Q Consensus       552 ~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~  587 (1253)
                      .+.+.+++.  ++|+|+||||+++++.||+|++|+.
T Consensus       620 ~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~  653 (659)
T TIGR00954       620 YMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG  653 (659)
T ss_pred             HHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence            999999874  8999999999999999999999973

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=2.3e-65  Score=633.64  Aligned_cols=472  Identities=19%  Similarity=0.250  Sum_probs=378.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          738 IPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTA  817 (1253)
Q Consensus       738 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~  817 (1253)
                      .++.++..++...++.++..++|.++|+++++.|++||+  ++++|++++|+++|++.+...+. .+..++.+++.++++
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~  138 (547)
T PRK10522         62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGS  138 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            446677888899999999999999999999999999997  48899999999999999998765 477788888889999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcH---HHHHHHHHHH
Q 000851          818 FVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIE---KRISIQFASE  894 (1253)
Q Consensus       818 ~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e---~~~~~~~~~~  894 (1253)
                      +++++.++|.+++++++++|+.+++.+...+..++..++.++...+..+.+.|.++|+++++ ++.+   +.+.+++.+.
T Consensus       139 ~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~  217 (547)
T PRK10522        139 AAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPD  217 (547)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHH
Confidence            99999999999999999999988877777777777777788888999999999999999995 4443   4567888887


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          895 LSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQ  974 (1253)
Q Consensus       895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  974 (1253)
                      .++..+...+..........+...+..+..++.++++..+   +..+.+.......+......++..+...++.+..+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~  294 (547)
T PRK10522        218 AQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQV  294 (547)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766665555444433333333333333333333322   1122233222233333345688888889999999999


Q ss_pred             HHHHHHHHhcccccCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHH
Q 000851          975 ALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLV 1054 (1253)
Q Consensus       975 a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL 1054 (1253)
                      +.+|+.++.+.+++.+.+.  ..+ .+..+.|+++||+|+||+  +.++|+|+||+|+|||++|||||||||||||+++|
T Consensus       295 a~~ri~~l~~~~~~~~~~~--~~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll  369 (547)
T PRK10522        295 AFNKLNKLALAPYKAEFPR--PQA-FPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLL  369 (547)
T ss_pred             HHHHHHHHhcccccccccc--ccc-cCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            9999998865432211111  111 111357999999999983  34699999999999999999999999999999999


Q ss_pred             hccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCc
Q 000851         1055 MRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGY 1134 (1253)
Q Consensus      1055 ~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gl 1134 (1253)
                      +|+|+|++|+|.+||+|+++++.+.+|++|+||||||.+|++|+++|   + ++.++++++++++.+++.+++.. |+|.
T Consensus       370 ~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~  444 (547)
T PRK10522        370 TGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR  444 (547)
T ss_pred             hCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC
Confidence            99999999999999999999999999999999999999999999999   2 45678888888888877666542 4442


Q ss_pred             cccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhccCEE
Q 000851         1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKI 1212 (1253)
Q Consensus      1135 dt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I 1212 (1253)
                           .+|.+||||||||++||||++++|+|||||||||+||+++|+.+.+.+.+..  +++|+|+||||+++++.||+|
T Consensus       445 -----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i  519 (547)
T PRK10522        445 -----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRL  519 (547)
T ss_pred             -----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEE
Confidence                 1478999999999999999999999999999999999999999999998654  489999999999999999999


Q ss_pred             EEEeCCEEEEe-cChhHHhh
Q 000851         1213 AVLQQGKVAEI-GSHEQLLR 1231 (1253)
Q Consensus      1213 ~Vl~~G~ive~-Gt~~eLl~ 1231 (1253)
                      ++|++|+++|. |++.+-..
T Consensus       520 ~~l~~G~i~e~~~~~~~~~~  539 (547)
T PRK10522        520 LEMRNGQLSELTGEERDAAS  539 (547)
T ss_pred             EEEECCEEEEecCCchhhhh
Confidence            99999999987 66655443

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-65  Score=641.34  Aligned_cols=201  Identities=27%  Similarity=0.422  Sum_probs=165.4

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      -|+++||+++|+   +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++.           .++
T Consensus       312 ~l~~~~l~~~y~---~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i  377 (638)
T PRK10636        312 LLKMEKVSAGYG---DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL  377 (638)
T ss_pred             eEEEEeeEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence            599999999996   346999999999999999999999999999999999999999999999741           269


Q ss_pred             EEEccCC--Cccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000851         1085 GLVQQEP--ALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 1161 (1253)
Q Consensus      1085 ~~V~Qdp--~Lf~-gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr 1161 (1253)
                      +|++|++  .+.. .|+.+|+....+...++++.+.++..++..          ..+......||||||||++|||||+.
T Consensus       378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~  447 (638)
T PRK10636        378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQ  447 (638)
T ss_pred             EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence            9999985  3443 488888742222223344555555544421          11223345799999999999999999


Q ss_pred             CCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEE-EecChhHHhh
Q 000851         1162 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA-EIGSHEQLLR 1231 (1253)
Q Consensus      1162 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~iv-e~Gt~~eLl~ 1231 (1253)
                      +|++|||||||++||+.+.+.+.+.|+++ + .|||+|||+++.+.. ||+|++|++|+++ ..|++++..+
T Consensus       448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  517 (638)
T PRK10636        448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ  517 (638)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence            99999999999999999999999999986 4 499999999999966 9999999999998 6799988743

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.3e-64  Score=668.52  Aligned_cols=213  Identities=23%  Similarity=0.392  Sum_probs=177.5

Q ss_pred             cEEEEeEEEECCCC----------CCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC--CccEEEECCccC
Q 000851         1005 NIELRNVSFKYPVR----------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP--ISGTVLIDGYDI 1072 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~----------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p--~~G~I~idG~di 1072 (1253)
                      .+.|+||++..+..          ....+|+|+|++|+|||.+||+||||||||||+++|+|..++  .+|+|.+||.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            69999999987532          123699999999999999999999999999999999999874  689999999886


Q ss_pred             CCCCHHHHhcceEEEccCCCccc-ccHHHHhccCC----C-CCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCC
Q 000851         1073 RTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGN----E-DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRG 1142 (1253)
Q Consensus      1073 ~~i~~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~----~-~~~d~e----i~~al~~a~l~~~I~~lp~gldt~vge~G 1142 (1253)
                      +   ...+|+.+|||+|++.+++ .|++|||.++.    + +.+.++    +.++++..++.+       -.|+.+|..+
T Consensus       947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~ 1016 (1470)
T PLN03140        947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPG 1016 (1470)
T ss_pred             C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCC
Confidence            4   3457788999999988776 59999998642    1 223322    445565555543       2467777544


Q ss_pred             -CCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchh-h-hccCEEEEEeC-
Q 000851         1143 -VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLST-I-RNADKIAVLQQ- 1217 (1253)
Q Consensus      1143 -~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t-i-~~~D~I~Vl~~- 1217 (1253)
                       ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|||+++|+++. + ..||++++|++ 
T Consensus      1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140       1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred             CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence             6799999999999999999999999999999999999999999999975 58999999999984 4 56999999996 


Q ss_pred             CEEEEecChh
Q 000851         1218 GKVAEIGSHE 1227 (1253)
Q Consensus      1218 G~ive~Gt~~ 1227 (1253)
                      |+++.+|++.
T Consensus      1097 G~~v~~G~~~ 1106 (1470)
T PLN03140       1097 GQVIYSGPLG 1106 (1470)
T ss_pred             CEEEEECCcc
Confidence            8999999864

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=3.9e-64  Score=629.91  Aligned_cols=201  Identities=24%  Similarity=0.439  Sum_probs=164.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      -|+++||+++|++   .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++          +|
T Consensus       319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i  384 (635)
T PRK11147        319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV  384 (635)
T ss_pred             eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence            4999999999963   46999999999999999999999999999999999999999999999 4432          59


Q ss_pred             EEEccCC-Cccc-ccHHHHhccCCCCC--C--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1085 GLVQQEP-ALFS-TTIYENIKYGNEDA--S--EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1085 ~~V~Qdp-~Lf~-gTIreNl~~g~~~~--~--d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      +|++|++ .+++ .|+.||+.++.+..  .  +.++.+.++..++.      ++..+.    ....||||||||++||||
T Consensus       385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~----~~~~LSgGekqRl~la~a  454 (635)
T PRK11147        385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH------PKRAMT----PVKALSGGERNRLLLARL  454 (635)
T ss_pred             EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC------HHHHhC----hhhhCCHHHHHHHHHHHH
Confidence            9999986 4655 49999998754321  1  22233333333221      011233    345799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEe-CCEEEEe-cChhHHhh
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ-QGKVAEI-GSHEQLLR 1231 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~-~G~ive~-Gt~~eLl~ 1231 (1253)
                      |+.+|++|||||||++||+.+.+.+.+.|++.  +.|||+|||+++.+.. ||+|++|+ +|+++++ |++++.+.
T Consensus       455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~  528 (635)
T PRK11147        455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ  528 (635)
T ss_pred             HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence            99999999999999999999999999999876  4599999999999865 99999998 8999875 78887754

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-64  Score=585.63  Aligned_cols=454  Identities=26%  Similarity=0.415  Sum_probs=356.3

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH-HHHhccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i  454 (1253)
                      -++++|++++|++-  ++|+|+||++.+||++||+|.||+|||||+|+|+|.|+|++|+|.+||+++.-.++ +.....|
T Consensus         8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI   85 (500)
T COG1129           8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI   85 (500)
T ss_pred             eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence            48899999999853  49999999999999999999999999999999999999999999999999986655 4566689


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCCCC------HHHHHHHHHHhCcHHHHhcCC--CCccccccCCCCCCChHHHHHHHH
Q 000851          455 GLVSQEPALFAT-SIANNILLGKEDAS------MDRVIEAAKAANAHSFVEGLP--DGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~~~------~~~~~~~~~~~~~~~~i~~l~--~g~~t~~g~~g~~LSgGq~qriai  525 (1253)
                      +.|+||..|++. ||.|||.+|++...      ..+..+.++     +.+.++-  ...++.+    .+||+||||.|+|
T Consensus        86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~~~~~~~v----~~LsiaqrQ~VeI  156 (500)
T COG1129          86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLDIDPDTLV----GDLSIAQRQMVEI  156 (500)
T ss_pred             EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCCCChhhhh----hhCCHHHHHHHHH
Confidence            999999999976 99999999986532      233333322     2333331  1234444    5799999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCc-chhhhc
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTH-VDLISK  602 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~-~~l~~~  602 (1253)
                      |||+..+++|+|||||||+|+....+.+.+.+++++ +|.++|+||||++++.. ||||.||+||+.+..++. .++-. 
T Consensus       157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~-  235 (500)
T COG1129         157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE-  235 (500)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH-
Confidence            999999999999999999999999999999999986 68999999999999876 899999999999876531 11100 


Q ss_pred             CchHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhHH
Q 000851          603 GGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPY  682 (1253)
Q Consensus       603 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (1253)
                                                                     .                    .           
T Consensus       236 -----------------------------------------------~--------------------~-----------  237 (500)
T COG1129         236 -----------------------------------------------D--------------------E-----------  237 (500)
T ss_pred             -----------------------------------------------H--------------------H-----------
Confidence                                                           0                    0           


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          683 AVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLS  762 (1253)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~  762 (1253)
                                              ++..                                                    
T Consensus       238 ------------------------lv~~----------------------------------------------------  241 (500)
T COG1129         238 ------------------------LVRL----------------------------------------------------  241 (500)
T ss_pred             ------------------------HHHH----------------------------------------------------
Confidence                                    0000                                                    


Q ss_pred             HHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000851          763 MFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGA  842 (1253)
Q Consensus       763 ~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~  842 (1253)
                                        -.|+                                                          
T Consensus       242 ------------------MvGr----------------------------------------------------------  245 (500)
T COG1129         242 ------------------MVGR----------------------------------------------------------  245 (500)
T ss_pred             ------------------hhCc----------------------------------------------------------
Confidence                              0000                                                          


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          843 FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLC  922 (1253)
Q Consensus       843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  922 (1253)
                                                                                                      
T Consensus       246 --------------------------------------------------------------------------------  245 (500)
T COG1129         246 --------------------------------------------------------------------------------  245 (500)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccc
Q 000851          923 SYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEI 1002 (1253)
Q Consensus       923 ~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1253)
                                                                                ++-+..+. . ..+     ...
T Consensus       246 ----------------------------------------------------------~~~~~~~~-~-~~~-----~~~  260 (500)
T COG1129         246 ----------------------------------------------------------ELEDLFPE-P-PEE-----GIG  260 (500)
T ss_pred             ----------------------------------------------------------chhhhccc-c-ccc-----CCC
Confidence                                                                      00000000 0 000     001


Q ss_pred             cCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH-HHh
Q 000851         1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR-SLR 1081 (1253)
Q Consensus      1003 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~-~lR 1081 (1253)
                      ...++++|++..       ..++|+||++++||++||.|-=|||+|-++++|+|..++.+|+|.+||.++.--++. ..+
T Consensus       261 ~~~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~  333 (500)
T COG1129         261 EPVLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK  333 (500)
T ss_pred             CcEEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHH
Confidence            123778888742       147999999999999999999999999999999999999999999999998877654 789


Q ss_pred             cceEEEccCCC----cccccHHHHhccCC-CCCCHH-HHHHHHHHhcHHHHHHhCCC---CccccccCCCCCCChhHHHH
Q 000851         1082 RKIGLVQQEPA----LFSTTIYENIKYGN-EDASEI-ELMKATKAANAHGFISRMPE---GYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1082 ~~i~~V~Qdp~----Lf~gTIreNl~~g~-~~~~d~-ei~~al~~a~l~~~I~~lp~---gldt~vge~G~~LSgGQkQr 1152 (1253)
                      ..|+|||-|..    +...||++|+.+.. ...+.. -+....++.-..+++.+|.-   ..+.++    .+||||.+||
T Consensus       334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQK  409 (500)
T COG1129         334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQK  409 (500)
T ss_pred             cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhh
Confidence            99999998874    45679999998752 111100 24455566667778877632   233344    5799999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhh-ccCEEEEEeCCEEEEecChh
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      ++|||+|..+|+||||||||.++|..+.+.|.+.|+++. +|++||+||..++++. .||||+||.+|+++..=+.+
T Consensus       410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~  486 (500)
T COG1129         410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE  486 (500)
T ss_pred             HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence            999999999999999999999999999999999999975 6899999999999986 59999999999998744433

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=2.8e-64  Score=629.06  Aligned_cols=200  Identities=30%  Similarity=0.411  Sum_probs=164.7

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|++  ..++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++           +.+|
T Consensus       508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i  574 (718)
T PLN03073        508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM  574 (718)
T ss_pred             eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence            5999999999963  23589999999999999999999999999999999999999999999875           3479


Q ss_pred             EEEccCCCcccccHHHHhcc----CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000851         1085 GLVQQEPALFSTTIYENIKY----GNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~gTIreNl~~----g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALl 1160 (1253)
                      +|++|++. ...++.+|...    ..+..+++++.++++..++.+..          .......||||||||++||||++
T Consensus       575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~  643 (718)
T PLN03073        575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF  643 (718)
T ss_pred             EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHh
Confidence            99999973 22345555321    12234566777777777664211          12234679999999999999999


Q ss_pred             cCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEE-EecChhHHh
Q 000851         1161 KNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA-EIGSHEQLL 1230 (1253)
Q Consensus      1161 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~iv-e~Gt~~eLl 1230 (1253)
                      .+|++|||||||++||+.+.+.+.+.|.+. + .|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus       644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~  713 (718)
T PLN03073        644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK  713 (718)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence            999999999999999999999999999875 3 499999999999976 9999999999998 568877653

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=3.7e-61  Score=603.13  Aligned_cols=529  Identities=17%  Similarity=0.121  Sum_probs=433.5

Q ss_pred             HHHHHHHhhchhH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000851          669 IWELLKLNAAEWP-----YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLL  743 (1253)
Q Consensus       669 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  743 (1253)
                      +.+++++.+++|.     .+++.+++.++........++..+.+++.....+..........+.++++++.++..+..++
T Consensus        79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~  158 (659)
T TIGR00954        79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL  158 (659)
T ss_pred             HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666667665     45566666666666666777777777776654332222222334444555556666667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          744 QHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFI  823 (1253)
Q Consensus       744 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~  823 (1253)
                      ..++......++..++|+..+++....+++|||.   ++|++.+|+++|++.+.+.+...+..++..++.++++++.++.
T Consensus       159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~  235 (659)
T TIGR00954       159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT  235 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888899999999999988889999973   6899999999999999999999999999999999988887776


Q ss_pred             -HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHH
Q 000851          824 -LSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQA  902 (1253)
Q Consensus       824 -~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~  902 (1253)
                       ++|.+++++++.+|+..++..+..+.+.+...+.++..++..+.+.|.++|+++|++|+.++.+.+++.+..++..+..
T Consensus       236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~  315 (659)
T TIGR00954       236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL  315 (659)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999998889889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----cCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000851          903 LLRGHISGFGYGVSQLLSLC--SYALGLWYASVLIK-Q----KGSNFGDIMKSFMV----LIITALAVAETLALAPDIVK  971 (1253)
Q Consensus       903 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv~-~----~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  971 (1253)
                      .+..++.++...+..++...  ..++.++.|...+. .    |.++.|.++..+..    ......++..+.....++..
T Consensus       316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~  395 (659)
T TIGR00954       316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR  395 (659)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888887643  22223333343332 2    67888877664332    34456788888899999999


Q ss_pred             HHHHHHHHHHHhcccccCC------CCCCC---C-------------cccccccCcEEEEeEEEECCCCCCcccccceeE
Q 000851          972 GSQALGPVFGILYRKTAIQ------PDDPA---S-------------KEVTEIKGNIELRNVSFKYPVRPDITIFENLNL 1029 (1253)
Q Consensus       972 ~~~a~~~i~~~~~~~~~~~------~~~~~---~-------------~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl 1029 (1253)
                      +..+.+|+.++++.+++..      +..+.   .             .......+.|+++||+|+||+  +.++|+|+||
T Consensus       396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl  473 (659)
T TIGR00954       396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF  473 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence            9999999999986543211      00000   0             001113356999999999973  3469999999


Q ss_pred             EEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCC---
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN--- 1106 (1253)
Q Consensus      1030 ~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~--- 1106 (1253)
                      +|++||++||+||||||||||+++|+|+++|++|+|.+|+           |++++||||+|.+|++|++|||.++.   
T Consensus       474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~  542 (659)
T TIGR00954       474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE  542 (659)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence            9999999999999999999999999999999999999874           67899999999999999999999864   


Q ss_pred             ----CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHH
Q 000851         1107 ----EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182 (1253)
Q Consensus      1107 ----~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~ 1182 (1253)
                          ++.++++++++++.+++++++.+ |.||||..+ .+.+||||||||++|||||+++|++||||||||+||+++++.
T Consensus       543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~  620 (659)
T TIGR00954       543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY  620 (659)
T ss_pred             hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence                34578899999999999999988 999999987 567999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCceEEEEccCchhhhccCEEEEEeC
Q 000851         1183 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1217 (1253)
Q Consensus      1183 I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~ 1217 (1253)
                      +.+.+++.  ++|+|+||||+++++.||+|++|+.
T Consensus       621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~  653 (659)
T TIGR00954       621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG  653 (659)
T ss_pred             HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence            99999874  8999999999999999999999973

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=6.9e-64  Score=615.70  Aligned_cols=437  Identities=23%  Similarity=0.358  Sum_probs=319.5

Q ss_pred             EEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEE-----------ECCeeCCCCCHH
Q 000851          380 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL-----------LDGHDLKSLQLK  448 (1253)
Q Consensus       380 ~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~-----------~~g~~~~~~~~~  448 (1253)
                      ++++++|+.+ ..+|++++ ++++||+++|+||||||||||+++|+|+++|++|+|.           ++|.++.++..+
T Consensus        77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~  154 (590)
T PRK13409         77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK  154 (590)
T ss_pred             cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence            3489999742 24899999 9999999999999999999999999999999999997           899988654321


Q ss_pred             H--Hhcc----cEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          449 W--LREQ----MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       449 ~--~r~~----i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      .  .+.+    +.|++|.|.+|.+|++||+....   ..+++.++++..++           +........+||||||||
T Consensus       155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l~~l~l-----------~~~~~~~~~~LSgGe~qr  220 (590)
T PRK13409        155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVVERLGL-----------ENILDRDISELSGGELQR  220 (590)
T ss_pred             HhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHH
Confidence            1  1123    44555667778889999997421   12344444444433           333344556899999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.    |       
T Consensus       221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~----g-------  289 (590)
T PRK13409        221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP----G-------  289 (590)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc----c-------
Confidence            99999999999999999999999999999999999998668999999999999876 79999997641    1       


Q ss_pred             cCchHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhH
Q 000851          602 KGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWP  681 (1253)
Q Consensus       602 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (1253)
                         .|...         ..+                                .             ..       +.   
T Consensus       290 ---~~g~~---------~~~--------------------------------~-------------~~-------~~---  302 (590)
T PRK13409        290 ---AYGVV---------SKP--------------------------------K-------------GV-------RV---  302 (590)
T ss_pred             ---cccee---------cch--------------------------------h-------------HH-------HH---
Confidence               11000         000                                0             00       00   


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          682 YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRL  761 (1253)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~  761 (1253)
                                  +                            ...+.                ..                
T Consensus       303 ------------~----------------------------i~~~~----------------~~----------------  310 (590)
T PRK13409        303 ------------G----------------------------INEYL----------------KG----------------  310 (590)
T ss_pred             ------------h----------------------------HHHHH----------------Hh----------------
Confidence                        0                            00000                00                


Q ss_pred             HHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000851          762 SMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIG  841 (1253)
Q Consensus       762 ~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~  841 (1253)
                                   |                                                                  
T Consensus       311 -------------~------------------------------------------------------------------  311 (590)
T PRK13409        311 -------------Y------------------------------------------------------------------  311 (590)
T ss_pred             -------------c------------------------------------------------------------------
Confidence                         0                                                                  


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          842 AFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSL  921 (1253)
Q Consensus       842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  921 (1253)
                              ...                 |.      ++           +        +                     
T Consensus       312 --------~~~-----------------e~------~~-----------~--------~---------------------  320 (590)
T PRK13409        312 --------LPE-----------------EN------MR-----------I--------R---------------------  320 (590)
T ss_pred             --------chh-----------------hh------hh-----------c--------c---------------------
Confidence                    000                 00      00           0        0                     


Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCccccc
Q 000851          922 CSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTE 1001 (1253)
Q Consensus       922 ~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~ 1001 (1253)
                                      .                                      ..+ .+ ...+  +....      .
T Consensus       321 ----------------~--------------------------------------~~~-~~-~~~~--~~~~~------~  336 (590)
T PRK13409        321 ----------------P--------------------------------------EPI-EF-EERP--PRDES------E  336 (590)
T ss_pred             ----------------c--------------------------------------cCc-ce-ecCC--Ccccc------C
Confidence                            0                                      000 00 0000  00000      0


Q ss_pred             ccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHh
Q 000851         1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 1081 (1253)
Q Consensus      1002 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR 1081 (1253)
                      ...-++++|++++|+.    ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++             
T Consensus       337 ~~~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------  399 (590)
T PRK13409        337 RETLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------  399 (590)
T ss_pred             CceEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------
Confidence            1124899999999962    24899999999999999999999999999999999999999999986             


Q ss_pred             cceEEEccCCCc-ccccHHHHhccCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000851         1082 RKIGLVQQEPAL-FSTTIYENIKYGNEDAS-EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 1159 (1253)
Q Consensus      1082 ~~i~~V~Qdp~L-f~gTIreNl~~g~~~~~-d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARAL 1159 (1253)
                      .+++|+||++.+ ++.|++||+.++..... ...+.++++..++.+...           ....+||||||||++|||||
T Consensus       400 ~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL  468 (590)
T PRK13409        400 LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACL  468 (590)
T ss_pred             eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHH
Confidence            159999999875 46799999987532222 233455666666544332           33457999999999999999


Q ss_pred             ccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 000851         1160 LKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225 (1253)
Q Consensus      1160 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt 1225 (1253)
                      +++|+||||||||++||+.+...+.+.|+++.+  ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus       469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~  536 (590)
T PRK13409        469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH  536 (590)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence            999999999999999999999999999998753  7899999999999865 999999965 8777665

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=3.3e-62  Score=551.54  Aligned_cols=462  Identities=26%  Similarity=0.462  Sum_probs=358.9

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCC-CCHHHHhccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS-LQLKWLREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~-~~~~~~r~~i  454 (1253)
                      .++++++++.||+  ..+++||||++++||++||.|+||+|||||+++|.|+|+|++|+|++||++++- -+.+..|..|
T Consensus         4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI   81 (501)
T COG3845           4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI   81 (501)
T ss_pred             eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence            5899999999983  449999999999999999999999999999999999999999999999999984 4566788899


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          455 GLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      |+|+|++.|++. |+.|||.+|.+......+........+.+..+++  |++-...+....||-||||||.|-+||+++|
T Consensus        82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a  159 (501)
T COG3845          82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRGA  159 (501)
T ss_pred             cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence            999999999977 9999999998753110111111111122333333  5555556666789999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcCchHHHHHH
Q 000851          534 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGGEYAALVN  611 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~~  611 (1253)
                      ++||||||||-|-|...+.+.+.++++. .|+|+|+|||++.++.. |||+.||.+|+++..-++  .-           
T Consensus       160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~~-----------  226 (501)
T COG3845         160 RLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--VA-----------  226 (501)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--CC-----------
Confidence            9999999999999999999999999985 58999999999999987 899999999998653210  00           


Q ss_pred             hhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCcchHHHHHHHhhchhHHHHHHHHHHH
Q 000851          612 LQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAI  691 (1253)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (1253)
                                           +              ...   .             .+   -.                 
T Consensus       227 ---------------------~--------------~t~---~-------------el---a~-----------------  235 (501)
T COG3845         227 ---------------------E--------------TTE---E-------------EL---AE-----------------  235 (501)
T ss_pred             ---------------------C--------------CCH---H-------------HH---HH-----------------
Confidence                                 0              000   0             00   00                 


Q ss_pred             HHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000851          692 LAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNE  771 (1253)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~  771 (1253)
                                     +.                                                               
T Consensus       236 ---------------lM---------------------------------------------------------------  237 (501)
T COG3845         236 ---------------LM---------------------------------------------------------------  237 (501)
T ss_pred             ---------------Hh---------------------------------------------------------------
Confidence                           00                                                               


Q ss_pred             CccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000851          772 IGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLK  851 (1253)
Q Consensus       772 ~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~  851 (1253)
                                .|                                                                    
T Consensus       238 ----------vG--------------------------------------------------------------------  239 (501)
T COG3845         238 ----------VG--------------------------------------------------------------------  239 (501)
T ss_pred             ----------cC--------------------------------------------------------------------
Confidence                      00                                                                    


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          852 GFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYA  931 (1253)
Q Consensus       852 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  931 (1253)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (501)
T COG3845         240 --------------------------------------------------------------------------------  239 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccCcEEEEeE
Q 000851          932 SVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNV 1011 (1253)
Q Consensus       932 ~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~V 1011 (1253)
                            .++                                           .......+.       .+.+.-++++|+
T Consensus       240 ------~~v-------------------------------------------~~~~~~~~~-------~pg~~vL~V~~L  263 (501)
T COG3845         240 ------REV-------------------------------------------VLRVVKPPS-------TPGEVVLEVEDL  263 (501)
T ss_pred             ------Ccc-------------------------------------------ccccccCCC-------CCCCeEEEEeee
Confidence                  000                                           000000000       111224899999


Q ss_pred             EEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccC-CCCCHHHHh-cceEEEcc
Q 000851         1012 SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI-RTLNLRSLR-RKIGLVQQ 1089 (1253)
Q Consensus      1012 sf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di-~~i~~~~lR-~~i~~V~Q 1089 (1253)
                      +..-+ + +.+.+++|||+|++||++||.|-.|-|-+.|+.+|.|+.+|.+|+|.++|.|+ ...++..+| ..++|||.
T Consensus       264 ~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPe  341 (501)
T COG3845         264 SVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPE  341 (501)
T ss_pred             EeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCCh
Confidence            98643 2 34679999999999999999999999999999999999999999999999997 677777655 57999999


Q ss_pred             CCC----cccccHHHHhccCCCC---------CCHHHHHHHHHHhcHHHHHHhC---CCCccccccCCCCCCChhHHHHH
Q 000851         1090 EPA----LFSTTIYENIKYGNED---------ASEIELMKATKAANAHGFISRM---PEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1090 dp~----Lf~gTIreNl~~g~~~---------~~d~ei~~al~~a~l~~~I~~l---p~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      |.+    ..+-|+.||+.++.-+         .+..++.+.+     .+.++.+   +.+.+++    ..+||||+.||+
T Consensus       342 dR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~li~~fdVr~~~~~~~----a~~LSGGNqQK~  412 (501)
T COG3845         342 DRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----RELIEEFDVRAPSPDAP----ARSLSGGNQQKL  412 (501)
T ss_pred             hhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHHHHHcCccCCCCCcc----hhhcCCcceehh
Confidence            995    6678999999876432         1122332222     2334332   2233333    357999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      -+||-|.++|++||..+||.+||..+.+.|++.|.+.. +|+.|++||-+|+++.. ||||.||.+|+++....+++
T Consensus       413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence            99999999999999999999999999999999999875 68999999999999865 99999999999998877765

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=4.8e-61  Score=573.37  Aligned_cols=485  Identities=28%  Similarity=0.417  Sum_probs=344.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++|++++|+++  .+|+|+||++.+|+++||||+||||||||+++|+|...|++|+|..++.           -+|+
T Consensus         3 ~i~~~~ls~~~g~~--~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~   69 (530)
T COG0488           3 MITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG   69 (530)
T ss_pred             eEEEeeeEEeeCCc--eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence            48899999999754  4999999999999999999999999999999999999999999998752           2699


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCCCC--HHHHHHHHH------------------H-------hCcHHHHhcCCCCcccc
Q 000851          456 LVSQEPALFAT-SIANNILLGKEDAS--MDRVIEAAK------------------A-------ANAHSFVEGLPDGYQTQ  507 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~~~--~~~~~~~~~------------------~-------~~~~~~i~~l~~g~~t~  507 (1253)
                      |++|++.+.+. ||.+.+..+.....  ..+..++..                  .       +.+...+..|  |+...
T Consensus        70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~  147 (530)
T COG0488          70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE  147 (530)
T ss_pred             EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc
Confidence            99999999865 99999987754221  011111110                  0       1222333333  33332


Q ss_pred             ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEe
Q 000851          508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK  586 (1253)
Q Consensus       508 ~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~  586 (1253)
                       ...-.+||||||-|++|||||+.+||+|||||||++||.++..++.+.|.+. +| |+|+|||+.+++.+ |++|+-++
T Consensus       148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld  224 (530)
T COG0488         148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELD  224 (530)
T ss_pred             -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEec
Confidence             3344679999999999999999999999999999999999999999999865 35 99999999999988 79999999


Q ss_pred             CCEEEEeeCcchhhhcCchHHHHHHhhhcccCCCCCcccCCCCCCCCCCCCCCCCcccchhhhhhhhhhhccccCCCCCc
Q 000851          587 NGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPS  666 (1253)
Q Consensus       587 ~G~i~~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (1253)
                      .|++...         .|.|...+.......                             ..+.   ..           
T Consensus       225 ~g~l~~y---------~Gny~~~~~~r~~~~-----------------------------~~~~---~~-----------  252 (530)
T COG0488         225 RGKLTPY---------KGNYSSYLEQKAERL-----------------------------RQEA---AA-----------  252 (530)
T ss_pred             CCceeEe---------cCCHHHHHHHHHHHH-----------------------------HHHH---HH-----------
Confidence            9977543         233433322110000                             0000   00           


Q ss_pred             chHHHHHHHhhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          667 PSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHY  746 (1253)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  746 (1253)
                            +.  +                                                                     
T Consensus       253 ------~~--~---------------------------------------------------------------------  255 (530)
T COG0488         253 ------YE--K---------------------------------------------------------------------  255 (530)
T ss_pred             ------HH--H---------------------------------------------------------------------
Confidence                  00  0                                                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000851          747 FYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW  826 (1253)
Q Consensus       747 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  826 (1253)
                                   +++                             .+...                              
T Consensus       256 -------------~~~-----------------------------~~~~~------------------------------  263 (530)
T COG0488         256 -------------QQK-----------------------------ELAKE------------------------------  263 (530)
T ss_pred             -------------HHH-----------------------------HHHHH------------------------------
Confidence                         000                             00000                              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHH
Q 000851          827 RLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRG  906 (1253)
Q Consensus       827 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~  906 (1253)
                                                                                ..|.+++...-....+...   
T Consensus       264 ----------------------------------------------------------~~~i~r~~~~~~~~k~a~s---  282 (530)
T COG0488         264 ----------------------------------------------------------QEWIRRGKAAASKAKKAKS---  282 (530)
T ss_pred             ----------------------------------------------------------HHHHHHHHhccchHHHHHH---
Confidence                                                                      0000000000000000000   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Q 000851          907 HISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGI-LYR  985 (1253)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~-~~~  985 (1253)
                                                                                       .....+++... ...
T Consensus       283 -----------------------------------------------------------------r~k~l~k~~~~~~~~  297 (530)
T COG0488         283 -----------------------------------------------------------------RIKRLEKLEARLAEE  297 (530)
T ss_pred             -----------------------------------------------------------------HHHHHHHHHhhhhhc
Confidence                                                                             00111111110 000


Q ss_pred             cccCCCCCCC--Cccc---ccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 000851          986 KTAIQPDDPA--SKEV---TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060 (1253)
Q Consensus       986 ~~~~~~~~~~--~~~~---~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p 1060 (1253)
                      .+... ..+.  ..++   ...+.-++++|++++|+..  +++++++||.|.+|++||||||||+|||||+++|.|-..|
T Consensus       298 ~~~~~-~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~  374 (530)
T COG0488         298 RPVEE-GKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP  374 (530)
T ss_pred             ccccc-cccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc
Confidence            00000 0000  0000   1123359999999999732  5799999999999999999999999999999999999999


Q ss_pred             CccEEEECCccCCCCCHHHHhcceEEEccCC-Ccc-cccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc
Q 000851         1061 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP-ALF-STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHV 1138 (1253)
Q Consensus      1061 ~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp-~Lf-~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~v 1138 (1253)
                      .+|+|.+.-. +          ++||.+|+. .++ +.|+.|++.-..|+..+.++...|.+.++..-      ...++|
T Consensus       375 ~~G~v~~g~~-v----------~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~------~~~~~v  437 (530)
T COG0488         375 LSGTVKVGET-V----------KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE------DQEKPV  437 (530)
T ss_pred             CCceEEeCCc-e----------EEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH------HHhCch
Confidence            9999998542 2          599999998 444 34899999887766667788888877766432      122334


Q ss_pred             cCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeC
Q 000851         1139 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQ 1217 (1253)
Q Consensus      1139 ge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~ 1217 (1253)
                          ..||||||-|+.||+.++.+|++|||||||++||.+|.+.+.++|.++  .-|||+|||+...+.. |++|+++++
T Consensus       438 ----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~  511 (530)
T COG0488         438 ----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED  511 (530)
T ss_pred             ----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC
Confidence                469999999999999999999999999999999999999999999986  3499999999999977 999999999


Q ss_pred             CEEEEe-cChhHHhhc
Q 000851         1218 GKVAEI-GSHEQLLRK 1232 (1253)
Q Consensus      1218 G~ive~-Gt~~eLl~~ 1232 (1253)
                       ++.++ |++++..+.
T Consensus       512 -~~~~~~g~y~~y~~~  526 (530)
T COG0488         512 -KVEEFEGGYEDYLEQ  526 (530)
T ss_pred             -ceeEcCCCHHHHHHh
Confidence             88887 888888763

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=6.5e-53  Score=472.10  Aligned_cols=237  Identities=28%  Similarity=0.500  Sum_probs=223.4

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcc
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~ 1083 (1253)
                      |.|+|+||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|++||.++..++...+|++
T Consensus         1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~   78 (275)
T cd03289           1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA   78 (275)
T ss_pred             CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence            469999999999732 3469999999999999999999999999999999999998 78999999999999999999999


Q ss_pred             eEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000851         1084 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p 1163 (1253)
                      |+||||+|.+|++|+++|+++.. ..++++++++++.+++.+++.++|++||+.++++|.+||||||||+||||||+++|
T Consensus        79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p  157 (275)
T cd03289          79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA  157 (275)
T ss_pred             EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999998643 35678999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHHHH
Q 000851         1164 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243 (1253)
Q Consensus      1164 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~~ 1243 (1253)
                      +||||||||++||+.+++.+++.|++.++++|+|+||||++++..||||+||++|++++.|+|++|++ ..+.|++++..
T Consensus       158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~~~~~~  236 (275)
T cd03289         158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFKQAISP  236 (275)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHHHHHhh
Confidence            99999999999999999999999998888999999999999999999999999999999999999999 56899999865


Q ss_pred             h
Q 000851         1244 Q 1244 (1253)
Q Consensus      1244 ~ 1244 (1253)
                      .
T Consensus       237 ~  237 (275)
T cd03289         237 S  237 (275)
T ss_pred             c
Confidence            4

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-51  Score=418.39  Aligned_cols=215  Identities=32%  Similarity=0.542  Sum_probs=187.5

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCC-CCCHHHHhccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK-SLQLKWLREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~i  454 (1253)
                      -|+++||+++|++.  .||+|||++|++||+++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|+++
T Consensus         2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v   79 (240)
T COG1126           2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV   79 (240)
T ss_pred             eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence            38999999999853  4999999999999999999999999999999999999999999999998874 33788999999


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCC---CCHHH----HHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          455 GLVSQEPALFAT-SIANNILLGKED---ASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~---~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      |+|+|+..||+- |+.||+.++.-.   .+.++    -.+.++++++.+-.+..           +.+||||||||+|||
T Consensus        80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----------P~qLSGGQqQRVAIA  148 (240)
T COG1126          80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA  148 (240)
T ss_pred             CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhC-----------ccccCcHHHHHHHHH
Confidence            999999999965 999999987321   12222    23344455555554444           459999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      |||+.+|+++++|||||||||+....+.+.++++. .|.|.|+|||.+.+.+. ||||+.||+|+|+++|+++++..++
T Consensus       149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p  227 (240)
T COG1126         149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP  227 (240)
T ss_pred             HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence            99999999999999999999999999999999986 57899999999999988 6999999999999999999998764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-50  Score=412.05  Aligned_cols=217  Identities=35%  Similarity=0.565  Sum_probs=193.7

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCC-CCCHHHHhcc
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR-TLNLRSLRRK 1083 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~-~i~~~~lR~~ 1083 (1253)
                      -|+++||+.+|.   +..||+||||+|++||.++|+||||||||||+++|.++.+|++|+|.+||.++. ..+...+|++
T Consensus         2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~   78 (240)
T COG1126           2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK   78 (240)
T ss_pred             eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence            389999999996   456999999999999999999999999999999999999999999999997763 3378899999


Q ss_pred             eEEEccCCCccc-ccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1084 IGLVQQEPALFS-TTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~-gTIreNl~~g~~---~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      +|+|+|...||+ -|+.||+.++.-   ..+    .+.-.+.|+++++.+.....|           .+||||||||+||
T Consensus        79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI  147 (240)
T COG1126          79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI  147 (240)
T ss_pred             cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence            999999999998 599999988631   122    223445677888888777776           5799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhcc
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1233 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~ 1233 (1253)
                      ||||.-+|+++|+|||||||||+.-..|.+.++++. +|.|.|+|||.+...++ ||||+.||+|+|+|.|+|+++..++
T Consensus       148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p  227 (240)
T COG1126         148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP  227 (240)
T ss_pred             HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence            999999999999999999999999999999999976 58999999999999987 9999999999999999999999875


Q ss_pred             cc
Q 000851         1234 NG 1235 (1253)
Q Consensus      1234 ~g 1235 (1253)
                      +.
T Consensus       228 ~~  229 (240)
T COG1126         228 KS  229 (240)
T ss_pred             CC
Confidence            54

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=3e-49  Score=442.59  Aligned_cols=237  Identities=27%  Similarity=0.477  Sum_probs=220.6

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      |.|+++|++|+|++...++|+|+||+|++||+++|+|+||||||||+++|.|+++ ++|+|++||.++..++...+|+.|
T Consensus         1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i   79 (275)
T cd03289           1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF   79 (275)
T ss_pred             CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence            4699999999997434459999999999999999999999999999999999997 799999999999999999999999


Q ss_pred             EEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000851          455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK  534 (1253)
Q Consensus       455 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~  534 (1253)
                      +||||+|.+|++|+++|+.... ..++++++++++.+++.+++.++|++++|.++++|.+||||||||++||||++++|+
T Consensus        80 ~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~  158 (275)
T cd03289          80 GVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK  158 (275)
T ss_pred             EEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999996432 246788999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCchHHHHHHhh
Q 000851          535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ  613 (1253)
Q Consensus       535 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~~~~  613 (1253)
                      ||||||||++||+.+.+.+++.|++..+++|+|+||||++++..||+|++|++|++++.|++++|++.++.|++++...
T Consensus       159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~  237 (275)
T cd03289         159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS  237 (275)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence            9999999999999999999999998878899999999999999999999999999999999999999877777777543

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-49  Score=423.23  Aligned_cols=216  Identities=35%  Similarity=0.560  Sum_probs=189.9

Q ss_pred             EEEEEEEEECCCC---CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH---HHH
Q 000851          377 IEFSEVCFAYPSR---PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWL  450 (1253)
Q Consensus       377 i~~~~v~f~y~~~---~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~  450 (1253)
                      |++++|++.|+..   ...+|+||||+|++||+.+|||+||+|||||++++.++-.|++|+|.+||+|+..++.   ..+
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~   81 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL   81 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence            7899999999863   1239999999999999999999999999999999999999999999999999987764   456


Q ss_pred             hcccEEEeccCccCc-ccHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 000851          451 REQMGLVSQEPALFA-TSIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI  523 (1253)
Q Consensus       451 r~~i~~v~Q~~~lf~-~ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qri  523 (1253)
                      |++||++||++.|++ .||++|++|..+-+  +    .+++.+.++.+++.|...+.           +.+|||||||||
T Consensus        82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y-----------P~qLSGGQKQRV  150 (339)
T COG1135          82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY-----------PAQLSGGQKQRV  150 (339)
T ss_pred             HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC-----------chhcCcchhhHH
Confidence            789999999999997 69999999975432  2    23455566666665555444           469999999999


Q ss_pred             HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       524 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      +|||||+.+|+||+.|||||||||+|.+.|.+.|+++.  .|-|+++|||.++.++. |||+.||++|+++|+|+-.++.
T Consensus       151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF  230 (339)
T COG1135         151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF  230 (339)
T ss_pred             HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence            99999999999999999999999999999999999874  37899999999999988 8999999999999999999988


Q ss_pred             hcC
Q 000851          601 SKG  603 (1253)
Q Consensus       601 ~~~  603 (1253)
                      .++
T Consensus       231 ~~P  233 (339)
T COG1135         231 ANP  233 (339)
T ss_pred             cCc
Confidence            764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-49  Score=410.57  Aligned_cols=214  Identities=33%  Similarity=0.576  Sum_probs=191.6

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+|+|||+.|.+  ..+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++...||++|||
T Consensus         2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY   79 (309)
T COG1125           2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY   79 (309)
T ss_pred             ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence            789999999974  349999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCccCcc-cHHHHHhcCCCC--CC----HHHHHHHHHHhCcH--HHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          457 VSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAH--SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~--~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      |-|..-||+. ||.|||++-..-  .+    .+++.+.+++.+++  +|..+.|           .+|||||+|||.+||
T Consensus        80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R  148 (309)
T COG1125          80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR  148 (309)
T ss_pred             hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence            9999999965 999999874211  12    24455666666664  3666665           489999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~-~~~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      ||+.+|+|+++|||++||||.++..+|+.+.++.+  ++|+|+|||++++. +-+|||.+|++|+|++.++++++++++
T Consensus       149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P  227 (309)
T COG1125         149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP  227 (309)
T ss_pred             HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence            99999999999999999999999999999998864  79999999999876 559999999999999999999999874

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4e-49  Score=421.04  Aligned_cols=226  Identities=37%  Similarity=0.613  Sum_probs=195.8

Q ss_pred             EEEEeEEEECCCC--CCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC---HHHH
Q 000851         1006 IELRNVSFKYPVR--PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSL 1080 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~--~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~---~~~l 1080 (1253)
                      |+++|||+.|+..  ...++|+||||+|++||+.||+|+||+|||||++++.++-+|++|+|.+||.|+..++   +..+
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~   81 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL   81 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence            8999999999852  1246899999999999999999999999999999999999999999999999888776   4567


Q ss_pred             hcceEEEccCCCccc-ccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1081 RRKIGLVQQEPALFS-TTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1081 R~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      |++||+|+|++.|++ .|+.+|++|...  ..+.    +.+.+.|+.+|+.|+..+-|           .+||||||||+
T Consensus        82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV  150 (339)
T COG1135          82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV  150 (339)
T ss_pred             HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence            889999999999997 799999998642  1223    34556677777766655544           78999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      +|||||..+|+|||.|||||||||+|.+.|.+.|++..+  |-|+++|||.++-+++ |||+.||++|+++|.|+-.++.
T Consensus       151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF  230 (339)
T COG1135         151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF  230 (339)
T ss_pred             HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence            999999999999999999999999999999999998653  8899999999999987 9999999999999999999999


Q ss_pred             hcccch-HHHHHH
Q 000851         1231 RKENGI-YKQLIR 1242 (1253)
Q Consensus      1231 ~~~~g~-y~~L~~ 1242 (1253)
                      .+++.. -++++.
T Consensus       231 ~~Pk~~~t~~fi~  243 (339)
T COG1135         231 ANPKHAITQEFIG  243 (339)
T ss_pred             cCcchHHHHHHHH
Confidence            876543 334443

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=100.00  E-value=6.6e-48  Score=435.73  Aligned_cols=198  Identities=30%  Similarity=0.429  Sum_probs=166.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      -|.++||+|+|++.+  .++++++|-|.++++||+|||||+|||||++++.|...|+.|.|.-.-..           ++
T Consensus       389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~  455 (614)
T KOG0927|consen  389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL  455 (614)
T ss_pred             eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence            489999999998543  68999999999999999999999999999999999999999988754322           34


Q ss_pred             EEEccCC---CcccccHHHHhccCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000851         1085 GLVQQEP---ALFSTTIYENIKYGNED-ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160 (1253)
Q Consensus      1085 ~~V~Qdp---~Lf~gTIreNl~~g~~~-~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALl 1160 (1253)
                      ++..|.-   ..++.|.-|++.+-.++ ...+++...+.+.|+..-.+..|      +    .+||+|||.||++||.++
T Consensus       456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p------~----~~LS~Gqr~rVlFa~l~~  525 (614)
T KOG0927|consen  456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP------M----SQLSDGQRRRVLFARLAV  525 (614)
T ss_pred             hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc------h----hhcccccchhHHHHHHHh
Confidence            4455543   45678888998876664 66778888999998864433333      3    479999999999999999


Q ss_pred             cCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEe-cChh
Q 000851         1161 KNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI-GSHE 1227 (1253)
Q Consensus      1161 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~-Gt~~ 1227 (1253)
                      +.|.||||||||++||.+|-..+.++|.++.  .+||+|||+...|.. +++|++.+||.+... |...
T Consensus       526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~  592 (614)
T KOG0927|consen  526 KQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE  592 (614)
T ss_pred             cCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence            9999999999999999999999999998863  489999999999976 999999999998753 4443

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-48  Score=444.65  Aligned_cols=227  Identities=31%  Similarity=0.512  Sum_probs=199.9

Q ss_pred             ccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCC-
Q 000851         1000 TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIR- 1073 (1253)
Q Consensus      1000 ~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~- 1073 (1253)
                      ++..+.|+|+|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++     |++|+|.+||+++. 
T Consensus        75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~  153 (329)
T PRK14257         75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS  153 (329)
T ss_pred             CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence            4556789999999999742 3469999999999999999999999999999999999997     57999999999997 


Q ss_pred             -CCCHHHHhcceEEEccCCCcccccHHHHhccCCC--CCCHHHH-----HHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 000851         1074 -TLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE--DASEIEL-----MKATKAANAHGFISRMPEGYQSHVGDRGVQL 1145 (1253)
Q Consensus      1074 -~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~~d~ei-----~~al~~a~l~~~I~~lp~gldt~vge~G~~L 1145 (1253)
                       .++...+|++++||||+|.+|++|++|||.++..  ..++++.     .++++.++       +++++++.++++|.+|
T Consensus       154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~L  226 (329)
T PRK14257        154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNAL  226 (329)
T ss_pred             cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccC
Confidence             4566788999999999999999999999997532  2344444     33444444       3456678899999999


Q ss_pred             ChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1146 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1146 SgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      |||||||+||||||+++|+|||||||||+||+++.+.+++.|++..+++|+|+|||+++++.. ||||+||++|+|+|.|
T Consensus       227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g  306 (329)
T PRK14257        227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG  306 (329)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999998889999999999999987 9999999999999999


Q ss_pred             ChhHHhhccc
Q 000851         1225 SHEQLLRKEN 1234 (1253)
Q Consensus      1225 t~~eLl~~~~ 1234 (1253)
                      +|++++..+.
T Consensus       307 ~~~~l~~~~~  316 (329)
T PRK14257        307 ETKTIFIHPK  316 (329)
T ss_pred             CHHHHhcCCC
Confidence            9999987544

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.7e-49  Score=395.44  Aligned_cols=219  Identities=30%  Similarity=0.491  Sum_probs=197.9

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCC-----cEEEECCeeCCC--CCH
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS-----GKILLDGHDLKS--LQL  447 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-----G~i~~~g~~~~~--~~~  447 (1253)
                      ..++++|+++.|++  +.+|+|||++|++++++|++|||||||||+++.+.|+.+..+     |+|.++|+||.+  ++.
T Consensus         6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~   83 (253)
T COG1117           6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV   83 (253)
T ss_pred             ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence            35899999999984  349999999999999999999999999999999999999875     999999999975  578


Q ss_pred             HHHhcccEEEeccCccCcccHHHHHhcCCCCC------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          448 KWLREQMGLVSQEPALFATSIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      -.+|++||+|+|.|.-|+.||+||++||..-.      -++.++++++.|.+++.+..       .+.+.+..|||||+|
T Consensus        84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ  156 (253)
T COG1117          84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ  156 (253)
T ss_pred             HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence            99999999999999999999999999984211      23557889999999887754       244667789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++|||||.-+|+|||||||||||||.+..+|.+.+.+++++-|+|+|||.+....+ +|+...+.+|+++|.|+.+++.
T Consensus       157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF  236 (253)
T COG1117         157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF  236 (253)
T ss_pred             HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence            999999999999999999999999999999999999999999999999999998877 5999999999999999998887


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      .+
T Consensus       237 ~~  238 (253)
T COG1117         237 TN  238 (253)
T ss_pred             cC
Confidence            65

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-48  Score=394.36  Aligned_cols=220  Identities=33%  Similarity=0.560  Sum_probs=200.2

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCc-----cEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS-----GTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~-----G~I~idG~di~~--i~~ 1077 (1253)
                      .++++|+++.|.   +..+|+|||+.|++++.+|++|||||||||++++|.|+.+..+     |+|.+||.||.+  ++.
T Consensus         7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~   83 (253)
T COG1117           7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV   83 (253)
T ss_pred             eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence            589999999996   4569999999999999999999999999999999999999875     999999999976  578


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~------~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      -.+|+++|.|+|.|.-|+.||+||+.||..      ..-|+-++++++.|.+||-+..       .+.+.+..|||||+|
T Consensus        84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ  156 (253)
T COG1117          84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ  156 (253)
T ss_pred             HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence            899999999999999999999999999832      1225668899999999998754       345667889999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      |+||||||.-+|+|||||||||+|||.+...|.+.|.++.++-|+|+|||.+.-..+ +|+...+-.|+++|+|.-+++.
T Consensus       157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF  236 (253)
T COG1117         157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF  236 (253)
T ss_pred             HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence            999999999999999999999999999999999999999989999999999998755 9999999999999999999998


Q ss_pred             hccc
Q 000851         1231 RKEN 1234 (1253)
Q Consensus      1231 ~~~~ 1234 (1253)
                      .++.
T Consensus       237 ~~P~  240 (253)
T COG1117         237 TNPK  240 (253)
T ss_pred             cCcc
Confidence            7553

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-48  Score=399.67  Aligned_cols=221  Identities=35%  Similarity=0.577  Sum_probs=196.5

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+|+|||++|.   +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.++++++.-.||++||
T Consensus         2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG   78 (309)
T COG1125           2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG   78 (309)
T ss_pred             ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence            79999999996   456999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCccc-ccHHHHhccCC--CCCC----HHHHHHHHHHhcHH--HHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1086 LVQQEPALFS-TTIYENIKYGN--EDAS----EIELMKATKAANAH--GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~--~~~~----d~ei~~al~~a~l~--~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      ||-|..-||+ .||.|||..-.  ...+    ++.+.+.++.+++.  +|..+.|           ..|||||+||+.+|
T Consensus        79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~  147 (309)
T COG1125          79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA  147 (309)
T ss_pred             hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence            9999999997 59999997631  1223    34455667777774  4666665           67999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhh-hccCEEEEEeCCEEEEecChhHHhhcc
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKE 1233 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti-~~~D~I~Vl~~G~ive~Gt~~eLl~~~ 1233 (1253)
                      |||..+|+|||||||.+||||.++..+|+-+.+..+  ++|+|+|||++++. +-+|||+||++|+|+.+|+|+++++++
T Consensus       148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P  227 (309)
T COG1125         148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP  227 (309)
T ss_pred             HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence            999999999999999999999999999999988654  89999999999986 559999999999999999999999987


Q ss_pred             cchHHHH
Q 000851         1234 NGIYKQL 1240 (1253)
Q Consensus      1234 ~g~y~~L 1240 (1253)
                      ...|-+-
T Consensus       228 an~FV~~  234 (309)
T COG1125         228 ANDFVED  234 (309)
T ss_pred             cHHHHHH
Confidence            6666443

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-44  Score=389.26  Aligned_cols=465  Identities=20%  Similarity=0.240  Sum_probs=358.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          107 VALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFV  186 (1253)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~  186 (1253)
                      +..+.+.+........++.+.+++|.++.++++.-|+..+++ .+++.++.++++|+..|. +-...++.+.+..+.+++
T Consensus        60 lf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~  137 (546)
T COG4615          60 LFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLG  137 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hcccchhhhhccccccee-ehHhhhHHHHHHHHHHHH
Confidence            334455556666778899999999999999999999999998 699999999999999999 445567889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH--HHHHHHHHH
Q 000851          187 GFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA--KAIESYSHS  264 (1253)
Q Consensus       187 ~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~--~~~~~~~~~  264 (1253)
                      +.+.+.++|+++.++..+++.+..+...+...+..+.....++..+++.+..+..++|-|..+....-.  ...+.|...
T Consensus       138 s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~  217 (546)
T COG4615         138 SAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD  217 (546)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcc
Confidence            999999999999999988888888888888889999999999999999999999999999998875322  223334433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          265 LKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKA  344 (1253)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  344 (1253)
                      .+++.+..............+.+++.+..+.+++|.....   +.-+...+.++.+.++++-.|+.+....++.+.+|.+
T Consensus       218 a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~Aqv  294 (546)
T COG4615         218 AQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQV  294 (546)
T ss_pred             hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Confidence            3333332222222221223334444444444555544222   3333334444445556666789999999999999999


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHH
Q 000851          345 AAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMV  424 (1253)
Q Consensus       345 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll  424 (1253)
                      |++||.++-..++..+ -  ..+...|.. ..|+++||.|+|+... .-+..||++|++||++-|+|.|||||||++++|
T Consensus       295 A~~kiakle~~~~~a~-~--~~~q~~p~~-~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LL  369 (546)
T COG4615         295 AFNKIAKLELAPYKAD-F--PRPQAFPDW-KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLL  369 (546)
T ss_pred             HHHHHHHhhcCCcccc-C--CCCCcCCcc-cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHH
Confidence            9999998754322211 1  111222232 4699999999997532 357889999999999999999999999999999


Q ss_pred             HccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHhcCCCC
Q 000851          425 QRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED-ASMDRVIEAAKAANAHSFVEGLPDG  503 (1253)
Q Consensus       425 ~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g  503 (1253)
                      .|+|.|++|+|++||.++..-+++++|+-++-|+-|.+||+.++      |.+. ++++.+..-++.-.+..-. ++-+|
T Consensus       370 tGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-sl~d~  442 (546)
T COG4615         370 TGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-SLNDG  442 (546)
T ss_pred             hcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-cccCC
Confidence            99999999999999999999999999999999999999998754      4333 5666665555444332222 22222


Q ss_pred             ccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhhcCE
Q 000851          504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDT  581 (1253)
Q Consensus       504 ~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~  581 (1253)
                      --+     ...||-|||.|+|+--|++-+.||++|||=-+--||.-++.+.+.+....  .|||++.|||+-.....|||
T Consensus       443 ~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADr  517 (546)
T COG4615         443 RFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADR  517 (546)
T ss_pred             ccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHH
Confidence            111     24699999999999999999999999999999999999998888776543  59999999999999999999


Q ss_pred             EEEEeCCEEEEe
Q 000851          582 IMVLKNGQVVES  593 (1253)
Q Consensus       582 i~vl~~G~i~~~  593 (1253)
                      ++.|++|+++|.
T Consensus       518 ll~~~~G~~~e~  529 (546)
T COG4615         518 LLEMRNGQLSEL  529 (546)
T ss_pred             HHHHhcCceeec
Confidence            999999999985

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=1.5e-46  Score=416.49  Aligned_cols=235  Identities=47%  Similarity=0.798  Sum_probs=217.5

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (237)
T cd03252           1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG   79 (237)
T ss_pred             CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence            4789999999632 346999999999999999999999999999999999999999999999999998888888899999


Q ss_pred             EEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000851         1086 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165 (1253)
Q Consensus      1086 ~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1165 (1253)
                      |+||++.+|+.|++||+.++.+..+.+++.++++..++.+++..+|.|+++..+..+.+||||||||++|||||+++|++
T Consensus        80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (237)
T cd03252          80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI  159 (237)
T ss_pred             EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence            99999999999999999986554556677788888899999999999999999999999999999999999999999999


Q ss_pred             EEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHHH
Q 000851         1166 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1242 (1253)
Q Consensus      1166 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~ 1242 (1253)
                      |||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++++ ..+.|+.+++
T Consensus       160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~~~  235 (237)
T cd03252         160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQ  235 (237)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh-ccChHHHHHh
Confidence            999999999999999999999999877899999999999998899999999999999999999998 4788888774

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=2.9e-46  Score=418.40  Aligned_cols=241  Identities=32%  Similarity=0.573  Sum_probs=223.1

Q ss_pred             ccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHh
Q 000851         1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 1081 (1253)
Q Consensus      1002 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR 1081 (1253)
                      ..+.|+++|++++|+.. ..++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus        16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   94 (257)
T cd03288          16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR   94 (257)
T ss_pred             CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence            45789999999999742 24699999999999999999999999999999999999999999999999999998888999


Q ss_pred             cceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000851         1082 RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 1161 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr 1161 (1253)
                      ++++|++|+|.+|++|++||+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||++
T Consensus        95 ~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  173 (257)
T cd03288          95 SRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR  173 (257)
T ss_pred             hhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999998743 234567888899999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHH
Q 000851         1162 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1162 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~ 1241 (1253)
                      +|++|||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|++++
T Consensus       174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  253 (257)
T cd03288         174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV  253 (257)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence            99999999999999999999999999987778999999999999988999999999999999999999987678899888


Q ss_pred             HHh
Q 000851         1242 RLQ 1244 (1253)
Q Consensus      1242 ~~~ 1244 (1253)
                      ..+
T Consensus       254 ~~~  256 (257)
T cd03288         254 RTD  256 (257)
T ss_pred             hcc
Confidence            644

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=4e-46  Score=413.14  Aligned_cols=235  Identities=50%  Similarity=0.834  Sum_probs=217.2

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++|+.++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV   80 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence            57899999997433459999999999999999999999999999999999999999999999999987787788889999


Q ss_pred             EeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 000851          457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL  536 (1253)
Q Consensus       457 v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~il  536 (1253)
                      ++|++++|+.|+.||+.++.+....+++.++++..++.+++..+|.|+++..+..+.+||||||||++||||++.+|++|
T Consensus        81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  160 (237)
T cd03252          81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL  160 (237)
T ss_pred             EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence            99999999999999999876544566777788888999999999999999999999999999999999999999999999


Q ss_pred             EEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCchHHHHHH
Q 000851          537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN  611 (1253)
Q Consensus       537 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~~  611 (1253)
                      ||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++++++++.+.|+.++.
T Consensus       161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~  235 (237)
T cd03252         161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ  235 (237)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence            999999999999999999999998778999999999999988999999999999999999999988888887654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-46  Score=429.52  Aligned_cols=223  Identities=31%  Similarity=0.511  Sum_probs=196.1

Q ss_pred             CCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCC--CC
Q 000851          374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQ  446 (1253)
Q Consensus       374 ~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~  446 (1253)
                      .+.|+++|++|+|++...++|+|+||+|++||++||+||||||||||+++|+|+++     |++|+|.+||+++..  .+
T Consensus        78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~  157 (329)
T PRK14257         78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS  157 (329)
T ss_pred             CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            46799999999997444459999999999999999999999999999999999996     579999999999973  45


Q ss_pred             HHHHhcccEEEeccCccCcccHHHHHhcCCCC--CCHHH-----HHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHH
Q 000851          447 LKWLREQMGLVSQEPALFATSIANNILLGKED--ASMDR-----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ  519 (1253)
Q Consensus       447 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~~~~~-----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq  519 (1253)
                      ...+|+.++||||+|++|++|++|||.|+...  .++++     +.++++.++       +++++++.++++|.+|||||
T Consensus       158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSgGq  230 (329)
T PRK14257        158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSGGQ  230 (329)
T ss_pred             hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCHHH
Confidence            56789999999999999999999999987432  22232     344445544       34456788999999999999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcch
Q 000851          520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD  598 (1253)
Q Consensus       520 ~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~  598 (1253)
                      |||++||||++++|+|||||||||+||+++.+.+++.|+++.+++|+|+|||+++++.. ||+|+||++|+|++.|++++
T Consensus       231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~  310 (329)
T PRK14257        231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT  310 (329)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999999888999999999999987 99999999999999999999


Q ss_pred             hhhcC
Q 000851          599 LISKG  603 (1253)
Q Consensus       599 l~~~~  603 (1253)
                      +....
T Consensus       311 l~~~~  315 (329)
T PRK14257        311 IFIHP  315 (329)
T ss_pred             HhcCC
Confidence            97653

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.6e-45  Score=451.46  Aligned_cols=199  Identities=27%  Similarity=0.433  Sum_probs=169.0

Q ss_pred             CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC--CccEEEECCccCCCCCHHHHhcceEEEccCC-Ccccc
Q 000851         1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP--ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP-ALFST 1096 (1253)
Q Consensus      1020 ~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p--~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp-~Lf~g 1096 (1253)
                      .+..|+|||=-++||..+|++|+||||||||+++|.+=-.-  .+|+|+|||.+..+   +..++.+|||.|++ |+=.-
T Consensus       803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~  879 (1391)
T KOG0065|consen  803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL  879 (1391)
T ss_pred             ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence            34689999999999999999999999999999999987542  47999999999765   78999999999977 46567


Q ss_pred             cHHHHhccCC-----CCCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC-CEE
Q 000851         1097 TIYENIKYGN-----EDASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP-SIL 1166 (1253)
Q Consensus      1097 TIreNl~~g~-----~~~~d~e----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p-~IL 1166 (1253)
                      ||||-|.+..     .+.+++|    +.++.+..++.++-       |..||..|..||..||.|+.||=-|+.|| .||
T Consensus       880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il  952 (1391)
T KOG0065|consen  880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSIL  952 (1391)
T ss_pred             chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence            9999998752     2344433    45556555555443       45789989999999999999999999999 999


Q ss_pred             EEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhh--hccCEEEEEe-CCEEEEecChhH
Q 000851         1167 LLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTI--RNADKIAVLQ-QGKVAEIGSHEQ 1228 (1253)
Q Consensus      1167 lLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti--~~~D~I~Vl~-~G~ive~Gt~~e 1228 (1253)
                      +||||||+||+++...|++.+++.. .|+||++.=|.++..  +.+|+++.|+ .|+.|-.|+..+
T Consensus       953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence            9999999999999999999999975 699999999999873  7799999997 579999987643

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=7.2e-46  Score=383.12  Aligned_cols=220  Identities=30%  Similarity=0.539  Sum_probs=191.4

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH---HHh
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLR  451 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r  451 (1253)
                      ..|++++|+|+|+++  .|++|+||+|++||+++|+||||||||||+++|.|+..|++|+|.++|+|+..++.+   .+|
T Consensus         7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            369999999999754  499999999999999999999999999999999999999999999999999988754   568


Q ss_pred             cccEEEeccCccCcc-cHHHHHhcCCCCC---CHHHHH----HHHHHhCcHHH-HhcCCCCccccccCCCCCCChHHHHH
Q 000851          452 EQMGLVSQEPALFAT-SIANNILLGKEDA---SMDRVI----EAAKAANAHSF-VEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       452 ~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~---~~~~~~----~~~~~~~~~~~-i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      +++|+++|+..||+. ||+||+.|...+.   +++.+.    ..++.+++... .+.+|           .+||||++.|
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR  153 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR  153 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence            899999999999987 9999999964332   333333    33455555444 33444           6899999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchh
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      +|||||+..||+|+++|||||+|||.+...+.+.|+++++  +.|+|+|||+++++.. ||||+++.||+|+.+|+.+|+
T Consensus       154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el  233 (263)
T COG1127         154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL  233 (263)
T ss_pred             HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999998865  7899999999999877 699999999999999999999


Q ss_pred             hhcCchHH
Q 000851          600 ISKGGEYA  607 (1253)
Q Consensus       600 ~~~~~~y~  607 (1253)
                      .+.+..|-
T Consensus       234 ~~sd~P~v  241 (263)
T COG1127         234 LASDDPWV  241 (263)
T ss_pred             HhCCCHHH
Confidence            98765543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-45  Score=412.87  Aligned_cols=213  Identities=36%  Similarity=0.585  Sum_probs=195.0

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++||+++|++..  +|+|+||+|+.||+++|+|||||||||++++|+|+.+|++|+|.+||.++++++++.  +.||
T Consensus         3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia   78 (338)
T COG3839           3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA   78 (338)
T ss_pred             EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence            589999999997533  999999999999999999999999999999999999999999999999999998876  6899


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          456 LVSQEPALFAT-SIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      +|+|+..||+. ||+|||+||....      -++++.++++..++.+.+++.|.           +||||||||||||||
T Consensus        79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA  147 (338)
T COG3839          79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA  147 (338)
T ss_pred             EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence            99999999976 9999999986533      25678889999988888888775           899999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      |+++|++++||||+|+||++.+..+...|+++.+  +.|+|+|||+..++.. +|||+||++|+|.+.|++.|+..++
T Consensus       148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P  225 (338)
T COG3839         148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP  225 (338)
T ss_pred             HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence            9999999999999999999999999999988754  6899999999988765 8999999999999999999998764

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.3e-45  Score=397.33  Aligned_cols=214  Identities=34%  Similarity=0.576  Sum_probs=192.3

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .++++|++|+|+++  ++|+|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|++||+++.+++.+++.+++|
T Consensus         2 ~L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia   79 (258)
T COG1120           2 MLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA   79 (258)
T ss_pred             eeEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence            37899999999853  4999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCc-cCcccHHHHHhcCCCCC----------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          456 LVSQEPA-LFATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       456 ~v~Q~~~-lf~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      ||||++. -|.-||+|-+.+|+-..          +.+.+.++++..++.++..+.           -.+||||||||+.
T Consensus        80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~  148 (258)
T COG1120          80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL  148 (258)
T ss_pred             EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence            9999975 45669999999996421          123577888888887776543           3479999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEEEeeCcchhhh
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~-~~~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |||||+++|+||+||||||+||..++-.+++.++++.  +|+|+|+|.|+++.. +.||++++|++|+++.+|+++|.+.
T Consensus       149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT  228 (258)
T COG1120         149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT  228 (258)
T ss_pred             HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence            9999999999999999999999999999999999986  479999999999875 5699999999999999999999886


Q ss_pred             c
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      .
T Consensus       229 ~  229 (258)
T COG1120         229 E  229 (258)
T ss_pred             H
Confidence            5

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=4.1e-45  Score=404.99  Aligned_cols=234  Identities=56%  Similarity=0.890  Sum_probs=217.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+.  ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus         1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~   78 (236)
T cd03253           1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG   78 (236)
T ss_pred             CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            478999999963  245999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             EEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000851         1086 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165 (1253)
Q Consensus      1086 ~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1165 (1253)
                      |++|++.+|++|++||+.++....+++++.++++.+++.+++..+|.|+++.+..+..+||||||||++|||||+++|++
T Consensus        79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l  158 (236)
T cd03253          79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI  158 (236)
T ss_pred             EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999987655667778888899999999999999999999999999999999999999999999999


Q ss_pred             EEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHHH
Q 000851         1166 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1242 (1253)
Q Consensus      1166 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~~ 1242 (1253)
                      |||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++.+ ..+.|+.++.
T Consensus       159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~-~~~~~~~~~~  234 (236)
T cd03253         159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWK  234 (236)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh-cccHHHHHHh
Confidence            999999999999999999999998766889999999999998899999999999999999999987 4677777664

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=8.9e-46  Score=367.38  Aligned_cols=208  Identities=34%  Similarity=0.582  Sum_probs=188.1

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCC---HHHHhcc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLREQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~~  453 (1253)
                      |+|+||+++|++. .++|+||||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|+|+..+.   ...+|++
T Consensus         2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence            7899999999876 56999999999999999999999999999999999999999999999999997665   5569999


Q ss_pred             cEEEeccCccCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          454 MGLVSQEPALFAT-SIANNILLGKED------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       454 i~~v~Q~~~lf~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      ||+|+||..|... |+.||++|...-      .-.+++.++++.+++.+-...+|.           +||||||||+|||
T Consensus        81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA  149 (223)
T COG2884          81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA  149 (223)
T ss_pred             eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence            9999999988755 999999996431      124678889999999988888886           8999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhhc-CEEEEEeCCEEEEeeCc
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTH  596 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~-d~i~vl~~G~i~~~g~~  596 (1253)
                      ||++.+|++||-||||.+|||++...|++.+.++. .|.||++.||+.+.+... -|++.+++|+++....+
T Consensus       150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~  221 (223)
T COG2884         150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR  221 (223)
T ss_pred             HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence            99999999999999999999999999999999984 589999999999999886 78999999999876543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=1.4e-45  Score=362.25  Aligned_cols=211  Identities=33%  Similarity=0.564  Sum_probs=189.6

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |.+++|.|+|...+    =..+++|++||++||+||||||||||+++|+||..|.+|+|.|+|+|....++.  ++-+++
T Consensus         2 l~L~~V~~~y~~~~----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm   75 (231)
T COG3840           2 LALDDVRFSYGHLP----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM   75 (231)
T ss_pred             ccccceEEeeCcce----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence            56789999997543    257899999999999999999999999999999999999999999999876664  356999


Q ss_pred             EeccCccCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFAT-SIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      ++||..||.- ||++||.+|....      ..+++..++..+++..|.++||.           +||||||||+||||+|
T Consensus        76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl  144 (231)
T COG3840          76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL  144 (231)
T ss_pred             hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence            9999999966 9999999996421      35678899999999999999996           8999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcCc
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKGG  604 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~  604 (1253)
                      +++-|||+||||+|+|||.-+..+...+.++.  ++.|+++|||.++.++. +|+++++++|||.++|+.+++.+..+
T Consensus       145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~  222 (231)
T COG3840         145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA  222 (231)
T ss_pred             hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence            99999999999999999999999999998875  46899999999999876 89999999999999999999887543

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=4.7e-45  Score=403.92  Aligned_cols=233  Identities=56%  Similarity=0.923  Sum_probs=214.1

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+++ +.++++|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (234)
T cd03251           1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG   79 (234)
T ss_pred             CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            4789999999743 236999999999999999999999999999999999999999999999999998888888899999


Q ss_pred             EEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000851         1086 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165 (1253)
Q Consensus      1086 ~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1165 (1253)
                      |+||++.+|+.|++||+.++....+.+++.+.++..++.++++.+|.|+++.++.....||||||||++|||||+++|++
T Consensus        80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  159 (234)
T cd03251          80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI  159 (234)
T ss_pred             EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999987655556677778888899999999999999999999999999999999999999999999


Q ss_pred             EEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHH
Q 000851         1166 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240 (1253)
Q Consensus      1166 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L 1240 (1253)
                      |||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+ ..+.|+.+
T Consensus       160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~  233 (234)
T cd03251         160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA-QGGVYAKL  233 (234)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH-cCcchhhh
Confidence            999999999999999999999999878899999999999998899999999999999999999987 45555543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=6.1e-45  Score=403.96  Aligned_cols=235  Identities=63%  Similarity=1.016  Sum_probs=214.6

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+...+.++|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            47899999997433356999999999999999999999999999999999999999999999999998888778888999


Q ss_pred             EEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000851         1086 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165 (1253)
Q Consensus      1086 ~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1165 (1253)
                      |++|++.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++.++....+||||||||++|||||+.+|++
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  160 (238)
T cd03249          81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI  160 (238)
T ss_pred             EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999987555556677778888899999999999999999999999999999999999999999999


Q ss_pred             EEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHHH
Q 000851         1166 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1166 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~ 1241 (1253)
                      |||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+ ..+.++.++
T Consensus       161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~~  235 (238)
T cd03249         161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLV  235 (238)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh-cChhHHHHh
Confidence            999999999999999999999998777899999999999998899999999999999999999987 455555554

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=8e-45  Score=400.74  Aligned_cols=226  Identities=52%  Similarity=0.891  Sum_probs=211.4

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcc
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~ 1083 (1253)
                      +.|+++|++++|+.  ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|++
T Consensus         1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (229)
T cd03254           1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM   78 (229)
T ss_pred             CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence            35899999999963  2359999999999999999999999999999999999999999999999999988888889999


Q ss_pred             eEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000851         1084 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p 1163 (1253)
                      ++|+||++.+|++|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+++|
T Consensus        79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p  158 (229)
T cd03254          79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP  158 (229)
T ss_pred             EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999876555667788888999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhh
Q 000851         1164 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1164 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      ++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  226 (229)
T cd03254         159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA  226 (229)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence            99999999999999999999999999877899999999999998899999999999999999988876

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=8.6e-45  Score=401.87  Aligned_cols=232  Identities=54%  Similarity=0.902  Sum_probs=213.9

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL   80 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            57899999997542359999999999999999999999999999999999999999999999999987777788889999


Q ss_pred             EeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 000851          457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL  536 (1253)
Q Consensus       457 v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~il  536 (1253)
                      ++|++.+|+.|++||+.++.+....+++.+.++..++.++++.+|.|+++..+..+.+||||||||++|||||+.+|+++
T Consensus        81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  160 (234)
T cd03251          81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL  160 (234)
T ss_pred             eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999986655566777788888999999999999999999999999999999999999999999999


Q ss_pred             EEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCchHHH
Q 000851          537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA  608 (1253)
Q Consensus       537 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~  608 (1253)
                      ||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|+.
T Consensus       161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~  232 (234)
T cd03251         161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAK  232 (234)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhh
Confidence            999999999999999999999998888999999999999988999999999999999999998877666554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=1.2e-44  Score=405.24  Aligned_cols=239  Identities=34%  Similarity=0.587  Sum_probs=218.0

Q ss_pred             CCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHh
Q 000851          372 KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR  451 (1253)
Q Consensus       372 ~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r  451 (1253)
                      ...+.|+++|++++|++....+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|
T Consensus        15 ~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   94 (257)
T cd03288          15 GLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR   94 (257)
T ss_pred             cCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence            34578999999999975333599999999999999999999999999999999999999999999999999888888889


Q ss_pred             cccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000851          452 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       452 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~  531 (1253)
                      +.|+||+|++.+|++|++||+..... ...+++.++.+..++.+++..+|.|+++.+++.+.+||||||||++||||+++
T Consensus        95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  173 (257)
T cd03288          95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR  173 (257)
T ss_pred             hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999976432 24556778888889999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc-CchHHHHH
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALV  610 (1253)
Q Consensus       532 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~y~~~~  610 (1253)
                      +|++|||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.|++++
T Consensus       174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  253 (257)
T cd03288         174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV  253 (257)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence            99999999999999999999999999988778999999999999988999999999999999999999876 45677766


Q ss_pred             H
Q 000851          611 N  611 (1253)
Q Consensus       611 ~  611 (1253)
                      .
T Consensus       254 ~  254 (257)
T cd03288         254 R  254 (257)
T ss_pred             h
Confidence            4

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=8.5e-45  Score=398.27  Aligned_cols=221  Identities=37%  Similarity=0.641  Sum_probs=206.9

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcc
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~ 1083 (1253)
                      |.|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++
T Consensus         1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   79 (221)
T cd03244           1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR   79 (221)
T ss_pred             CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence            458999999999732 2469999999999999999999999999999999999999999999999999998888889999


Q ss_pred             eEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000851         1084 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p 1163 (1253)
                      ++|+||+|.+|++|++||+.+.. ..+.+++.++++..++.+++.++|.|+++.+++.+.+||||||||++|||||+++|
T Consensus        80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p  158 (221)
T cd03244          80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS  158 (221)
T ss_pred             EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999998754 34677889999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 000851         1164 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1226 (1253)
Q Consensus      1164 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~ 1226 (1253)
                      ++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~  221 (221)
T cd03244         159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP  221 (221)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence            999999999999999999999999998778999999999999988999999999999998863

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.4e-45  Score=408.10  Aligned_cols=211  Identities=27%  Similarity=0.375  Sum_probs=169.1

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcc
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~ 1083 (1253)
                      ..+++.+|+|.|+..+ .+.++++++.++.-+++++||++|+||||+++++.+-..|..|.+-+.+           |.+
T Consensus       361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r  428 (582)
T KOG0062|consen  361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR  428 (582)
T ss_pred             CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence            3699999999997432 2799999999999999999999999999999999999999999988865           678


Q ss_pred             eEEEccCCCcc-cccHH--HHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000851         1084 IGLVQQEPALF-STTIY--ENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160 (1253)
Q Consensus      1084 i~~V~Qdp~Lf-~gTIr--eNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALl 1160 (1253)
                      |+|-.|.-+=| +-.+.  |-+.-..|..+++|+...|...|+..-+..-+          -..||||||=|+++|-+..
T Consensus       429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~  498 (582)
T KOG0062|consen  429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW  498 (582)
T ss_pred             ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence            99999987633 22211  11111124458899999988887755443221          2469999999999999999


Q ss_pred             cCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhcccchHHH
Q 000851         1161 KNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ 1239 (1253)
Q Consensus      1161 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~ 1239 (1253)
                      .+|.+|+|||||.+||.++-..+-++|+++.  --||+|||+.+.+.. |+.++|.++|+|...       +.....|++
T Consensus       499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i-------eg~~~~yKk  569 (582)
T KOG0062|consen  499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPI-------EGGIDKYKK  569 (582)
T ss_pred             CCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEee-------eccHHHHHH
Confidence            9999999999999999999999999999863  369999999999977 999999999999862       111124667


Q ss_pred             HHHHhh
Q 000851         1240 LIRLQQ 1245 (1253)
Q Consensus      1240 L~~~~~ 1245 (1253)
                      +...+.
T Consensus       570 l~~~e~  575 (582)
T KOG0062|consen  570 LLGAEL  575 (582)
T ss_pred             HHHHHH
Confidence            766554

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-45  Score=414.76  Aligned_cols=214  Identities=32%  Similarity=0.556  Sum_probs=193.0

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      ..|+++||+++|++  ..+++|+||+|++||+++|+|||||||||++++|+||.+|++|+|.+||+++.++++.  ++.|
T Consensus         4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i   79 (352)
T COG3842           4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI   79 (352)
T ss_pred             ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence            35999999999983  4599999999999999999999999999999999999999999999999999998876  4789


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          455 GLVSQEPALFAT-SIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      |+|+|+..||+- ||+|||+||...   ..    .+++.++++..++.++-.+.|           .+||||||||+|||
T Consensus        80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA  148 (352)
T COG3842          80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA  148 (352)
T ss_pred             ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence            999999999965 999999999751   11    247788888888888777766           48999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~-~~~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      |||..+|++||||||.||||.+-+..++..++++.  .|.|.|+|||+-++. ..+|||+||++|+|.+.|+++|+..++
T Consensus       149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P  228 (352)
T COG3842         149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP  228 (352)
T ss_pred             HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence            99999999999999999999999999999998874  378999999999876 458999999999999999999998764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.5e-45  Score=384.45  Aligned_cols=198  Identities=37%  Similarity=0.580  Sum_probs=174.3

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .+++++|+++|++  ..||+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..-     ...++
T Consensus         3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~   75 (248)
T COG1116           3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG   75 (248)
T ss_pred             eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence            4789999999985  4499999999999999999999999999999999999999999999999987432     35799


Q ss_pred             EEeccCccCc-ccHHHHHhcCCCCC------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          456 LVSQEPALFA-TSIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       456 ~v~Q~~~lf~-~ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      ||+|++.||+ .||+||+.+|.+..      ..+.+.+..+.+++.+|-++.|.           +||||||||+|||||
T Consensus        76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA  144 (248)
T COG1116          76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA  144 (248)
T ss_pred             EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence            9999999997 59999999986542      23456677777777777777664           899999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeC--CEEE
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKN--GQVV  591 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~--G~i~  591 (1253)
                      |+.+|+||+||||++|||+.|...+++.+.++.+  ++|+++|||++++.-. +|||+||.+  |+|.
T Consensus       145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~  212 (248)
T COG1116         145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG  212 (248)
T ss_pred             HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence            9999999999999999999999999999998853  6899999999998655 899999998  5554

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.3e-44  Score=382.06  Aligned_cols=206  Identities=35%  Similarity=0.537  Sum_probs=173.3

Q ss_pred             EEEEEEEEECCCCCC--cccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH---H-
Q 000851          377 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---L-  450 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~--~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~-  450 (1253)
                      ++++||++.|.....  .+|+++||+|++||++||+||||||||||+++|.|+..|++|.|.++|+|+..++.+.   + 
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R   81 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR   81 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence            578999999975432  3999999999999999999999999999999999999999999999999999887433   3 


Q ss_pred             hcccEEEeccCccCcc-cHHHHHhcC----CCCC--CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 000851          451 REQMGLVSQEPALFAT-SIANNILLG----KEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI  523 (1253)
Q Consensus       451 r~~i~~v~Q~~~lf~~-ti~~ni~~g----~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qri  523 (1253)
                      |++||||+|+..|.+. |++|||.+.    ....  ..+...+.++..++.+...          ...+.+|||||||||
T Consensus        82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV  151 (226)
T COG1136          82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV  151 (226)
T ss_pred             HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence            4579999999999876 999999853    2111  1233444444444443333          134568999999999


Q ss_pred             HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 000851          524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE  592 (1253)
Q Consensus       524 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~  592 (1253)
                      ||||||+.+|+|++.||||++||+++.+.|.+.+.++.  .|+|+|+|||+......|||++.|+||++.+
T Consensus       152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~  222 (226)
T COG1136         152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE  222 (226)
T ss_pred             HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence            99999999999999999999999999999999999984  3789999999999999999999999999543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.7e-45  Score=379.10  Aligned_cols=227  Identities=33%  Similarity=0.533  Sum_probs=190.6

Q ss_pred             cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCC-CHHHHhc
Q 000851         1005 NIELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL-NLRSLRR 1082 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i-~~~~lR~ 1082 (1253)
                      .++++|+++.|+.+. -.++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.+.... +....++
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~   82 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR   82 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence            488999999998432 12599999999999999999999999999999999999999999999999876554 3447889


Q ss_pred             ceEEEccCCC--ccc-ccHHHHhc----cCCCCCCHHHHHHHHHHhcHH-HHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1083 KIGLVQQEPA--LFS-TTIYENIK----YGNEDASEIELMKATKAANAH-GFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1083 ~i~~V~Qdp~--Lf~-gTIreNl~----~g~~~~~d~ei~~al~~a~l~-~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      .+.+|+|||.  |=+ -||++-|.    ...-+....+++++++.+++. +|..+.|           .+||||||||||
T Consensus        83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia  151 (252)
T COG1124          83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA  151 (252)
T ss_pred             ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence            9999999996  222 36665553    211123345688999999884 4555555           579999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCC--ceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG--RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~--~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||||.-+|++||||||||+||...++.|++.+.+..++  -|.|+|||++..+.. ||||+||++|+++|.++-+++.+
T Consensus       152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~  231 (252)
T COG1124         152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS  231 (252)
T ss_pred             HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence            999999999999999999999999999999999998764  499999999999987 99999999999999999999998


Q ss_pred             cccchHHHHHH
Q 000851         1232 KENGIYKQLIR 1242 (1253)
Q Consensus      1232 ~~~g~y~~L~~ 1242 (1253)
                      .....|.+...
T Consensus       232 ~~~h~ytr~Ll  242 (252)
T COG1124         232 HPSHPYTRELL  242 (252)
T ss_pred             CCccHHHHHHH
Confidence            65566665543

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.9e-45  Score=418.69  Aligned_cols=226  Identities=35%  Similarity=0.540  Sum_probs=193.0

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---Hh
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LR 1081 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~---lR 1081 (1253)
                      |+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...   +|
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r   81 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR   81 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            78999999996321 246999999999999999999999999999999999999999999999999999887654   58


Q ss_pred             cceEEEccCCCccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1082 RKIGLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      ++|+||||++.+|+ .|++||+.++..  ..+    .+++.++++.+++.++..+.           ..+||||||||++
T Consensus        82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~  150 (343)
T TIGR02314        82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA  150 (343)
T ss_pred             cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence            89999999999996 799999987531  122    23456667777766554433           3679999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||||+.+|++||||||||+||+.+.+.+.+.|++..+  +.|+|+|||+++.+.. ||+|++|++|+++|.|++++++.
T Consensus       151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~  230 (343)
T TIGR02314       151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS  230 (343)
T ss_pred             HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence            99999999999999999999999999999999999753  7899999999999966 99999999999999999999987


Q ss_pred             cccchH-HHHHH
Q 000851         1232 KENGIY-KQLIR 1242 (1253)
Q Consensus      1232 ~~~g~y-~~L~~ 1242 (1253)
                      .+...+ ++++.
T Consensus       231 ~p~~~~~~~~~~  242 (343)
T TIGR02314       231 HPKTPLAQKFIR  242 (343)
T ss_pred             CCCcHHHHHHHh
Confidence            544433 44443

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=2.1e-44  Score=399.23  Aligned_cols=233  Identities=53%  Similarity=0.850  Sum_probs=214.9

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++|
T Consensus         1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~   79 (236)
T cd03253           1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV   79 (236)
T ss_pred             CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            4789999999632 349999999999999999999999999999999999999999999999999988888888889999


Q ss_pred             EeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 000851          457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL  536 (1253)
Q Consensus       457 v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~il  536 (1253)
                      ++|++.+|+.|++||+.++.+..+.+++.++++..++.+.+..+|.|+++.+..++.+||||||||++|||||+++|++|
T Consensus        80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll  159 (236)
T cd03253          80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL  159 (236)
T ss_pred             ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            99999999999999999987666666777888888999999999999999999999999999999999999999999999


Q ss_pred             EEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCchHHHHH
Q 000851          537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV  610 (1253)
Q Consensus       537 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~  610 (1253)
                      ||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|+.++
T Consensus       160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~  233 (236)
T cd03253         160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW  233 (236)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence            99999999999999999999998877889999999999998899999999999999999988887766666554

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=4.9e-45  Score=392.92  Aligned_cols=221  Identities=36%  Similarity=0.558  Sum_probs=196.1

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .++++|++|+|+   ++++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.++.+++.+++-+++
T Consensus         2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i   78 (258)
T COG1120           2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL   78 (258)
T ss_pred             eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence            378999999997   45799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCC-cccccHHHHhccCCCC----------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1085 GLVQQEPA-LFSTTIYENIKYGNED----------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1085 ~~V~Qdp~-Lf~gTIreNl~~g~~~----------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      +||||++. -|.-|++|=+.+|+-.          .+.+.+.+|++..++.++..+.       +    ..||||||||+
T Consensus        79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv  147 (258)
T COG1120          79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV  147 (258)
T ss_pred             EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence            99999964 5677999999888421          1223578899999999887552       2    46999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhh-hccCEEEEEeCCEEEEecChhHHh
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      .|||||..+|+||+||||||+||...+-.|++.+++..  +|+|+|+|.|+++.. +.||++++|++|+++.+|+|+|.+
T Consensus       148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence            99999999999999999999999999999999999976  379999999999886 559999999999999999999998


Q ss_pred             hcccchHHHHH
Q 000851         1231 RKENGIYKQLI 1241 (1253)
Q Consensus      1231 ~~~~g~y~~L~ 1241 (1253)
                      ..  ...++.|
T Consensus       228 T~--e~l~~Vy  236 (258)
T COG1120         228 TE--ENLREVY  236 (258)
T ss_pred             CH--HHHHHHh
Confidence            63  3344444

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=2e-44  Score=397.53  Aligned_cols=227  Identities=50%  Similarity=0.879  Sum_probs=210.5

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      +.|+++|++|+|++. ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus         1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   79 (229)
T cd03254           1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI   79 (229)
T ss_pred             CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence            368999999999742 2499999999999999999999999999999999999999999999999999888888888999


Q ss_pred             EEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000851          455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK  534 (1253)
Q Consensus       455 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~  534 (1253)
                      +|++|++.+|+.|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|+
T Consensus        80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~  159 (229)
T cd03254          80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK  159 (229)
T ss_pred             EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999876656677888888889999999999999999999999999999999999999999999


Q ss_pred             EEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       535 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      +|||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++..+
T Consensus       160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~  227 (229)
T cd03254         160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK  227 (229)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence            99999999999999999999999998778999999999999988999999999999999988777654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.7e-45  Score=406.75  Aligned_cols=219  Identities=35%  Similarity=0.606  Sum_probs=198.4

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|.+.   .+++|+||+|+.||.++|+|||||||||++++|+|+.+|++|+|.|||.+++++++++  +.|
T Consensus         3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i   77 (338)
T COG3839           3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI   77 (338)
T ss_pred             EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence            58999999999732   2899999999999999999999999999999999999999999999999999998876  799


Q ss_pred             EEEccCCCcccc-cHHHHhccCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNED------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~~------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      ++|+|+..||+. ||+|||.|+...      ..++++.++++..++.+.+++.|           .+||||||||+||||
T Consensus        78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR  146 (338)
T COG3839          78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR  146 (338)
T ss_pred             EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence            999999999986 999999998532      23567889999999999888877           679999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhhccc
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKEN 1234 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eLl~~~~ 1234 (1253)
                      ||+++|+++|||||.|+||+..+..+...|+++.+  +.|+|.|||+..+.. -+|||+||++|+|.+.|+|.|+..++.
T Consensus       147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~  226 (338)
T COG3839         147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA  226 (338)
T ss_pred             HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence            99999999999999999999999999999998653  689999999988765 599999999999999999999998776


Q ss_pred             chHHH
Q 000851         1235 GIYKQ 1239 (1253)
Q Consensus      1235 g~y~~ 1239 (1253)
                      ..|-.
T Consensus       227 n~fVA  231 (338)
T COG3839         227 NLFVA  231 (338)
T ss_pred             chhhh
Confidence            65543

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.1e-44  Score=374.28  Aligned_cols=226  Identities=38%  Similarity=0.609  Sum_probs=196.4

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH---HHh
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLR 1081 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~---~lR 1081 (1253)
                      .|++++|+++|.   ++.|++||||+|++||.+||+|+||||||||++++.|+..|++|+|+++|.|+.+++.+   .+|
T Consensus         8 ~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           8 LIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             eEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            599999999996   45699999999999999999999999999999999999999999999999999999864   579


Q ss_pred             cceEEEccCCCcccc-cHHHHhccCCC---CCCHHHHH----HHHHHhcHHHH-HHhCCCCccccccCCCCCCChhHHHH
Q 000851         1082 RKIGLVQQEPALFST-TIYENIKYGNE---DASEIELM----KATKAANAHGF-ISRMPEGYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~g-TIreNl~~g~~---~~~d~ei~----~al~~a~l~~~-I~~lp~gldt~vge~G~~LSgGQkQr 1152 (1253)
                      +++|+++|+..||+. ||+||+.+...   ..+++++.    ..++.+|+..- .+.+|           ..||||.+.|
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR  153 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR  153 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence            999999999999975 99999998532   23344333    33455555544 33334           6899999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      +|||||+.-+|+||++|||||+|||.+...+-+.|+++.+  +.|+|+|||+++++.. ||||+++.+|+|+..|+++||
T Consensus       154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el  233 (263)
T COG1127         154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL  233 (263)
T ss_pred             HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999998764  8899999999999976 899999999999999999999


Q ss_pred             hhcccchHHHHHHHh
Q 000851         1230 LRKENGIYKQLIRLQ 1244 (1253)
Q Consensus      1230 l~~~~g~y~~L~~~~ 1244 (1253)
                      .+..+...++.++..
T Consensus       234 ~~sd~P~v~qf~~G~  248 (263)
T COG1127         234 LASDDPWVRQFFNGI  248 (263)
T ss_pred             HhCCCHHHHHHhcCC
Confidence            997666777766543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-44  Score=376.69  Aligned_cols=222  Identities=34%  Similarity=0.532  Sum_probs=187.3

Q ss_pred             cEEEEEEEEECCCCCC--cccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCC-CHHHHhc
Q 000851          376 QIEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL-QLKWLRE  452 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~--~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-~~~~~r~  452 (1253)
                      -++++|+++.|+.+..  ++|+||||+|.+||+++|||+||||||||.++|+|+.+|++|+|.++|.++... ..+..++
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~   82 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR   82 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence            4789999999985431  399999999999999999999999999999999999999999999999877543 3446788


Q ss_pred             ccEEEeccCc--cCc-ccHHHHHhcCCC----CCCHHHHHHHHHHhCcH-HHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          453 QMGLVSQEPA--LFA-TSIANNILLGKE----DASMDRVIEAAKAANAH-SFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       453 ~i~~v~Q~~~--lf~-~ti~~ni~~g~~----~~~~~~~~~~~~~~~~~-~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      .|-+|||||.  |-+ -||++-|.-+..    +...+++.++++.+++. +|..+.|           .+||||||||||
T Consensus        83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia  151 (252)
T COG1124          83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA  151 (252)
T ss_pred             ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence            8999999995  332 277777653321    12345677888888775 3555555           489999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCC--CeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN--RTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~--~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |||||.-+|++||||||||+||+..+..|++.|.+++++  -|.|+|||+++.+.+ ||||+||++|+++|.++.+++..
T Consensus       152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~  231 (252)
T COG1124         152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS  231 (252)
T ss_pred             HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence            999999999999999999999999999999999998765  499999999999987 89999999999999999999887


Q ss_pred             c-CchHHH
Q 000851          602 K-GGEYAA  608 (1253)
Q Consensus       602 ~-~~~y~~  608 (1253)
                      . ...|.+
T Consensus       232 ~~~h~ytr  239 (252)
T COG1124         232 HPSHPYTR  239 (252)
T ss_pred             CCccHHHH
Confidence            6 344544

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=5.1e-44  Score=392.09  Aligned_cols=220  Identities=40%  Similarity=0.653  Sum_probs=205.3

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      |.++++|++++|++....+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus         1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (221)
T cd03244           1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI   80 (221)
T ss_pred             CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence            46899999999975434599999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000851          455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK  534 (1253)
Q Consensus       455 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~  534 (1253)
                      +|++|++.+|+.|++||+.+... ...+++.++++..++.+++.++|.|+++..++.+.+||||||||++||||++.+|+
T Consensus        81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~  159 (221)
T cd03244          81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK  159 (221)
T ss_pred             EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999987543 45678888899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeC
Q 000851          535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT  595 (1253)
Q Consensus       535 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~  595 (1253)
                      ++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus       160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence            9999999999999999999999999877899999999999998899999999999998875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=5.4e-44  Score=396.41  Aligned_cols=234  Identities=64%  Similarity=0.989  Sum_probs=211.9

Q ss_pred             EEEEEEEEECCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          377 IEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       377 i~~~~v~f~y~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      ++++|+++.|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            47899999997532 34999999999999999999999999999999999999999999999999988777777788899


Q ss_pred             EEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000851          456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI  535 (1253)
Q Consensus       456 ~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~i  535 (1253)
                      |++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  160 (238)
T cd03249          81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI  160 (238)
T ss_pred             EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999989999999998665555667777777888999999999999999999999999999999999999999999


Q ss_pred             EEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCchHHHHH
Q 000851          536 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV  610 (1253)
Q Consensus       536 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~y~~~~  610 (1253)
                      |||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++......++.++
T Consensus       161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~  235 (238)
T cd03249         161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV  235 (238)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence            999999999999999999999998877899999999999998899999999999999999888877655555443

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-44  Score=390.34  Aligned_cols=215  Identities=35%  Similarity=0.643  Sum_probs=194.4

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCC-CCCHHHHhccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK-SLQLKWLREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~i  454 (1253)
                      -++++|++|+|+++ ..+|+|+||+|++||.++|+||||||||||++++.|++.|++|+|.++|.++. ..+...+|+++
T Consensus         3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v   81 (235)
T COG1122           3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV   81 (235)
T ss_pred             eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence            47899999999876 46999999999999999999999999999999999999999999999999988 47888999999


Q ss_pred             EEEeccC--ccCcccHHHHHhcCCCCC--CH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          455 GLVSQEP--ALFATSIANNILLGKEDA--SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       455 ~~v~Q~~--~lf~~ti~~ni~~g~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      |||+|+|  ++|..||.|.++||.++.  +.    +++.++++.+++.++.++.|           .+||||||||+|||
T Consensus        82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA  150 (235)
T COG1122          82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA  150 (235)
T ss_pred             EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence            9999999  899999999999997653  33    34667777777777655544           58999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      .+|+.+|++||||||||+||+...+.+.+.++++.+  ++|+|++||+++.+.. ||++++|++|+++.+|+++++.+.
T Consensus       151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            999999999999999999999999999999999864  4799999999999977 999999999999999998887664

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-44  Score=370.99  Aligned_cols=214  Identities=35%  Similarity=0.586  Sum_probs=186.8

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCC---HHHHhc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLRE  452 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~  452 (1253)
                      .|+++||+..||++ +.+|+||||+|++||++||+||||||||||++.|.|+.+|++|+|.++|.++...+   .+.+|+
T Consensus         3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~   81 (258)
T COG3638           3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR   81 (258)
T ss_pred             eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence            48999999999853 45999999999999999999999999999999999999999999999999998776   556788


Q ss_pred             ccEEEeccCccCcc-cHHHHHhcCCCCC-----------CHH---HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCCh
Q 000851          453 QMGLVSQEPALFAT-SIANNILLGKEDA-----------SMD---RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG  517 (1253)
Q Consensus       453 ~i~~v~Q~~~lf~~-ti~~ni~~g~~~~-----------~~~---~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg  517 (1253)
                      +|||++|++.|.+. |+.+|+..|+-..           +.+   ...++++..++.+..           -.+..+|||
T Consensus        82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~LSG  150 (258)
T COG3638          82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTLSG  150 (258)
T ss_pred             hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccCCc
Confidence            99999999999976 9999999886432           222   334455555554433           345568999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEee
Q 000851          518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       518 Gq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g  594 (1253)
                      ||+|||+|||||+++|+|+|-|||+|+|||.+.+.+++.|+++.  .|.|+|+.-|.++.+++ ||||+-|++|+|+..|
T Consensus       151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg  230 (258)
T COG3638         151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG  230 (258)
T ss_pred             chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence            99999999999999999999999999999999999999999874  57999999999999875 8999999999999999


Q ss_pred             Ccchhhh
Q 000851          595 THVDLIS  601 (1253)
Q Consensus       595 ~~~~l~~  601 (1253)
                      +.+|+-.
T Consensus       231 ~~~el~~  237 (258)
T COG3638         231 PASELTD  237 (258)
T ss_pred             ChhhhhH
Confidence            9999643

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=8e-44  Score=390.27  Aligned_cols=220  Identities=44%  Similarity=0.761  Sum_probs=202.7

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcc
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~ 1083 (1253)
                      +.|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus         1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   79 (220)
T cd03245           1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN   79 (220)
T ss_pred             CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence            358999999999632 2469999999999999999999999999999999999999999999999999988887778899


Q ss_pred             eEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000851         1084 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p 1163 (1253)
                      ++|++|++.+|..|++||+.++.+..+.+++.++++..++.+.+...|.|++|.+.+...+||||||||++||||++.+|
T Consensus        80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p  159 (220)
T cd03245          80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP  159 (220)
T ss_pred             EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999998865444566778889999999999999999999999888999999999999999999999


Q ss_pred             CEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEec
Q 000851         1164 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1164 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G 1224 (1253)
                      ++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.++.||+|++|++|++++.|
T Consensus       160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence            9999999999999999999999999987668999999999988779999999999998765

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.2e-44  Score=359.46  Aligned_cols=208  Identities=32%  Similarity=0.500  Sum_probs=188.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH---HHhc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLRR 1082 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~---~lR~ 1082 (1253)
                      |+|+||+.+|+..  +++|+||||+|++||.+-++|||||||||++++|.+...|++|+|.++|.|++++...   -+|+
T Consensus         2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR   79 (223)
T COG2884           2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR   79 (223)
T ss_pred             eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence            7999999999854  5799999999999999999999999999999999999999999999999999988644   6899


Q ss_pred             ceEEEccCCCccc-ccHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1083 KIGLVQQEPALFS-TTIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf~-gTIreNl~~g~~------~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      +||+|+||-.|.. -|+.||+++...      ..-.+++.++++.+|+.+-...+|           .+|||||+||+||
T Consensus        80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI  148 (223)
T COG2884          80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI  148 (223)
T ss_pred             eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence            9999999998775 699999998632      122457889999999999999998           5799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecCh
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1226 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~ 1226 (1253)
                      |||++.+|++||-||||-+|||++...|++.+.+.. .|.||++.||+.+.+.. --|++.+++|+++....+
T Consensus       149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~  221 (223)
T COG2884         149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR  221 (223)
T ss_pred             HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence            999999999999999999999999999999999875 59999999999999977 568999999999976554

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.3e-44  Score=387.92  Aligned_cols=215  Identities=39%  Similarity=0.649  Sum_probs=195.2

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCC-CCCHHHHhcc
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR-TLNLRSLRRK 1083 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~-~i~~~~lR~~ 1083 (1253)
                      .++++|++|+|+++  .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.+++ ..+...+|++
T Consensus         3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~   80 (235)
T COG1122           3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK   80 (235)
T ss_pred             eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence            48999999999854  57999999999999999999999999999999999999999999999999998 4788999999


Q ss_pred             eEEEccCC--CcccccHHHHhccCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1084 IGLVQQEP--ALFSTTIYENIKYGNED--ASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1084 i~~V~Qdp--~Lf~gTIreNl~~g~~~--~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      +|+|+|+|  .+|..||.|.++||...  .+.    +.+.++++.+++.++.++.|           .+||||||||+||
T Consensus        81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI  149 (235)
T COG1122          81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI  149 (235)
T ss_pred             eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence            99999999  69999999999998532  333    34667888888877754444           6899999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      |.+|..+|++||||||||+||+...+.+.+.++++.+  ++|+|+|||+++.+.. |||++||++|+++.+|+|++++++
T Consensus       150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            9999999999999999999999999999999999864  4799999999999977 999999999999999999999874

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.3e-44  Score=411.50  Aligned_cols=215  Identities=34%  Similarity=0.532  Sum_probs=186.2

Q ss_pred             EEEEEEEEECCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH---Hh
Q 000851          377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR  451 (1253)
Q Consensus       377 i~~~~v~f~y~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r  451 (1253)
                      |+++||+++|++..  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..++...   +|
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r   81 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR   81 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            78999999996322  34999999999999999999999999999999999999999999999999998876544   57


Q ss_pred             cccEEEeccCccCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          452 EQMGLVSQEPALFA-TSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       452 ~~i~~v~Q~~~lf~-~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      ++||||+|++.+|. .|++||+.++...  .+.    +++.++++..++.+..+           ..+.+||||||||++
T Consensus        82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~  150 (343)
T TIGR02314        82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA  150 (343)
T ss_pred             cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence            89999999999996 6999999986421  122    33455555555544433           445689999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |||||+.+|++||||||||+||+.+...+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.
T Consensus       151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~  230 (343)
T TIGR02314       151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS  230 (343)
T ss_pred             HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence            99999999999999999999999999999999999854  7899999999999966 89999999999999999999976


Q ss_pred             c
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      .
T Consensus       231 ~  231 (343)
T TIGR02314       231 H  231 (343)
T ss_pred             C
Confidence            5

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.3e-44  Score=381.48  Aligned_cols=217  Identities=31%  Similarity=0.532  Sum_probs=189.8

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++|++|+|.++   +||+||||+|++|+.+||+||||||||||+|+++|+.+|++|+|.++|.+++....   +.+|
T Consensus         4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I   77 (254)
T COG1121           4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI   77 (254)
T ss_pred             EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence            49999999999732   59999999999999999999999999999999999999999999999998876433   5789


Q ss_pred             EEEccCCC---cccccHHHHhccCCCC----------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1085 GLVQQEPA---LFSTTIYENIKYGNED----------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1085 ~~V~Qdp~---Lf~gTIreNl~~g~~~----------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      |||||...   -|+-||+|=+.+|...          .+.+++.+|++.+++.++..+       ++|    .|||||+|
T Consensus        78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~Q  146 (254)
T COG1121          78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQ  146 (254)
T ss_pred             EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHH
Confidence            99999653   5889999999887321          234789999999999988644       455    49999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC-CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      |+.|||||+.+|++|+|||||+++|+.++..+.+.|+++.+ ||||++|+|+++.+.. ||+|+.| |++++..|++++.
T Consensus       147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~  225 (254)
T COG1121         147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV  225 (254)
T ss_pred             HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence            99999999999999999999999999999999999999864 8999999999999865 9999999 6688899999999


Q ss_pred             hhcccchHHHHH
Q 000851         1230 LRKENGIYKQLI 1241 (1253)
Q Consensus      1230 l~~~~g~y~~L~ 1241 (1253)
                      +..  ..+.+.+
T Consensus       226 ~~~--~~l~~~~  235 (254)
T COG1121         226 LTE--ENLEKAF  235 (254)
T ss_pred             cCH--HHHHHHh
Confidence            863  3444444

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=1.7e-43  Score=387.70  Aligned_cols=220  Identities=42%  Similarity=0.731  Sum_probs=202.0

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      ++|+++|++++|++....+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (220)
T cd03245           1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI   80 (220)
T ss_pred             CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            35899999999975334599999999999999999999999999999999999999999999999998877777778899


Q ss_pred             EEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000851          455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK  534 (1253)
Q Consensus       455 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~  534 (1253)
                      +|++|++.+|..|++||+.++.+....+++.+.++..++.+.+..+|.|++|.+.....+||||||||++||||++.+|+
T Consensus        81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~  160 (220)
T cd03245          81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP  160 (220)
T ss_pred             EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence            99999999998899999998765555667778888889999999999999999999999999999999999999999999


Q ss_pred             EEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEee
Q 000851          535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG  594 (1253)
Q Consensus       535 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g  594 (1253)
                      +|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus       161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence            999999999999999999999999987668999999999988779999999999998754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=5.2e-44  Score=351.29  Aligned_cols=210  Identities=36%  Similarity=0.582  Sum_probs=189.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |.+++|.|+|...+     -.++++|++||+|||+||||||||||++++.||..|.+|+|.|||+|...-++.  ++-++
T Consensus         2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS   74 (231)
T COG3840           2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS   74 (231)
T ss_pred             ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence            56889999997432     468999999999999999999999999999999999999999999998876654  46799


Q ss_pred             EEccCCCcccc-cHHHHhccCCC-C-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGNE-D-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~~-~-----~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      .++||.-||.. ||++|+.+|.. .     ...+.+..++.++|+.+|..+||           .+||||||||+||||+
T Consensus        75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc  143 (231)
T COG3840          75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC  143 (231)
T ss_pred             hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence            99999999985 99999999842 1     23567889999999999999999           4699999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhcc
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1233 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~ 1233 (1253)
                      |+|+-+||+||||.|+|||.-++++...+.+..  ++.|+++|||.++.++. +|+++++++|||+++|+-+++++.+
T Consensus       144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~  221 (231)
T COG3840         144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK  221 (231)
T ss_pred             HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence            999999999999999999999999999998876  47799999999999865 9999999999999999999999853

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-44  Score=369.01  Aligned_cols=223  Identities=32%  Similarity=0.533  Sum_probs=195.6

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC---HHHHh
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLR 1081 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~---~~~lR 1081 (1253)
                      .|+++||+.+||+  ++.+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++...+   +..+|
T Consensus         3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r   80 (258)
T COG3638           3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR   80 (258)
T ss_pred             eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence            4899999999984  467999999999999999999999999999999999999999999999999999887   56789


Q ss_pred             cceEEEccCCCccc-ccHHHHhccCCC--------------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000851         1082 RKIGLVQQEPALFS-TTIYENIKYGNE--------------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 1146 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~--------------~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1146 (1253)
                      ++||+++|.+-|-+ -|+.+|+..|.-              ..+.....+|++++++.++...           +..+||
T Consensus        81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS  149 (258)
T COG3638          81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS  149 (258)
T ss_pred             HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence            99999999999886 589999977631              1123446678888888776543           446899


Q ss_pred             hhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 000851         1147 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1223 (1253)
Q Consensus      1147 gGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~ 1223 (1253)
                      |||+||++|||||..+|+|+|-|||+|+|||.+.+.|++.|++..  .|.|+|+.-|.++..++ ||||+-|++|+|+-.
T Consensus       150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD  229 (258)
T COG3638         150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD  229 (258)
T ss_pred             cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence            999999999999999999999999999999999999999999875  48999999999999866 999999999999999


Q ss_pred             cChhHHhhcccchHHHHHHH
Q 000851         1224 GSHEQLLRKENGIYKQLIRL 1243 (1253)
Q Consensus      1224 Gt~~eLl~~~~g~y~~L~~~ 1243 (1253)
                      |++.||-+   ..+.+.|..
T Consensus       230 g~~~el~~---~~~~~iYg~  246 (258)
T COG3638         230 GPASELTD---EALDEIYGN  246 (258)
T ss_pred             CChhhhhH---HHHHHHhcc
Confidence            99999643   456666643

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-43  Score=404.73  Aligned_cols=220  Identities=27%  Similarity=0.473  Sum_probs=187.0

Q ss_pred             cEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCC-------
Q 000851         1005 NIELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL------- 1075 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i------- 1075 (1253)
                      .|+++||+|+|+...  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.       
T Consensus        21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~  100 (320)
T PRK13631         21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI  100 (320)
T ss_pred             eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence            599999999997421  24699999999999999999999999999999999999999999999999998653       


Q ss_pred             ---------CHHHHhcceEEEccCC--CcccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCC
Q 000851         1076 ---------NLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQ-SHVGDR 1141 (1253)
Q Consensus      1076 ---------~~~~lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d~ei~~al~~a~l~~~I~~lp~gld-t~vge~ 1141 (1253)
                               +...+|++++||+|+|  .+|+.|++|||.++..  ..+.++..   +.  +.++++.+  |++ ...+..
T Consensus       101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~~--~~~~l~~~--gL~~~~~~~~  173 (320)
T PRK13631        101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---KL--AKFYLNKM--GLDDSYLERS  173 (320)
T ss_pred             ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---HH--HHHHHHHc--CCChhHhcCC
Confidence                     3567899999999998  6899999999988632  23333322   12  12344444  453 346677


Q ss_pred             CCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhh-ccCEEEEEeCCE
Q 000851         1142 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGK 1219 (1253)
Q Consensus      1142 G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ 1219 (1253)
                      +.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|+
T Consensus       174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~  253 (320)
T PRK13631        174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK  253 (320)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence            88999999999999999999999999999999999999999999998864 5899999999999884 599999999999


Q ss_pred             EEEecChhHHhh
Q 000851         1220 VAEIGSHEQLLR 1231 (1253)
Q Consensus      1220 ive~Gt~~eLl~ 1231 (1253)
                      +++.|+|+++++
T Consensus       254 i~~~g~~~~~~~  265 (320)
T PRK13631        254 ILKTGTPYEIFT  265 (320)
T ss_pred             EEEeCCHHHHhc
Confidence            999999998765

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=7.5e-44  Score=394.31  Aligned_cols=212  Identities=40%  Similarity=0.612  Sum_probs=182.9

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCH---HHHhc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL---RSLRR 1082 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~---~~lR~ 1082 (1253)
                      |+++|++++|+   +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.   ..+|+
T Consensus         1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~   77 (235)
T cd03261           1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR   77 (235)
T ss_pred             CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence            47899999996   3469999999999999999999999999999999999999999999999999987764   56789


Q ss_pred             ceEEEccCCCcccc-cHHHHhccCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1083 KIGLVQQEPALFST-TIYENIKYGNE---DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf~g-TIreNl~~g~~---~~~d~----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      +++||||++.+|+. |++||+.++..   ..+.+    ++.++++..++.++.           .....+||||||||++
T Consensus        78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~  146 (235)
T cd03261          78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA  146 (235)
T ss_pred             ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence            99999999999986 99999987521   12222    334445555443332           2334579999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||||+++|+||||||||++||+.+.+.+.+.|++..+  ++|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  226 (235)
T cd03261         147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA  226 (235)
T ss_pred             HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence            99999999999999999999999999999999998753  7899999999999876 99999999999999999999876

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.3e-43  Score=390.07  Aligned_cols=219  Identities=48%  Similarity=0.798  Sum_probs=200.1

Q ss_pred             ccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHh
Q 000851         1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 1081 (1253)
Q Consensus      1002 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR 1081 (1253)
                      ..+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   87 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH   87 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence            45679999999999753234699999999999999999999999999999999999999999999999999888878888


Q ss_pred             cceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000851         1082 RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 1161 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr 1161 (1253)
                      ++++|++|++.+|++|++||+.++......+++.+..+..++.++++.+|.|+++.+.....+||||||||++|||||++
T Consensus        88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~  167 (226)
T cd03248          88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR  167 (226)
T ss_pred             hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999998655444555666667778889999999999999999999999999999999999999


Q ss_pred             CCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEE
Q 000851         1162 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220 (1253)
Q Consensus      1162 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~i 1220 (1253)
                      +|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus       168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            99999999999999999999999999998777899999999999988999999999975

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.8e-41  Score=362.92  Aligned_cols=473  Identities=20%  Similarity=0.264  Sum_probs=353.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHH
Q 000851          728 LIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSII  807 (1253)
Q Consensus       728 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~  807 (1253)
                      ..|+++..+..+...+.......+++++..++|.++.++++..|+.-+++  -++++++.++++|+..+. +-...++.+
T Consensus        52 ~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp~~  128 (546)
T COG4615          52 PEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLPEL  128 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhHHH
Confidence            34455555555666667777888999999999999999999999999874  789999999999999998 566678889


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCcHHH-
Q 000851          808 VQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKR-  886 (1253)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~-  886 (1253)
                      .+..+..+++.+...++|+++.+++.+.+.+.++..++......+.....++...+...+.+..++|.+..+...--.+ 
T Consensus       129 ~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~  208 (546)
T COG4615         129 VQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEY  208 (546)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHH
Confidence            9999999999999999999988777776666666655555555555667778888889999999999999987653221 


Q ss_pred             -HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          887 -ISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLAL  965 (1253)
Q Consensus       887 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  965 (1253)
                       +.+.|...-+...+...+...........++.+.+....+.+|+.....   .-+........+.+.+.-.++.+....
T Consensus       209 ~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~vgi  285 (546)
T COG4615         209 VHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAVGI  285 (546)
T ss_pred             HHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHHhh
Confidence             2222222212222211111111111223344455555555566654432   222223333445556677788999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccCCCCCCCCcccccccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCC
Q 000851          966 APDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGS 1045 (1253)
Q Consensus       966 ~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGS 1045 (1253)
                      .|.+..+..|..++.++...++...-..++   ..|.-..||++||.|+|+..  .--+..||++|++||.|-|+|.|||
T Consensus       286 lP~l~~AqvA~~kiakle~~~~~a~~~~~q---~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGs  360 (546)
T COG4615         286 LPTLLTAQVAFNKIAKLELAPYKADFPRPQ---AFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGS  360 (546)
T ss_pred             hhHHHHHHHHHHHHHHhhcCCccccCCCCC---cCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCC
Confidence            999999999999998876543322211111   11223469999999999732  2347889999999999999999999


Q ss_pred             cHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHHHHhccCCCC-CCHHHHHHHHHHhcHH
Q 000851         1046 GKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNED-ASEIELMKATKAANAH 1124 (1253)
Q Consensus      1046 GKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~-~~d~ei~~al~~a~l~ 1124 (1253)
                      ||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-+||+.++      |.+. ++.+.+.+-+++..+.
T Consensus       361 GKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~  434 (546)
T COG4615         361 GKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELA  434 (546)
T ss_pred             cHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998754      2223 6677776666666554


Q ss_pred             HHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccC
Q 000851         1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHR 1202 (1253)
Q Consensus      1125 ~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHr 1202 (1253)
                      .... +.+|==+     ...||-|||.|+|+--|++.+.+|++|||=-+--||.=++...+.+--..  .|||++.|||+
T Consensus       435 ~kts-l~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHD  508 (546)
T COG4615         435 HKTS-LNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD  508 (546)
T ss_pred             hhhc-ccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecC
Confidence            3322 2222111     14699999999999999999999999999999999999999888776543  49999999999


Q ss_pred             chhhhccCEEEEEeCCEEEEe
Q 000851         1203 LSTIRNADKIAVLQQGKVAEI 1223 (1253)
Q Consensus      1203 l~ti~~~D~I~Vl~~G~ive~ 1223 (1253)
                      -.-...|||++.|++|+++|.
T Consensus       509 d~YF~~ADrll~~~~G~~~e~  529 (546)
T COG4615         509 DHYFIHADRLLEMRNGQLSEL  529 (546)
T ss_pred             chhhhhHHHHHHHhcCceeec
Confidence            999999999999999999985

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.1e-44  Score=374.99  Aligned_cols=197  Identities=36%  Similarity=0.565  Sum_probs=176.4

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .+++++|+.+|++   ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.++|.++...     ...+
T Consensus         3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~   74 (248)
T COG1116           3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI   74 (248)
T ss_pred             eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence            4889999999973   5799999999999999999999999999999999999999999999999988443     4579


Q ss_pred             EEEccCCCccc-ccHHHHhccCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFS-TTIYENIKYGNEDA------SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~-gTIreNl~~g~~~~------~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      +||+|++.||+ -|++||+.++.+..      ..+...++++.+|+.+|-++.|           .+||||||||+||||
T Consensus        75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR  143 (248)
T COG1116          75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR  143 (248)
T ss_pred             EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence            99999999999 59999999885432      2345778889999998888777           579999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhh-ccCEEEEEeC--CEE
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIR-NADKIAVLQQ--GKV 1220 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~--G~i 1220 (1253)
                      ||+.+|+||+||||.+|||+.|...+|+.+.+..  .++||++|||+.++.. -+|||+||.+  |+|
T Consensus       144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i  211 (248)
T COG1116         144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI  211 (248)
T ss_pred             HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence            9999999999999999999999999999999865  3689999999999865 5999999999  555

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.7e-43  Score=373.57  Aligned_cols=207  Identities=39%  Similarity=0.583  Sum_probs=174.9

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH---HH-
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SL- 1080 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~---~l- 1080 (1253)
                      ++++||+..|.... ..++|+++||+|++||.|||+||||||||||+++|.++..|++|.|.++|.|+..++.+   .+ 
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R   81 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR   81 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence            67999999997432 24699999999999999999999999999999999999999999999999999999854   33 


Q ss_pred             hcceEEEccCCCccc-ccHHHHhccC----CCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1081 RRKIGLVQQEPALFS-TTIYENIKYG----NEDA--SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1081 R~~i~~V~Qdp~Lf~-gTIreNl~~g----~~~~--~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      |++||||+|+..|++ -|++||+.+.    ....  ..+...+.++..++.+...          .....+||||||||+
T Consensus        82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV  151 (226)
T COG1136          82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV  151 (226)
T ss_pred             HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence            567999999999886 5999999842    1111  1334455555556654433          123468999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhccCEEEEEeCCEEEE
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVAE 1222 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive 1222 (1253)
                      ||||||+.+|+|++.||||.+||.+|.+.|++.+++..  .|+|+|+|||+......|||++.|.+|++.+
T Consensus       152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~  222 (226)
T COG1136         152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE  222 (226)
T ss_pred             HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence            99999999999999999999999999999999999974  3789999999999999999999999999543

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-43  Score=379.06  Aligned_cols=210  Identities=31%  Similarity=0.566  Sum_probs=184.8

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++|++|+|+++  ++|+||||++++|++++|+||||||||||+|+|+|+.+|++|+|.++|.+.+....   +.+||
T Consensus         4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig   78 (254)
T COG1121           4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG   78 (254)
T ss_pred             EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence            58999999999854  39999999999999999999999999999999999999999999999988765332   46799


Q ss_pred             EEeccC---ccCcccHHHHHhcCCCCC----------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          456 LVSQEP---ALFATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       456 ~v~Q~~---~lf~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      ||||..   |-|+-||+|-+.+|+...          +.+++.+|++.+++.++..+       .+    .+|||||+||
T Consensus        79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i----~~LSGGQ~QR  147 (254)
T COG1121          79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QI----GELSGGQKQR  147 (254)
T ss_pred             EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cc----cccCcHHHHH
Confidence            999965   568889999999985322          24789999999998877644       23    4799999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      +-|||||+++|++|+|||||+++|+.++..+.+.|+++++ |+|+++|||+++.+.. +|+|+.| |++++..|++++..
T Consensus       148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~  226 (254)
T COG1121         148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL  226 (254)
T ss_pred             HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence            9999999999999999999999999999999999999965 8999999999999865 8999988 56678899999887


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       227 ~~  228 (254)
T COG1121         227 TE  228 (254)
T ss_pred             CH
Confidence            64

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-44  Score=402.63  Aligned_cols=222  Identities=35%  Similarity=0.593  Sum_probs=200.1

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcc
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~ 1083 (1253)
                      ..|+++||+.+|.   +..+++|+||+|++||.+.++|||||||||++++|.||..|++|+|.+||.|+..++++  ++.
T Consensus         4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~   78 (352)
T COG3842           4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP   78 (352)
T ss_pred             ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence            3599999999996   45799999999999999999999999999999999999999999999999999998876  579


Q ss_pred             eEEEccCCCccc-ccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1084 IGLVQQEPALFS-TTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~-gTIreNl~~g~~---~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      |++|+|+..||+ .||+|||.||..   ...    ++.+.++++.+++.++-.+.|           .+|||||+||+||
T Consensus        79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL  147 (352)
T COG3842          79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL  147 (352)
T ss_pred             cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence            999999999997 599999999964   112    246788999999998877766           5799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhh-hccCEEEEEeCCEEEEecChhHHhhc
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ||||..+|++||||||-|+||..-+..++.-+++..  .|.|.|+|||+-++. .-+|||+||++|+|...|+|+|+..+
T Consensus       148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~  227 (352)
T COG3842         148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER  227 (352)
T ss_pred             HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence            999999999999999999999999999999999865  388999999998876 55999999999999999999999998


Q ss_pred             ccchHHHHH
Q 000851         1233 ENGIYKQLI 1241 (1253)
Q Consensus      1233 ~~g~y~~L~ 1241 (1253)
                      +...|-.-+
T Consensus       228 P~~~fVA~F  236 (352)
T COG3842         228 PATRFVADF  236 (352)
T ss_pred             cchHHHHHH
Confidence            777665544

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=100.00  E-value=9.3e-40  Score=385.94  Aligned_cols=468  Identities=17%  Similarity=0.156  Sum_probs=350.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCch------HHHHHHHHHHHHHHHHHHHH
Q 000851          100 YLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDS------NIIFHISSDAILVQDAIGDK  173 (1253)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~f~~~~~~G------~l~sr~~~D~~~i~~~~~~~  173 (1253)
                      ++..++.+..+....+.|+...+..+...-+-+.+.++.+...-.|+..  ..|      ..=.|+..|+....+...+.
T Consensus        91 ~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~~l  168 (604)
T COG4178          91 VFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTLDL  168 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence            3334433444444455555555555555555566666667666444432  333      22369999998888877777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000851          174 TGHALRYLSQFFVGFAVGFT---------------SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVA  238 (1253)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (1253)
                      ...++.++++++.-.+++.-               +...+..++++.+++..++..+++|.+.+..-+.++..++....+
T Consensus       169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L  248 (604)
T COG4178         169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL  248 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence            77777777666554444432               222334455556666666777888999898888899999999999


Q ss_pred             HHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 000851          239 EEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTT  318 (1253)
Q Consensus       239 ~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~  318 (1253)
                      ...-++...|-.|+.|+.|.++.++......+...+......-...+......++.++-+..++-....|+++.|.++..
T Consensus       249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa  328 (604)
T COG4178         249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQA  328 (604)
T ss_pred             HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHH
Confidence            99999999999999999999888777766665554444433333333333333333333444556678899999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--C-CCCCCCCCCC---CCCCCcEEEEEEEEECCCCCCc
Q 000851          319 IINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHS--S-ERPGDDGITL---PKLAGQIEFSEVCFAYPSRPHM  392 (1253)
Q Consensus       319 ~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~--~-~~~~~~~~~~---~~~~~~i~~~~v~f~y~~~~~~  392 (1253)
                      ...+......++.+...+..+..-++...|+.++-+.-...  + ..+.......   ...+..|+++|++..-|+.. .
T Consensus       329 ~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-~  407 (604)
T COG4178         329 VGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-T  407 (604)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCC-e
Confidence            77777777788999999999999999999999987433211  1 0001100000   11146799999999998654 5


Q ss_pred             ccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHH
Q 000851          393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI  472 (1253)
Q Consensus       393 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni  472 (1253)
                      .+++.||++++||.+.|.||||||||||++.|+|+++--+|+|....           ...+-|+||.|++-.||.||-|
T Consensus       408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l  476 (604)
T COG4178         408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREAL  476 (604)
T ss_pred             eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHH
Confidence            89999999999999999999999999999999999999999997752           1358899999999999999999


Q ss_pred             hcCCCC--CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 000851          473 LLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE  550 (1253)
Q Consensus       473 ~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~  550 (1253)
                      +|....  .+++++.+++.++++.++++++.+-.+     =...||+|||||+|+||.++++|++++|||+|||||+++|
T Consensus       477 ~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e  551 (604)
T COG4178         477 CYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETE  551 (604)
T ss_pred             hCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHH
Confidence            998765  689999999999999999999854221     3356999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEe
Q 000851          551 LIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLK  586 (1253)
Q Consensus       551 ~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~  586 (1253)
                      ..+.+.+++...+.|+|-|+||.......++.+-+.
T Consensus       552 ~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~  587 (604)
T COG4178         552 DRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL  587 (604)
T ss_pred             HHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence            999999999889999999999988877776655443

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=9.4e-44  Score=391.51  Aligned_cols=212  Identities=37%  Similarity=0.600  Sum_probs=183.6

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccC-----CCCccEEEECCccCCCCC--HH
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY-----DPISGTVLIDGYDIRTLN--LR 1078 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~-----~p~~G~I~idG~di~~i~--~~ 1078 (1253)
                      |+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|++     +|++|+|.++|.++...+  ..
T Consensus         1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   77 (227)
T cd03260           1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL   77 (227)
T ss_pred             CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence            578999999973   36999999999999999999999999999999999999     999999999999998776  56


Q ss_pred             HHhcceEEEccCCCcccccHHHHhccCCCC---C----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1079 SLRRKIGLVQQEPALFSTTIYENIKYGNED---A----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1079 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~---~----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      .+|++++|+||++.+|+.|++||+.++...   .    .++++.++++..++.+...+.++         +.+|||||||
T Consensus        78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q  148 (227)
T cd03260          78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ  148 (227)
T ss_pred             HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence            788999999999999988999999875321   1    12345566666666554433211         4689999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      |++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            999999999999999999999999999999999999998655899999999999865 999999999999999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.5e-43  Score=401.12  Aligned_cols=220  Identities=25%  Similarity=0.471  Sum_probs=187.6

Q ss_pred             cEEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCC-------
Q 000851          376 QIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL-------  445 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-------  445 (1253)
                      .|+++|++|+|++..   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++.+.       
T Consensus        21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~  100 (320)
T PRK13631         21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI  100 (320)
T ss_pred             eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence            589999999997421   2499999999999999999999999999999999999999999999999998653       


Q ss_pred             ---------CHHHHhcccEEEeccC--ccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHhcCCCCcc-ccccCC
Q 000851          446 ---------QLKWLREQMGLVSQEP--ALFATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEG  511 (1253)
Q Consensus       446 ---------~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~  511 (1253)
                               +...+|++|+||+|+|  ++|+.|++|||.++..  ..+.++..+   .  +.++++.+  |++ ...++.
T Consensus       101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~  173 (320)
T PRK13631        101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS  173 (320)
T ss_pred             ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence                     3457889999999998  7899999999998742  223333221   1  12344444  554 456778


Q ss_pred             CCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-hcCEEEEEeCCE
Q 000851          512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQ  589 (1253)
Q Consensus       512 g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~  589 (1253)
                      +.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+
T Consensus       174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~  253 (320)
T PRK13631        174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK  253 (320)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence            89999999999999999999999999999999999999999999998874 5899999999999875 599999999999


Q ss_pred             EEEeeCcchhhhc
Q 000851          590 VVESGTHVDLISK  602 (1253)
Q Consensus       590 i~~~g~~~~l~~~  602 (1253)
                      +++.|+++++...
T Consensus       254 i~~~g~~~~~~~~  266 (320)
T PRK13631        254 ILKTGTPYEIFTD  266 (320)
T ss_pred             EEEeCCHHHHhcC
Confidence            9999999998764

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=100.00  E-value=6.1e-40  Score=387.53  Aligned_cols=474  Identities=18%  Similarity=0.144  Sum_probs=353.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccC---CChhHHHHHHHhhHHHHHHHHH
Q 000851          725 QVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDE---NNTGLLISTLAADATLVRSALA  801 (1253)
Q Consensus       725 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~---~~~G~l~~r~s~D~~~i~~~~~  801 (1253)
                      ..+.+|..++.+..+....+.|+......++..-|-+.+.++-+...-.|+....   +..-..=.|+.+|+..+-+...
T Consensus        87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~  166 (604)
T COG4178          87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL  166 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence            3456677777777777888889888888888888888888888877744433211   1112234789999988888766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000851          802 DRLSIIVQNVALTVTAFVIAFIL---------------SWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATS  866 (1253)
Q Consensus       802 ~~l~~~~~~~~~~~~~~~~~~~~---------------~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (1253)
                      .....++.+++.++....+++-.               ...+.+++++.+++--++.+...+.+.+..-+..+..+....
T Consensus       167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~  246 (604)
T COG4178         167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY  246 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence            66666777766666555554421               112222222223333333334444444455555566666677


Q ss_pred             HHHHHHcchHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 000851          867 VAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIM  946 (1253)
Q Consensus       867 ~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~~~  946 (1253)
                      .+.-.-++.+.|..|+-|+...++..+.++.......+..........+......+..++-+..++-....|++++|+++
T Consensus       247 ~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lm  326 (604)
T COG4178         247 SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLM  326 (604)
T ss_pred             HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHH
Confidence            77777889999999999998888887777766665555444444444444444445555555556666778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cCCCCCCCC--ccc---ccccCcEEEEeEEEECCCCC
Q 000851          947 KSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKT--AIQPDDPAS--KEV---TEIKGNIELRNVSFKYPVRP 1019 (1253)
Q Consensus       947 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~--~~~~~~~~~--~~~---~~~~g~I~~~~Vsf~Y~~~~ 1019 (1253)
                      .+..+......+++.....++.+..-.....|+.++.....  ..+++.+..  ...   ...+..|+|+|++..-|.. 
T Consensus       327 qa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-  405 (604)
T COG4178         327 QAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-  405 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-
Confidence            99988888888999999999999988888999877754322  111111111  000   1114679999999998743 


Q ss_pred             CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccccHH
Q 000851         1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIY 1099 (1253)
Q Consensus      1020 ~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~gTIr 1099 (1253)
                       .+.++++||.|+|||.+-|.|+||||||||+++|.|+++..+|+|.+-.           -..+-|+||.|++-.||+|
T Consensus       406 -~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLr  473 (604)
T COG4178         406 -QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLR  473 (604)
T ss_pred             -CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHH
Confidence             4689999999999999999999999999999999999999999987641           1358899999999999999


Q ss_pred             HHhccCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCCh
Q 000851         1100 ENIKYGNED--ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177 (1253)
Q Consensus      1100 eNl~~g~~~--~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~ 1177 (1253)
                      |=|+|.+..  .+|+|+.+++.++++.++++++.+-     ..-...||+|||||||+||.|+++|++++|||||||||+
T Consensus       474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe  548 (604)
T COG4178         474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE  548 (604)
T ss_pred             HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence            999998654  7899999999999999999997432     224467999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEe
Q 000851         1178 ASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQ 1216 (1253)
Q Consensus      1178 ~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~ 1216 (1253)
                      ++|..+.+.+++...++|+|.|+||.....-.++.+-++
T Consensus       549 ~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~  587 (604)
T COG4178         549 ETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL  587 (604)
T ss_pred             HHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence            999999999999999999999999988877777766554

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=2.4e-43  Score=390.20  Aligned_cols=217  Identities=33%  Similarity=0.536  Sum_probs=183.5

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH---HHHhcc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLREQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~~  453 (1253)
                      |+++|++++|++.  ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+|+.
T Consensus         1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   78 (235)
T cd03261           1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR   78 (235)
T ss_pred             CeEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence            4789999999743  49999999999999999999999999999999999999999999999999877654   567889


Q ss_pred             cEEEeccCccCcc-cHHHHHhcCCC---CCCHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 000851          454 MGLVSQEPALFAT-SIANNILLGKE---DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       454 i~~v~Q~~~lf~~-ti~~ni~~g~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriai  525 (1253)
                      |+||+|++.+|+. |++||+.++..   ..+.+    ++.++++..++.           ........+||||||||++|
T Consensus        79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~i  147 (235)
T cd03261          79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-----------GAEDLYPAELSGGMKKRVAL  147 (235)
T ss_pred             eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCCHHHHHHHHH
Confidence            9999999999986 99999987632   12222    233334444333           23344456899999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||||+.+|++|||||||++||+.+.+.+.+.|+++.+  ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  227 (235)
T cd03261         148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS  227 (235)
T ss_pred             HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence            9999999999999999999999999999999998753  7899999999998875 899999999999999999888754


Q ss_pred             CchH
Q 000851          603 GGEY  606 (1253)
Q Consensus       603 ~~~y  606 (1253)
                      ...|
T Consensus       228 ~~~~  231 (235)
T cd03261         228 DDPL  231 (235)
T ss_pred             CChh
Confidence            4333

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9e-44  Score=378.77  Aligned_cols=215  Identities=32%  Similarity=0.507  Sum_probs=184.4

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH-HHHhccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL-KWLREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i  454 (1253)
                      .|+++|+++.|+..+  +++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||..+.+.+. ..-.++|
T Consensus         2 ~i~i~~~~~~~~~~~--a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~V   79 (345)
T COG1118           2 SIRINNVKKRFGAFG--ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV   79 (345)
T ss_pred             ceeehhhhhhccccc--ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcce
Confidence            378899999998544  9999999999999999999999999999999999999999999999994443332 3334689


Q ss_pred             EEEeccCccCc-ccHHHHHhcCCC------C--CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 000851          455 GLVSQEPALFA-TSIANNILLGKE------D--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       455 ~~v~Q~~~lf~-~ti~~ni~~g~~------~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriai  525 (1253)
                      |+|+|+..||. .||++||+||.+      +  ....++.+.++.+++..+-++.|           .+||||||||+||
T Consensus        80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVAL  148 (345)
T COG1118          80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVAL  148 (345)
T ss_pred             eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHHH
Confidence            99999999995 599999999962      1  12345666667776666555555           5899999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||||+.+|++|+||||+++||++-.+.+++.|+++.+  |.|+++|||+.+++. .||||+||++|+|...|+++|....
T Consensus       149 ARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~  228 (345)
T COG1118         149 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH  228 (345)
T ss_pred             HHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence            9999999999999999999999999999999988753  789999999999875 4899999999999999999999766


Q ss_pred             C
Q 000851          603 G  603 (1253)
Q Consensus       603 ~  603 (1253)
                      +
T Consensus       229 P  229 (345)
T COG1118         229 P  229 (345)
T ss_pred             C
Confidence            4

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-43  Score=391.51  Aligned_cols=219  Identities=32%  Similarity=0.543  Sum_probs=191.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCccEEEECCccCCCCCHHHHh
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD---PISGTVLIDGYDIRTLNLRSLR 1081 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~---p~~G~I~idG~di~~i~~~~lR 1081 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++   |++|+|.+||.++...+...+|
T Consensus         2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~   78 (246)
T PRK14269          2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR   78 (246)
T ss_pred             ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence            3789999999973   469999999999999999999999999999999999985   6899999999999988888889


Q ss_pred             cceEEEccCCCcccccHHHHhccCCC--------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1082 RKIGLVQQEPALFSTTIYENIKYGNE--------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~gTIreNl~~g~~--------~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      ++++|+||+|.+|+.|++||+.++..        ...++++.++++..++.+++..       .....+.+||||||||+
T Consensus        79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv  151 (246)
T PRK14269         79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL  151 (246)
T ss_pred             hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence            99999999999999999999987521        1122345566777766554432       23445678999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      +|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  231 (246)
T PRK14269        152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN  231 (246)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999999999998778999999999998865 999999999999999999999864


Q ss_pred             c
Q 000851         1233 E 1233 (1253)
Q Consensus      1233 ~ 1233 (1253)
                      +
T Consensus       232 ~  232 (246)
T PRK14269        232 P  232 (246)
T ss_pred             C
Confidence            3

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-43  Score=407.63  Aligned_cols=219  Identities=29%  Similarity=0.500  Sum_probs=192.2

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+.  +.++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.++++.  +++|
T Consensus         3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   78 (356)
T PRK11650          3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI   78 (356)
T ss_pred             EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            3899999999952  34699999999999999999999999999999999999999999999999999887764  4789


Q ss_pred             EEEccCCCccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~-gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      +||+|++.+|+ .|++|||.++..  ..+    .+++.++++..++.++..+.|           .+||||||||+||||
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR  147 (356)
T PRK11650         79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR  147 (356)
T ss_pred             EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence            99999999996 599999998642  122    245667788888877766554           579999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhccc
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1234 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~ 1234 (1253)
                      ||+++|++||||||||+||+.+.+.+.+.|++..+  +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus       148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~  227 (356)
T PRK11650        148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA  227 (356)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence            99999999999999999999999999999998754  7899999999998754 99999999999999999999988665


Q ss_pred             chHH
Q 000851         1235 GIYK 1238 (1253)
Q Consensus      1235 g~y~ 1238 (1253)
                      ..|.
T Consensus       228 ~~~~  231 (356)
T PRK11650        228 STFV  231 (356)
T ss_pred             cHHH
Confidence            5554

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-43  Score=397.31  Aligned_cols=217  Identities=32%  Similarity=0.556  Sum_probs=190.9

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI   83 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence            48999999999742224599999999999999999999999999999999999999999999999999888888899999


Q ss_pred             EEEccCCC--cccccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1085 GLVQQEPA--LFSTTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1085 ~~V~Qdp~--Lf~gTIreNl~~g~~~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      +||+|+|.  ++..|++|||.++...  .+    ++.+.++++.+++.++....|           .+||||||||++||
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA  152 (279)
T PRK13650         84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA  152 (279)
T ss_pred             eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence            99999983  6678999999876321  22    244667777777766655433           57999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhc
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      |||+++|++|||||||++||+.+.+.+.+.|++..+  |+|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus       153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13650        153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR  230 (279)
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence            999999999999999999999999999999998753  8999999999999978999999999999999999998763

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-43  Score=407.19  Aligned_cols=219  Identities=33%  Similarity=0.558  Sum_probs=191.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+   +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...++  .+++|
T Consensus         6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i   80 (351)
T PRK11432          6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI   80 (351)
T ss_pred             EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence            599999999996   3468999999999999999999999999999999999999999999999999987664  36789


Q ss_pred             EEEccCCCcccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      +||+|++.+|+. |++||+.++..  ..+    ++++.++++..++.++..+.           ...||||||||+||||
T Consensus        81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR  149 (351)
T PRK11432         81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR  149 (351)
T ss_pred             EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence            999999999975 99999998632  122    34566677777776554443           3579999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhccc
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1234 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~ 1234 (1253)
                      ||+++|++||||||||+||+.+.+.+++.|++..+  ++|+|+|||+++.+.. ||+|+||++|++++.|+|+++.+++.
T Consensus       150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~  229 (351)
T PRK11432        150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA  229 (351)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            99999999999999999999999999999998754  7899999999999855 99999999999999999999988666


Q ss_pred             chHHH
Q 000851         1235 GIYKQ 1239 (1253)
Q Consensus      1235 g~y~~ 1239 (1253)
                      ..|..
T Consensus       230 ~~~~a  234 (351)
T PRK11432        230 SRFMA  234 (351)
T ss_pred             chHHH
Confidence            55443

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-43  Score=387.93  Aligned_cols=225  Identities=36%  Similarity=0.560  Sum_probs=192.1

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .++++|++++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   79 (241)
T PRK14250          3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI   79 (241)
T ss_pred             eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence            4899999999963   4699999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEccCCCcccccHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000851         1085 GLVQQEPALFSTTIYENIKYGNED--ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~gTIreNl~~g~~~--~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~ 1162 (1253)
                      +|+||+|.+|+.|++||+.++...  ..++++.+.++..++.+          ........+||||||||++|||||+++
T Consensus        80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~  149 (241)
T PRK14250         80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANN  149 (241)
T ss_pred             EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999875321  12234444555444421          112334568999999999999999999


Q ss_pred             CCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhcccchHHH
Q 000851         1163 PSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ 1239 (1253)
Q Consensus      1163 p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~ 1239 (1253)
                      |++|||||||++||+.+.+.+.+.|++..  .++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus       150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~  229 (241)
T PRK14250        150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK  229 (241)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence            99999999999999999999999999874  37999999999999875 9999999999999999999998754445665


Q ss_pred             HHH
Q 000851         1240 LIR 1242 (1253)
Q Consensus      1240 L~~ 1242 (1253)
                      .+.
T Consensus       230 ~~~  232 (241)
T PRK14250        230 LFI  232 (241)
T ss_pred             HHH
Confidence            553

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.5e-43  Score=405.88  Aligned_cols=222  Identities=36%  Similarity=0.570  Sum_probs=187.5

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---Hh
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LR 1081 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~---lR 1081 (1253)
                      |+++||+++|+... +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++...   +|
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   81 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR   81 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            78999999997321 356999999999999999999999999999999999999999999999999998887654   57


Q ss_pred             cceEEEccCCCccc-ccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1082 RKIGLVQQEPALFS-TTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      ++|+||||++.+|+ .|++||+.++..  ..+.    +++.++++..++.++           ......+||||||||++
T Consensus        82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~  150 (343)
T PRK11153         82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA  150 (343)
T ss_pred             cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence            89999999999986 699999987521  1222    234444444444333           33344689999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||||+++|+||||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus       151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~  230 (343)
T PRK11153        151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS  230 (343)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999998753  7899999999999876 99999999999999999999987


Q ss_pred             cccchHH
Q 000851         1232 KENGIYK 1238 (1253)
Q Consensus      1232 ~~~g~y~ 1238 (1253)
                      .+...+.
T Consensus       231 ~~~~~~~  237 (343)
T PRK11153        231 HPKHPLT  237 (343)
T ss_pred             CCCcHHH
Confidence            5443343

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=1.4e-42  Score=376.52  Aligned_cols=205  Identities=39%  Similarity=0.639  Sum_probs=183.4

Q ss_pred             ccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHh
Q 000851         1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 1081 (1253)
Q Consensus      1002 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR 1081 (1253)
                      ..+.++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus         3 ~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   81 (207)
T cd03369           3 EHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR   81 (207)
T ss_pred             CCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence            34679999999999742 24699999999999999999999999999999999999999999999999999888888889


Q ss_pred             cceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000851         1082 RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 1161 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr 1161 (1253)
                      ++++||||+|.+|++|++||+.+.. ..+++++.++++                  ++.....|||||+||++||||+++
T Consensus        82 ~~i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~  142 (207)
T cd03369          82 SSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK  142 (207)
T ss_pred             hhEEEEecCCcccCccHHHHhcccC-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999998754 234444444433                  234567899999999999999999


Q ss_pred             CCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 000851         1162 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1226 (1253)
Q Consensus      1162 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~ 1226 (1253)
                      +|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus       143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence            99999999999999999999999999998778999999999999988999999999999998874

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.3e-43  Score=404.53  Aligned_cols=218  Identities=31%  Similarity=0.515  Sum_probs=188.4

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.++.  ++.+
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i   78 (353)
T TIGR03265         4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY   78 (353)
T ss_pred             EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            4899999999973   4589999999999999999999999999999999999999999999999999877654  6789


Q ss_pred             EEEccCCCccc-ccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFS-TTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~-gTIreNl~~g~~~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      +||+|++.+|+ .|++||+.++...  .+    ++.+.++++..++.++.           .....+||||||||+||||
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLAR  147 (353)
T TIGR03265        79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALAR  147 (353)
T ss_pred             EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHHH
Confidence            99999999997 6999999986321  12    23344555555544443           3445689999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhccc
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1234 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~ 1234 (1253)
                      ||+++|++||||||||+||+.+.+.+++.|++..+  +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++.
T Consensus       148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~  227 (353)
T TIGR03265       148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA  227 (353)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            99999999999999999999999999999998754  7899999999999755 99999999999999999999998665


Q ss_pred             chHH
Q 000851         1235 GIYK 1238 (1253)
Q Consensus      1235 g~y~ 1238 (1253)
                      ..|.
T Consensus       228 ~~~~  231 (353)
T TIGR03265       228 TPFV  231 (353)
T ss_pred             CHHH
Confidence            5553

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.4e-42  Score=381.90  Aligned_cols=218  Identities=52%  Similarity=0.869  Sum_probs=198.2

Q ss_pred             CCCcEEEEEEEEECCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHh
Q 000851          373 LAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR  451 (1253)
Q Consensus       373 ~~~~i~~~~v~f~y~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r  451 (1253)
                      ..+.++++|++++|+++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   87 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH   87 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence            346799999999997532 2499999999999999999999999999999999999999999999999998877777788


Q ss_pred             cccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000851          452 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       452 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~  531 (1253)
                      +.++|++|++.+|+.|++||+.++.......++.+.++...+.++++.+|.|+++.+.+.+.+||||||||++||||+++
T Consensus        88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~  167 (226)
T cd03248          88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR  167 (226)
T ss_pred             hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence            89999999999999999999998765444555555666677889999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV  590 (1253)
Q Consensus       532 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i  590 (1253)
                      +|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus       168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            99999999999999999999999999998778999999999999988999999999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-42  Score=403.52  Aligned_cols=214  Identities=30%  Similarity=0.517  Sum_probs=187.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++|++++|++ ...+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.++.  ++.||
T Consensus         3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig   79 (356)
T PRK11650          3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA   79 (356)
T ss_pred             EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence            3899999999942 23499999999999999999999999999999999999999999999999999877654  46899


Q ss_pred             EEeccCccCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          456 LVSQEPALFA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       456 ~v~Q~~~lf~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      ||+|++.+|+ .||+|||.|+...  .+    .+++.++++..++.++..+.|           .+||||||||++||||
T Consensus        80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA  148 (356)
T PRK11650         80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA  148 (356)
T ss_pred             EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence            9999999996 4999999997532  12    234566677777766665555           4899999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      |+++|++||||||||+||+.++..+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus       149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p  226 (356)
T PRK11650        149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP  226 (356)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence            9999999999999999999999999999998754  7899999999998754 8999999999999999999987653

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=8.8e-43  Score=383.82  Aligned_cols=212  Identities=34%  Similarity=0.556  Sum_probs=181.5

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccC-----CCCCcEEEECCeeCCCCC--HHH
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY-----EPTSGKILLDGHDLKSLQ--LKW  449 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~~g~~~~~~~--~~~  449 (1253)
                      |+++||+++|+++  ++|+|+||+|++||+++|+||||||||||+++|+|++     +|++|+|.++|+++.+.+  ...
T Consensus         1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   78 (227)
T cd03260           1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE   78 (227)
T ss_pred             CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence            5789999999753  4999999999999999999999999999999999999     999999999999987766  566


Q ss_pred             HhcccEEEeccCccCcccHHHHHhcCCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          450 LREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       450 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      +|++++|++|++.+|+.|++||+.++....   .    .+++.++++..++.+.+.+.++         +.+||||||||
T Consensus        79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr  149 (227)
T cd03260          79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR  149 (227)
T ss_pred             HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence            788999999999999779999998753211   1    2344555555555444333211         46899999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchh
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      ++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            99999999999999999999999999999999999998655899999999998865 899999999999999987764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-42  Score=402.25  Aligned_cols=213  Identities=31%  Similarity=0.537  Sum_probs=186.0

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++.  +++||
T Consensus         6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig   81 (351)
T PRK11432          6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDIC   81 (351)
T ss_pred             EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence            5899999999974  3499999999999999999999999999999999999999999999999999876643  57899


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          456 LVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      ||+|++.+|+. |++|||.|+...  .+    .+++.++++..++.++..+           .+.+||||||||+|||||
T Consensus        82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r-----------~~~~LSgGq~QRVaLARa  150 (351)
T PRK11432         82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR-----------YVDQISGGQQQRVALARA  150 (351)
T ss_pred             EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHH
Confidence            99999999975 999999997431  12    2455566666666554444           346899999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      |+.+|++||||||||+||+.+.+.+.+.|+++.+  ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..+.
T Consensus       151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p  228 (351)
T PRK11432        151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP  228 (351)
T ss_pred             HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            9999999999999999999999999999998854  7999999999999855 8999999999999999999987653

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-42  Score=388.42  Aligned_cols=224  Identities=33%  Similarity=0.516  Sum_probs=190.1

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~--i~~ 1077 (1253)
                      .|+++|++++|+.   .++|+|+||+|++||+++|+|+||||||||+++|.|+++|     ++|+|.+||.++..  .+.
T Consensus         7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence            5999999999963   4699999999999999999999999999999999999997     48999999998853  345


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCCC---CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNED---AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~---~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++|+||++.+|+.|++|||.++...   .+    ++.+.++++.+++.+.+   ++.+++    ...+||||||
T Consensus        84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~  156 (254)
T PRK14273         84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ  156 (254)
T ss_pred             HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence            5788999999999999999999999875311   11    23455666666654332   223444    4568999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  236 (254)
T PRK14273        157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL  236 (254)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999865 999999999999999999999


Q ss_pred             hhcccchHH
Q 000851         1230 LRKENGIYK 1238 (1253)
Q Consensus      1230 l~~~~g~y~ 1238 (1253)
                      .+++...|.
T Consensus       237 ~~~~~~~~~  245 (254)
T PRK14273        237 FFNPKNTKT  245 (254)
T ss_pred             HhCCCChHH
Confidence            865444443

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-42  Score=391.58  Aligned_cols=213  Identities=32%  Similarity=0.554  Sum_probs=187.6

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+.  ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus         4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   81 (274)
T PRK13647          4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV   81 (274)
T ss_pred             eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence            4899999999963  24699999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEccCC--CcccccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1085 GLVQQEP--ALFSTTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1085 ~~V~Qdp--~Lf~gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      +||||+|  .+|..|++||+.++..  ..+    ++++.++++.+++.++..+.|           ..||||||||++||
T Consensus        82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la  150 (274)
T PRK13647         82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA  150 (274)
T ss_pred             EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence            9999998  6788999999987532  122    234566777777766655444           47999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      |||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus       151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  226 (274)
T PRK13647        151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT  226 (274)
T ss_pred             HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence            99999999999999999999999999999999875 4899999999999985 59999999999999999987653

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-42  Score=394.61  Aligned_cols=217  Identities=34%  Similarity=0.575  Sum_probs=184.6

Q ss_pred             EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC--HHHHh
Q 000851         1006 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--LRSLR 1081 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~--~~~lR 1081 (1253)
                      |+++||+++|+...  ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+  ...+|
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR   82 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence            78999999997421  146999999999999999999999999999999999999999999999999998754  45788


Q ss_pred             cceEEEccCC--CcccccHHHHhccCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1082 RKIGLVQQEP--ALFSTTIYENIKYGNE--DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1082 ~~i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d~----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      ++|+||||+|  .+|+.|++|||.++..  ..+.+    .+.++++.+++.         +.+........||||||||+
T Consensus        83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv  153 (287)
T PRK13637         83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV  153 (287)
T ss_pred             hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence            9999999998  5788999999987531  22333    344455554442         01223445578999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      +|||||+.+|++|||||||++||+.+.+.+.+.|+++.+  ++|||+|||+++.+. .||||++|++|++++.|++++++
T Consensus       154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13637        154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF  233 (287)
T ss_pred             HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999999999998753  789999999999985 59999999999999999999987


Q ss_pred             h
Q 000851         1231 R 1231 (1253)
Q Consensus      1231 ~ 1231 (1253)
                      +
T Consensus       234 ~  234 (287)
T PRK13637        234 K  234 (287)
T ss_pred             h
Confidence            5

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.1e-42  Score=385.66  Aligned_cols=221  Identities=29%  Similarity=0.531  Sum_probs=184.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHH-hcce
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRKI 1084 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~l-R~~i 1084 (1253)
                      ++++||+++|+   +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+++
T Consensus         1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (236)
T cd03219           1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI   77 (236)
T ss_pred             CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence            46899999996   3469999999999999999999999999999999999999999999999999988876654 6789


Q ss_pred             EEEccCCCcccc-cHHHHhccCCCCCCHHHH-------HHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNEDASEIEL-------MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~~~~d~ei-------~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      +|+||++.+|++ |++||+.++........+       ........+.++++.+  |++.........||||||||++||
T Consensus        78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la  155 (236)
T cd03219          78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA  155 (236)
T ss_pred             EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence            999999999986 999999875321100000       0000111233444443  455555566678999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (236)
T cd03219         156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN  232 (236)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence            99999999999999999999999999999999875 68899999999999966 99999999999999999999875

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.8e-42  Score=386.03  Aligned_cols=222  Identities=34%  Similarity=0.564  Sum_probs=188.6

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----ccEEEECCccCCCC--CHH
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDIRTL--NLR 1078 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~-----~G~I~idG~di~~i--~~~ 1078 (1253)
                      |+++||+++|+.   .++++|+||+|++||++||+|+||||||||+++|.|+++|+     +|+|.+||.++...  +..
T Consensus         2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~   78 (247)
T TIGR00972         2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV   78 (247)
T ss_pred             EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence            789999999973   35999999999999999999999999999999999999998     99999999998763  456


Q ss_pred             HHhcceEEEccCCCcccccHHHHhccCCC--C-CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1079 SLRRKIGLVQQEPALFSTTIYENIKYGNE--D-AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1079 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~-~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      .+|++++|+||++.+|+.|++||+.++..  . .+    ++++.++++..++.+++.       ........+|||||||
T Consensus        79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q  151 (247)
T TIGR00972        79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ  151 (247)
T ss_pred             HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence            77899999999999999999999986421  1 11    234555666666653221       1233445689999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      |++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus       152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (247)
T TIGR00972       152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF  231 (247)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998767899999999999865 9999999999999999999998


Q ss_pred             hcccchH
Q 000851         1231 RKENGIY 1237 (1253)
Q Consensus      1231 ~~~~g~y 1237 (1253)
                      ..+...+
T Consensus       232 ~~~~~~~  238 (247)
T TIGR00972       232 TNPKEKR  238 (247)
T ss_pred             hCCCChH
Confidence            6444443

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=9.7e-43  Score=402.22  Aligned_cols=208  Identities=33%  Similarity=0.540  Sum_probs=182.0

Q ss_pred             CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHH----hcceEEEccCCCccc
Q 000851         1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL----RRKIGLVQQEPALFS 1095 (1253)
Q Consensus      1020 ~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~l----R~~i~~V~Qdp~Lf~ 1095 (1253)
                      +.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||.++...+...+    |++++||+|++.+|+
T Consensus         5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~   84 (363)
T TIGR01186         5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP   84 (363)
T ss_pred             CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence            3458999999999999999999999999999999999999999999999999999998887    789999999999998


Q ss_pred             -ccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000851         1096 -TTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL 1168 (1253)
Q Consensus      1096 -gTIreNl~~g~~~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlL 1168 (1253)
                       .|++|||.++.+.  .+    .+++.++++.+++.++..+.           ..+||||||||++|||||+++|+||||
T Consensus        85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLLl  153 (363)
T TIGR01186        85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILLM  153 (363)
T ss_pred             CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence             5999999875321  12    34566677777776555444           457999999999999999999999999


Q ss_pred             ecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhhcccchHH
Q 000851         1169 DEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1238 (1253)
Q Consensus      1169 DEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~ 1238 (1253)
                      |||||+||+.+.+.+++.+.+..  .++|+|+|||+++.+. .||+|++|++|++++.|+|+++++++...|.
T Consensus       154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~  226 (363)
T TIGR01186       154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV  226 (363)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence            99999999999999999999874  3799999999999874 5999999999999999999999875544443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=1.6e-42  Score=384.59  Aligned_cols=211  Identities=32%  Similarity=0.553  Sum_probs=180.8

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++||+++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.  .+++++
T Consensus         3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   77 (239)
T cd03296           3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG   77 (239)
T ss_pred             EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence            789999999973   469999999999999999999999999999999999999999999999999876543  367899


Q ss_pred             EEccCCCccc-ccHHHHhccCCCCC------C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1086 LVQQEPALFS-TTIYENIKYGNEDA------S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~~~~------~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      ||||+|.+|+ .|++||+.++....      +    .+++.++++..++.++.           .....+||||||||++
T Consensus        78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~  146 (239)
T cd03296          78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA  146 (239)
T ss_pred             EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence            9999999986 69999998753211      1    12334445555544333           3344679999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||||+++|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (239)
T cd03296         147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD  226 (239)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence            99999999999999999999999999999999998753  7899999999998765 99999999999999999999976


Q ss_pred             c
Q 000851         1232 K 1232 (1253)
Q Consensus      1232 ~ 1232 (1253)
                      .
T Consensus       227 ~  227 (239)
T cd03296         227 H  227 (239)
T ss_pred             C
Confidence            4

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-42  Score=387.37  Aligned_cols=219  Identities=32%  Similarity=0.557  Sum_probs=188.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~--i~~ 1077 (1253)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .+.
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (253)
T PRK14242          6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV   82 (253)
T ss_pred             EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence            4999999999963   469999999999999999999999999999999999975     589999999999865  345


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC--C-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--D-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~-----~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++|+||++.+|+.|++||+.++..  .     ..++++.++++.+++.+++.       ...+....+||||||
T Consensus        83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~  155 (253)
T PRK14242         83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ  155 (253)
T ss_pred             HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence            678899999999999999999999986521  1     11345566666666654332       223455678999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14242        156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI  235 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998668899999999999865 999999999999999999999


Q ss_pred             hhcc
Q 000851         1230 LRKE 1233 (1253)
Q Consensus      1230 l~~~ 1233 (1253)
                      .+.+
T Consensus       236 ~~~~  239 (253)
T PRK14242        236 FTRP  239 (253)
T ss_pred             HcCC
Confidence            8643

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-42  Score=390.66  Aligned_cols=216  Identities=36%  Similarity=0.574  Sum_probs=188.0

Q ss_pred             cEEEEEEEEECCCC-CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          376 QIEFSEVCFAYPSR-PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      -++++||+++|++. ...+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI   83 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence            48999999999742 23499999999999999999999999999999999999999999999999999887887888999


Q ss_pred             EEEeccCc--cCcccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          455 GLVSQEPA--LFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       455 ~~v~Q~~~--lf~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      +||+|+|.  ++..|++|||.++...  .+.    +++.++++..++.++.+..           ..+||||||||++||
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA  152 (279)
T PRK13650         84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA  152 (279)
T ss_pred             eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence            99999983  5567999999987432  222    3455666666665554443           458999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |||+.+|++|||||||++||+.+.+.+.+.|+++.+  |+|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus       153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13650        153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR  230 (279)
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence            999999999999999999999999999999998853  7999999999999988999999999999999998887654

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=1.5e-42  Score=385.79  Aligned_cols=213  Identities=36%  Similarity=0.577  Sum_probs=182.3

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC---HHHHhc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLRR 1082 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~---~~~lR~ 1082 (1253)
                      ++++||+++|+.  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+   ...+|+
T Consensus         1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (241)
T cd03256           1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR   78 (241)
T ss_pred             CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence            478999999963  146999999999999999999999999999999999999999999999999998876   456789


Q ss_pred             ceEEEccCCCccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000851         1083 KIGLVQQEPALFS-TTIYENIKYGNED--------------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf~-gTIreNl~~g~~~--------------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSg 1147 (1253)
                      +++|+||++.+|. .|++||+.++...              ..++++.++++..++.           ......+.+|||
T Consensus        79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~  147 (241)
T cd03256          79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQRADQLSG  147 (241)
T ss_pred             ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCCcccCCH
Confidence            9999999999887 6999999864321              1122334444444443           333445678999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhh-ccCEEEEEeCCEEEEec
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G 1224 (1253)
                      |||||++|||||+++|+||||||||++||+.+.+.+.+.|++..  .++|+|+|||+++.+. .||++++|++|++++.|
T Consensus       148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~  227 (241)
T cd03256         148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG  227 (241)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence            99999999999999999999999999999999999999999875  3899999999999997 49999999999999999


Q ss_pred             ChhHHhh
Q 000851         1225 SHEQLLR 1231 (1253)
Q Consensus      1225 t~~eLl~ 1231 (1253)
                      +++++.+
T Consensus       228 ~~~~~~~  234 (241)
T cd03256         228 PPAELTD  234 (241)
T ss_pred             CHHHhhH
Confidence            9998743

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-42  Score=386.70  Aligned_cols=222  Identities=34%  Similarity=0.566  Sum_probs=190.1

Q ss_pred             cCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCC--C
Q 000851         1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--L 1075 (1253)
Q Consensus      1003 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~--i 1075 (1253)
                      .+.|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .
T Consensus        11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~   87 (260)
T PRK10744         11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ   87 (260)
T ss_pred             CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence            456999999999973   369999999999999999999999999999999999996     589999999999853  4


Q ss_pred             CHHHHhcceEEEccCCCcccccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChh
Q 000851         1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148 (1253)
Q Consensus      1076 ~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~---~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgG 1148 (1253)
                      +...+|++++|+||++.+|+.|++||+.++..   ..+    ++++.++++.+++.+.+       ....+....+||||
T Consensus        88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G  160 (260)
T PRK10744         88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG  160 (260)
T ss_pred             chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence            56678999999999999999999999987532   122    23455666666653322       22344556789999


Q ss_pred             HHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 000851         1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1149 QkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      ||||++|||||+++|+||||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus       161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  240 (260)
T PRK10744        161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD  240 (260)
T ss_pred             HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999998778899999999999865 9999999999999999999


Q ss_pred             HHhhccc
Q 000851         1228 QLLRKEN 1234 (1253)
Q Consensus      1228 eLl~~~~ 1234 (1253)
                      ++...+.
T Consensus       241 ~~~~~~~  247 (260)
T PRK10744        241 TIFTKPA  247 (260)
T ss_pred             HHHhCCC
Confidence            9986433

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=2e-42  Score=404.34  Aligned_cols=222  Identities=27%  Similarity=0.518  Sum_probs=195.5

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+   +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|+++
T Consensus         3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i   79 (402)
T PRK09536          3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV   79 (402)
T ss_pred             eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence            389999999996   35699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCc-ccccHHHHhccCCC----------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1085 GLVQQEPAL-FSTTIYENIKYGNE----------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1085 ~~V~Qdp~L-f~gTIreNl~~g~~----------~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      +||+|++.+ |+.|++||+.++..          ..+.+.+.++++.+++.++..+           ...+||||||||+
T Consensus        80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv  148 (402)
T PRK09536         80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV  148 (402)
T ss_pred             EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence            999999987 67899999987641          1123456778888887665533           2357999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      +|||||+++|+||||||||++||+.+...+++.|+++. +++|+|+++|+++.+.. |||+++|++|++++.|++++++.
T Consensus       149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~  228 (402)
T PRK09536        149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT  228 (402)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence            99999999999999999999999999999999999875 47899999999999955 99999999999999999999886


Q ss_pred             cccchHHHHHH
Q 000851         1232 KENGIYKQLIR 1242 (1253)
Q Consensus      1232 ~~~g~y~~L~~ 1242 (1253)
                      .  ..+.+++.
T Consensus       229 ~--~~l~~~~~  237 (402)
T PRK09536        229 A--DTLRAAFD  237 (402)
T ss_pred             c--HHHHHHhC
Confidence            2  34555553

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-42  Score=401.89  Aligned_cols=213  Identities=30%  Similarity=0.489  Sum_probs=184.7

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++||+++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++.+.++.  ++.||
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig   79 (353)
T TIGR03265         4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG   79 (353)
T ss_pred             EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence            4899999999974  3499999999999999999999999999999999999999999999999999876654  57899


Q ss_pred             EEeccCccCc-ccHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          456 LVSQEPALFA-TSIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       456 ~v~Q~~~lf~-~ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      ||+|++.+|+ .|++||+.|+....  +    .+++.++++..++           +......+.+||||||||+|||||
T Consensus        80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L-----------~~~~~~~~~~LSgGq~QRvaLARa  148 (353)
T TIGR03265        80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGL-----------PGSERKYPGQLSGGQQQRVALARA  148 (353)
T ss_pred             EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------CchhhCChhhCCHHHHHHHHHHHH
Confidence            9999999996 59999999974321  1    2234444444444           334445567899999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      |+.+|++||||||||+||+.+.+.+.+.|+++.+  +.|+|+|||+++++.. ||+|++|++|++++.|+++++..+.
T Consensus       149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p  226 (353)
T TIGR03265       149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP  226 (353)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            9999999999999999999999999999998754  7899999999998755 8999999999999999999998753

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=1.9e-42  Score=401.04  Aligned_cols=217  Identities=32%  Similarity=0.536  Sum_probs=187.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++...++  .|++|+
T Consensus         3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~   77 (353)
T PRK10851          3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG   77 (353)
T ss_pred             EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence            889999999973   469999999999999999999999999999999999999999999999999987654  467899


Q ss_pred             EEccCCCccc-ccHHHHhccCCC------CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1086 LVQQEPALFS-TTIYENIKYGNE------DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~~------~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      ||+|++.+|+ .|++||+.++..      ..+    ++++.++++..++.++..+           ...+||||||||++
T Consensus        78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRva  146 (353)
T PRK10851         78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRVA  146 (353)
T ss_pred             EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence            9999999997 599999998632      112    2345556666666544433           33679999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||||+++|++||||||||+||+.+.+.+.+.|++..+  ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~  226 (353)
T PRK10851        147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR  226 (353)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999998754  7899999999999765 99999999999999999999987


Q ss_pred             cccchHH
Q 000851         1232 KENGIYK 1238 (1253)
Q Consensus      1232 ~~~g~y~ 1238 (1253)
                      ++...|.
T Consensus       227 ~p~~~~~  233 (353)
T PRK10851        227 EPATRFV  233 (353)
T ss_pred             CccchHH
Confidence            6554443

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=2.8e-42  Score=401.23  Aligned_cols=217  Identities=35%  Similarity=0.598  Sum_probs=191.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .++++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++.  ++++
T Consensus        14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   88 (375)
T PRK09452         14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV   88 (375)
T ss_pred             eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            5999999999963   4689999999999999999999999999999999999999999999999999877654  5789


Q ss_pred             EEEccCCCcccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      +||+|++.+|+. |++|||.++..  ..+    ++++.++++..++.++..+.|           .+||||||||+||||
T Consensus        89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR  157 (375)
T PRK09452         89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR  157 (375)
T ss_pred             EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence            999999999975 99999998642  112    234566777777777666555           579999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhccc
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1234 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~ 1234 (1253)
                      ||+++|++||||||||+||+.+++.+.+.|++..+  +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+++.
T Consensus       158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~  237 (375)
T PRK09452        158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK  237 (375)
T ss_pred             HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            99999999999999999999999999999998754  7899999999999754 99999999999999999999988665


Q ss_pred             chH
Q 000851         1235 GIY 1237 (1253)
Q Consensus      1235 g~y 1237 (1253)
                      ..|
T Consensus       238 ~~~  240 (375)
T PRK09452        238 NLF  240 (375)
T ss_pred             cHH
Confidence            444

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-42  Score=391.81  Aligned_cols=216  Identities=25%  Similarity=0.487  Sum_probs=183.1

Q ss_pred             EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCC----CCHHH
Q 000851         1006 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT----LNLRS 1079 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~----i~~~~ 1079 (1253)
                      |+++||+|+|+...  ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..    .+...
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   81 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP   81 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence            78999999997321  1359999999999999999999999999999999999999999999999999863    34567


Q ss_pred             HhcceEEEccCC--CcccccHHHHhccCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1080 LRRKIGLVQQEP--ALFSTTIYENIKYGNED--ASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1080 lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~~--~~d~----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      +|++++||+|+|  .+|+.|+.||+.++...  .+.+    ++.++++.+++.+          ........+|||||||
T Consensus        82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq  151 (288)
T PRK13643         82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR  151 (288)
T ss_pred             HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence            899999999998  78999999999876321  2222    2334444444421          1123445689999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      |++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+. .||+|++|++|++++.|+++++
T Consensus       152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~  231 (288)
T PRK13643        152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV  231 (288)
T ss_pred             HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999998865 4889999999999885 5999999999999999999998


Q ss_pred             hh
Q 000851         1230 LR 1231 (1253)
Q Consensus      1230 l~ 1231 (1253)
                      ..
T Consensus       232 ~~  233 (288)
T PRK13643        232 FQ  233 (288)
T ss_pred             Hc
Confidence            76

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=1.8e-42  Score=379.62  Aligned_cols=211  Identities=31%  Similarity=0.527  Sum_probs=179.9

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++||+++|+.. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus         1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~   78 (220)
T cd03263           1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG   78 (220)
T ss_pred             CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence            5789999999732 14699999999999999999999999999999999999999999999999998764 366788999


Q ss_pred             EEccCCCcc-cccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALF-STTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf-~gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      ||+|++.+| ..|+++|+.++..  ..+.    +++.++++..++.+..       +    ....+||||||||++||||
T Consensus        79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~la~a  147 (220)
T cd03263          79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------N----KRARTLSGGMKRKLSLAIA  147 (220)
T ss_pred             EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------h----ChhhhCCHHHHHHHHHHHH
Confidence            999999998 5799999986421  1121    2344455555443332       2    2335799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      |+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            99999999999999999999999999999998778999999999999865 999999999999999999875

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-42  Score=389.74  Aligned_cols=215  Identities=33%  Similarity=0.580  Sum_probs=190.0

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++|
T Consensus         5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13635          5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV   83 (279)
T ss_pred             eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence            38999999999632 34699999999999999999999999999999999999999999999999999988888888999


Q ss_pred             EEEccCC--CcccccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1085 GLVQQEP--ALFSTTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1085 ~~V~Qdp--~Lf~gTIreNl~~g~~~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      +|+||+|  .+++.|++|||.++...  .+    ++++.++++..++.+++...|           ..||||||||++||
T Consensus        84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la  152 (279)
T PRK13635         84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA  152 (279)
T ss_pred             EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence            9999998  46678999999875211  12    234566777777766665544           47999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhh
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||+.+|+||||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus       153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13635        153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK  229 (279)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence            999999999999999999999999999999998763  789999999999998899999999999999999999876

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=1.5e-42  Score=400.74  Aligned_cols=201  Identities=34%  Similarity=0.528  Sum_probs=177.6

Q ss_pred             cccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHH----hcccEEEeccCccCcc-
Q 000851          392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----REQMGLVSQEPALFAT-  466 (1253)
Q Consensus       392 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~-  466 (1253)
                      .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++...+..++    |++|+||+|++++|+. 
T Consensus         7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~   86 (363)
T TIGR01186         7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM   86 (363)
T ss_pred             eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence            49999999999999999999999999999999999999999999999999999888877    7899999999999975 


Q ss_pred             cHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 000851          467 SIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE  540 (1253)
Q Consensus       467 ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE  540 (1253)
                      ||+|||.++.+..  +    .+++.++++..++.++.           ++.+.+||||||||++|||||+.+|+||||||
T Consensus        87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE  155 (363)
T TIGR01186        87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILLMDE  155 (363)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            9999999874321  1    24455666666555444           44456899999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          541 ATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       541 ~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      |||+||+.+.+.+++.+.++.  .++|+|+|||+++.+. .||+|++|++|++++.|++++++.+.
T Consensus       156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p  221 (363)
T TIGR01186       156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP  221 (363)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence            999999999999999999875  3799999999999865 58999999999999999999998763

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-42  Score=392.69  Aligned_cols=220  Identities=32%  Similarity=0.562  Sum_probs=185.5

Q ss_pred             EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCC----CHHH
Q 000851         1006 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL----NLRS 1079 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i----~~~~ 1079 (1253)
                      |+++||+++|+..+  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...    +...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP   82 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999997322  24699999999999999999999999999999999999999999999999998654    3457


Q ss_pred             HhcceEEEccCC--CcccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChhHHHHHH
Q 000851         1080 LRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQS-HVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1080 lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d~ei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSgGQkQrla 1154 (1253)
                      +|++|+||||+|  .+|+.|++|||.++..  ..+.++..+.     +.+.++.+  |+++ .....+.+||||||||++
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~  155 (286)
T PRK13646         83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA  155 (286)
T ss_pred             HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence            899999999998  5888999999987532  1233332221     22333333  5553 344567889999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||||+.+|+||||||||++||+.+...+.+.|+++.  .|+|||+|||+++.+. .||+|++|++|++++.|+++++++
T Consensus       156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  235 (286)
T PRK13646        156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK  235 (286)
T ss_pred             HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999999999999874  4899999999999985 599999999999999999999876


Q ss_pred             c
Q 000851         1232 K 1232 (1253)
Q Consensus      1232 ~ 1232 (1253)
                      .
T Consensus       236 ~  236 (286)
T PRK13646        236 D  236 (286)
T ss_pred             C
Confidence            3

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=1.2e-42  Score=379.67  Aligned_cols=203  Identities=33%  Similarity=0.570  Sum_probs=175.3

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH---HHhc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLRR 1082 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~---~lR~ 1082 (1253)
                      |+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+..   .+|+
T Consensus         2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            7899999999632 24699999999999999999999999999999999999999999999999998776543   4788


Q ss_pred             ceEEEccCCCccc-ccHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1083 KIGLVQQEPALFS-TTIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf~-gTIreNl~~g~~------~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      +++|+||+|.+|. .|++||+.++..      ...++++.++++..++.++..+.|           .+||||||||++|
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l  149 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI  149 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence            9999999999887 599999986421      112345667777777765544433           5799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEE
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~i 1220 (1253)
                      ||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus       150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999999874 47899999999999975 999999999985

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-42  Score=383.97  Aligned_cols=218  Identities=28%  Similarity=0.472  Sum_probs=188.2

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC---CCCcEEEECCeeCCCCCHHHHhc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE---PTSGKILLDGHDLKSLQLKWLRE  452 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~r~  452 (1253)
                      .|+++|+++.|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++   |++|+|.++|+++.+.+...+|+
T Consensus         2 ~~~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~   79 (246)
T PRK14269          2 IAKTTNLNLFYGKK--QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK   79 (246)
T ss_pred             ceeeeeeEEEECCE--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence            37899999999743  49999999999999999999999999999999999985   69999999999998887778888


Q ss_pred             ccEEEeccCccCcccHHHHHhcCCCC--------CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          453 QMGLVSQEPALFATSIANNILLGKED--------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       453 ~i~~v~Q~~~lf~~ti~~ni~~g~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      .|+|++|++.+|+.|++||+.++...        ...+++.++++..++.+++.       +...+.+.+||||||||++
T Consensus        80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~  152 (246)
T PRK14269         80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLC  152 (246)
T ss_pred             hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHH
Confidence            99999999999999999999876311        01123445555555544332       2345567899999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||||++++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  231 (246)
T PRK14269        153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN  231 (246)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999999999998778999999999998865 899999999999999999988654

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-42  Score=387.48  Aligned_cols=222  Identities=31%  Similarity=0.538  Sum_probs=189.8

Q ss_pred             cCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCC--C
Q 000851         1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--L 1075 (1253)
Q Consensus      1003 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~--i 1075 (1253)
                      .+.|+++||+++|+.   .++|+|+||+|++||+++|+|+||||||||+++|.|+++|     ++|+|++||.++..  .
T Consensus        17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~   93 (267)
T PRK14235         17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL   93 (267)
T ss_pred             CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence            457999999999963   4699999999999999999999999999999999999975     89999999999865  3


Q ss_pred             CHHHHhcceEEEccCCCcccccHHHHhccCCC--CC--C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000851         1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA--S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147 (1253)
Q Consensus      1076 ~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~--~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSg 1147 (1253)
                      +...+|++++|+||+|.+|+.|++||+.++..  ..  +    ++++.++++.+++.+++.       ...+..+.+|||
T Consensus        94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg  166 (267)
T PRK14235         94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG  166 (267)
T ss_pred             chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence            45678899999999999999999999986421  10  1    234566666666644332       223445678999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecCh
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1226 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~ 1226 (1253)
                      |||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus       167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~  246 (267)
T PRK14235        167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT  246 (267)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999988778899999999999965 999999999999999999


Q ss_pred             hHHhhccc
Q 000851         1227 EQLLRKEN 1234 (1253)
Q Consensus      1227 ~eLl~~~~ 1234 (1253)
                      ++++..+.
T Consensus       247 ~~~~~~~~  254 (267)
T PRK14235        247 EKMFTNPD  254 (267)
T ss_pred             HHHHhCCC
Confidence            99986433

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=2.5e-42  Score=400.39  Aligned_cols=219  Identities=30%  Similarity=0.483  Sum_probs=189.0

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCc--cEEEECCccCCCCCHHHHh
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--GTVLIDGYDIRTLNLRSLR 1081 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~--G~I~idG~di~~i~~~~lR 1081 (1253)
                      +.|+++||+++|+.   .++|+|+||+|++||+++|+||||||||||+++|.|+++|++  |+|.+||.++...++  .+
T Consensus         4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~   78 (362)
T TIGR03258         4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK   78 (362)
T ss_pred             eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence            56999999999963   469999999999999999999999999999999999999999  999999999987665  46


Q ss_pred             cceEEEccCCCcccc-cHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1082 RKIGLVQQEPALFST-TIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~g-TIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      ++|+||+|++.+|+. |++|||.++..  ..+.    +++.++++..++.++..+.           ..+||||||||+|
T Consensus        79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRva  147 (362)
T TIGR03258        79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL-----------PAQLSGGMQQRIA  147 (362)
T ss_pred             CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC-----------hhhCCHHHHHHHH
Confidence            789999999999975 99999987632  1222    2355556666665554443           3579999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC---CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME---GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~---~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      |||||+++|++||||||||+||+.+.+.+.+.|++..+   |.|+|+|||+++.+.. ||+|+||++|++++.|+++++.
T Consensus       148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~  227 (362)
T TIGR03258       148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY  227 (362)
T ss_pred             HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999999999999998754   6899999999999755 9999999999999999999999


Q ss_pred             hcccchHH
Q 000851         1231 RKENGIYK 1238 (1253)
Q Consensus      1231 ~~~~g~y~ 1238 (1253)
                      +++...|.
T Consensus       228 ~~p~~~~~  235 (362)
T TIGR03258       228 DAPADGFA  235 (362)
T ss_pred             hCcCcHHH
Confidence            86655543

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=1.9e-42  Score=389.65  Aligned_cols=219  Identities=34%  Similarity=0.555  Sum_probs=185.5

Q ss_pred             EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHH----hc
Q 000851         1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL----RR 1082 (1253)
Q Consensus      1007 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~l----R~ 1082 (1253)
                      .++||+++|.   +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+    ++
T Consensus        26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~  102 (269)
T cd03294          26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK  102 (269)
T ss_pred             hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence            4567777775   3468999999999999999999999999999999999999999999999999988765543    46


Q ss_pred             ceEEEccCCCccc-ccHHHHhccCCC--CC----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1083 KIGLVQQEPALFS-TTIYENIKYGNE--DA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      +++|+||++.+|+ .|++||+.++..  ..    .++++.++++..++.+++.+.|           .+||||||||++|
T Consensus       103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l  171 (269)
T cd03294         103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL  171 (269)
T ss_pred             cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence            8999999999885 699999986421  11    1234566677777666555443           4799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ||||+++|+||||||||++||+.+.+.+.+.|++..  .|+|+|++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus       172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  251 (269)
T cd03294         172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN  251 (269)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence            999999999999999999999999999999999874  37999999999999865 999999999999999999999875


Q ss_pred             ccchHHH
Q 000851         1233 ENGIYKQ 1239 (1253)
Q Consensus      1233 ~~g~y~~ 1239 (1253)
                      +...|.+
T Consensus       252 ~~~~~~~  258 (269)
T cd03294         252 PANDYVR  258 (269)
T ss_pred             cCcHHHH
Confidence            5554544

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=2.7e-42  Score=381.51  Aligned_cols=215  Identities=37%  Similarity=0.585  Sum_probs=183.6

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH---HHh
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLR 1081 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~---~lR 1081 (1253)
                      |+++|++++|+.+. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..   .+|
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR   81 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence            78999999997321 12699999999999999999999999999999999999999999999999999877654   357


Q ss_pred             cceEEEccCCCccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1082 RKIGLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      ++++|+||++.+|. .|++||+.++..  ..+    .+++.++++..++.+...           ....+||||||||++
T Consensus        82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~  150 (233)
T cd03258          82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG  150 (233)
T ss_pred             hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence            89999999999997 699999986421  111    234455555555544433           344689999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-C-CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||||+++|++|||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            9999999999999999999999999999999999875 3 7899999999999865 99999999999999999998875

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=2.1e-42  Score=383.32  Aligned_cols=221  Identities=27%  Similarity=0.509  Sum_probs=185.2

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHH-hcccE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQMG  455 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~  455 (1253)
                      ++++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..++
T Consensus         1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (236)
T cd03219           1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG   78 (236)
T ss_pred             CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence            468999999974  349999999999999999999999999999999999999999999999999987776544 56799


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          456 LVSQEPALFAT-SIANNILLGKEDASMDRV-------IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      |++|++.+|.. |++||+.++........+       ........+++.++.+  |++...+....+||||||||++|||
T Consensus        79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~  156 (236)
T cd03219          79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR  156 (236)
T ss_pred             EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence            99999999986 999999886432110000       0001111233445554  5666667777899999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (236)
T cd03219         157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN  232 (236)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence            9999999999999999999999999999999876 68899999999999866 89999999999999999888754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.1e-42  Score=383.70  Aligned_cols=212  Identities=34%  Similarity=0.558  Sum_probs=181.0

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCH---HHHhc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL---RSLRR 1082 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~---~~lR~ 1082 (1253)
                      |+++||+++|+.  +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++.   ..+|+
T Consensus         2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (243)
T TIGR02315         2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR   79 (243)
T ss_pred             eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence            689999999961  3469999999999999999999999999999999999999999999999999887654   34788


Q ss_pred             ceEEEccCCCccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000851         1083 KIGLVQQEPALFS-TTIYENIKYGNED--------------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf~-gTIreNl~~g~~~--------------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSg 1147 (1253)
                      +++||||++.+|. .|++||+.++...              ..++++.++++..++.+           .......+|||
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg  148 (243)
T TIGR02315        80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSG  148 (243)
T ss_pred             heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence            9999999999886 6999999865311              01223444444444433           33345578999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      |||||++|||||+++|++|||||||++||+.+.+.+.+.|++..  .++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus       149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~  228 (243)
T TIGR02315       149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG  228 (243)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            99999999999999999999999999999999999999999874  37899999999999865 9999999999999999


Q ss_pred             ChhHHh
Q 000851         1225 SHEQLL 1230 (1253)
Q Consensus      1225 t~~eLl 1230 (1253)
                      +++++.
T Consensus       229 ~~~~~~  234 (243)
T TIGR02315       229 APSELD  234 (243)
T ss_pred             CHHHhC
Confidence            999874

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-42  Score=385.86  Aligned_cols=225  Identities=31%  Similarity=0.471  Sum_probs=188.8

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCC--CCCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIR--TLNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~--~i~~ 1077 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++|     ++|+|.+||.++.  +.+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (253)
T PRK14267          4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP   80 (253)
T ss_pred             eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence            4899999999963   4699999999999999999999999999999999999987     4999999999987  4556


Q ss_pred             HHHhcceEEEccCCCcccc-cHHHHhccCCC--C--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChh
Q 000851         1078 RSLRRKIGLVQQEPALFST-TIYENIKYGNE--D--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~g-TIreNl~~g~~--~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgG 1148 (1253)
                      ..+|++++|+||++.+|+. |++||+.++..  .  .+    ++++.++++..++.+.+.       ........+||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G  153 (253)
T PRK14267         81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG  153 (253)
T ss_pred             HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence            6788999999999999975 99999986421  1  01    233455566555543322       2234455789999


Q ss_pred             HHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 000851         1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1149 QkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      ||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus       154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~  233 (253)
T PRK14267        154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR  233 (253)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999998778999999999999865 9999999999999999999


Q ss_pred             HHhhcccchHHH
Q 000851         1228 QLLRKENGIYKQ 1239 (1253)
Q Consensus      1228 eLl~~~~g~y~~ 1239 (1253)
                      ++++.+...|.+
T Consensus       234 ~~~~~~~~~~~~  245 (253)
T PRK14267        234 KVFENPEHELTE  245 (253)
T ss_pred             HHHhCCCcHHHH
Confidence            998643333433

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=3.2e-42  Score=378.21  Aligned_cols=217  Identities=30%  Similarity=0.460  Sum_probs=180.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHH-hcce
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRKI 1084 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~l-R~~i 1084 (1253)
                      |+++||+++|+.   .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (222)
T cd03224           1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI   77 (222)
T ss_pred             CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence            578999999963   469999999999999999999999999999999999999999999999999988876654 6789


Q ss_pred             EEEccCCCcccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p 1163 (1253)
                      +|+||++.+|++ |++||+.++.......+..+.     +.++++.++ +++........+||||||||++|||||+++|
T Consensus        78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p  151 (222)
T cd03224          78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP  151 (222)
T ss_pred             EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence            999999999986 999999876432211111111     111222211 1223334455679999999999999999999


Q ss_pred             CEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1164 SILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1164 ~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      ++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  221 (222)
T cd03224         152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA  221 (222)
T ss_pred             CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence            9999999999999999999999999875 57899999999999866 99999999999999999988764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.7e-42  Score=388.23  Aligned_cols=217  Identities=32%  Similarity=0.547  Sum_probs=189.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      -|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i   83 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI   83 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence            48999999999743334699999999999999999999999999999999999999999999999999887777889999


Q ss_pred             EEEccCC--CcccccHHHHhccCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1085 GLVQQEP--ALFSTTIYENIKYGNE--DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1085 ~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d~----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      +|++|+|  .++..|+.|||.++..  ..+.+    .+.++++.+++.++..+           ....||||||||++||
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA  152 (277)
T PRK13642         84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA  152 (277)
T ss_pred             EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence            9999998  4678899999986522  22332    34556666666555433           3367999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhc
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      |||+++|+||||||||++||+.+.+.+.+.|+++.+  ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus       153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  230 (277)
T PRK13642        153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT  230 (277)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            999999999999999999999999999999998754  7899999999999988999999999999999999998863

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=1.5e-42  Score=378.05  Aligned_cols=203  Identities=39%  Similarity=0.616  Sum_probs=173.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+  ..+++++
T Consensus         1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~   75 (213)
T cd03259           1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG   75 (213)
T ss_pred             CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence            478999999963   46999999999999999999999999999999999999999999999999987654  3578899


Q ss_pred             EEccCCCccc-ccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFS-TTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~~~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |+||+|.+|. .|++||+.++...  .+    .+++.++++..++.++..           ....+||||||||++||||
T Consensus        76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~a  144 (213)
T cd03259          76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARA  144 (213)
T ss_pred             EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHH
Confidence            9999999886 6999999865221  11    223445555555544433           3346799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      |+++|++|||||||++||+.+.+.+.+.|++..  .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus       145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999999999874  37899999999999865 9999999999999875

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-42  Score=384.16  Aligned_cols=227  Identities=29%  Similarity=0.463  Sum_probs=191.2

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCCCCHHH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTLNLRS 1079 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~i~~~~ 1079 (1253)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|.|+++|     ++|+|.+||.++...+...
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   79 (250)
T PRK14247          3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE   79 (250)
T ss_pred             eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence            4899999999963   4699999999999999999999999999999999999984     6999999999998888888


Q ss_pred             HhcceEEEccCCCcc-cccHHHHhccCCC--C--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1080 LRRKIGLVQQEPALF-STTIYENIKYGNE--D--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1080 lR~~i~~V~Qdp~Lf-~gTIreNl~~g~~--~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      +|++|+|+||+|.+| +.|++||+.++..  .  ..    ++++.++++..++.+.+.       ........+||||||
T Consensus        80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~  152 (250)
T PRK14247         80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ  152 (250)
T ss_pred             HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence            999999999999755 5799999986431  0  01    234566666666543322       122334467999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus       153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14247        153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV  232 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence            999999999999999999999999999999999999999877899999999999985 4999999999999999999999


Q ss_pred             hhcccchHHHHH
Q 000851         1230 LRKENGIYKQLI 1241 (1253)
Q Consensus      1230 l~~~~g~y~~L~ 1241 (1253)
                      .+.+...+.+.+
T Consensus       233 ~~~~~~~~~~~~  244 (250)
T PRK14247        233 FTNPRHELTEKY  244 (250)
T ss_pred             HcCCccHHHHHH
Confidence            875444444433

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=3.4e-42  Score=382.60  Aligned_cols=217  Identities=35%  Similarity=0.577  Sum_probs=183.8

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      ++++||+++|+..  .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   78 (242)
T cd03295           1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG   78 (242)
T ss_pred             CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence            4789999999731  46999999999999999999999999999999999999999999999999998888888899999


Q ss_pred             EEccCCCccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |+||+|.+|+ .|++||+.++..  ..+    ++++.++++..++.+         +......+.+||||||||++||||
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara  149 (242)
T cd03295          79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA  149 (242)
T ss_pred             EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence            9999999986 699999976421  111    122333333333321         013345567899999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhcc
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1233 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~ 1233 (1253)
                      |+++|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus       150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  227 (242)
T cd03295         150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP  227 (242)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence            9999999999999999999999999999998753  7999999999998755 9999999999999999999987643

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.8e-42  Score=397.31  Aligned_cols=215  Identities=37%  Similarity=0.589  Sum_probs=183.6

Q ss_pred             EEEEEEEEECCC--CCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH---Hh
Q 000851          377 IEFSEVCFAYPS--RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR  451 (1253)
Q Consensus       377 i~~~~v~f~y~~--~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r  451 (1253)
                      |+++||+|+|++  +...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...   +|
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   81 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR   81 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            789999999972  1235999999999999999999999999999999999999999999999999998776543   47


Q ss_pred             cccEEEeccCccCc-ccHHHHHhcCCCC--CCHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          452 EQMGLVSQEPALFA-TSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       452 ~~i~~v~Q~~~lf~-~ti~~ni~~g~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      ++||||+|++.+|. .|++||+.++...  .+.+    ++.+.++..           |++........+||||||||++
T Consensus        82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qRv~  150 (343)
T PRK11153         82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELV-----------GLSDKADRYPAQLSGGQKQRVA  150 (343)
T ss_pred             cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence            88999999999986 5999999876321  1222    233333333           3333444556789999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |||||+.+|++||||||||+||+.+.+.+.+.|+++.+  |+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~  230 (343)
T PRK11153        151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS  230 (343)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999998853  7899999999999876 89999999999999999999876


Q ss_pred             c
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      .
T Consensus       231 ~  231 (343)
T PRK11153        231 H  231 (343)
T ss_pred             C
Confidence            5

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=6e-42  Score=398.49  Aligned_cols=213  Identities=32%  Similarity=0.569  Sum_probs=187.2

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .++++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++.  ++.||
T Consensus        14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig   89 (375)
T PRK09452         14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN   89 (375)
T ss_pred             eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence            5899999999974  3499999999999999999999999999999999999999999999999999876654  46899


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          456 LVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      ||+|++.||+. ||+|||.|+...  .+    .+++.++++..++.++..+.|           .+||||||||++||||
T Consensus        90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa  158 (375)
T PRK09452         90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA  158 (375)
T ss_pred             EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence            99999999966 999999987531  12    234566677677666665555           4899999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      |+.+|++||||||||+||+.++..+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..+.
T Consensus       159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p  236 (375)
T PRK09452        159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP  236 (375)
T ss_pred             HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence            9999999999999999999999999999998854  7899999999998754 8999999999999999999987653

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.1e-42  Score=388.86  Aligned_cols=214  Identities=29%  Similarity=0.508  Sum_probs=185.0

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCC--CCCHHHHhc
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR--TLNLRSLRR 1082 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~--~i~~~~lR~ 1082 (1253)
                      -|+++||+++|+.  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.  ..+...+|+
T Consensus         5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~   82 (283)
T PRK13636          5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE   82 (283)
T ss_pred             eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence            4899999999962  346999999999999999999999999999999999999999999999999984  344567899


Q ss_pred             ceEEEccCC--CcccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1083 KIGLVQQEP--ALFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1083 ~i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      +++|+||+|  .+|+.|++||+.++..  ..+.    +.+.++++..++.++           ......+||||||||++
T Consensus        83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~  151 (283)
T PRK13636         83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVA  151 (283)
T ss_pred             hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHH
Confidence            999999998  5788999999987421  1222    234555566655443           23445789999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||||+.+|+||||||||++||+.+.+.+.+.|++..+  |+|||++||+++.+. .||+|++|++|++++.|+++++++
T Consensus       152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999998753  799999999999997 599999999999999999999876

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=3.1e-42  Score=376.45  Aligned_cols=203  Identities=33%  Similarity=0.542  Sum_probs=173.0

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH---HHhcc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLREQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~~  453 (1253)
                      |+++|++++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   .+|++
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH   81 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence            689999999964323499999999999999999999999999999999999999999999999998765533   46789


Q ss_pred             cEEEeccCccCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          454 MGLVSQEPALFAT-SIANNILLGKED------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       454 i~~v~Q~~~lf~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      ++|++|++.+|.. |++||+.++...      ...+++.++++..++.++..+           ...+||||||||++||
T Consensus        82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la  150 (216)
T TIGR00960        82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAIA  150 (216)
T ss_pred             ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence            9999999998874 999999875211      112345556666655544433           3458999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV  590 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i  590 (1253)
                      |||+.+|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus       151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999999875 47899999999999875 899999999975

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=1.9e-41  Score=381.06  Aligned_cols=220  Identities=30%  Similarity=0.491  Sum_probs=196.1

Q ss_pred             ccCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHh
Q 000851         1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 1081 (1253)
Q Consensus      1002 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR 1081 (1253)
                      ..+.|+++|+++..     .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||            
T Consensus        36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------   98 (282)
T cd03291          36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------   98 (282)
T ss_pred             CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence            44579999999952     3599999999999999999999999999999999999999999999998            


Q ss_pred             cceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000851         1082 RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 1161 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr 1161 (1253)
                       +++|+||++.+|++|++||+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||++
T Consensus        99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~  176 (282)
T cd03291          99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK  176 (282)
T ss_pred             -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence             3999999999999999999987542 23445667788888889999999999999999999999999999999999999


Q ss_pred             CCCEEEEecccCCCChHHHHHHHHHH-HHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhcccchHHHH
Q 000851         1162 NPSILLLDEATSALDTASENLIQEAL-DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240 (1253)
Q Consensus      1162 ~p~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L 1240 (1253)
                      +|++|||||||++||+.+.+.+.+.+ ++..+++|+|+|||+++.+..||++++|++|++++.|+++++.+. ...|.+.
T Consensus       177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~  255 (282)
T cd03291         177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSK  255 (282)
T ss_pred             CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHH
Confidence            99999999999999999999998754 555568999999999999988999999999999999999999863 4556655


Q ss_pred             H
Q 000851         1241 I 1241 (1253)
Q Consensus      1241 ~ 1241 (1253)
                      +
T Consensus       256 ~  256 (282)
T cd03291         256 L  256 (282)
T ss_pred             H
Confidence            5

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.6e-42  Score=386.85  Aligned_cols=217  Identities=31%  Similarity=0.553  Sum_probs=189.3

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      -++++||+++|++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+...+++.|+
T Consensus         5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~   84 (279)
T PRK13635          5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG   84 (279)
T ss_pred             eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence            38999999999753345999999999999999999999999999999999999999999999999998887777888999


Q ss_pred             EEeccC--ccCcccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          456 LVSQEP--ALFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       456 ~v~Q~~--~lf~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      |++|++  .+++.|++|||.++...  .+.    +++.++++..++.+++...|           .+||||||||++|||
T Consensus        85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar  153 (279)
T PRK13635         85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG  153 (279)
T ss_pred             EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence            999998  45677999999886322  122    34555666666666555544           489999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      ||+.+|++|||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus       154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  231 (279)
T PRK13635        154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG  231 (279)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence            99999999999999999999999999999998864  78999999999999889999999999999999998887653

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-42  Score=400.87  Aligned_cols=218  Identities=33%  Similarity=0.522  Sum_probs=187.0

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.  .+++|
T Consensus         3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i   77 (369)
T PRK11000          3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV   77 (369)
T ss_pred             EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence            3899999999963   469999999999999999999999999999999999999999999999999987665  35789


Q ss_pred             EEEccCCCcccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      +||+|++.+|+. |++||+.++..  ..+    ++++.++++..++.++..+           ...+||||||||++|||
T Consensus        78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRvaLAr  146 (369)
T PRK11000         78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGR  146 (369)
T ss_pred             EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence            999999999974 99999987632  112    2345566666666544433           33579999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhccc
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1234 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~ 1234 (1253)
                      ||+++|++||||||||+||+.+.+.+.+.|++..+  +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus       147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~  226 (369)
T PRK11000        147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA  226 (369)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            99999999999999999999999999999998753  7899999999998865 99999999999999999999987555


Q ss_pred             chHH
Q 000851         1235 GIYK 1238 (1253)
Q Consensus      1235 g~y~ 1238 (1253)
                      ..|.
T Consensus       227 ~~~~  230 (369)
T PRK11000        227 NRFV  230 (369)
T ss_pred             cHHH
Confidence            4443

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.1e-42  Score=390.75  Aligned_cols=216  Identities=31%  Similarity=0.519  Sum_probs=182.9

Q ss_pred             EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCC----CCHHH
Q 000851         1006 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT----LNLRS 1079 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~----i~~~~ 1079 (1253)
                      |+++||+++|+...  ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..    .+...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP   82 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999997422  1469999999999999999999999999999999999999999999999999863    34567


Q ss_pred             HhcceEEEccCC--CcccccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1080 LRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1080 lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d~e----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      +|++++||||+|  .+|+.|++|||.++..  ..+.++    +.++++.+++.+          ........+|||||||
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q  152 (290)
T PRK13634         83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR  152 (290)
T ss_pred             HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence            888999999998  6888999999987632  123332    334444444421          1123445689999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      |++|||||+.+|++|||||||++||+.+...+.+.|++..+  |.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus       153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~  232 (290)
T PRK13634        153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE  232 (290)
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999998753  7899999999999855 99999999999999999999


Q ss_pred             Hhh
Q 000851         1229 LLR 1231 (1253)
Q Consensus      1229 Ll~ 1231 (1253)
                      +.+
T Consensus       233 ~~~  235 (290)
T PRK13634        233 IFA  235 (290)
T ss_pred             Hhc
Confidence            875

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.4e-42  Score=385.26  Aligned_cols=212  Identities=31%  Similarity=0.563  Sum_probs=185.0

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      -|+++||+|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..+++++||
T Consensus         4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   82 (274)
T PRK13647          4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG   82 (274)
T ss_pred             eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence            48999999999632 34999999999999999999999999999999999999999999999999998888888888999


Q ss_pred             EEeccC--ccCcccHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          456 LVSQEP--ALFATSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       456 ~v~Q~~--~lf~~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      ||+|+|  .++..|+.||+.++...  .+    .+++.++++..++.++..+.|           .+||||||||++|||
T Consensus        83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar  151 (274)
T PRK13647         83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG  151 (274)
T ss_pred             EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence            999998  57888999999986421  12    234555666666655554444           489999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchh
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      ||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus       152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            9999999999999999999999999999999885 4799999999999985 5999999999999999988654

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=7.1e-42  Score=393.31  Aligned_cols=226  Identities=26%  Similarity=0.427  Sum_probs=188.7

Q ss_pred             cEEEEeEEEECCCCC----------CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCC
Q 000851         1005 NIELRNVSFKYPVRP----------DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT 1074 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~----------~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~ 1074 (1253)
                      -|+++|++++|+.+.          ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~   87 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG   87 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence            489999999997421          2468999999999999999999999999999999999999999999999999998


Q ss_pred             CCHH---HHhcceEEEccCC--Ccc-cccHHHHhccCC----CCCCHHH----HHHHHHHhcHHHHHHhCCCCccccccC
Q 000851         1075 LNLR---SLRRKIGLVQQEP--ALF-STTIYENIKYGN----EDASEIE----LMKATKAANAHGFISRMPEGYQSHVGD 1140 (1253)
Q Consensus      1075 i~~~---~lR~~i~~V~Qdp--~Lf-~gTIreNl~~g~----~~~~d~e----i~~al~~a~l~~~I~~lp~gldt~vge 1140 (1253)
                      ++..   .+|++|+||+|+|  .++ ..||.+||.++.    +..+.++    +.++++.+++.+          .....
T Consensus        88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~  157 (331)
T PRK15079         88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR  157 (331)
T ss_pred             CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence            8754   3678999999999  477 479999986531    1233333    334444444421          12234


Q ss_pred             CCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeC
Q 000851         1141 RGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQ 1217 (1253)
Q Consensus      1141 ~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~ 1217 (1253)
                      ...+||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+  +.|+|+|||+++.+.. ||+|+||++
T Consensus       158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~  237 (331)
T PRK15079        158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL  237 (331)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence            4568999999999999999999999999999999999999999999998753  7899999999999976 999999999


Q ss_pred             CEEEEecChhHHhhcccchHHHH
Q 000851         1218 GKVAEIGSHEQLLRKENGIYKQL 1240 (1253)
Q Consensus      1218 G~ive~Gt~~eLl~~~~g~y~~L 1240 (1253)
                      |+|+|.|+++++++++...|.+.
T Consensus       238 G~ive~g~~~~i~~~~~~py~~~  260 (331)
T PRK15079        238 GHAVELGTYDEVYHNPLHPYTKA  260 (331)
T ss_pred             CEEEEEcCHHHHHcCCCCHHHHH
Confidence            99999999999987655666653

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.7e-42  Score=382.69  Aligned_cols=218  Identities=31%  Similarity=0.533  Sum_probs=184.6

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC---------
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--------- 1076 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~--------- 1076 (1253)
                      |+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++         
T Consensus         1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   77 (252)
T TIGR03005         1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA   77 (252)
T ss_pred             CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence            579999999973   46999999999999999999999999999999999999999999999999987653         


Q ss_pred             ----HHHHhcceEEEccCCCccc-ccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 000851         1077 ----LRSLRRKIGLVQQEPALFS-TTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ 1144 (1253)
Q Consensus      1077 ----~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~---~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1144 (1253)
                          ...+|++++|++|++.+|. .|++||+.++..   ...    ++++.++++..++.++           ......+
T Consensus        78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~  146 (252)
T TIGR03005        78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ  146 (252)
T ss_pred             chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence                2467899999999999885 799999987421   111    2334455555554443           3344568


Q ss_pred             CChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEE
Q 000851         1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1221 (1253)
Q Consensus      1145 LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~iv 1221 (1253)
                      ||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+  ++|+|+|||+++.+.. ||++++|++|+++
T Consensus       147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~  226 (252)
T TIGR03005       147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV  226 (252)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999998753  7899999999999865 9999999999999


Q ss_pred             EecChhHHhhcccchH
Q 000851         1222 EIGSHEQLLRKENGIY 1237 (1253)
Q Consensus      1222 e~Gt~~eLl~~~~g~y 1237 (1253)
                      +.|+++++.+.....|
T Consensus       227 ~~g~~~~~~~~~~~~~  242 (252)
T TIGR03005       227 EQGKPDEIFRQPKEER  242 (252)
T ss_pred             EeCCHHHHhcCCCcHH
Confidence            9999999986544334

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=5.5e-42  Score=397.19  Aligned_cols=212  Identities=31%  Similarity=0.503  Sum_probs=183.2

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++|++++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++...+.  .+++|+
T Consensus         2 ~L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~   77 (353)
T PRK10851          2 SIEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG   77 (353)
T ss_pred             EEEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence            37899999999753  49999999999999999999999999999999999999999999999999976554  356899


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCC------CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          456 LVSQEPALFAT-SIANNILLGKED------AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~------~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      ||+|++.+|+. |++||+.|+...      .+    .+++.++++..++.++.           .....+||||||||++
T Consensus        78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QRva  146 (353)
T PRK10851         78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQRVA  146 (353)
T ss_pred             EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence            99999999975 999999987431      12    23444455555544443           3445689999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |||||+.+|++||||||||+||+.++..+.+.|+++.+  ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~  226 (353)
T PRK10851        147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR  226 (353)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999998854  7899999999998765 89999999999999999999876


Q ss_pred             c
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      +
T Consensus       227 ~  227 (353)
T PRK10851        227 E  227 (353)
T ss_pred             C
Confidence            5

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=5.1e-42  Score=397.77  Aligned_cols=214  Identities=29%  Similarity=0.472  Sum_probs=185.1

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCC--cEEEECCeeCCCCCHHHHhc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS--GKILLDGHDLKSLQLKWLRE  452 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~--G~i~~~g~~~~~~~~~~~r~  452 (1253)
                      +.|+++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++  |+|.++|.++.+.+.  .++
T Consensus         4 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r   79 (362)
T TIGR03258         4 GGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR   79 (362)
T ss_pred             eEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence            57999999999974  349999999999999999999999999999999999999999  999999999976655  356


Q ss_pred             ccEEEeccCccCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 000851          453 QMGLVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       453 ~i~~v~Q~~~lf~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriai  525 (1253)
                      .||||+|++.+|.. |++|||.|+...  .+.    +++.++++..++.++..           ....+||||||||+||
T Consensus        80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvaL  148 (362)
T TIGR03258        80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-----------HLPAQLSGGMQQRIAI  148 (362)
T ss_pred             CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-----------CChhhCCHHHHHHHHH
Confidence            89999999999966 999999987421  122    23445555555544444           4445899999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC---CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS---NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ||||+.+|++||||||||+||+.+...+.+.|+++.+   |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~  228 (362)
T TIGR03258       149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD  228 (362)
T ss_pred             HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999999999999999999999999998754   6899999999999765 89999999999999999999976


Q ss_pred             cC
Q 000851          602 KG  603 (1253)
Q Consensus       602 ~~  603 (1253)
                      +.
T Consensus       229 ~p  230 (362)
T TIGR03258       229 AP  230 (362)
T ss_pred             Cc
Confidence            53

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=1.7e-41  Score=367.97  Aligned_cols=202  Identities=37%  Similarity=0.630  Sum_probs=180.6

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      +.++++|++++|++....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   84 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL   84 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            56999999999975333599999999999999999999999999999999999999999999999999888888888999


Q ss_pred             EEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000851          455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK  534 (1253)
Q Consensus       455 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~  534 (1253)
                      +||+|+|.+|++|++||+.+... ...+++.++++                  +++++.+||||||||++||||++.+|+
T Consensus        85 ~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~  145 (207)
T cd03369          85 TIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR  145 (207)
T ss_pred             EEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999986542 33444433332                  245677899999999999999999999


Q ss_pred             EEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeC
Q 000851          535 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT  595 (1253)
Q Consensus       535 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~  595 (1253)
                      ++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus       146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH  206 (207)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence            9999999999999999999999999877899999999999998899999999999998875

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-41  Score=386.05  Aligned_cols=217  Identities=33%  Similarity=0.546  Sum_probs=183.7

Q ss_pred             EEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCC--HHHHh
Q 000851          377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ--LKWLR  451 (1253)
Q Consensus       377 i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--~~~~r  451 (1253)
                      |+++||+|+|++..   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+  ...++
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR   82 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence            78999999997421   34999999999999999999999999999999999999999999999999997653  45678


Q ss_pred             cccEEEeccC--ccCcccHHHHHhcCCC--CCCHHH----HHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 000851          452 EQMGLVSQEP--ALFATSIANNILLGKE--DASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI  523 (1253)
Q Consensus       452 ~~i~~v~Q~~--~lf~~ti~~ni~~g~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qri  523 (1253)
                      ++||||+|+|  .+|+.|++||+.++..  ..+.++    +.++++..++.         +.+.....+.+||||||||+
T Consensus        83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv  153 (287)
T PRK13637         83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV  153 (287)
T ss_pred             hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence            8999999998  5788899999998642  123332    33344433332         11345566789999999999


Q ss_pred             HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhh
Q 000851          524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       524 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      +|||||+.+|++|||||||++||+.+...+.+.|+++.+  |+|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus       154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13637        154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF  233 (287)
T ss_pred             HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999999999999999999999999999999999998853  789999999999885 59999999999999999998876


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      +.
T Consensus       234 ~~  235 (287)
T PRK13637        234 KE  235 (287)
T ss_pred             hC
Confidence            53

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=377.04  Aligned_cols=215  Identities=34%  Similarity=0.560  Sum_probs=185.6

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .++++|++|+|+++  .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~   80 (241)
T PRK14250          3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG   80 (241)
T ss_pred             eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence            48999999999743  4999999999999999999999999999999999999999999999999998777778888999


Q ss_pred             EEeccCccCcccHHHHHhcCCCCC--CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          456 LVSQEPALFATSIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       456 ~v~Q~~~lf~~ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      |++|++.+|+.|++||+.++....  ..+++.+.++..++.+          ......+.+||||||||++||||++.+|
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~p  150 (241)
T PRK14250         81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANNP  150 (241)
T ss_pred             EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            999999999899999998764321  1223334444433321          1234556789999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          534 KILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ++|||||||++||+.+.+.+.+.|+++.  .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (241)
T PRK14250        151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN  222 (241)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999875  37999999999999875 899999999999999999998764

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=7.4e-42  Score=385.23  Aligned_cols=224  Identities=27%  Similarity=0.473  Sum_probs=187.6

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH---HHh
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLR 1081 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~---~lR 1081 (1253)
                      -|+++||+++|+   +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..   .+|
T Consensus         7 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   83 (269)
T PRK11831          7 LVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR   83 (269)
T ss_pred             eEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence            489999999996   34699999999999999999999999999999999999999999999999998876643   357


Q ss_pred             cceEEEccCCCcccc-cHHHHhccCCC---CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1082 RKIGLVQQEPALFST-TIYENIKYGNE---DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~g-TIreNl~~g~~---~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      ++++|+||++.+|++ |++||+.++..   ..+.    +.+.++++..++.+.           ......+||||||||+
T Consensus        84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv  152 (269)
T PRK11831         84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARRA  152 (269)
T ss_pred             hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence            889999999999986 99999976421   1122    223334444444332           2333467999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      +|||||+++|++|||||||++||+.+.+.+.+.|++..+  ++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus       153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (269)
T PRK11831        153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ  232 (269)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999999998753  7899999999999866 9999999999999999999998


Q ss_pred             hcccchHHHHHH
Q 000851         1231 RKENGIYKQLIR 1242 (1253)
Q Consensus      1231 ~~~~g~y~~L~~ 1242 (1253)
                      +.....++.++.
T Consensus       233 ~~~~~~~~~~~~  244 (269)
T PRK11831        233 ANPDPRVRQFLD  244 (269)
T ss_pred             cCCcHHHHHHHH
Confidence            744444555654

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-41  Score=383.45  Aligned_cols=221  Identities=32%  Similarity=0.524  Sum_probs=188.2

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCC--CC
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LN 1076 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~--i~ 1076 (1253)
                      ..|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .+
T Consensus        12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~   88 (269)
T PRK14259         12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD   88 (269)
T ss_pred             ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence            35999999999963   469999999999999999999999999999999999998     689999999999863  56


Q ss_pred             HHHHhcceEEEccCCCcccccHHHHhccCCCC--C---CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNED--A---SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1077 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~--~---~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      ...+|++++||||++.+|+.|++||+.++...  .   .++++.++++.+++...       ++........+|||||||
T Consensus        89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q  161 (269)
T PRK14259         89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQ  161 (269)
T ss_pred             HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHH
Confidence            67789999999999999999999999875321  1   12345555666655332       223344455789999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeC-----------CE
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQ-----------GK 1219 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~-----------G~ 1219 (1253)
                      |++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++           |+
T Consensus       162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~  241 (269)
T PRK14259        162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY  241 (269)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence            999999999999999999999999999999999999998778899999999999865 999999996           67


Q ss_pred             EEEecChhHHhhccc
Q 000851         1220 VAEIGSHEQLLRKEN 1234 (1253)
Q Consensus      1220 ive~Gt~~eLl~~~~ 1234 (1253)
                      ++|.|++++++..+.
T Consensus       242 ~~~~~~~~~~~~~~~  256 (269)
T PRK14259        242 LVEFNETKKIFNSPK  256 (269)
T ss_pred             EEEeCCHHHHHhCcC
Confidence            999999999986443

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8e-42  Score=389.30  Aligned_cols=217  Identities=29%  Similarity=0.464  Sum_probs=182.4

Q ss_pred             EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCC---------
Q 000851         1006 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT--------- 1074 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~--------- 1074 (1253)
                      |+++||+++|+...  ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..         
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK   82 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence            88999999997432  2369999999999999999999999999999999999999999999999887632         


Q ss_pred             ---------------CCHHHHhcceEEEccCC--CcccccHHHHhccCCC--CCCHH----HHHHHHHHhcHHHHHHhCC
Q 000851         1075 ---------------LNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEI----ELMKATKAANAHGFISRMP 1131 (1253)
Q Consensus      1075 ---------------i~~~~lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d~----ei~~al~~a~l~~~I~~lp 1131 (1253)
                                     .+...+|++||||||+|  .+|..|++|||.++..  ..+.+    ++.++++.+++..      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------  156 (305)
T PRK13651         83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------  156 (305)
T ss_pred             cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence                           13457889999999986  6888999999987632  22332    3444555554421      


Q ss_pred             CCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhh-cc
Q 000851         1132 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NA 1209 (1253)
Q Consensus      1132 ~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~ 1209 (1253)
                          ........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +|+|||+|||+++.+. .|
T Consensus       157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a  232 (305)
T PRK13651        157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT  232 (305)
T ss_pred             ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence                12334557899999999999999999999999999999999999999999999874 4899999999999875 59


Q ss_pred             CEEEEEeCCEEEEecChhHHhhc
Q 000851         1210 DKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1210 D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      |||++|++|++++.|+++++.+.
T Consensus       233 drv~vl~~G~i~~~g~~~~~~~~  255 (305)
T PRK13651        233 KRTIFFKDGKIIKDGDTYDILSD  255 (305)
T ss_pred             CEEEEEECCEEEEECCHHHHhcC
Confidence            99999999999999999998764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=6.1e-42  Score=372.70  Aligned_cols=203  Identities=29%  Similarity=0.494  Sum_probs=177.1

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++||+++|+.   .++|+|+||+|++| ++||+||||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++
T Consensus         1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~   75 (211)
T cd03264           1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG   75 (211)
T ss_pred             CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence            579999999963   36999999999999 99999999999999999999999999999999999998766 67899999


Q ss_pred             EEccCCCcccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |+||+|.+|.+ |++||+.+...  ..+    ++++.++++..++.++.+       +    ...+||||||||++||||
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrv~la~a  144 (211)
T cd03264          76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------K----KIGSLSGGMRRRVGIAQA  144 (211)
T ss_pred             EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------C----chhhCCHHHHHHHHHHHH
Confidence            99999999986 99999976311  111    234566677777655432       2    235799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      |+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus       145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999999999998777999999999999965 9999999999999865

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.2e-42  Score=388.33  Aligned_cols=216  Identities=28%  Similarity=0.508  Sum_probs=182.7

Q ss_pred             EEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCC----CCHHH
Q 000851          377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----LQLKW  449 (1253)
Q Consensus       377 i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~  449 (1253)
                      |+++||+|+|+...   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++..    .+...
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   81 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP   81 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence            78999999997432   249999999999999999999999999999999999999999999999999863    33567


Q ss_pred             HhcccEEEeccC--ccCcccHHHHHhcCCCC--CCHHH----HHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          450 LREQMGLVSQEP--ALFATSIANNILLGKED--ASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       450 ~r~~i~~v~Q~~--~lf~~ti~~ni~~g~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      +|+.||||+|+|  .+|..|+.||+.|+...  .+.++    +.++++..++.          +........+|||||||
T Consensus        82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----------~~~~~~~~~~LSgGqkq  151 (288)
T PRK13643         82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA----------DEFWEKSPFELSGGQMR  151 (288)
T ss_pred             HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhhccCCcccCCHHHHH
Confidence            888999999998  78889999999987532  22222    33333333331          11234556789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      |++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus       152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~  231 (288)
T PRK13643        152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV  231 (288)
T ss_pred             HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999999875 4899999999999885 5999999999999999999988


Q ss_pred             hhc
Q 000851          600 ISK  602 (1253)
Q Consensus       600 ~~~  602 (1253)
                      ..+
T Consensus       232 ~~~  234 (288)
T PRK13643        232 FQE  234 (288)
T ss_pred             HcC
Confidence            653

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=1.1e-41  Score=377.09  Aligned_cols=216  Identities=31%  Similarity=0.553  Sum_probs=182.9

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      ++++|++++|+   +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus         2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~   77 (236)
T TIGR03864         2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG   77 (236)
T ss_pred             EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence            78999999996   346999999999999999999999999999999999999999999999999998766544 46899


Q ss_pred             EEccCCCc-ccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000851         1086 LVQQEPAL-FSTTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162 (1253)
Q Consensus      1086 ~V~Qdp~L-f~gTIreNl~~g~~--~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~ 1162 (1253)
                      |+||++.+ +..|+++|+.++..  ..+.++..     ..+.++++.+  |++........+||||||||++|||||+++
T Consensus        78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~  150 (236)
T TIGR03864        78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR  150 (236)
T ss_pred             EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999987 46799999986432  12222111     1123334433  444445566678999999999999999999


Q ss_pred             CCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhhc
Q 000851         1163 PSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1163 p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      |++|||||||++||+.+.+.+.+.|++..  +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus       151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA  222 (236)
T ss_pred             CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence            99999999999999999999999999875  37899999999999988999999999999999999999863

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.6e-42  Score=378.11  Aligned_cols=210  Identities=29%  Similarity=0.476  Sum_probs=178.1

Q ss_pred             cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---H
Q 000851         1005 NIELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---L 1080 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~---l 1080 (1253)
                      .++++||+++|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++..++...   +
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   84 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL   84 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence            389999999997422 246999999999999999999999999999999999999999999999999998887654   3


Q ss_pred             h-cceEEEccCCCcccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000851         1081 R-RKIGLVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1081 R-~~i~~V~Qdp~Lf~g-TIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQr 1152 (1253)
                      | ++++|+||++.+|+. |++||+.++..  ..+    ++++.++++..++           +........+||||||||
T Consensus        85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG~~qr  153 (233)
T PRK11629         85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL-----------EHRANHRPSELSGGERQR  153 (233)
T ss_pred             HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHH
Confidence            3 689999999999875 99999986311  111    2234445554444           333344456899999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhccCEEEEEeCCEEEEecC
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1225 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt 1225 (1253)
                      ++||||++.+|+||||||||++||+.+.+.+.+.|++..  +|+|+|+|||+++.+..+|++++|++|++++.|+
T Consensus       154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence            999999999999999999999999999999999999874  4799999999999999899999999999998775

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-42  Score=367.54  Aligned_cols=217  Identities=32%  Similarity=0.577  Sum_probs=189.5

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCc---cCCCCCHHHHh
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY---DIRTLNLRSLR 1081 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~---di~~i~~~~lR 1081 (1253)
                      .|+++|++..|+   ..++++||||+|+.||.+|+.||||||||||+++|.|+..|++|.|.+||.   |.++.+  .-.
T Consensus         2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~   76 (345)
T COG1118           2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD   76 (345)
T ss_pred             ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence            378899999986   456899999999999999999999999999999999999999999999999   776633  334


Q ss_pred             cceEEEccCCCccc-ccHHHHhccCCC----C----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000851         1082 RKIGLVQQEPALFS-TTIYENIKYGNE----D----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~----~----~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQr 1152 (1253)
                      ++||+|+|+..||. .||++||+||.+    .    .....+.+.++.+++..+-++-|           .+||||||||
T Consensus        77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR  145 (345)
T COG1118          77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR  145 (345)
T ss_pred             cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence            78999999999986 699999999962    1    12345566677777776666655           6899999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      +||||||..+|++||||||.++||+.-.+.+.+-|++...  +.|++.|||+.+++.. ||||+||++|+|...|+|+|.
T Consensus       146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence            9999999999999999999999999999999999998753  8999999999998855 999999999999999999999


Q ss_pred             hhcccchH
Q 000851         1230 LRKENGIY 1237 (1253)
Q Consensus      1230 l~~~~g~y 1237 (1253)
                      ...+++.|
T Consensus       226 ~~~P~s~f  233 (345)
T COG1118         226 YDHPASRF  233 (345)
T ss_pred             hcCCCccc
Confidence            88777655

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-42  Score=383.91  Aligned_cols=222  Identities=31%  Similarity=0.542  Sum_probs=187.6

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCCCC--HH
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRTLN--LR 1078 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~i~--~~ 1078 (1253)
                      =+++||+++|+   +.++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.++|.++...+  ..
T Consensus         6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   82 (251)
T PRK14244          6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV   82 (251)
T ss_pred             EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence            47899999996   3469999999999999999999999999999999999986     47999999999987653  34


Q ss_pred             HHhcceEEEccCCCcccccHHHHhccCCC--C------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1079 SLRRKIGLVQQEPALFSTTIYENIKYGNE--D------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1079 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      .+|++++||||++.+|++|++||+.++..  .      ..++++.++++..++.+++       .+.++..+.+||||||
T Consensus        83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~  155 (251)
T PRK14244         83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ  155 (251)
T ss_pred             HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence            67899999999999999999999986421  1      1123445556666554322       1234455678999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (251)
T PRK14244        156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI  235 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999865 999999999999999999999


Q ss_pred             hhcccchH
Q 000851         1230 LRKENGIY 1237 (1253)
Q Consensus      1230 l~~~~g~y 1237 (1253)
                      ++.+...|
T Consensus       236 ~~~~~~~~  243 (251)
T PRK14244        236 FKNPQSSK  243 (251)
T ss_pred             hcCCCChH
Confidence            87554444

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=8.9e-42  Score=379.63  Aligned_cols=212  Identities=36%  Similarity=0.608  Sum_probs=180.8

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCC---HHHHhcc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLREQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~~  453 (1253)
                      ++++||+++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+   ...+++.
T Consensus         1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (241)
T cd03256           1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ   79 (241)
T ss_pred             CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence            4789999999741 34999999999999999999999999999999999999999999999999998766   4567889


Q ss_pred             cEEEeccCccCc-ccHHHHHhcCCCCC-----------C---HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChH
Q 000851          454 MGLVSQEPALFA-TSIANNILLGKEDA-----------S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG  518 (1253)
Q Consensus       454 i~~v~Q~~~lf~-~ti~~ni~~g~~~~-----------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG  518 (1253)
                      ++|++|++.+|. .|++||+.++....           .   .+++.++++..           |+.......+.+||||
T Consensus        80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G  148 (241)
T cd03256          80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-----------GLLDKAYQRADQLSGG  148 (241)
T ss_pred             cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-----------CChhhhCCCcccCCHH
Confidence            999999998887 59999998754210           1   11222333333           3444455667799999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeC
Q 000851          519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGT  595 (1253)
Q Consensus       519 q~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~  595 (1253)
                      ||||++||||++.+|++||||||||+||+.+.+.+.+.|+++.  .|+|+|++||+++.+. .||++++|++|++++.|+
T Consensus       149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~  228 (241)
T cd03256         149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP  228 (241)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence            9999999999999999999999999999999999999999875  3799999999999998 589999999999999999


Q ss_pred             cchhh
Q 000851          596 HVDLI  600 (1253)
Q Consensus       596 ~~~l~  600 (1253)
                      ++++.
T Consensus       229 ~~~~~  233 (241)
T cd03256         229 PAELT  233 (241)
T ss_pred             HHHhh
Confidence            88763

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=1.1e-41  Score=377.86  Aligned_cols=211  Identities=31%  Similarity=0.521  Sum_probs=179.3

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++||+++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .+++++|
T Consensus         3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~   78 (239)
T cd03296           3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF   78 (239)
T ss_pred             EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence            789999999975  349999999999999999999999999999999999999999999999999875543  2568999


Q ss_pred             EeccCccCc-ccHHHHHhcCCCCC------CH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 000851          457 VSQEPALFA-TSIANNILLGKEDA------SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       457 v~Q~~~lf~-~ti~~ni~~g~~~~------~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriai  525 (1253)
                      |+|+|.+|. .|++||+.++....      ..    +++.++++..+           ++........+||||||||++|
T Consensus        79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~l  147 (239)
T cd03296          79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-----------LDWLADRYPAQLSGGQRQRVAL  147 (239)
T ss_pred             EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHHHH
Confidence            999999986 59999998864211      11    12333344443           3333444556899999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||||+.+|++|||||||++||+++.+.+.+.|.++.+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  227 (239)
T cd03296         148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH  227 (239)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence            9999999999999999999999999999999998853  7899999999998765 899999999999999999888654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=8.4e-42  Score=374.28  Aligned_cols=211  Identities=24%  Similarity=0.429  Sum_probs=178.3

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++||++.|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~   79 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY   79 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence            578999999975223499999999999999999999999999999999999999999999999998654 3566788999


Q ss_pred             EeccCccC-cccHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALF-ATSIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf-~~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      |+|++.+| ..|++||+.++..  ....    +++.++++..++.+           .......+||||||||++||||+
T Consensus        80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al  148 (220)
T cd03263          80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-----------KANKRARTLSGGMKRKLSLAIAL  148 (220)
T ss_pred             ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhChhhhCCHHHHHHHHHHHHH
Confidence            99999988 4699999987421  1111    22334444443332           23344568999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchh
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      +.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            9999999999999999999999999999998778999999999999865 899999999999999988765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-41  Score=384.09  Aligned_cols=221  Identities=33%  Similarity=0.541  Sum_probs=189.5

Q ss_pred             cCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCC--C
Q 000851         1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--L 1075 (1253)
Q Consensus      1003 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~--i 1075 (1253)
                      .+.|+++||+++|+.   .++|+|+||+|++||.+||+|+||||||||+++|+|+++|     ++|+|.+||.++..  .
T Consensus        23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~   99 (272)
T PRK14236         23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV   99 (272)
T ss_pred             CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence            346999999999963   4699999999999999999999999999999999999984     89999999999865  3


Q ss_pred             CHHHHhcceEEEccCCCcccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChh
Q 000851         1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148 (1253)
Q Consensus      1076 ~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~-~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgG 1148 (1253)
                      +...+|++++|+||++.+|+.|++||+.++..  .. .    ++++.++++.+++.+.+.       +..+..+.+||||
T Consensus       100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G  172 (272)
T PRK14236        100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG  172 (272)
T ss_pred             CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence            45678999999999999999999999986521  11 1    233556666666544332       2345566789999


Q ss_pred             HHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 000851         1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1149 QkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      ||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus       173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~  252 (272)
T PRK14236        173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD  252 (272)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence            999999999999999999999999999999999999999998778999999999999865 9999999999999999999


Q ss_pred             HHhhcc
Q 000851         1228 QLLRKE 1233 (1253)
Q Consensus      1228 eLl~~~ 1233 (1253)
                      ++.+.+
T Consensus       253 ~~~~~~  258 (272)
T PRK14236        253 TLFTSP  258 (272)
T ss_pred             HHhcCC
Confidence            998643

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=8.9e-42  Score=398.83  Aligned_cols=221  Identities=25%  Similarity=0.493  Sum_probs=192.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      -++++|++++|++  ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...++++||
T Consensus         3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig   80 (402)
T PRK09536          3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA   80 (402)
T ss_pred             eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence            3889999999975  34999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             EEeccCcc-CcccHHHHHhcCCCCC----------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          456 LVSQEPAL-FATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       456 ~v~Q~~~l-f~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      ||+|++.+ |+.|++||+.+++...          ..+++.++++..++.++..           ....+||||||||++
T Consensus        81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv~  149 (402)
T PRK09536         81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRVL  149 (402)
T ss_pred             EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence            99999987 5679999999875211          1234566666666655443           334689999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+. .||++++|++|++++.|++++++..
T Consensus       150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~  229 (402)
T PRK09536        150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA  229 (402)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence            9999999999999999999999999999999999985 5789999999999995 4899999999999999999998764


Q ss_pred             CchHHHHH
Q 000851          603 GGEYAALV  610 (1253)
Q Consensus       603 ~~~y~~~~  610 (1253)
                       ....+.+
T Consensus       230 -~~l~~~~  236 (402)
T PRK09536        230 -DTLRAAF  236 (402)
T ss_pred             -HHHHHHh
Confidence             2344444

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=7.9e-42  Score=374.20  Aligned_cols=209  Identities=27%  Similarity=0.481  Sum_probs=179.9

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus         1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~   76 (220)
T cd03265           1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG   76 (220)
T ss_pred             CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence            578999999963   4699999999999999999999999999999999999999999999999988653 356788999


Q ss_pred             EEccCCCcccc-cHHHHhccCCC--CC----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGNE--DA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~~--~~----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |+||++.+|+. |+++|+.++..  ..    .++++.++++..++.++..+.           ..+||||||||++||||
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~a  145 (220)
T cd03265          77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARS  145 (220)
T ss_pred             EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence            99999998875 99999976311  11    123456666666665544332           35799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHc-C-CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ++.+|++|||||||++||+.+.+.+.+.|++.. + ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            999999999999999999999999999999875 3 7899999999999866 999999999999999998774

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=381.43  Aligned_cols=222  Identities=30%  Similarity=0.494  Sum_probs=187.0

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD--P---ISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~--p---~~G~I~idG~di~~--i~~ 1077 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++  |   ++|+|.+||.++..  .+.
T Consensus        12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~   88 (259)
T PRK14274         12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL   88 (259)
T ss_pred             eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence            4899999999973   469999999999999999999999999999999999997  3   58999999999864  445


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNED---ASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~---~~d~----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++|+||++.+|+.|++||+.++...   .+++    ++.++++..++.+++.       ......+.+||||||
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~  161 (259)
T PRK14274         89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ  161 (259)
T ss_pred             HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence            6788999999999999999999999865211   1222    2334455555443321       223445678999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  241 (259)
T PRK14274        162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM  241 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999865 999999999999999999999


Q ss_pred             hhcccch
Q 000851         1230 LRKENGI 1236 (1253)
Q Consensus      1230 l~~~~g~ 1236 (1253)
                      +++....
T Consensus       242 ~~~~~~~  248 (259)
T PRK14274        242 FSNPDDQ  248 (259)
T ss_pred             hhCCCCH
Confidence            7644433

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-41  Score=385.21  Aligned_cols=213  Identities=34%  Similarity=0.544  Sum_probs=186.6

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      ++++||+++|+.  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus         4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   81 (277)
T PRK13652          4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG   81 (277)
T ss_pred             EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence            789999999963  235999999999999999999999999999999999999999999999999998877788899999


Q ss_pred             EEccCC--CcccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1086 LVQQEP--ALFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1086 ~V~Qdp--~Lf~gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      ||+|+|  .+|+.|++||+.++..  ..+.    +.+.++++..++.++..+.           ...||||||||++|||
T Consensus        82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~lar  150 (277)
T PRK13652         82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIAG  150 (277)
T ss_pred             EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHHH
Confidence            999998  4788999999986421  1222    2355666666665554443           3579999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhh
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      ||+.+|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus       151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  227 (277)
T PRK13652        151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL  227 (277)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence            99999999999999999999999999999998753  789999999999985 599999999999999999999976

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-41  Score=397.09  Aligned_cols=219  Identities=31%  Similarity=0.538  Sum_probs=188.1

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcc
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~ 1083 (1253)
                      ..|+++|++++|+   +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.++...++  .|++
T Consensus        18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~   92 (377)
T PRK11607         18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP   92 (377)
T ss_pred             ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence            3599999999996   3468999999999999999999999999999999999999999999999999987664  5789


Q ss_pred             eEEEccCCCcccc-cHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1084 IGLVQQEPALFST-TIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~g-TIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      ++||+|++.+|+. |++|||.++..  ..+.    +++.++++..++.++.++           ...+||||||||+|||
T Consensus        93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRVaLA  161 (377)
T PRK11607         93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----------KPHQLSGGQRQRVALA  161 (377)
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence            9999999999975 99999998632  1222    344555566665544433           3357999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhcc
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1233 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~ 1233 (1253)
                      |||+++|++||||||||+||+.+.+.+.+.|++..  .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus       162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p  241 (377)
T PRK11607        162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP  241 (377)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence            99999999999999999999999999998888764  37899999999998754 9999999999999999999999866


Q ss_pred             cchHH
Q 000851         1234 NGIYK 1238 (1253)
Q Consensus      1234 ~g~y~ 1238 (1253)
                      ...|.
T Consensus       242 ~~~~~  246 (377)
T PRK11607        242 TTRYS  246 (377)
T ss_pred             ccHHH
Confidence            65544

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=382.51  Aligned_cols=220  Identities=30%  Similarity=0.491  Sum_probs=189.2

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCC--CC
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LN 1076 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~--i~ 1076 (1253)
                      ..|+++||+++|+   +.++|+|+||+|++||.+||+|+||||||||+++|.|+++     |++|+|.+||.++..  .+
T Consensus        19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   95 (267)
T PRK14237         19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN   95 (267)
T ss_pred             eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence            3699999999996   3469999999999999999999999999999999999997     579999999999864  34


Q ss_pred             HHHHhcceEEEccCCCcccccHHHHhccCCCC---CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhH
Q 000851         1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNED---AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 1149 (1253)
Q Consensus      1077 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~---~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQ 1149 (1253)
                      ...+|+.++||||++.+|+.|++||+.++...   .+    ++++.++++..++.+++.       ...+..+.+|||||
T Consensus        96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~  168 (267)
T PRK14237         96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ  168 (267)
T ss_pred             hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence            56789999999999999999999999875221   11    234555666666544332       33455667899999


Q ss_pred             HHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 000851         1150 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1150 kQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      |||++|||||+++|++|||||||++||+.+.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus       169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  248 (267)
T PRK14237        169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN  248 (267)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999998778999999999999855 99999999999999999999


Q ss_pred             Hhhcc
Q 000851         1229 LLRKE 1233 (1253)
Q Consensus      1229 Ll~~~ 1233 (1253)
                      +.+.+
T Consensus       249 ~~~~~  253 (267)
T PRK14237        249 IFTNP  253 (267)
T ss_pred             HhcCC
Confidence            97643

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-41  Score=382.13  Aligned_cols=223  Identities=30%  Similarity=0.505  Sum_probs=187.1

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCCCC--H
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTLN--L 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~i~--~ 1077 (1253)
                      .|+++|++++|+   +.++|+|+||+|++||++||+|+||||||||+++|.|+++|     ++|+|.+||.++...+  .
T Consensus        12 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   88 (258)
T PRK14268         12 QIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV   88 (258)
T ss_pred             eEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence            599999999996   34699999999999999999999999999999999999985     7999999999986532  4


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      ..+|+.++|+||++.+|+.|++||+.++..  ..+.    +++.++++.+++.+.+       +.........|||||||
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q  161 (258)
T PRK14268         89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ  161 (258)
T ss_pred             HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence            567889999999999999999999986421  1222    2344555555543221       12233445679999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      |++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus       162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  241 (258)
T PRK14268        162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF  241 (258)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999999999988778999999999999865 9999999999999999999998


Q ss_pred             hcccchH
Q 000851         1231 RKENGIY 1237 (1253)
Q Consensus      1231 ~~~~g~y 1237 (1253)
                      +++...|
T Consensus       242 ~~~~~~~  248 (258)
T PRK14268        242 HNPREKS  248 (258)
T ss_pred             cCCCCHH
Confidence            6444433

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8e-42  Score=381.98  Aligned_cols=224  Identities=31%  Similarity=0.495  Sum_probs=186.8

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~--i~~ 1077 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~   80 (251)
T PRK14251          4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL   80 (251)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence            4899999999963   469999999999999999999999999999999999997     479999999999864  344


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCCC--C-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNED--A-----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~--~-----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|+.++|++|++.+|+.|++||+.++...  .     .++++.++++..+++...       .........+||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~  153 (251)
T PRK14251         81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ  153 (251)
T ss_pred             HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence            5678899999999999999999999865311  1     122344455555543211       1122345578999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14251        154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM  233 (251)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778899999999999866 999999999999999999999


Q ss_pred             hhcccchHH
Q 000851         1230 LRKENGIYK 1238 (1253)
Q Consensus      1230 l~~~~g~y~ 1238 (1253)
                      ...+...|.
T Consensus       234 ~~~~~~~~~  242 (251)
T PRK14251        234 FIAPKKQIT  242 (251)
T ss_pred             HhCCCCHHH
Confidence            764433343

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.8e-42  Score=384.00  Aligned_cols=221  Identities=30%  Similarity=0.459  Sum_probs=190.8

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus        11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   87 (265)
T PRK10575         11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV   87 (265)
T ss_pred             eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence            5999999999963   4699999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEccCCCcccc-cHHHHhccCCC----------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNE----------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~----------~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      +|+||++.++.+ |++||+.++..          ...++++.++++.+++.+++.+.|           .+||||||||+
T Consensus        88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv  156 (265)
T PRK10575         88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA  156 (265)
T ss_pred             EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence            999999877664 99999987521          112345667777777765544332           47999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-C-CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      +|||||+.+|+||||||||++||+.+.+.+.+.|++.. + ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  236 (265)
T PRK10575        157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM  236 (265)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence            99999999999999999999999999999999999874 2 7899999999999865 9999999999999999999987


Q ss_pred             hcccchHHHHH
Q 000851         1231 RKENGIYKQLI 1241 (1253)
Q Consensus      1231 ~~~~g~y~~L~ 1241 (1253)
                      +.  ..+..++
T Consensus       237 ~~--~~~~~~~  245 (265)
T PRK10575        237 RG--ETLEQIY  245 (265)
T ss_pred             CH--HHHHHHh
Confidence            52  3344444

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-41  Score=383.78  Aligned_cols=219  Identities=30%  Similarity=0.509  Sum_probs=185.0

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~--i~~ 1077 (1253)
                      .|+++|++++|+   +.++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .+.
T Consensus        21 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   97 (268)
T PRK14248         21 ILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV   97 (268)
T ss_pred             eEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence            599999999996   3469999999999999999999999999999999999875     789999999999865  344


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC---CC----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE---DA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~---~~----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++|+||++.+|++|++||+.++..   ..    .++.+.++++..++.+.+       ....+....+||||||
T Consensus        98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~  170 (268)
T PRK14248         98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQ  170 (268)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHH
Confidence            567899999999999999999999986421   10    122344555555443211       1223455678999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  250 (268)
T PRK14248        171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI  250 (268)
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998777899999999998865 999999999999999999999


Q ss_pred             hhcc
Q 000851         1230 LRKE 1233 (1253)
Q Consensus      1230 l~~~ 1233 (1253)
                      ..+.
T Consensus       251 ~~~~  254 (268)
T PRK14248        251 FTSP  254 (268)
T ss_pred             HhCC
Confidence            8643

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-41  Score=380.22  Aligned_cols=219  Identities=29%  Similarity=0.442  Sum_probs=185.5

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCC--CCH
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL  447 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~  447 (1253)
                      .-|+++|++++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  .+.
T Consensus         6 ~~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          6 AIIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             ceEEEeeeEEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence            359999999999743  499999999999999999999999999999999999997     49999999999853  345


Q ss_pred             HHHhcccEEEeccCccCcccHHHHHhcCCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHH
Q 000851          448 KWLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK  520 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~  520 (1253)
                      ..+|+.|+|++|++.+|+.|++|||.++....   .    .+++.++++..++.+.+   ++.+    ...+.+||||||
T Consensus        84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~----~~~~~~LSgG~~  156 (254)
T PRK14273         84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKL----NTNALSLSGGQQ  156 (254)
T ss_pred             HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHH----hCCcccCCHHHH
Confidence            56788999999999999899999999864211   1    23344555555443222   2223    345678999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchh
Q 000851          521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       521 qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      ||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  236 (254)
T PRK14273        157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL  236 (254)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999999778999999999999865 899999999999999999998


Q ss_pred             hhc
Q 000851          600 ISK  602 (1253)
Q Consensus       600 ~~~  602 (1253)
                      .+.
T Consensus       237 ~~~  239 (254)
T PRK14273        237 FFN  239 (254)
T ss_pred             HhC
Confidence            754

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-41  Score=378.96  Aligned_cols=211  Identities=34%  Similarity=0.594  Sum_probs=179.2

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH---HHHhcc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLREQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~~  453 (1253)
                      |+++||+++|+. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+|++
T Consensus         2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR   80 (243)
T ss_pred             eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence            689999999972 2349999999999999999999999999999999999999999999999999876653   346788


Q ss_pred             cEEEeccCccCc-ccHHHHHhcCCCCC-----------C---HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChH
Q 000851          454 MGLVSQEPALFA-TSIANNILLGKEDA-----------S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG  518 (1253)
Q Consensus       454 i~~v~Q~~~lf~-~ti~~ni~~g~~~~-----------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG  518 (1253)
                      ++||+|++.+|. .|++||+.++....           .   .+++.++++..           |++......+.+||||
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG  149 (243)
T TIGR02315        81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-----------GLADKAYQRADQLSGG  149 (243)
T ss_pred             eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCHH
Confidence            999999999886 59999998764211           1   11223333333           4444445566799999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeC
Q 000851          519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT  595 (1253)
Q Consensus       519 q~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~  595 (1253)
                      ||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.  .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus       150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~  229 (243)
T TIGR02315       150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA  229 (243)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence            9999999999999999999999999999999999999999874  37899999999999855 89999999999999999


Q ss_pred             cchh
Q 000851          596 HVDL  599 (1253)
Q Consensus       596 ~~~l  599 (1253)
                      ++++
T Consensus       230 ~~~~  233 (243)
T TIGR02315       230 PSEL  233 (243)
T ss_pred             HHHh
Confidence            8886

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-41  Score=378.95  Aligned_cols=217  Identities=31%  Similarity=0.520  Sum_probs=184.7

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCC-----CcEEEECCeeCCCC--CHHH
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKSL--QLKW  449 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~~--~~~~  449 (1253)
                      ++++||+++|++.  .+|+|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.++|.++...  +...
T Consensus         2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~   79 (247)
T TIGR00972         2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE   79 (247)
T ss_pred             EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence            7899999999753  4999999999999999999999999999999999999998     99999999998753  4556


Q ss_pred             HhcccEEEeccCccCcccHHHHHhcCCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          450 LREQMGLVSQEPALFATSIANNILLGKED---ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       450 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      +++.|+|++|++.+|+.|++||+.++...   .+.    +++.++++..++.+++.       ........+||||||||
T Consensus        80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr  152 (247)
T TIGR00972        80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR  152 (247)
T ss_pred             HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence            78899999999999999999999875321   111    23444455554432221       23455667899999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (247)
T TIGR00972       153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT  232 (247)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999998777899999999998865 89999999999999999988865


Q ss_pred             c
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      .
T Consensus       233 ~  233 (247)
T TIGR00972       233 N  233 (247)
T ss_pred             C
Confidence            3

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=4.4e-42  Score=371.98  Aligned_cols=199  Identities=30%  Similarity=0.560  Sum_probs=173.3

Q ss_pred             EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEE
Q 000851         1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 1086 (1253)
Q Consensus      1007 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1086 (1253)
                      +++||+++|+..  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..   ..+|++++|
T Consensus         1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~   75 (205)
T cd03226           1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY   75 (205)
T ss_pred             CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence            468999999631  469999999999999999999999999999999999999999999999998854   457789999


Q ss_pred             EccCC--CcccccHHHHhccCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000851         1087 VQQEP--ALFSTTIYENIKYGNEDA--SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162 (1253)
Q Consensus      1087 V~Qdp--~Lf~gTIreNl~~g~~~~--~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~ 1162 (1253)
                      +||+|  .+|+.|++||+.++.+..  .++++.++++..++.++..+.|           ..||||||||++|||||+++
T Consensus        76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~  144 (205)
T cd03226          76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG  144 (205)
T ss_pred             EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence            99998  467899999998754322  2346777777777766544433           47999999999999999999


Q ss_pred             CCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEE
Q 000851         1163 PSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1221 (1253)
Q Consensus      1163 p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~iv 1221 (1253)
                      |++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus       145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            99999999999999999999999999873 57899999999999975 9999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=9e-42  Score=373.51  Aligned_cols=207  Identities=25%  Similarity=0.488  Sum_probs=176.7

Q ss_pred             EEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1006 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      |+++||+++|+.+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence            689999999974311 269999999999999999999999999999999999999999999999999875 456778999


Q ss_pred             EEEccCCCcccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      +|+||+|.+|++ |++||+.+...  ..+    .+++.++++..++.+..           .....+||||||||++|||
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lar  149 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIAR  149 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHH
Confidence            999999999985 99999975321  111    23445555555554433           3445689999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      ||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus       150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            9999999999999999999999999999999875 48999999999999865 9999999999998865

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-41  Score=385.38  Aligned_cols=217  Identities=31%  Similarity=0.528  Sum_probs=188.8

Q ss_pred             cEEEEeEEEECCCCC---CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC-HHHH
Q 000851         1005 NIELRNVSFKYPVRP---DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-LRSL 1080 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~---~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~-~~~l 1080 (1253)
                      -|+++|++++|++..   .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   83 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI   83 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence            489999999997421   246999999999999999999999999999999999999999999999999987654 3567


Q ss_pred             hcceEEEccCCC--cccccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000851         1081 RRKIGLVQQEPA--LFSTTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1081 R~~i~~V~Qdp~--Lf~gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQr 1152 (1253)
                      |++++|+||+|.  +|..|+.+|+.++..  ..+    ++++.++++.+++.++..+.|           .+||||||||
T Consensus        84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr  152 (280)
T PRK13633         84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR  152 (280)
T ss_pred             hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence            899999999984  677799999987531  112    345667777777766655543           5799999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHh
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      ++|||||+++|++|||||||++||+.+.+.+.+.|+++.  .++|+|+|||+++.+..||++++|++|++++.|+++++.
T Consensus       153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence            999999999999999999999999999999999999874  388999999999999889999999999999999999997


Q ss_pred             hc
Q 000851         1231 RK 1232 (1253)
Q Consensus      1231 ~~ 1232 (1253)
                      +.
T Consensus       233 ~~  234 (280)
T PRK13633        233 KE  234 (280)
T ss_pred             cC
Confidence            63

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-41  Score=383.67  Aligned_cols=215  Identities=33%  Similarity=0.581  Sum_probs=186.4

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++|++++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus         7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i   85 (271)
T PRK13632          7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI   85 (271)
T ss_pred             EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence            48999999999632 34699999999999999999999999999999999999999999999999999887878899999


Q ss_pred             EEEccCC--CcccccHHHHhccCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1085 GLVQQEP--ALFSTTIYENIKYGNE--DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1085 ~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d~----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      +|+||+|  .++..|++||+.++..  ..+.+    .+.++++..++.++..+           ...+||||||||++||
T Consensus        86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la  154 (271)
T PRK13632         86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIA  154 (271)
T ss_pred             EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHH
Confidence            9999998  4567899999987521  12222    24455555565554433           3468999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhh
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||+++|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus       155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  231 (271)
T PRK13632        155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN  231 (271)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence            999999999999999999999999999999998753  489999999999988899999999999999999998876

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=9.9e-42  Score=376.88  Aligned_cols=216  Identities=29%  Similarity=0.463  Sum_probs=182.7

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-Hhcce
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRKI 1084 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~-lR~~i 1084 (1253)
                      |+++||+++|+   +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .|+++
T Consensus         1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   77 (232)
T cd03218           1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI   77 (232)
T ss_pred             CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence            47899999996   346999999999999999999999999999999999999999999999999998877655 45789


Q ss_pred             EEEccCCCcccc-cHHHHhccCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNED--ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 1161 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~~--~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr 1161 (1253)
                      +|+||++.+|++ |++||+.++.+.  ...++..     ..+.++++.+  |++........+||||||||++|||||+.
T Consensus        78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~  150 (232)
T cd03218          78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT  150 (232)
T ss_pred             EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999986 999999865321  1211111     1123334433  44444555667899999999999999999


Q ss_pred             CCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1162 NPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1162 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      +|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence            999999999999999999999999999875 47899999999988765 99999999999999999999865

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=379.84  Aligned_cols=224  Identities=33%  Similarity=0.561  Sum_probs=188.5

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCC--CC
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--LN 1076 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~--i~ 1076 (1253)
                      |.|+++||+++|++   .++++|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++..  .+
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~   78 (250)
T PRK14240          2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID   78 (250)
T ss_pred             CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            46899999999973   4699999999999999999999999999999999999863     68999999999875  45


Q ss_pred             HHHHhcceEEEccCCCcccccHHHHhccCCC--CC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhH
Q 000851         1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 1149 (1253)
Q Consensus      1077 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~-----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQ 1149 (1253)
                      ...+|++++|+||++.+|+.|+++|+.++..  ..     .++++.++++.+++.+.+.       ......+.+|||||
T Consensus        79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~  151 (250)
T PRK14240         79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ  151 (250)
T ss_pred             hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence            5678999999999999999999999987521  11     1234455555555433222       22344567899999


Q ss_pred             HHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 000851         1150 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1150 kQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      |||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus       152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~  231 (250)
T PRK14240        152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD  231 (250)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999998778999999999998865 99999999999999999999


Q ss_pred             HhhcccchH
Q 000851         1229 LLRKENGIY 1237 (1253)
Q Consensus      1229 Ll~~~~g~y 1237 (1253)
                      +.......+
T Consensus       232 ~~~~~~~~~  240 (250)
T PRK14240        232 LFTNPKDKR  240 (250)
T ss_pred             HHhCCCChH
Confidence            876444433

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=6.4e-42  Score=373.12  Aligned_cols=203  Identities=35%  Similarity=0.570  Sum_probs=172.0

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.  .++.++|
T Consensus         1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~   76 (213)
T cd03259           1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM   76 (213)
T ss_pred             CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence            478999999975  349999999999999999999999999999999999999999999999999876543  4678999


Q ss_pred             EeccCccCc-ccHHHHHhcCCCCC--CH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFA-TSIANNILLGKEDA--SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~-~ti~~ni~~g~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      |+|++.+|. .|++||+.++....  ..    +++.++++..++.+           .......+||||||||++|||||
T Consensus        77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~al  145 (213)
T cd03259          77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-----------LLNRYPHELSGGQQQRVALARAL  145 (213)
T ss_pred             EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHHHHHHH
Confidence            999998886 59999998763211  11    23334444444433           34444568999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEee
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g  594 (1253)
                      +.+|++|||||||++||+.+.+.+.+.|+++.  .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus       146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999999875  37899999999998765 8999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.2e-42  Score=381.09  Aligned_cols=221  Identities=30%  Similarity=0.522  Sum_probs=186.6

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc---CCC--CccEEEECCccCCCC--CH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF---YDP--ISGTVLIDGYDIRTL--NL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~---~~p--~~G~I~idG~di~~i--~~ 1077 (1253)
                      .|+++|++++|+.   .++|+|+||+|++||.+||+|+||||||||+++|.|+   ++|  ++|+|.+||.++...  +.
T Consensus         3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14245          3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV   79 (250)
T ss_pred             EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence            4899999999963   4699999999999999999999999999999999997   454  589999999998754  34


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCCC--C-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNED--A-----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~--~-----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++|+||++.+|+.|++||+.++...  .     .++++.++++..++.+++       ++.....+.+||||||
T Consensus        80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~  152 (250)
T PRK14245         80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ  152 (250)
T ss_pred             HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence            6788999999999999999999999864211  1     123345555555543332       2234456678999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~  232 (250)
T PRK14245        153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI  232 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999855 999999999999999999999


Q ss_pred             hhcccc
Q 000851         1230 LRKENG 1235 (1253)
Q Consensus      1230 l~~~~g 1235 (1253)
                      .+.+..
T Consensus       233 ~~~~~~  238 (250)
T PRK14245        233 FTNPEK  238 (250)
T ss_pred             hcCCCC
Confidence            864433

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-41  Score=386.78  Aligned_cols=219  Identities=32%  Similarity=0.595  Sum_probs=185.7

Q ss_pred             EEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCC----CHHH
Q 000851          377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLKW  449 (1253)
Q Consensus       377 i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~  449 (1253)
                      |+++||+|+|++..   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...    +...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP   82 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999997422   2499999999999999999999999999999999999999999999999998653    3456


Q ss_pred             HhcccEEEeccC--ccCcccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHhcCCCCccc-cccCCCCCCChHHHHHHH
Q 000851          450 LREQMGLVSQEP--ALFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       450 ~r~~i~~v~Q~~--~lf~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~~g~~LSgGq~qria  524 (1253)
                      +|++||||+|+|  .+|..|+.|||.++...  .+.++..+.     +.+.++.+  |+++ .....+.+||||||||++
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~  155 (286)
T PRK13646         83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA  155 (286)
T ss_pred             HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence            788999999997  68888999999987422  233332221     22334444  6653 445677899999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhhh
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |||||+.+|++|||||||++||+.+...+.+.|+++.  +|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus       156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  235 (286)
T PRK13646        156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK  235 (286)
T ss_pred             HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999999999999884  4799999999999985 589999999999999999988876


Q ss_pred             c
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      .
T Consensus       236 ~  236 (286)
T PRK13646        236 D  236 (286)
T ss_pred             C
Confidence            4

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-41  Score=381.09  Aligned_cols=218  Identities=29%  Similarity=0.509  Sum_probs=186.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCC--CCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~  448 (1253)
                      .|+++||+++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+..
T Consensus         6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (253)
T PRK14242          6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV   83 (253)
T ss_pred             EEEEeeeEEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence            58999999999743  49999999999999999999999999999999999975     689999999999864  3455


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+|+.|+|++|++.+|+.|++||+.++...  . .    .+++.++++..++.+++       .+..+..+.+|||||||
T Consensus        84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q  156 (253)
T PRK14242         84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQQ  156 (253)
T ss_pred             HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHHH
Confidence            778899999999999989999999875311  1 1    23445555555554332       22345667799999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14242        157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF  236 (253)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998778999999999999865 8999999999999999998886


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       237 ~~  238 (253)
T PRK14242        237 TR  238 (253)
T ss_pred             cC
Confidence            54

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=9.3e-42  Score=370.41  Aligned_cols=203  Identities=27%  Similarity=0.468  Sum_probs=178.5

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++||+++|+   +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...  ..+|++++
T Consensus         1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~   75 (208)
T cd03268           1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG   75 (208)
T ss_pred             CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence            47899999996   34699999999999999999999999999999999999999999999999998764  56788999


Q ss_pred             EEccCCCccc-ccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000851         1086 LVQQEPALFS-TTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~~--~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~ 1162 (1253)
                      ||||++.+|+ .|++||+.++..  ..+++++.++++..++.+...+           ....||||||||++||||++++
T Consensus        76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~  144 (208)
T cd03268          76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGN  144 (208)
T ss_pred             EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence            9999998884 799999976521  2345667778888877665443           2357999999999999999999


Q ss_pred             CCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1163 PSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1163 p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      |++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999865 47899999999999865 9999999999999865

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=1.7e-41  Score=367.08  Aligned_cols=200  Identities=36%  Similarity=0.583  Sum_probs=181.8

Q ss_pred             EEEEeEEEECCCCCC--cccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcc
Q 000851         1006 IELRNVSFKYPVRPD--ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~ 1083 (1253)
                      |+++||+++|++..+  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||             +
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~   67 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S   67 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence            479999999974311  3699999999999999999999999999999999999999999999999             6


Q ss_pred             eEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000851         1084 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p 1163 (1253)
                      |+|+||+|.+|++|++||+.++.. .++++..++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+.+|
T Consensus        68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p  146 (204)
T cd03250          68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA  146 (204)
T ss_pred             EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999998643 3456777888888999999999999999999999999999999999999999999


Q ss_pred             CEEEEecccCCCChHHHHHHHH-HHHHHc-CCceEEEEccCchhhhccCEEEEEeCCE
Q 000851         1164 SILLLDEATSALDTASENLIQE-ALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGK 1219 (1253)
Q Consensus      1164 ~ILlLDEaTS~LD~~te~~I~~-~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ 1219 (1253)
                      +++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||++++|++|+
T Consensus       147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            9999999999999999998887 456553 4789999999999998899999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-41  Score=386.32  Aligned_cols=216  Identities=29%  Similarity=0.489  Sum_probs=182.3

Q ss_pred             EEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCC----CCHHH
Q 000851          377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----LQLKW  449 (1253)
Q Consensus       377 i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~  449 (1253)
                      ++++|++|+|++..   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..    .+...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP   82 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999997421   349999999999999999999999999999999999999999999999999863    34556


Q ss_pred             HhcccEEEeccC--ccCcccHHHHHhcCCCC--CCHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          450 LREQMGLVSQEP--ALFATSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       450 ~r~~i~~v~Q~~--~lf~~ti~~ni~~g~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .|+.||||+|+|  .+|+.|++|||.++...  .+.+    ++.++++..++.+          ......+.+|||||||
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q  152 (290)
T PRK13634         83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR  152 (290)
T ss_pred             HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence            788999999998  68888999999987432  2222    2333444443321          1234556789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcch
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD  598 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~  598 (1253)
                      |++|||||+.+|++|||||||++||+.+...+.+.|+++.+  |.|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus       153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~  232 (290)
T PRK13634        153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE  232 (290)
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999998853  7899999999999864 89999999999999999988


Q ss_pred             hhhc
Q 000851          599 LISK  602 (1253)
Q Consensus       599 l~~~  602 (1253)
                      +.+.
T Consensus       233 ~~~~  236 (290)
T PRK13634        233 IFAD  236 (290)
T ss_pred             HhcC
Confidence            8654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=380.54  Aligned_cols=219  Identities=32%  Similarity=0.525  Sum_probs=185.2

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CccEEEECCccCCCC--CH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD--P---ISGTVLIDGYDIRTL--NL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~--p---~~G~I~idG~di~~i--~~ 1077 (1253)
                      .++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|.|+++  |   ++|+|.+||.++...  +.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14239          5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT   81 (252)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence            4899999999973   469999999999999999999999999999999999954  6   489999999998643  34


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC--C-C----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--D-A----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~-~----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++||||++.+|+.|++||+.++..  . .    .++++.++++.+++.+.+.       +..+....+||||||
T Consensus        82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~  154 (252)
T PRK14239         82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ  154 (252)
T ss_pred             HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence            567889999999999999999999986421  1 1    1233445555555543222       233455678999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T PRK14239        155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM  234 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998777999999999998865 999999999999999999999


Q ss_pred             hhcc
Q 000851         1230 LRKE 1233 (1253)
Q Consensus      1230 l~~~ 1233 (1253)
                      ++.+
T Consensus       235 ~~~~  238 (252)
T PRK14239        235 FMNP  238 (252)
T ss_pred             HhCC
Confidence            8643

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-41  Score=397.68  Aligned_cols=205  Identities=36%  Similarity=0.591  Sum_probs=177.3

Q ss_pred             ccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHH----hcceEEEccCCCccc-c
Q 000851         1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL----RRKIGLVQQEPALFS-T 1096 (1253)
Q Consensus      1022 ~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~l----R~~i~~V~Qdp~Lf~-g 1096 (1253)
                      ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+...+    |++++||+|++.+|+ .
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence            37999999999999999999999999999999999999999999999999998876554    468999999999997 5


Q ss_pred             cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000851         1097 TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170 (1253)
Q Consensus      1097 TIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDE 1170 (1253)
                      |++||+.++..  ..+    ++++.++++..++.++..+.|           .+||||||||++|||||+.+|+||||||
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE  190 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE  190 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            99999987521  111    234556666666655554433           5799999999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhcccchH
Q 000851         1171 ATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIY 1237 (1253)
Q Consensus      1171 aTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y 1237 (1253)
                      |||+||+.+.+.+++.|++..  .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|
T Consensus       191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~  260 (400)
T PRK10070        191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY  260 (400)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence            999999999999999999874  47899999999999865 99999999999999999999987554444

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=8.3e-41  Score=375.84  Aligned_cols=241  Identities=27%  Similarity=0.464  Sum_probs=203.9

Q ss_pred             HHHHHHHhccCCCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q 000851          347 ANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       347 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~  426 (1253)
                      +.+.+++..+++.+     +..+.+...+.|+++|+++..    .++|+|+||+|++||+++|+||||||||||+++|+|
T Consensus        15 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G   85 (282)
T cd03291          15 EGFGELLEKAKQEN-----NDRKHSSDDNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG   85 (282)
T ss_pred             HHHHHHHhcccccc-----cccccCCCCCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34556665544322     112223344679999999962    249999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccc
Q 000851          427 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQT  506 (1253)
Q Consensus       427 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t  506 (1253)
                      +++|++|+|.++|             .|+|++|++.+|+.|++||+.++... ...++.++++..++.+.+..+|.++++
T Consensus        86 l~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~  151 (282)
T cd03291          86 ELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNT  151 (282)
T ss_pred             CCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccc
Confidence            9999999999998             39999999999999999999987432 334556667777888999999999999


Q ss_pred             cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHcCCCeEEEEccCchhhhhcCEEEEE
Q 000851          507 QVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRAL-EKIMSNRTTIVVAHRLSTVRDVDTIMVL  585 (1253)
Q Consensus       507 ~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~l~~~~~~d~i~vl  585 (1253)
                      .+++.+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+ +.+.+++|+|++||+++.+..||++++|
T Consensus       152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l  231 (282)
T cd03291         152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL  231 (282)
T ss_pred             eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence            999999999999999999999999999999999999999999999888754 5666689999999999999889999999


Q ss_pred             eCCEEEEeeCcchhhhcCchHHHHH
Q 000851          586 KNGQVVESGTHVDLISKGGEYAALV  610 (1253)
Q Consensus       586 ~~G~i~~~g~~~~l~~~~~~y~~~~  610 (1253)
                      ++|++++.|+++++......|...+
T Consensus       232 ~~G~i~~~g~~~~~~~~~~~~~~~~  256 (282)
T cd03291         232 HEGSSYFYGTFSELQSLRPDFSSKL  256 (282)
T ss_pred             ECCEEEEECCHHHHHhcchHHHHHH
Confidence            9999999999999876555554433

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=1.3e-41  Score=378.31  Aligned_cols=221  Identities=27%  Similarity=0.447  Sum_probs=183.8

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-Hhcce
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRKI 1084 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~-lR~~i 1084 (1253)
                      |+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus         3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (242)
T TIGR03411         3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI   79 (242)
T ss_pred             EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence            789999999973   46999999999999999999999999999999999999999999999999998877654 45679


Q ss_pred             EEEccCCCcccc-cHHHHhccCCCCCCH--HH---HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNEDASE--IE---LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~~~~d--~e---i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      +|+||++.+|++ |++||+.++......  ..   .........+.++++.+  |++.........||||||||++||||
T Consensus        80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara  157 (242)
T TIGR03411        80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML  157 (242)
T ss_pred             eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence            999999999986 999999875321000  00   00000111223333333  34444455667899999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      ++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  231 (242)
T TIGR03411       158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA  231 (242)
T ss_pred             HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence            99999999999999999999999999999998778999999999999975 99999999999999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=1.7e-41  Score=375.10  Aligned_cols=214  Identities=36%  Similarity=0.555  Sum_probs=181.1

Q ss_pred             EEEEEEEEECCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH---HHh
Q 000851          377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLR  451 (1253)
Q Consensus       377 i~~~~v~f~y~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r  451 (1253)
                      |+++|++++|+++.  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   ..+
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR   81 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence            68999999997531  1599999999999999999999999999999999999999999999999999776543   347


Q ss_pred             cccEEEeccCccCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          452 EQMGLVSQEPALFA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       452 ~~i~~v~Q~~~lf~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      +.|+|++|++.+|. .|++||+.++...  ..    .+++.++++..+           ++........+||||||||++
T Consensus        82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~  150 (233)
T cd03258          82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVG-----------LEDKADAYPAQLSGGQKQRVG  150 (233)
T ss_pred             hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------ChhhhhcChhhCCHHHHHHHH
Confidence            78999999999997 5999999875321  11    123333444443           333444455789999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ||||++.+|++|||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            99999999999999999999999999999999998753  7899999999999865 89999999999999999887754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=5.1e-42  Score=375.41  Aligned_cols=204  Identities=35%  Similarity=0.499  Sum_probs=172.1

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH----H
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS----L 1080 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~----l 1080 (1253)
                      |+++||+++|+... ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...    .
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            47899999997321 146999999999999999999999999999999999999999999999999998776432    4


Q ss_pred             hcceEEEccCCCcccc-cHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1081 RRKIGLVQQEPALFST-TIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1081 R~~i~~V~Qdp~Lf~g-TIreNl~~g~~~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      |++++|+||++.+|.+ |++||+.++...  ..    ++++.++++..++           +........+||||||||+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv  149 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL-----------GDRLNHYPSELSGGQQQRV  149 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhcChhhcCHHHHHHH
Confidence            6789999999999986 999999875321  11    1233444444444           3333444568999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhccCEEEEEeCCEE
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKV 1220 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~i 1220 (1253)
                      +|||||+++|++|||||||++||+.+.+.+.+.|++..+  ++|+|+|||+++.+..||++++|++|++
T Consensus       150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            999999999999999999999999999999999998754  7899999999999888999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-41  Score=386.32  Aligned_cols=216  Identities=25%  Similarity=0.449  Sum_probs=181.0

Q ss_pred             EEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCC---------
Q 000851          377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS---------  444 (1253)
Q Consensus       377 i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~---------  444 (1253)
                      |+++||+|+|++..   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..         
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK   82 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence            78999999997532   249999999999999999999999999999999999999999999999987632         


Q ss_pred             ---------------CCHHHHhcccEEEeccC--ccCcccHHHHHhcCCCC--CCHHH----HHHHHHHhCcHHHHhcCC
Q 000851          445 ---------------LQLKWLREQMGLVSQEP--ALFATSIANNILLGKED--ASMDR----VIEAAKAANAHSFVEGLP  501 (1253)
Q Consensus       445 ---------------~~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~g~~~--~~~~~----~~~~~~~~~~~~~i~~l~  501 (1253)
                                     .+...+|+.||||+|+|  .+|..|++|||.|+...  .+.++    +.++++..++.       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~-------  155 (305)
T PRK13651         83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD-------  155 (305)
T ss_pred             cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC-------
Confidence                           13456788999999986  67888999999987432  22222    33344433332       


Q ss_pred             CCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-hc
Q 000851          502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVR-DV  579 (1253)
Q Consensus       502 ~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~  579 (1253)
                         .........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .|
T Consensus       156 ---~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a  232 (305)
T PRK13651        156 ---ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT  232 (305)
T ss_pred             ---hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence               023445667999999999999999999999999999999999999999999999875 4899999999999875 59


Q ss_pred             CEEEEEeCCEEEEeeCcchhhhc
Q 000851          580 DTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       580 d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |+|++|++|++++.|+.+++.+.
T Consensus       233 drv~vl~~G~i~~~g~~~~~~~~  255 (305)
T PRK13651        233 KRTIFFKDGKIIKDGDTYDILSD  255 (305)
T ss_pred             CEEEEEECCEEEEECCHHHHhcC
Confidence            99999999999999999888654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-41  Score=379.82  Aligned_cols=220  Identities=32%  Similarity=0.530  Sum_probs=187.8

Q ss_pred             CCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCC--CC
Q 000851          374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQ  446 (1253)
Q Consensus       374 ~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~  446 (1253)
                      .+.|+++|++++|++.  ++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+
T Consensus        11 ~~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~   88 (260)
T PRK10744         11 PSKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD   88 (260)
T ss_pred             CceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence            3569999999999743  49999999999999999999999999999999999986     589999999999853  45


Q ss_pred             HHHHhcccEEEeccCccCcccHHHHHhcCCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHH
Q 000851          447 LKWLREQMGLVSQEPALFATSIANNILLGKED---ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ  519 (1253)
Q Consensus       447 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq  519 (1253)
                      ...+|++|+|++|++.+|+.|++||+.++...   .+.    +++.++++..++.+.       +....++...+|||||
T Consensus        89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq  161 (260)
T PRK10744         89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-------VKDKLHQSGYSLSGGQ  161 (260)
T ss_pred             hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-------hHHHHhcCCCCCCHHH
Confidence            56788899999999999999999999876321   122    334455555544322       2234556778999999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcch
Q 000851          520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD  598 (1253)
Q Consensus       520 ~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~  598 (1253)
                      |||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus       162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  241 (260)
T PRK10744        162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT  241 (260)
T ss_pred             HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999998778899999999999865 89999999999999999988


Q ss_pred             hhhc
Q 000851          599 LISK  602 (1253)
Q Consensus       599 l~~~  602 (1253)
                      +...
T Consensus       242 ~~~~  245 (260)
T PRK10744        242 IFTK  245 (260)
T ss_pred             HHhC
Confidence            8654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-41  Score=379.95  Aligned_cols=227  Identities=31%  Similarity=0.516  Sum_probs=190.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCCC--CH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTL--NL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~i--~~ 1077 (1253)
                      .|+++||+++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.+||.++...  +.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~   79 (250)
T PRK14262          3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV   79 (250)
T ss_pred             eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence            3899999999963   4699999999999999999999999999999999999984     899999999998753  34


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC---CC----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE---DA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~---~~----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++|+||+|.+|+.|++||+.++..   ..    .++++.++++..++.+.+.       ...+....+||||||
T Consensus        80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~  152 (250)
T PRK14262         80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ  152 (250)
T ss_pred             HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence            567889999999999999999999986421   11    1233555666666543332       223455678999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14262        153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI  232 (250)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999999999999999999999998778999999999998755 999999999999999999999


Q ss_pred             hhcccchHHHHH
Q 000851         1230 LRKENGIYKQLI 1241 (1253)
Q Consensus      1230 l~~~~g~y~~L~ 1241 (1253)
                      .+.....|...+
T Consensus       233 ~~~~~~~~~~~~  244 (250)
T PRK14262        233 VERPKNKLTEEY  244 (250)
T ss_pred             HhCCCChHHHHH
Confidence            864433354443

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=1.3e-41  Score=388.54  Aligned_cols=213  Identities=27%  Similarity=0.502  Sum_probs=182.7

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+   +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus         7 ~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i   82 (306)
T PRK13537          7 PIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV   82 (306)
T ss_pred             eEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence            599999999996   346999999999999999999999999999999999999999999999999997654 4578999


Q ss_pred             EEEccCCCccc-ccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFS-TTIYENIKYGNE--DASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~-gTIreNl~~g~~--~~~d~e----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      |||||++.+|. .|++||+.+...  ..+..+    +.++++..+       +++..++++    .+||||||||++|||
T Consensus        83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~----~~LS~G~~qrl~la~  151 (306)
T PRK13537         83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-------LENKADAKV----GELSGGMKRRLTLAR  151 (306)
T ss_pred             EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchHhcCch----hhCCHHHHHHHHHHH
Confidence            99999999886 699999985321  122222    223333333       333445555    469999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ||+.+|++|||||||++||+.+.+.+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            9999999999999999999999999999999975 47899999999999966 999999999999999999999763

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.8e-41  Score=379.16  Aligned_cols=218  Identities=34%  Similarity=0.550  Sum_probs=182.2

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC--------H
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--------L 1077 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~--------~ 1077 (1253)
                      ++++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+        .
T Consensus         4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (250)
T PRK11264          4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI   80 (250)
T ss_pred             EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence            899999999973   46999999999999999999999999999999999999999999999999987542        3


Q ss_pred             HHHhcceEEEccCCCccc-ccHHHHhccCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1078 RSLRRKIGLVQQEPALFS-TTIYENIKYGN---EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~---~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      ..+|++++||||++.+|+ .|++||+.++.   .....++..+.     +.+.++.+  |++........+||||||||+
T Consensus        81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv  153 (250)
T PRK11264         81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV  153 (250)
T ss_pred             HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence            567889999999999886 69999997641   11122221111     12233332  343334456678999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      +|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  233 (250)
T PRK11264        154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA  233 (250)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999999875 48899999999999966 99999999999999999999876


Q ss_pred             cc
Q 000851         1232 KE 1233 (1253)
Q Consensus      1232 ~~ 1233 (1253)
                      ..
T Consensus       234 ~~  235 (250)
T PRK11264        234 DP  235 (250)
T ss_pred             CC
Confidence            43

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-41  Score=382.38  Aligned_cols=213  Identities=33%  Similarity=0.563  Sum_probs=184.3

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC-HHHHhcce
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-LRSLRRKI 1084 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~-~~~lR~~i 1084 (1253)
                      ++++||+++|+.  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+++++
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (274)
T PRK13644          2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV   79 (274)
T ss_pred             EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence            789999999963  345999999999999999999999999999999999999999999999999998765 46788899


Q ss_pred             EEEccCCC--cccccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1085 GLVQQEPA--LFSTTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1085 ~~V~Qdp~--Lf~gTIreNl~~g~~~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      +|+||+|.  +++.|++|||.++...  .+    ++++.++++..++.++..           .....||||||||++||
T Consensus        80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la  148 (274)
T PRK13644         80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA  148 (274)
T ss_pred             EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence            99999985  6778999999875321  22    233445555555544433           33467999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhh
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||+.+|+||||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus       149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  224 (274)
T PRK13644        149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS  224 (274)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence            99999999999999999999999999999999865 4899999999999998899999999999999999999875

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=2.1e-41  Score=379.60  Aligned_cols=218  Identities=32%  Similarity=0.512  Sum_probs=184.3

Q ss_pred             cCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCC-------
Q 000851         1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL------- 1075 (1253)
Q Consensus      1003 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i------- 1075 (1253)
                      .+.|+++||+++|+   +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...       
T Consensus         3 ~~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (257)
T PRK10619          3 ENKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL   79 (257)
T ss_pred             CccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence            35699999999997   34699999999999999999999999999999999999999999999999988642       


Q ss_pred             ------CHHHHhcceEEEccCCCccc-ccHHHHhccCC---CCCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCC
Q 000851         1076 ------NLRSLRRKIGLVQQEPALFS-TTIYENIKYGN---EDAS----EIELMKATKAANAHGFISRMPEGYQSHVGDR 1141 (1253)
Q Consensus      1076 ------~~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~---~~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~ 1141 (1253)
                            ....+|++++||||++.+|+ .|++||+.++.   ....    ++++.++++..++.++.          ....
T Consensus        80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~  149 (257)
T PRK10619         80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKY  149 (257)
T ss_pred             ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCC
Confidence                  13467889999999999997 49999997632   1112    22344445544443322          1344


Q ss_pred             CCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCE
Q 000851         1142 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219 (1253)
Q Consensus      1142 G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ 1219 (1253)
                      ...||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus       150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~  229 (257)
T PRK10619        150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK  229 (257)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence            57899999999999999999999999999999999999999999999875 48999999999999986 99999999999


Q ss_pred             EEEecChhHHhhcc
Q 000851         1220 VAEIGSHEQLLRKE 1233 (1253)
Q Consensus      1220 ive~Gt~~eLl~~~ 1233 (1253)
                      +++.|+++++.+..
T Consensus       230 i~~~~~~~~~~~~~  243 (257)
T PRK10619        230 IEEEGAPEQLFGNP  243 (257)
T ss_pred             EEEeCCHHHhhhCc
Confidence            99999999997643

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-41  Score=379.90  Aligned_cols=221  Identities=28%  Similarity=0.480  Sum_probs=190.5

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      ++++|++++|+   +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++...+++.++
T Consensus         3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (255)
T PRK11231          3 LRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA   79 (255)
T ss_pred             EEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence            78999999996   346999999999999999999999999999999999999999999999999998888888889999


Q ss_pred             EEccCCCcccc-cHHHHhccCCCC----------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGNED----------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~~~----------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      |+||++.+|.+ |++||+.++...          ..++++.++++..++.++..           .....||||||||++
T Consensus        80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~  148 (255)
T PRK11231         80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF  148 (255)
T ss_pred             EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence            99999998876 999999875211          11234555666666554433           334679999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.. 
T Consensus       149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~-  227 (255)
T PRK11231        149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT-  227 (255)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence            9999999999999999999999999999999999865 47899999999999865 99999999999999999999875 


Q ss_pred             ccchHHHHHH
Q 000851         1233 ENGIYKQLIR 1242 (1253)
Q Consensus      1233 ~~g~y~~L~~ 1242 (1253)
                       ...+.+.+.
T Consensus       228 -~~~~~~~~~  236 (255)
T PRK11231        228 -PGLLRTVFD  236 (255)
T ss_pred             -HHHHHHHhC
Confidence             244555553

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1.1e-41  Score=373.95  Aligned_cols=216  Identities=26%  Similarity=0.441  Sum_probs=179.4

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHH-hcccE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQMG  455 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~  455 (1253)
                      |+++||+++|++.  ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +++++
T Consensus         1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (222)
T cd03224           1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG   78 (222)
T ss_pred             CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence            5789999999743  49999999999999999999999999999999999999999999999999987776544 66799


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000851          456 LVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK  534 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~  534 (1253)
                      |++|++.+|.. |++||+.++.......+..+.  ...+.+.+..    ++......+.+||||||||++||||++.+|+
T Consensus        79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~----l~~~~~~~~~~LS~G~~qrv~laral~~~p~  152 (222)
T cd03224          79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKAR--LERVYELFPR----LKERRKQLAGTLSGGEQQMLAIARALMSRPK  152 (222)
T ss_pred             EeccccccCCCCcHHHHHHHHhhhcCchhHHHH--HHHHHHHHHh----hhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            99999999986 999999886533211111111  1111122212    2333445667899999999999999999999


Q ss_pred             EEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          535 ILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       535 ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      +|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus       153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            999999999999999999999999875 57899999999998765 8999999999999999887764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-41  Score=377.96  Aligned_cols=224  Identities=29%  Similarity=0.498  Sum_probs=188.1

Q ss_pred             cCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CccEEEECCccCCCC--
Q 000851         1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD--P---ISGTVLIDGYDIRTL-- 1075 (1253)
Q Consensus      1003 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~--p---~~G~I~idG~di~~i-- 1075 (1253)
                      ++.|+++|++++|+.   .++|+|+||+|++||.+||+|+||||||||+++|.|+++  |   ++|+|.+||.++...  
T Consensus         2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   78 (252)
T PRK14256          2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV   78 (252)
T ss_pred             CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence            356999999999963   469999999999999999999999999999999999986  4   689999999998653  


Q ss_pred             CHHHHhcceEEEccCCCccc-ccHHHHhccCCC--C-CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 000851         1076 NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNE--D-AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSG 1147 (1253)
Q Consensus      1076 ~~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~-~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSg 1147 (1253)
                      +...+|++++|+||++.+|. .|++||+.++..  . .+    ++++.++++..++.+++..       ..+..+.+|||
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~  151 (252)
T PRK14256         79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSG  151 (252)
T ss_pred             ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCH
Confidence            34577899999999999998 599999986421  1 11    2334555556655443321       23345678999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecCh
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1226 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~ 1226 (1253)
                      |||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus       152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~  231 (252)
T PRK14256        152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET  231 (252)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999998778899999999999855 999999999999999999


Q ss_pred             hHHhhcccch
Q 000851         1227 EQLLRKENGI 1236 (1253)
Q Consensus      1227 ~eLl~~~~g~ 1236 (1253)
                      +++...+...
T Consensus       232 ~~~~~~~~~~  241 (252)
T PRK14256        232 KKIFTTPEKK  241 (252)
T ss_pred             HHHHhCCCcH
Confidence            9998654433

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-41  Score=396.09  Aligned_cols=212  Identities=31%  Similarity=0.513  Sum_probs=182.6

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..  +++|+
T Consensus         3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~   78 (369)
T PRK11000          3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG   78 (369)
T ss_pred             EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence            4899999999974  3499999999999999999999999999999999999999999999999999876543  46799


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          456 LVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      ||+|++.+|.. |++||+.|+...  .+.    +++.++++..++.++.           .....+||||||||++||||
T Consensus        79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAra  147 (369)
T PRK11000         79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRT  147 (369)
T ss_pred             EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHH
Confidence            99999999965 999999987431  121    2344555555544433           34456899999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |+.+|++||||||||+||+.+.+.+.+.|+++.+  ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~  224 (369)
T PRK11000        148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (369)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999998753  7899999999998865 899999999999999999988754

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=1.1e-41  Score=371.31  Aligned_cols=203  Identities=34%  Similarity=0.616  Sum_probs=174.1

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+.   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+..  +++++
T Consensus         1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~   75 (213)
T cd03301           1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA   75 (213)
T ss_pred             CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence            478999999973   4699999999999999999999999999999999999999999999999998766543  57899


Q ss_pred             EEccCCCccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |+||++.+|. .|++||+.++..  ..+    ++++.++++..++.++...           ...+||||||||++||||
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~lara  144 (213)
T cd03301          76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRA  144 (213)
T ss_pred             EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHH
Confidence            9999999885 699999987521  112    2234455566655544433           346799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      |+++|++|||||||++||+.+.+.+.+.|++..  .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus       145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            999999999999999999999999999999875  37899999999999876 9999999999999876

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-41  Score=382.71  Aligned_cols=215  Identities=31%  Similarity=0.524  Sum_probs=188.6

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCc---cEEEECCccCCCCCHHHHh
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS---GTVLIDGYDIRTLNLRSLR 1081 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~---G~I~idG~di~~i~~~~lR 1081 (1253)
                      .|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++   |+|.+||.++...+...+|
T Consensus         5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~   83 (282)
T PRK13640          5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR   83 (282)
T ss_pred             eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence            58999999999732 2469999999999999999999999999999999999999987   8999999999887777889


Q ss_pred             cceEEEccCC--CcccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1082 RKIGLVQQEP--ALFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1082 ~~i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      ++++||||+|  .+++.|++|||.++..  ..+.    +++.++++..++.++..+.|           .+||||||||+
T Consensus        84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv  152 (282)
T PRK13640         84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV  152 (282)
T ss_pred             hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence            9999999998  4678899999987532  2233    33556677777665554433           68999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhh
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      +|||||+.+|++|||||||++||+.+.+.+.+.|++..+  ++|||++||+++.+..||+|++|++|++++.|++++++.
T Consensus       153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (282)
T PRK13640        153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS  232 (282)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999999999999999999998753  789999999999998899999999999999999998875

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-41  Score=388.20  Aligned_cols=227  Identities=29%  Similarity=0.477  Sum_probs=188.5

Q ss_pred             cEEEEeEEEECCCCC-------CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCH
Q 000851         1005 NIELRNVSFKYPVRP-------DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~-------~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~ 1077 (1253)
                      -|+++|++++|+.+.       ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+..++.
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~   84 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP   84 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence            489999999997421       2468999999999999999999999999999999999999999999999999988875


Q ss_pred             H---HHhcceEEEccCCC--ccc-ccHHHHhccC---CCCCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 000851         1078 R---SLRRKIGLVQQEPA--LFS-TTIYENIKYG---NEDAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ 1144 (1253)
Q Consensus      1078 ~---~lR~~i~~V~Qdp~--Lf~-gTIreNl~~g---~~~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1144 (1253)
                      .   .+|++|+||+|+|.  |++ -|+.+|+...   .....    .+.+.++++.+++.+      ..++.    ...+
T Consensus        85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~  154 (327)
T PRK11308         85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHM  154 (327)
T ss_pred             HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCcc
Confidence            3   56889999999994  555 4898888532   11112    234555666665532      12233    3467


Q ss_pred             CChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEE
Q 000851         1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1221 (1253)
Q Consensus      1145 LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~iv 1221 (1253)
                      ||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+  +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus       155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv  234 (327)
T PRK11308        155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV  234 (327)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999998753  8899999999999975 9999999999999


Q ss_pred             EecChhHHhhcccchHHHHH
Q 000851         1222 EIGSHEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1222 e~Gt~~eLl~~~~g~y~~L~ 1241 (1253)
                      |.|+++++++++...|.+.+
T Consensus       235 e~g~~~~~~~~p~hpyt~~l  254 (327)
T PRK11308        235 EKGTKEQIFNNPRHPYTQAL  254 (327)
T ss_pred             EECCHHHHhcCCCCHHHHHH
Confidence            99999999986555566543

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=2.1e-41  Score=376.04  Aligned_cols=213  Identities=32%  Similarity=0.545  Sum_probs=181.9

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC--HHHHhcc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN--LRSLRRK 1083 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~--~~~lR~~ 1083 (1253)
                      ++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+  ...+|++
T Consensus         2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (240)
T PRK09493          2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE   78 (240)
T ss_pred             EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence            789999999963   46999999999999999999999999999999999999999999999999987643  4567889


Q ss_pred             eEEEccCCCccc-ccHHHHhccCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1084 IGLVQQEPALFS-TTIYENIKYGNE---DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~-gTIreNl~~g~~---~~~d~----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      ++|+||++.+|. .|+++|+.++..   ..+.+    ++.++++..           |++.........||||||||++|
T Consensus        79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~l  147 (240)
T PRK09493         79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKV-----------GLAERAHHYPSELSGGQQQRVAI  147 (240)
T ss_pred             eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHc-----------CChHHHhcChhhcCHHHHHHHHH
Confidence            999999999886 599999987421   11222    233333333           34433444557899999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus       148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (240)
T PRK09493        148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN  226 (240)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence            999999999999999999999999999999999875 47999999999999965 999999999999999999998763

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.3e-41  Score=368.26  Aligned_cols=199  Identities=31%  Similarity=0.531  Sum_probs=171.5

Q ss_pred             EEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEE
Q 000851          378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV  457 (1253)
Q Consensus       378 ~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v  457 (1253)
                      +++|++++|++. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..   ...+++|+|+
T Consensus         1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~   76 (205)
T cd03226           1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV   76 (205)
T ss_pred             CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence            368999999752 349999999999999999999999999999999999999999999999998753   4567789999


Q ss_pred             eccC--ccCcccHHHHHhcCCCCC--CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          458 SQEP--ALFATSIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       458 ~Q~~--~lf~~ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      +|++  .++..|++||+.++.+..  ..+++.++++..++.++..+.           ..+||||||||++||||++.+|
T Consensus        77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p  145 (205)
T cd03226          77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH-----------PLSLSGGQKQRLAIAAALLSGK  145 (205)
T ss_pred             ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC-----------chhCCHHHHHHHHHHHHHHhCC
Confidence            9998  467789999999864332  234566667766665554443           3589999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 000851          534 KILLLDEATSALDAESELIVQRALEKI-MSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVV  591 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~  591 (1253)
                      ++|||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+.. ||++++|++|+++
T Consensus       146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            999999999999999999999999987 457899999999999875 8999999999975

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-41  Score=376.25  Aligned_cols=212  Identities=30%  Similarity=0.474  Sum_probs=179.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCC------CCCHHH
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR------TLNLRS 1079 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~------~i~~~~ 1079 (1253)
                      ++++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.      ..+...
T Consensus         3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (242)
T PRK11124          3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE   79 (242)
T ss_pred             EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence            789999999963   46999999999999999999999999999999999999999999999999873      123456


Q ss_pred             HhcceEEEccCCCcccc-cHHHHhccCC---CCCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1080 LRRKIGLVQQEPALFST-TIYENIKYGN---EDASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1080 lR~~i~~V~Qdp~Lf~g-TIreNl~~g~---~~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      +|++++|+||++.+|++ |++||+.++.   .....    +++.+.++..+           ++..+.....+|||||||
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~q  148 (242)
T PRK11124         80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLR-----------LKPYADRFPLHLSGGQQQ  148 (242)
T ss_pred             HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHH
Confidence            78899999999999975 9999997421   11122    22333344443           333344445689999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      |++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            9999999999999999999999999999999999999875 48999999999999865 999999999999999999987


Q ss_pred             hh
Q 000851         1230 LR 1231 (1253)
Q Consensus      1230 l~ 1231 (1253)
                      .+
T Consensus       229 ~~  230 (242)
T PRK11124        229 TQ  230 (242)
T ss_pred             cC
Confidence            65

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-41  Score=376.65  Aligned_cols=218  Identities=30%  Similarity=0.549  Sum_probs=186.7

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----ccEEEECCccCCCC--CH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDIRTL--NL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~-----~G~I~idG~di~~i--~~ 1077 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++|+     +|+|.+||.++...  +.
T Consensus         4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   80 (251)
T PRK14249          4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV   80 (251)
T ss_pred             eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence            5899999999963   46999999999999999999999999999999999999997     69999999998643  45


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~-~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|+.++||||+|.+|+.|++||+.++..  .. .    ++.+.++++..++.+.+.       ......+.+||||||
T Consensus        81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~  153 (251)
T PRK14249         81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ  153 (251)
T ss_pred             HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence            678999999999999999999999987531  11 1    123444455555543332       234556778999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14249        154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI  233 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence            9999999999999999999999999999999999999988668999999999999876 899999999999999999998


Q ss_pred             hhc
Q 000851         1230 LRK 1232 (1253)
Q Consensus      1230 l~~ 1232 (1253)
                      ...
T Consensus       234 ~~~  236 (251)
T PRK14249        234 FSR  236 (251)
T ss_pred             HhC
Confidence            764

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-41  Score=374.06  Aligned_cols=218  Identities=26%  Similarity=0.412  Sum_probs=181.2

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-Hhcc
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRK 1083 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~-lR~~ 1083 (1253)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +|++
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   81 (237)
T PRK11614          5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA   81 (237)
T ss_pred             EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence            4899999999963   46999999999999999999999999999999999999999999999999998887654 6788


Q ss_pred             eEEEccCCCcccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000851         1084 IGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~g-TIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~ 1162 (1253)
                      ++|+||++.+|++ |+++|+.++....+.++..+.+     .+.++.++. ++.........||||||||++|||||+++
T Consensus        82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~  155 (237)
T PRK11614         82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMSQ  155 (237)
T ss_pred             EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence            9999999999985 9999998753222222222211     111222111 11112234567999999999999999999


Q ss_pred             CCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1163 PSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1163 p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence            99999999999999999999999999875 48999999999998755 99999999999999999999975

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-41  Score=378.49  Aligned_cols=220  Identities=30%  Similarity=0.493  Sum_probs=188.5

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~--i~~ 1077 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|++.     |++|+|.+||.++..  .+.
T Consensus        10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   86 (264)
T PRK14243         10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP   86 (264)
T ss_pred             EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence            4899999999963   469999999999999999999999999999999999986     479999999998853  455


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCCC--C---CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNED--A---SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~--~---~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQr 1152 (1253)
                      ..+|++++|++|++.+|+.|++||+.++...  .   .++++.++++.+++.+++..       .....+.+||||||||
T Consensus        87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr  159 (264)
T PRK14243         87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR  159 (264)
T ss_pred             HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence            6788999999999999989999999875321  1   12345556677776554432       2344567899999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEe---------CCEEEE
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ---------QGKVAE 1222 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~---------~G~ive 1222 (1253)
                      ++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|+         +|++++
T Consensus       160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~  239 (264)
T PRK14243        160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE  239 (264)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence            99999999999999999999999999999999999998777899999999999865 99999998         899999


Q ss_pred             ecChhHHhhccc
Q 000851         1223 IGSHEQLLRKEN 1234 (1253)
Q Consensus      1223 ~Gt~~eLl~~~~ 1234 (1253)
                      .|+++|+.+.+.
T Consensus       240 ~~~~~~~~~~~~  251 (264)
T PRK14243        240 FDRTEKIFNSPQ  251 (264)
T ss_pred             eCCHHHHHhCCC
Confidence            999999986443

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=1.2e-41  Score=375.65  Aligned_cols=212  Identities=30%  Similarity=0.467  Sum_probs=180.0

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-Hhcce
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRKI 1084 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~-lR~~i 1084 (1253)
                      |+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (230)
T TIGR03410         1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI   77 (230)
T ss_pred             CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence            478999999973   46999999999999999999999999999999999999999999999999998877654 46789


Q ss_pred             EEEccCCCcccc-cHHHHhccCCCCC--CHHH-HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNEDA--SEIE-LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~~~~--~d~e-i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALl 1160 (1253)
                      +|+||++.+|+. |+++|+.++....  ..++ ..++++..+          +++........+||||||||++|||||+
T Consensus        78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~  147 (230)
T TIGR03410        78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV  147 (230)
T ss_pred             EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence            999999999986 9999998753221  1111 122222222          1223334455679999999999999999


Q ss_pred             cCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1161 KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1161 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      ++|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~  220 (230)
T TIGR03410       148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD  220 (230)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence            99999999999999999999999999998753  7899999999999986 9999999999999999999974

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-41  Score=377.70  Aligned_cols=227  Identities=30%  Similarity=0.500  Sum_probs=190.7

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCCC--CH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTL--NL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~i--~~ 1077 (1253)
                      .|+++||+++|+   +.++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++...  +.
T Consensus         6 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   82 (253)
T PRK14261          6 ILSTKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV   82 (253)
T ss_pred             eEEEeeeEEEEC---CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence            489999999996   34699999999999999999999999999999999999763     489999999999876  45


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCCC--C-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNED--A-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~--~-~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ...|+.++|++|++.+|+.|++||+.++...  . .    ++.+.++++.+++.+.       +.+..+..+.+||||||
T Consensus        83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~  155 (253)
T PRK14261         83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQ  155 (253)
T ss_pred             hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHH
Confidence            6778899999999999999999999875321  1 1    2234445555544322       22335566778999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14261        156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI  235 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence            9999999999999999999999999999999999999998777999999999999965 999999999999999999999


Q ss_pred             hhcccchHHHHH
Q 000851         1230 LRKENGIYKQLI 1241 (1253)
Q Consensus      1230 l~~~~g~y~~L~ 1241 (1253)
                      .+++...+.+.+
T Consensus       236 ~~~~~~~~~~~~  247 (253)
T PRK14261        236 FENPHEELTENY  247 (253)
T ss_pred             HhCCCcHHHHHH
Confidence            864444455544

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-41  Score=380.49  Aligned_cols=218  Identities=30%  Similarity=0.520  Sum_probs=187.9

Q ss_pred             cEEEEEEEEECCCCC-CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          376 QIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      -|+++||+++|++.. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.|
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i   83 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI   83 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence            489999999997432 3499999999999999999999999999999999999999999999999999877777788899


Q ss_pred             EEEeccCc--cCcccHHHHHhcCCC--CCCHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          455 GLVSQEPA--LFATSIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       455 ~~v~Q~~~--lf~~ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      +||+|+|.  ++..|+.|||.++..  ..+.+    ++.++++..++.++...           ...+||||||||++||
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA  152 (277)
T PRK13642         84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA  152 (277)
T ss_pred             EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence            99999983  667899999987632  12222    34455566555554433           3468999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhcCc
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGG  604 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~  604 (1253)
                      |||+++|++|||||||++||+.+.+.+.+.|.++.+  |+|+|++||+++.+..||+|++|++|++++.|++++++...+
T Consensus       153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~  232 (277)
T PRK13642        153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE  232 (277)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence            999999999999999999999999999999998854  799999999999998899999999999999999999876533

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=1.1e-41  Score=373.22  Aligned_cols=205  Identities=35%  Similarity=0.521  Sum_probs=174.4

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      |+++|++++|+... ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..     +++++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i   75 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR   75 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence            47899999997311 1469999999999999999999999999999999999999999999999998863     46789


Q ss_pred             EEEccCCCccc-ccHHHHhccCCC--CC----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFS-TTIYENIKYGNE--DA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~-gTIreNl~~g~~--~~----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      +||||+|.+|+ .|++||+.++..  ..    .++++.++++..++.++..+           ...+||||||||++|||
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~  144 (220)
T cd03293          76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR  144 (220)
T ss_pred             EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHH
Confidence            99999999987 699999986421  11    12345556666666544433           33579999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEe--CCEEEEecCh
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQ--QGKVAEIGSH 1226 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~--~G~ive~Gt~ 1226 (1253)
                      ||+++|++|||||||++||+.+.+.+.+.|++..  .++|+|+|||+++.+.. ||+|++|+  +|++++.++.
T Consensus       145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            9999999999999999999999999999999874  37899999999998865 99999999  7999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-41  Score=380.13  Aligned_cols=220  Identities=29%  Similarity=0.503  Sum_probs=185.7

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~--i~~ 1077 (1253)
                      .++++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++     |++|+|.+||.++..  .+.
T Consensus        24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~  100 (271)
T PRK14238         24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV  100 (271)
T ss_pred             EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence            5999999999973   469999999999999999999999999999999999997     699999999999853  345


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC--CCCH-----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DASE-----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~~d-----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++|+||+|.+|..|++||+.++..  ..++     +.+.++++..++.       +++.......+.+||||||
T Consensus       101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~  173 (271)
T PRK14238        101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ  173 (271)
T ss_pred             HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence            677899999999999999999999986421  1221     1223333333322       1233334556678999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  253 (271)
T PRK14238        174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI  253 (271)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999865 999999999999999999999


Q ss_pred             hhccc
Q 000851         1230 LRKEN 1234 (1253)
Q Consensus      1230 l~~~~ 1234 (1253)
                      .+.+.
T Consensus       254 ~~~~~  258 (271)
T PRK14238        254 FSNPS  258 (271)
T ss_pred             HcCCC
Confidence            86443

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=2.2e-41  Score=368.35  Aligned_cols=203  Identities=26%  Similarity=0.489  Sum_probs=175.5

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++||+|+|+++  ++|+|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+++.++|
T Consensus         1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~   76 (211)
T cd03264           1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY   76 (211)
T ss_pred             CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence            5789999999753  4999999999999 99999999999999999999999999999999999987766 667889999


Q ss_pred             EeccCccCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      ++|++.+|.. |++||+.+...  ...    .+++.++++..++.++.+           ....+||||||||++||||+
T Consensus        77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al  145 (211)
T cd03264          77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL  145 (211)
T ss_pred             ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence            9999999976 99999986421  111    234555566665544432           33458999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEee
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g  594 (1253)
                      +++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999999999999999999999998777999999999999865 8999999999998765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=1.9e-41  Score=371.67  Aligned_cols=205  Identities=30%  Similarity=0.498  Sum_probs=172.7

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---Hh
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LR 1081 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~---lR 1081 (1253)
                      |+++||+++|+... ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++...   +|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence            78999999997321 246999999999999999999999999999999999999999999999999998877644   34


Q ss_pred             -cceEEEccCCCccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1082 -RKIGLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1082 -~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                       ++++||||++.+|+ .|++||+.++..  ..+    .+++.++++..++           +.........||||||||+
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv  150 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL-----------EHRINHRPSELSGGERQRV  150 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHH
Confidence             68999999999986 599999986321  111    1233344444443           3333444568999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhccCEEEEEeCCEEE
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRNADKIAVLQQGKVA 1221 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~iv 1221 (1253)
                      +|||||+++|+||||||||++||+.+.+.+.+.|++..  .++|+|+|||+++.+..||+|++|++|+++
T Consensus       151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            99999999999999999999999999999999999875  378999999999999889999999999986

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-41  Score=372.83  Aligned_cols=209  Identities=29%  Similarity=0.515  Sum_probs=177.5

Q ss_pred             cEEEEEEEEECCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH---H
Q 000851          376 QIEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---L  450 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~  450 (1253)
                      -++++||+|+|+++.  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...   +
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   84 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL   84 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence            389999999997432  34999999999999999999999999999999999999999999999999998877543   3


Q ss_pred             h-cccEEEeccCccCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          451 R-EQMGLVSQEPALFAT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       451 r-~~i~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      | +.|+|++|++.+|+. |++||+.++..  ....    +++.++++..           |++........+||||||||
T Consensus        85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr  153 (233)
T PRK11629         85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR  153 (233)
T ss_pred             HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence            3 679999999998876 99999987421  1111    2233333333           44444555667899999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeC
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT  595 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~  595 (1253)
                      ++||||++.+|++|||||||++||+.+.+.+.+.|+++.  +|+|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus       154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence            999999999999999999999999999999999999874  4799999999999999899999999999998875

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=1.6e-41  Score=371.47  Aligned_cols=203  Identities=34%  Similarity=0.521  Sum_probs=171.8

Q ss_pred             EEEEEEEEECCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH----HH
Q 000851          377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK----WL  450 (1253)
Q Consensus       377 i~~~~v~f~y~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~----~~  450 (1253)
                      |+++||+++|++..  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..    ..
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            47899999997421  3499999999999999999999999999999999999999999999999998876532    24


Q ss_pred             hcccEEEeccCccCcc-cHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 000851          451 REQMGLVSQEPALFAT-SIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI  523 (1253)
Q Consensus       451 r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qri  523 (1253)
                      +++++|++|++.+|.. |++||+.++....  .    .+++.++++..           |++......+.+||||||||+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv  149 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERV-----------GLGDRLNHYPSELSGGQQQRV  149 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc-----------CCchhhhcChhhcCHHHHHHH
Confidence            5789999999999976 9999998864321  1    12233333333           444444556678999999999


Q ss_pred             HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000851          524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQV  590 (1253)
Q Consensus       524 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i  590 (1253)
                      +|||||+.+|++|||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+..||++++|++|++
T Consensus       150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            999999999999999999999999999999999999854  7899999999999888999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-41  Score=380.13  Aligned_cols=220  Identities=30%  Similarity=0.500  Sum_probs=187.1

Q ss_pred             CCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCC--CC
Q 000851          374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQ  446 (1253)
Q Consensus       374 ~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~  446 (1253)
                      .+.|+++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++..  .+
T Consensus        17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~   94 (267)
T PRK14235         17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD   94 (267)
T ss_pred             CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence            457999999999974  3499999999999999999999999999999999999975     89999999999864  34


Q ss_pred             HHHHhcccEEEeccCccCcccHHHHHhcCCC--CC--C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChH
Q 000851          447 LKWLREQMGLVSQEPALFATSIANNILLGKE--DA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGG  518 (1253)
Q Consensus       447 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG  518 (1253)
                      ...+|+.|+||+|++.+|+.|+.||+.++..  ..  +    .+++.++++..++.+++       ....+..+.+||||
T Consensus        95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG  167 (267)
T PRK14235         95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSGG  167 (267)
T ss_pred             hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHH
Confidence            5667889999999999998899999987531  10  1    23344555555543322       12345567789999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcc
Q 000851          519 QKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHV  597 (1253)
Q Consensus       519 q~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~  597 (1253)
                      ||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus       168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~  247 (267)
T PRK14235        168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE  247 (267)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999998778899999999999865 8999999999999999998


Q ss_pred             hhhhc
Q 000851          598 DLISK  602 (1253)
Q Consensus       598 ~l~~~  602 (1253)
                      ++...
T Consensus       248 ~~~~~  252 (267)
T PRK14235        248 KMFTN  252 (267)
T ss_pred             HHHhC
Confidence            88643

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-41  Score=381.15  Aligned_cols=220  Identities=29%  Similarity=0.545  Sum_probs=186.9

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCC--CC
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRT--LN 1076 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~--i~ 1076 (1253)
                      ..|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.++|.++..  .+
T Consensus        38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~  114 (285)
T PRK14254         38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD  114 (285)
T ss_pred             ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence            35999999999963   469999999999999999999999999999999999997     689999999999864  34


Q ss_pred             HHHHhcceEEEccCCCcccccHHHHhccCCC-----CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNE-----DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1077 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-----~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      ...+|++++||||++.+|+.|++||+.++..     ...++++.++++..++...+.       ........+|||||||
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q  187 (285)
T PRK14254        115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ  187 (285)
T ss_pred             hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence            5678899999999999999999999986421     112345666666666543322       1234455789999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEE-EEeCCEEEEecChhHH
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIA-VLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~-Vl~~G~ive~Gt~~eL 1229 (1253)
                      |++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus       188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~  267 (285)
T PRK14254        188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI  267 (285)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999998777899999999999876 99975 5799999999999998


Q ss_pred             hhcc
Q 000851         1230 LRKE 1233 (1253)
Q Consensus      1230 l~~~ 1233 (1253)
                      .++.
T Consensus       268 ~~~~  271 (285)
T PRK14254        268 FENP  271 (285)
T ss_pred             HhCc
Confidence            7643

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-41  Score=381.98  Aligned_cols=215  Identities=29%  Similarity=0.502  Sum_probs=184.2

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCC--CCCHHHHhcc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK--SLQLKWLREQ  453 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~  453 (1253)
                      -|+++||+|+|++ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.  ..+...+|+.
T Consensus         5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~   83 (283)
T PRK13636          5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES   83 (283)
T ss_pred             eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence            4899999999963 234999999999999999999999999999999999999999999999999984  3445678889


Q ss_pred             cEEEeccC--ccCcccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 000851          454 MGLVSQEP--ALFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       454 i~~v~Q~~--~lf~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriai  525 (1253)
                      |||++|++  .+|+.|++||+.++...  .+.    +++.++++..++.+           .....+.+||||||||++|
T Consensus        84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~l  152 (283)
T PRK13636         84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVAI  152 (283)
T ss_pred             EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHHH
Confidence            99999998  57888999999875321  122    23444445554433           3345567999999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||||+.+|++|||||||++||+.+...+.+.|+++.+  |+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus       153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  232 (283)
T PRK13636        153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  232 (283)
T ss_pred             HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999998854  799999999999987 5999999999999999999988764

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=4.8e-41  Score=363.56  Aligned_cols=199  Identities=38%  Similarity=0.585  Sum_probs=181.0

Q ss_pred             EEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000851          377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~  453 (1253)
                      |+++||+++|++..   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             +
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~   67 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S   67 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence            57899999997542   2599999999999999999999999999999999999999999999998             5


Q ss_pred             cEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          454 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       454 i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      |+|++|+|.+|+.|++||+.++.. ...++..++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus        68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p  146 (204)
T cd03250          68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA  146 (204)
T ss_pred             EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999998743 3455677788888999999999999999999999999999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHH-HHHHH-cCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000851          534 KILLLDEATSALDAESELIVQR-ALEKI-MSNRTTIVVAHRLSTVRDVDTIMVLKNGQ  589 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~-~l~~~-~~~~t~i~itH~l~~~~~~d~i~vl~~G~  589 (1253)
                      +++||||||++||+++.+.+.+ .+++. .+++|+|++||+++.+..||++++|++|+
T Consensus       147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            9999999999999999888877 45655 34789999999999998899999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=2e-41  Score=357.89  Aligned_cols=178  Identities=37%  Similarity=0.661  Sum_probs=166.1

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+.+ +.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus         1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~   78 (178)
T cd03247           1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS   78 (178)
T ss_pred             CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence            5789999999743 23699999999999999999999999999999999999999999999999988766 567889999


Q ss_pred             EEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000851         1086 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165 (1253)
Q Consensus      1086 ~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1165 (1253)
                      |+||+|.+|+.|++||+                                       ..+||||||||++||||++++|++
T Consensus        79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~  119 (178)
T cd03247          79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI  119 (178)
T ss_pred             EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999998                                       357999999999999999999999


Q ss_pred             EEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhccCEEEEEeCCEEEEec
Q 000851         1166 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1166 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~G 1224 (1253)
                      |||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus       120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG  178 (178)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999887789999999999999889999999999999865

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.5e-41  Score=370.61  Aligned_cols=201  Identities=37%  Similarity=0.569  Sum_probs=174.6

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH---HHhc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLRR 1082 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~---~lR~ 1082 (1253)
                      |+++|++++|+.  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++..   .+|+
T Consensus         2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (214)
T TIGR02673         2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR   79 (214)
T ss_pred             EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence            789999999952  34699999999999999999999999999999999999999999999999999887643   4688


Q ss_pred             ceEEEccCCCccc-ccHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1083 KIGLVQQEPALFS-TTIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf~-gTIreNl~~g~~------~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      +++|+||+|.+|. .|++||+.++..      ...++++.++++..++.++..+.|           .+||||||||++|
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l  148 (214)
T TIGR02673        80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI  148 (214)
T ss_pred             heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence            9999999999986 699999987421      112345667777777665544433           5799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCE
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ 1219 (1253)
                      ||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus       149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            999999999999999999999999999999999874 48999999999999976 99999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-41  Score=392.42  Aligned_cols=214  Identities=29%  Similarity=0.499  Sum_probs=183.7

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      ..|+++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++  .++.|
T Consensus        18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i   93 (377)
T PRK11607         18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI   93 (377)
T ss_pred             ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence            35999999999974  349999999999999999999999999999999999999999999999999987654  46789


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          455 GLVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      |||+|++.||+. |++|||.|+...  .+.    +++.+.++..++.++.           .....+||||||||++|||
T Consensus        94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVaLAR  162 (377)
T PRK11607         94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVALAR  162 (377)
T ss_pred             EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence            999999999976 999999987431  122    2344455555544443           3444689999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      ||+.+|++||||||||+||+.+...+.+.|+++.  .+.|+|+|||+++++.. ||+|++|++|++++.|+++|+..+.
T Consensus       163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p  241 (377)
T PRK11607        163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP  241 (377)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence            9999999999999999999999999999888764  37899999999998754 8999999999999999999987653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=4e-41  Score=378.69  Aligned_cols=226  Identities=29%  Similarity=0.471  Sum_probs=185.1

Q ss_pred             EEEEeEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH
Q 000851         1006 IELRNVSFKYPVR------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS 1079 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~ 1079 (1253)
                      |+++||+++|+..      .+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~   82 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ   82 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence            7899999999631      1356999999999999999999999999999999999999999999999999998876543


Q ss_pred             ---HhcceEEEccCCC--cc-cccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000851         1080 ---LRRKIGLVQQEPA--LF-STTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 1146 (1253)
Q Consensus      1080 ---lR~~i~~V~Qdp~--Lf-~gTIreNl~~g~~---~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1146 (1253)
                         +|++|+|+||+|.  ++ ..|++||+.++..   ...    ++++.++++..++.+          ......+.+||
T Consensus        83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS  152 (265)
T TIGR02769        83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS  152 (265)
T ss_pred             HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence               6788999999983  44 3799999964311   111    223334444443321          22344567899


Q ss_pred             hhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 000851         1147 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1223 (1253)
Q Consensus      1147 gGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~ 1223 (1253)
                      ||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+  ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus       153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  232 (265)
T TIGR02769       153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE  232 (265)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence            9999999999999999999999999999999999999999998753  7899999999999975 999999999999999


Q ss_pred             cChhHHhhcccchHHHHH
Q 000851         1224 GSHEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1224 Gt~~eLl~~~~g~y~~L~ 1241 (1253)
                      |++++++..++..++.+.
T Consensus       233 g~~~~~~~~~~~~~~~~~  250 (265)
T TIGR02769       233 CDVAQLLSFKHPAGRNLQ  250 (265)
T ss_pred             CCHHHHcCCCCHHHHHHH
Confidence            999999874333444443

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-41  Score=375.25  Aligned_cols=204  Identities=31%  Similarity=0.478  Sum_probs=178.1

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.     .+|+++
T Consensus        12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i   83 (257)
T PRK11247         12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT   83 (257)
T ss_pred             cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence            4999999999963   46999999999999999999999999999999999999999999999998753     567899


Q ss_pred             EEEccCCCccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000851         1085 GLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~-gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p 1163 (1253)
                      +|++|++.+|+ .|++||+.++.....++++.++++..++.++.           .....+||||||||++|||||+++|
T Consensus        84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p  152 (257)
T PRK11247         84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRP  152 (257)
T ss_pred             EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCC
Confidence            99999999987 69999998754322345566667776665443           3344689999999999999999999


Q ss_pred             CEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 000851         1164 SILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHE 1227 (1253)
Q Consensus      1164 ~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~ 1227 (1253)
                      ++|||||||++||+.+.+.+.+.|++..  .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus       153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            9999999999999999999999999864  37899999999999865 9999999999999988764

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=3.1e-41  Score=373.50  Aligned_cols=216  Identities=29%  Similarity=0.519  Sum_probs=183.5

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... ++.++|
T Consensus         2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~   78 (236)
T TIGR03864         2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV   78 (236)
T ss_pred             EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence            689999999974  34999999999999999999999999999999999999999999999999987766544 458999


Q ss_pred             EeccCccC-cccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          457 VSQEPALF-ATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       457 v~Q~~~lf-~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      ++|++.++ ..|++||+.++...  ...++..+     .+.++++.+  |++......+.+||||||||++||||++++|
T Consensus        79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p  151 (236)
T TIGR03864        79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP  151 (236)
T ss_pred             eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            99999875 56999999875321  12221111     122344444  5555566777899999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          534 KILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      +++||||||++||+.+.+.+.+.|+++.  +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus       152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA  222 (236)
T ss_pred             CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence            9999999999999999999999999885  47999999999999988999999999999999999888765

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-41  Score=378.11  Aligned_cols=220  Identities=32%  Similarity=0.512  Sum_probs=187.8

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~--i~~ 1077 (1253)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++..  .+.
T Consensus         7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (259)
T PRK14260          7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI   83 (259)
T ss_pred             eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence            5999999999963   4699999999999999999999999999999999999985     48999999999864  345


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC------CCC-HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE------DAS-EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~------~~~-d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++||||++.+|+.|++||+.++..      +.. ++.+.++++.+++.+++..       .....+..||||||
T Consensus        84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~  156 (259)
T PRK14260         84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ  156 (259)
T ss_pred             HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence            678899999999999999999999986421      111 2334566777776544332       23345568999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEe-----CCEEEEec
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ-----QGKVAEIG 1224 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~-----~G~ive~G 1224 (1253)
                      ||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|+     +|++++.|
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~  236 (259)
T PRK14260        157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG  236 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence            9999999999999999999999999999999999999998778999999999999866 99999998     59999999


Q ss_pred             ChhHHhhccc
Q 000851         1225 SHEQLLRKEN 1234 (1253)
Q Consensus      1225 t~~eLl~~~~ 1234 (1253)
                      +++++.+.+.
T Consensus       237 ~~~~~~~~~~  246 (259)
T PRK14260        237 VTTQIFSNPL  246 (259)
T ss_pred             CHHHHhcCCC
Confidence            9999976433

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=3.3e-41  Score=369.28  Aligned_cols=209  Identities=26%  Similarity=0.466  Sum_probs=177.8

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++++|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus         1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~   77 (220)
T cd03265           1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI   77 (220)
T ss_pred             CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence            5789999999743  499999999999999999999999999999999999999999999999988653 3566788999


Q ss_pred             EeccCccCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      ++|++.++.. |++||+.++..  ...    .+++.++++..++.++...           ...+||||||||++||||+
T Consensus        78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~al  146 (220)
T cd03265          78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARSL  146 (220)
T ss_pred             ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence            9999998875 99999987421  111    2344555555555444333           3458999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchh
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      +.+|++|||||||++||+.+.+.+.+.|.++.+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            999999999999999999999999999998753  7899999999999876 899999999999999887664

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-41  Score=376.11  Aligned_cols=212  Identities=30%  Similarity=0.463  Sum_probs=185.1

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++...++++++
T Consensus         3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (258)
T PRK13548          3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA   79 (258)
T ss_pred             EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence            789999999973   46999999999999999999999999999999999999999999999999998888888889999


Q ss_pred             EEccCCCc-ccccHHHHhccCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPAL-FSTTIYENIKYGNEDA------SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~L-f~gTIreNl~~g~~~~------~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |+||++.+ ++.|++||+.++....      .++.+.++++..++.++..           .....||||||||++||||
T Consensus        80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a  148 (258)
T PRK13548         80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV  148 (258)
T ss_pred             EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence            99999987 6789999998753211      1234555666666544332           3346899999999999999


Q ss_pred             hc------cCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1159 IL------KNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1159 Ll------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      |+      ++|++|||||||++||+.+.+.+.+.|++..  +++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (258)
T PRK13548        149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV  228 (258)
T ss_pred             HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence            99      5999999999999999999999999999875  47899999999999865 999999999999999999998


Q ss_pred             hh
Q 000851         1230 LR 1231 (1253)
Q Consensus      1230 l~ 1231 (1253)
                      .+
T Consensus       229 ~~  230 (258)
T PRK13548        229 LT  230 (258)
T ss_pred             hC
Confidence            76

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=2.1e-41  Score=374.35  Aligned_cols=216  Identities=29%  Similarity=0.481  Sum_probs=182.7

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH-HhcccE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG  455 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~  455 (1253)
                      ++++||+++|+++  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus         1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (232)
T cd03218           1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG   78 (232)
T ss_pred             CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence            4789999999743  4999999999999999999999999999999999999999999999999988776554 356799


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000851          456 LVSQEPALFAT-SIANNILLGKEDA--SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN  532 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~  532 (1253)
                      |++|++.+|.. |++||+.++.+..  ..++..+     .+++.++.+  |++........+||||||||++||||++.+
T Consensus        79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~  151 (232)
T cd03218          79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN  151 (232)
T ss_pred             EecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999986 9999998754211  1111111     122344444  555556667789999999999999999999


Q ss_pred             CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       533 p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence            99999999999999999999999999875 47899999999987765 89999999999999999888754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-41  Score=375.67  Aligned_cols=223  Identities=32%  Similarity=0.530  Sum_probs=190.7

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCCC--CHH
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRTL--NLR 1078 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~i--~~~ 1078 (1253)
                      ++++||+++|+   +.++|+|+||+|++||++||+|+||||||||+++|+|+.+     |++|+|.+||.++...  +..
T Consensus         4 l~~~~v~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   80 (250)
T PRK14266          4 IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV   80 (250)
T ss_pred             EEEEeEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence            78999999996   3469999999999999999999999999999999999975     3899999999998753  456


Q ss_pred             HHhcceEEEccCCCcccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1079 SLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1079 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~-~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      .+|++++|+||+|.+|+.|++||+.++..  .. +    ++++.++++.+++.+++..       .++..+.+|||||||
T Consensus        81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q  153 (250)
T PRK14266         81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ  153 (250)
T ss_pred             HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence            78999999999999999999999986521  11 1    2345566777777655442       133456789999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      |++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14266        154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF  233 (250)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998778999999999999866 9999999999999999999997


Q ss_pred             hcccchHH
Q 000851         1231 RKENGIYK 1238 (1253)
Q Consensus      1231 ~~~~g~y~ 1238 (1253)
                      ..+.+.+.
T Consensus       234 ~~~~~~~~  241 (250)
T PRK14266        234 INPKDKRT  241 (250)
T ss_pred             hCCCChHH
Confidence            65555443

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-41  Score=379.72  Aligned_cols=216  Identities=31%  Similarity=0.559  Sum_probs=187.2

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCC---cEEEECCeeCCCCCHHHHhc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS---GKILLDGHDLKSLQLKWLRE  452 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~i~~~g~~~~~~~~~~~r~  452 (1253)
                      .|+++|++|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++   |+|.++|.++...+...+++
T Consensus         5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~   84 (282)
T PRK13640          5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE   84 (282)
T ss_pred             eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence            589999999997533359999999999999999999999999999999999999998   89999999998777777888


Q ss_pred             ccEEEeccCc--cCcccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          453 QMGLVSQEPA--LFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       453 ~i~~v~Q~~~--lf~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      +||||+|++.  +++.|+.||+.++.+.  .+.    +++.++++..++.++....           ..+||||||||++
T Consensus        85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~G~~qrv~  153 (282)
T PRK13640         85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-----------PANLSGGQKQRVA  153 (282)
T ss_pred             heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHH
Confidence            9999999984  5678999999986432  223    2355566666665544443           4689999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |||||+.+|++|||||||++||+.+.+.+.+.|+++.+  |+|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus       154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  233 (282)
T PRK13640        154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK  233 (282)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999999998753  7899999999999988999999999999999999887653

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-41  Score=376.83  Aligned_cols=218  Identities=30%  Similarity=0.467  Sum_probs=184.5

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCC--CCCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLK--SLQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~--~~~~~  448 (1253)
                      .|+++||+++|++.  ++|+|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++.  +.+..
T Consensus         4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   81 (253)
T PRK14267          4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI   81 (253)
T ss_pred             eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence            48999999999753  499999999999999999999999999999999999987     4999999999986  44556


Q ss_pred             HHhcccEEEeccCccCcc-cHHHHHhcCCC--C--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHH
Q 000851          449 WLREQMGLVSQEPALFAT-SIANNILLGKE--D--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ  519 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~--~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq  519 (1253)
                      .+|++++|++|++.+|.. |+.||+.++..  .  ...    +++.++++..++.+++       .......+.+|||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~  154 (253)
T PRK14267         82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQ  154 (253)
T ss_pred             HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHH
Confidence            778899999999999976 99999987531  1  011    2334444444433222       123455677899999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcch
Q 000851          520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD  598 (1253)
Q Consensus       520 ~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~  598 (1253)
                      |||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus       155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  234 (253)
T PRK14267        155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK  234 (253)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999998778999999999999865 89999999999999999998


Q ss_pred             hhhc
Q 000851          599 LISK  602 (1253)
Q Consensus       599 l~~~  602 (1253)
                      +...
T Consensus       235 ~~~~  238 (253)
T PRK14267        235 VFEN  238 (253)
T ss_pred             HHhC
Confidence            8754

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-41  Score=379.57  Aligned_cols=215  Identities=31%  Similarity=0.482  Sum_probs=185.6

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus         7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   85 (269)
T PRK13648          7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI   85 (269)
T ss_pred             eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            48999999999742 24589999999999999999999999999999999999999999999999999888888899999


Q ss_pred             EEEccCCC--cccccHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHH
Q 000851         1085 GLVQQEPA--LFSTTIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156 (1253)
Q Consensus      1085 ~~V~Qdp~--Lf~gTIreNl~~g~~~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLA 1156 (1253)
                      +|+||+|.  ++..|+++|+.++...  ..    ++++.++++..++.++.           .....+||||||||++||
T Consensus        86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la  154 (269)
T PRK13648         86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA  154 (269)
T ss_pred             eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence            99999994  4556899999875321  12    22344555555544332           234468999999999999


Q ss_pred             HHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhh
Q 000851         1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1157 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      ||++.+|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus       155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  231 (269)
T PRK13648        155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD  231 (269)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence            999999999999999999999999999999998753  789999999999998899999999999999999999876

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-41  Score=378.48  Aligned_cols=216  Identities=29%  Similarity=0.566  Sum_probs=184.9

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .++++|++++|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.|+
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~   86 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG   86 (271)
T ss_pred             EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence            48999999999643345999999999999999999999999999999999999999999999999998777778889999


Q ss_pred             EEeccCc--cCcccHHHHHhcCCCC--CCHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          456 LVSQEPA--LFATSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       456 ~v~Q~~~--lf~~ti~~ni~~g~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      ||+|++.  ++..|++||+.++...  .+.+    ++.++++..++.+++           .....+||||||||++|||
T Consensus        87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~lar  155 (271)
T PRK13632         87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQRVAIAS  155 (271)
T ss_pred             EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHHHHHHH
Confidence            9999983  4567999999886321  2222    234444555554444           3445689999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||+.+|++|||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus       156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  232 (271)
T PRK13632        156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN  232 (271)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence            99999999999999999999999999999998753  4899999999999888999999999999999998887653

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=2.7e-41  Score=375.38  Aligned_cols=218  Identities=33%  Similarity=0.559  Sum_probs=182.8

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++||+++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (242)
T cd03295           1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY   79 (242)
T ss_pred             CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence            4789999999752 349999999999999999999999999999999999999999999999999988777778889999


Q ss_pred             EeccCccCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHhcCCCCccc--cccCCCCCCChHHHHHHHHHHHhcc
Q 000851          457 VSQEPALFA-TSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQT--QVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       457 v~Q~~~lf~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~g~~g~~LSgGq~qriaiARal~~  531 (1253)
                      ++|++.+|. .|++||+.++...  ...++..     ..+.+.++.+  |+..  ...+.+.+||||||||++||||+++
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~  152 (242)
T cd03295          80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAA  152 (242)
T ss_pred             EccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence            999999986 5999999875321  1111111     1112333333  3332  3456678999999999999999999


Q ss_pred             CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       532 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      +|++|||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  226 (242)
T cd03295         153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS  226 (242)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence            9999999999999999999999999998853  7999999999998765 899999999999999998887643

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8e-41  Score=377.42  Aligned_cols=220  Identities=29%  Similarity=0.494  Sum_probs=186.9

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCCCC-HH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTLN-LR 1078 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~i~-~~ 1078 (1253)
                      .++++||+++|+   +.++|+|+||+|++||++||+|+||||||||+++|.|+++|     ++|+|.+||.++.+.+ ..
T Consensus        21 ~l~i~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   97 (276)
T PRK14271         21 AMAAVNLTLGFA---GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL   97 (276)
T ss_pred             EEEEeeEEEEEC---CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence            589999999997   34699999999999999999999999999999999999986     6999999999987663 45


Q ss_pred             HHhcceEEEccCCCcccccHHHHhccCCC---CCCHHHHH----HHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1079 SLRRKIGLVQQEPALFSTTIYENIKYGNE---DASEIELM----KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1079 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~---~~~d~ei~----~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      .+|++++|+||+|.+|+.|+++|+.++..   ..++++..    +.++..++.       ..+++.+...+.+|||||||
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~~~~~LSgGq~q  170 (276)
T PRK14271         98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-------DAVKDRLSDSPFRLSGGQQQ  170 (276)
T ss_pred             HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC-------chhhhHhhCCcccCCHHHHH
Confidence            67899999999999999999999987531   12333332    223333332       22223445667789999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      |++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus       171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~  250 (276)
T PRK14271        171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF  250 (276)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999988767899999999999865 9999999999999999999998


Q ss_pred             hccc
Q 000851         1231 RKEN 1234 (1253)
Q Consensus      1231 ~~~~ 1234 (1253)
                      +.+.
T Consensus       251 ~~~~  254 (276)
T PRK14271        251 SSPK  254 (276)
T ss_pred             hCcC
Confidence            7433

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.5e-41  Score=391.92  Aligned_cols=210  Identities=28%  Similarity=0.433  Sum_probs=177.8

Q ss_pred             cccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCc----cCCCCCHHHH---h-cceEEEccCCC
Q 000851         1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY----DIRTLNLRSL---R-RKIGLVQQEPA 1092 (1253)
Q Consensus      1021 ~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~----di~~i~~~~l---R-~~i~~V~Qdp~ 1092 (1253)
                      ..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||.    ++...+...+   | ++|+||+|++.
T Consensus        37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~  116 (382)
T TIGR03415        37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA  116 (382)
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence            35799999999999999999999999999999999999999999999995    6777766554   3 58999999999


Q ss_pred             ccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000851         1093 LFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165 (1253)
Q Consensus      1093 Lf~-gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1165 (1253)
                      +|+ .|++||+.++..  ..+    .+...++++.+++.++..+           ...+||||||||++|||||+.+|+|
T Consensus       117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LARALa~~P~I  185 (382)
T TIGR03415       117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLARAFAMDADI  185 (382)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            998 799999987631  112    2345566666666554433           3357999999999999999999999


Q ss_pred             EEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhhcccchHHHHH
Q 000851         1166 LLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1166 LlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~L~ 1241 (1253)
                      ||||||||+||+.+.+.+++.|.+..+  ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.+.+
T Consensus       186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~  264 (382)
T TIGR03415       186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF  264 (382)
T ss_pred             EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHHH
Confidence            999999999999999999999998753  789999999999985 5999999999999999999999875555454433

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-41  Score=380.25  Aligned_cols=212  Identities=29%  Similarity=0.454  Sum_probs=181.1

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCC--CCCHHHHhcc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIR--TLNLRSLRRK 1083 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~--~i~~~~lR~~ 1083 (1253)
                      |+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.  ..+...+|++
T Consensus         2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   78 (271)
T PRK13638          2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ   78 (271)
T ss_pred             eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence            789999999963   46999999999999999999999999999999999999999999999999985  3345678899


Q ss_pred             eEEEccCCC--cccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1084 IGLVQQEPA--LFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1084 i~~V~Qdp~--Lf~gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      ++||||+|.  +|..|+.+|+.++..  ..+.    +++.++++..++.++.           .....+||||||||++|
T Consensus        79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l  147 (271)
T PRK13638         79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI  147 (271)
T ss_pred             eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence            999999986  577899999986421  1222    2334455555554432           22346799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      ||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||++++|++|++++.|+++++..
T Consensus       148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (271)
T PRK13638        148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA  225 (271)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999999999999999999875 47899999999999965 99999999999999999999876

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-41  Score=375.11  Aligned_cols=218  Identities=31%  Similarity=0.511  Sum_probs=186.0

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCCC--CH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTL--NL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~i--~~ 1077 (1253)
                      .|+++|++++|+.   .++|+|+||+|++||.+||+|+||||||||+++|+|+++|     ++|+|.+||.++...  +.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (251)
T PRK14270          4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV   80 (251)
T ss_pred             EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence            5899999999963   4699999999999999999999999999999999999985     799999999998653  34


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCCC--C-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNED--A-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~--~-~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++|+||++.+|+.|++||+.++...  . +    .+++.++++.+++.+.+.       .........||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~  153 (251)
T PRK14270         81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ  153 (251)
T ss_pred             HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence            5678999999999999999999999865211  1 1    123455666665533222       223345678999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (251)
T PRK14270        154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI  233 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998777899999999999866 999999999999999999999


Q ss_pred             hhc
Q 000851         1230 LRK 1232 (1253)
Q Consensus      1230 l~~ 1232 (1253)
                      ...
T Consensus       234 ~~~  236 (251)
T PRK14270        234 FLE  236 (251)
T ss_pred             hcC
Confidence            764

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-41  Score=373.90  Aligned_cols=217  Identities=27%  Similarity=0.471  Sum_probs=184.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-Hhcc
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRK 1083 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~-lR~~ 1083 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +|++
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (241)
T PRK10895          3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG   79 (241)
T ss_pred             eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence            3889999999963   46999999999999999999999999999999999999999999999999998877644 5789


Q ss_pred             eEEEccCCCccc-ccHHHHhccCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000851         1084 IGLVQQEPALFS-TTIYENIKYGNE---DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 1159 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~-gTIreNl~~g~~---~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARAL 1159 (1253)
                      ++|+||++.+|+ .|++||+.++..   ..+.++.     ...+.++++.+  |++.........||||||||++|||||
T Consensus        80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral  152 (241)
T PRK10895         80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL  152 (241)
T ss_pred             eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence            999999999887 499999987521   1122211     12233444444  444445556678999999999999999


Q ss_pred             ccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1160 LKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1160 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      +++|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus       153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            99999999999999999999999999998865 48899999999988755 99999999999999999999875

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.1e-41  Score=381.51  Aligned_cols=215  Identities=33%  Similarity=0.560  Sum_probs=181.1

Q ss_pred             EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCC----CHHH
Q 000851         1006 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL----NLRS 1079 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i----~~~~ 1079 (1253)
                      |+++||+++|+...  ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...    +...
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK   82 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999997321  14699999999999999999999999999999999999999999999999998653    3456


Q ss_pred             HhcceEEEccCC--CcccccHHHHhccCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChhHH
Q 000851         1080 LRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIE----LMKATKAANAHGFISRMPEGYQS-HVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1080 lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d~e----i~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSgGQk 1150 (1253)
                      .|+.++|+||+|  .+|+.|++|||.++..  ..+.++    +.++++..+           ++. .......+||||||
T Consensus        83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~~LSgGq~  151 (287)
T PRK13641         83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVG-----------LSEDLISKSPFELSGGQM  151 (287)
T ss_pred             HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CChhHhhCCcccCCHHHH
Confidence            788999999998  5888899999986421  122222    233333333           331 23445568999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      ||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus       152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~  231 (287)
T PRK13641        152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE  231 (287)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999875 47899999999999865 99999999999999999999


Q ss_pred             Hhh
Q 000851         1229 LLR 1231 (1253)
Q Consensus      1229 Ll~ 1231 (1253)
                      +++
T Consensus       232 ~~~  234 (287)
T PRK13641        232 IFS  234 (287)
T ss_pred             Hhc
Confidence            876

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=2.9e-41  Score=380.10  Aligned_cols=212  Identities=33%  Similarity=0.536  Sum_probs=180.3

Q ss_pred             EEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHH----hcc
Q 000851          378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----REQ  453 (1253)
Q Consensus       378 ~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~  453 (1253)
                      .++|++++|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..++    +++
T Consensus        26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~  103 (269)
T cd03294          26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK  103 (269)
T ss_pred             hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence            466888888643  48999999999999999999999999999999999999999999999999987765443    457


Q ss_pred             cEEEeccCccCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          454 MGLVSQEPALFA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       454 i~~v~Q~~~lf~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      ++|++|++.+|. .|++||+.++...  ..    .+++.++++..++.+++...|           .+||||||||++||
T Consensus       104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA  172 (269)
T cd03294         104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA  172 (269)
T ss_pred             EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence            999999999885 5999999875311  11    234555566666555554443           48999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||++.+|++|||||||++||+.+.+.+.+.|.++.  +|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  251 (269)
T cd03294         173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN  251 (269)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999999999874  37999999999998865 899999999999999999998754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=2.8e-41  Score=372.65  Aligned_cols=211  Identities=38%  Similarity=0.612  Sum_probs=183.5

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+.   .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.  .++.++
T Consensus         1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~   75 (232)
T cd03300           1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN   75 (232)
T ss_pred             CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence            478999999973   469999999999999999999999999999999999999999999999999987654  368899


Q ss_pred             EEccCCCcccc-cHHHHhccCCC------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGNE------DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~~------~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |++|++.+|.+ |+++|+.++..      ...++++.++++..++.++..+.|           ..||||||||++||||
T Consensus        76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara  144 (232)
T cd03300          76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA  144 (232)
T ss_pred             EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence            99999999975 99999986421      111334556666666655554433           5899999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      |+++|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~  221 (232)
T cd03300         145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE  221 (232)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence            9999999999999999999999999999998753  8999999999999865 999999999999999999998764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=4.8e-41  Score=367.76  Aligned_cols=206  Identities=26%  Similarity=0.444  Sum_probs=175.0

Q ss_pred             EEEEEEEEECCCCCC--cccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          377 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~--~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      |+++||+++|++...  ++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++|+++
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence            689999999975421  49999999999999999999999999999999999999999999999999875 345678899


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          455 GLVSQEPALFAT-SIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      +|++|++.+|.. |++||+.+....  ...    +++.++++..           |++......+.+||||||||++|||
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lar  149 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL-----------GMEELLDRRVGGFSTGMRQKVAIAR  149 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHHhhhhhhcCHHHHHHHHHHH
Confidence            999999999985 999999764221  111    2333344444           3444445566789999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEee
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g  594 (1253)
                      |++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus       150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            9999999999999999999999999999999875 47999999999998865 8999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=4.1e-41  Score=365.41  Aligned_cols=203  Identities=25%  Similarity=0.469  Sum_probs=176.4

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  ..+++.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~   76 (208)
T cd03268           1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA   76 (208)
T ss_pred             CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence            478999999964  3499999999999999999999999999999999999999999999999988654  456778999


Q ss_pred             EeccCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          457 VSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       457 v~Q~~~lf~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      |+|++.+|. .|++||+.++..  ..+.+++.++++..++.+...           ..+.+||||||||++||||++.+|
T Consensus        77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p  145 (208)
T cd03268          77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNP  145 (208)
T ss_pred             ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCC
Confidence            999998885 699999987532  223456666777776655443           334689999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEee
Q 000851          534 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g  594 (1253)
                      +++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999999999875 47999999999999865 8999999999998765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.1e-41  Score=368.71  Aligned_cols=201  Identities=42%  Similarity=0.682  Sum_probs=172.0

Q ss_pred             EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEE
Q 000851         1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 1086 (1253)
Q Consensus      1007 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1086 (1253)
                      +++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus         1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (211)
T cd03225           1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL   79 (211)
T ss_pred             CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence            478999999732 2469999999999999999999999999999999999999999999999999988888888999999


Q ss_pred             EccCCC--cccccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1087 VQQEPA--LFSTTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1087 V~Qdp~--Lf~gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      +||++.  +++.|++||+.++..  ..+    ++++.+.++..++.++.           ......||||||||++||||
T Consensus        80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~lara  148 (211)
T cd03225          80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQRVAIAGV  148 (211)
T ss_pred             EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHHHHH
Confidence            999983  678899999987421  112    22344455555554433           33446899999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCE
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGK 1219 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ 1219 (1253)
                      |+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus       149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            999999999999999999999999999999875 47899999999999987 99999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-41  Score=380.10  Aligned_cols=216  Identities=30%  Similarity=0.508  Sum_probs=186.1

Q ss_pred             cEEEEEEEEECCCC----CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCC-HHHH
Q 000851          376 QIEFSEVCFAYPSR----PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWL  450 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~----~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~  450 (1253)
                      -++++|++|+|++.    ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.. ...+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   83 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI   83 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence            48999999999742    234999999999999999999999999999999999999999999999999987643 3557


Q ss_pred             hcccEEEeccCc--cCcccHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          451 REQMGLVSQEPA--LFATSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       451 r~~i~~v~Q~~~--lf~~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      |+.+|||+|+|.  +|..|+.+|+.|+...  .+    .+++.++++..++.+++.+.           ..+||||||||
T Consensus        84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qr  152 (280)
T PRK13633         84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQKQR  152 (280)
T ss_pred             hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHH
Confidence            889999999984  6777999999986321  12    23455566666665555444           35899999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhh
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      ++|||||+.+|++|||||||++||+.+...+.+.|+++.  +++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus       153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence            999999999999999999999999999999999999885  379999999999999889999999999999999999987


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       233 ~~  234 (280)
T PRK13633        233 KE  234 (280)
T ss_pred             cC
Confidence            65

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-41  Score=374.94  Aligned_cols=218  Identities=32%  Similarity=0.470  Sum_probs=185.2

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCCCCHHHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQLKWL  450 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~~~  450 (1253)
                      .++++||+++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...+...+
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   80 (250)
T PRK14247          3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL   80 (250)
T ss_pred             eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence            48999999999753  499999999999999999999999999999999999974     79999999999988777788


Q ss_pred             hcccEEEeccCccC-cccHHHHHhcCCCC----CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          451 REQMGLVSQEPALF-ATSIANNILLGKED----AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       451 r~~i~~v~Q~~~lf-~~ti~~ni~~g~~~----~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      |+.|+|++|++.+| ..|++||+.++...    ..    .+++.++++..++.+.+       +......+.+|||||||
T Consensus        81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q  153 (250)
T PRK14247         81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQQ  153 (250)
T ss_pred             hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHHH
Confidence            89999999999766 56999999875321    01    12344455555443222       12234556789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus       154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14247        154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF  233 (250)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence            99999999999999999999999999999999999999877899999999999986 48999999999999999999886


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       234 ~~  235 (250)
T PRK14247        234 TN  235 (250)
T ss_pred             cC
Confidence            54

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=2.8e-41  Score=368.58  Aligned_cols=202  Identities=35%  Similarity=0.532  Sum_probs=173.1

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCH---HHHhc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL---RSLRR 1082 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~---~~lR~ 1082 (1253)
                      |+++|++++|+.+  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.   ..+|+
T Consensus         1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   78 (214)
T cd03292           1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR   78 (214)
T ss_pred             CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence            4789999999632  469999999999999999999999999999999999999999999999999987764   34788


Q ss_pred             ceEEEccCCCccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1083 KIGLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      +++||||+|.+|+ .|++||+.++..  ..+    ++++.++++..++.+...+           ...+||||||||++|
T Consensus        79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l  147 (214)
T cd03292          79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAI  147 (214)
T ss_pred             heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHH
Confidence            9999999999998 599999987521  111    2345556666665544333           335799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEE
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~i 1220 (1253)
                      ||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus       148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999999874 58999999999999976 999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-41  Score=382.55  Aligned_cols=221  Identities=33%  Similarity=0.544  Sum_probs=181.6

Q ss_pred             cCcEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCC----C-
Q 000851         1003 KGNIELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT----L- 1075 (1253)
Q Consensus      1003 ~g~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~----i- 1075 (1253)
                      .+.|+++|++++|+.++  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..    . 
T Consensus         4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~   83 (289)
T PRK13645          4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK   83 (289)
T ss_pred             cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence            35799999999997432  1359999999999999999999999999999999999999999999999998852    2 


Q ss_pred             CHHHHhcceEEEccCC--CcccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHH--hCCCCccccccCCCCCCChhH
Q 000851         1076 NLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIELMKATKAANAHGFIS--RMPEGYQSHVGDRGVQLSGGQ 1149 (1253)
Q Consensus      1076 ~~~~lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d~ei~~al~~a~l~~~I~--~lp~gldt~vge~G~~LSgGQ 1149 (1253)
                      +...+|++|+|+||+|  .+|+.|++||+.++..  ....++..+.+     .+.++  .+|++   .......+|||||
T Consensus        84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~~L~~~---~~~~~~~~LS~Gq  155 (289)
T PRK13645         84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLVQLPED---YVKRSPFELSGGQ  155 (289)
T ss_pred             cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHcCCChh---HhcCChhhCCHHH
Confidence            3567889999999998  4778899999987532  12222222211     11222  22222   2334557899999


Q ss_pred             HHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecCh
Q 000851         1150 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1226 (1253)
Q Consensus      1150 kQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~ 1226 (1253)
                      |||++|||||+++|++|||||||++||+.+.+.+.+.|++..+  ++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus       156 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~  235 (289)
T PRK13645        156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP  235 (289)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999998753  7899999999999855 999999999999999999


Q ss_pred             hHHhh
Q 000851         1227 EQLLR 1231 (1253)
Q Consensus      1227 ~eLl~ 1231 (1253)
                      +++.+
T Consensus       236 ~~~~~  240 (289)
T PRK13645        236 FEIFS  240 (289)
T ss_pred             HHHhc
Confidence            98865

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-41  Score=377.83  Aligned_cols=214  Identities=29%  Similarity=0.447  Sum_probs=187.6

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcc
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~ 1083 (1253)
                      ..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++
T Consensus         6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (265)
T PRK10253          6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR   82 (265)
T ss_pred             cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence            36999999999973   469999999999999999999999999999999999999999999999999988888888899


Q ss_pred             eEEEccCCCccc-ccHHHHhccCC-CC---------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000851         1084 IGLVQQEPALFS-TTIYENIKYGN-ED---------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~-gTIreNl~~g~-~~---------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQr 1152 (1253)
                      ++|+||++.+|. .|++||+.++. +.         ..++.+.++++..++.++..           ....+||||||||
T Consensus        83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qr  151 (265)
T PRK10253         83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQR  151 (265)
T ss_pred             eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHH
Confidence            999999998875 69999998752 11         11234566666666655433           3446899999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ++||||++++|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (265)
T PRK10253        152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI  231 (265)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999998753  7899999999998865 999999999999999999998


Q ss_pred             hh
Q 000851         1230 LR 1231 (1253)
Q Consensus      1230 l~ 1231 (1253)
                      ..
T Consensus       232 ~~  233 (265)
T PRK10253        232 VT  233 (265)
T ss_pred             hh
Confidence            75

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-41  Score=386.35  Aligned_cols=228  Identities=26%  Similarity=0.395  Sum_probs=185.9

Q ss_pred             EEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC----CCccEEEECCccCCCCCHHHH
Q 000851         1006 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD----PISGTVLIDGYDIRTLNLRSL 1080 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~----p~~G~I~idG~di~~i~~~~l 1080 (1253)
                      ++++||+++|+.+.. .++|+||||+|++||++||||+||||||||+++|+|+++    |++|+|.+||.|+.+++.+.+
T Consensus         4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~   83 (326)
T PRK11022          4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER   83 (326)
T ss_pred             EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            799999999974322 369999999999999999999999999999999999998    489999999999999887665


Q ss_pred             h----cceEEEccCCC--ccc-ccHHHH----hccCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000851         1081 R----RKIGLVQQEPA--LFS-TTIYEN----IKYGNE---DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 1146 (1253)
Q Consensus      1081 R----~~i~~V~Qdp~--Lf~-gTIreN----l~~g~~---~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1146 (1253)
                      |    ++|+||||+|.  +++ -|+.+|    +.....   ....+++.++++.+++.+..        ........+||
T Consensus        84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS  155 (326)
T PRK11022         84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS  155 (326)
T ss_pred             HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence            4    37999999995  443 355544    433211   11234456666666664321        12334557899


Q ss_pred             hhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhh-ccCEEEEEeCCEEEEe
Q 000851         1147 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEI 1223 (1253)
Q Consensus      1147 gGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~ 1223 (1253)
                      ||||||++|||||+.+|++||+||||++||+.+++.+.+.|+++.+  +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus       156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~  235 (326)
T PRK11022        156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET  235 (326)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999998753  789999999999985 5999999999999999


Q ss_pred             cChhHHhhcccchHHHHH
Q 000851         1224 GSHEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1224 Gt~~eLl~~~~g~y~~L~ 1241 (1253)
                      |+++++++++...|.+.+
T Consensus       236 g~~~~~~~~p~hpyt~~l  253 (326)
T PRK11022        236 GKAHDIFRAPRHPYTQAL  253 (326)
T ss_pred             CCHHHHhhCCCChHHHHH
Confidence            999999986666666543

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=1.9e-41  Score=369.36  Aligned_cols=198  Identities=30%  Similarity=0.530  Sum_probs=169.3

Q ss_pred             EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEE
Q 000851         1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 1086 (1253)
Q Consensus      1007 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1086 (1253)
                      +++||+++|+.   .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.     .+|++++|
T Consensus         1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~   72 (213)
T cd03235           1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY   72 (213)
T ss_pred             CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence            36899999963   46999999999999999999999999999999999999999999999998764     47889999


Q ss_pred             EccCCCc---ccccHHHHhccCCCC----------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1087 VQQEPAL---FSTTIYENIKYGNED----------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1087 V~Qdp~L---f~gTIreNl~~g~~~----------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      |||+|.+   |+.|++||+.++...          ..++++.++++..++.++..+           ...+||||||||+
T Consensus        73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv  141 (213)
T cd03235          73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV  141 (213)
T ss_pred             eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence            9999986   568999999875321          112345666666666554433           3357999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      +|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus       142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            99999999999999999999999999999999999875 67899999999999866 9999999886 55554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.9e-41  Score=381.32  Aligned_cols=219  Identities=33%  Similarity=0.538  Sum_probs=182.1

Q ss_pred             EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCC----CHHH
Q 000851         1006 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL----NLRS 1079 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i----~~~~ 1079 (1253)
                      |+++||+++|+...  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...    +...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            78999999997422  14699999999999999999999999999999999999999999999999998764    3467


Q ss_pred             HhcceEEEccCC--CcccccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChhHHHHHH
Q 000851         1080 LRRKIGLVQQEP--ALFSTTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1080 lR~~i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d~ei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSgGQkQrla 1154 (1253)
                      +|++|+|+||+|  .+|+.|++||+.++..  ..+.++..+.     +.++++.+  |++ ........+||||||||++
T Consensus        83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~  155 (280)
T PRK13649         83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA  155 (280)
T ss_pred             HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence            889999999998  6888999999986421  1233332211     11222222  332 1234456789999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      |||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||++++|++|++++.|+++++++
T Consensus       156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (280)
T PRK13649        156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ  234 (280)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999999999999999999999875 47899999999999865 99999999999999999999876

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-41  Score=377.05  Aligned_cols=216  Identities=32%  Similarity=0.522  Sum_probs=185.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++|++++|++....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++|+
T Consensus         7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   86 (269)
T PRK13648          7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG   86 (269)
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence            48999999999754334999999999999999999999999999999999999999999999999998888778889999


Q ss_pred             EEeccCc-cC-cccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          456 LVSQEPA-LF-ATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       456 ~v~Q~~~-lf-~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      ||+|+|. +| ..|+++|+.++...  ...    +++.++++..++.++           ....+.+||||||||++|||
T Consensus        87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~lar  155 (269)
T PRK13648         87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQRVAIAG  155 (269)
T ss_pred             EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHHHH
Confidence            9999985 44 56899999886432  122    233344444444332           33455689999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |++.+|++|||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus       156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  232 (269)
T PRK13648        156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH  232 (269)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence            99999999999999999999999999999998753  7899999999999888999999999999999999988654

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=3.5e-41  Score=385.06  Aligned_cols=214  Identities=29%  Similarity=0.504  Sum_probs=180.8

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      ..|+++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus         6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i   82 (306)
T PRK13537          6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV   82 (306)
T ss_pred             ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence            35999999999974  34999999999999999999999999999999999999999999999999987654 4578899


Q ss_pred             EEEeccCccCc-ccHHHHHhcCCCC--CCHHH----HHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          455 GLVSQEPALFA-TSIANNILLGKED--ASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       455 ~~v~Q~~~lf~-~ti~~ni~~g~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      |||||++.++. .|++||+.+....  .+..+    +.++++..       ++++..++.+    .+||||||||++|||
T Consensus        83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~----~~LS~G~~qrl~la~  151 (306)
T PRK13537         83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA-------KLENKADAKV----GELSGGMKRRLTLAR  151 (306)
T ss_pred             EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchHhcCch----hhCCHHHHHHHHHHH
Confidence            99999999886 5999999853211  12222    22223322       2333334444    579999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||+.+|++|||||||++||+.+.+.+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            9999999999999999999999999999999985 47999999999999976 899999999999999999998654

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=3.9e-41  Score=387.48  Aligned_cols=229  Identities=28%  Similarity=0.465  Sum_probs=187.7

Q ss_pred             cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---ccEEEECCccCCCCCHHHH
Q 000851         1005 NIELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---SGTVLIDGYDIRTLNLRSL 1080 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~---~G~I~idG~di~~i~~~~l 1080 (1253)
                      -++++|++++|+.+. ..++++||||+|++||++||+|+||||||||+++|+|+++|.   +|+|.+||.++..++...+
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~   91 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL   91 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            489999999996432 246999999999999999999999999999999999999996   9999999999999887765


Q ss_pred             h----cceEEEccCC--Cccc-ccHHHHhccC---CCCCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000851         1081 R----RKIGLVQQEP--ALFS-TTIYENIKYG---NEDASEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 1146 (1253)
Q Consensus      1081 R----~~i~~V~Qdp--~Lf~-gTIreNl~~g---~~~~~d~e----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1146 (1253)
                      |    ++|+||+|+|  .+++ .|+.+|+...   ....+.++    +.+.++.++       +|++. ..++..+.+||
T Consensus        92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~-~~~~~~p~~LS  163 (330)
T PRK09473         92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEAR-KRMKMYPHEFS  163 (330)
T ss_pred             HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChH-HHhcCCcccCC
Confidence            3    4899999999  4554 4777776421   11123222    233333333       34332 22456678899


Q ss_pred             hhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 000851         1147 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1223 (1253)
Q Consensus      1147 gGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~ 1223 (1253)
                      ||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.+  +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus       164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~  243 (330)
T PRK09473        164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY  243 (330)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999998754  7899999999999965 999999999999999


Q ss_pred             cChhHHhhcccchHHHHH
Q 000851         1224 GSHEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1224 Gt~~eLl~~~~g~y~~L~ 1241 (1253)
                      |+++++++.+...|.+.+
T Consensus       244 g~~~~i~~~p~~pyt~~l  261 (330)
T PRK09473        244 GNARDVFYQPSHPYSIGL  261 (330)
T ss_pred             CCHHHHHhCCCCHHHHHH
Confidence            999999987666676643

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.2e-41  Score=377.73  Aligned_cols=213  Identities=30%  Similarity=0.475  Sum_probs=185.7

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .++++||+++|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus        11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   88 (265)
T PRK10575         11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA   88 (265)
T ss_pred             eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence            58999999999743  4999999999999999999999999999999999999999999999999998888888888999


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCC----------CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          456 LVSQEPALFAT-SIANNILLGKED----------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      |++|++.++.. |+.||+.++...          ...+++.++++..++.+++...           ..+||||||||++
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~  157 (265)
T PRK10575         89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRAW  157 (265)
T ss_pred             EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHHH
Confidence            99999877665 999999976321          1123455666666665544433           3489999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ||||++.+|++|||||||++||+.+.+.+.+.|.++.+  ++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus       158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (265)
T PRK10575        158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR  237 (265)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence            99999999999999999999999999999999998853  7899999999999865 89999999999999999988765

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.5e-41  Score=374.20  Aligned_cols=219  Identities=31%  Similarity=0.547  Sum_probs=186.6

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCC-CCCHH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIR-TLNLR 1078 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~-~i~~~ 1078 (1253)
                      .++++|++++|+   +.++|+|+||+|++||++||+|+||||||||+++|.|+++|     ++|+|.+||.++. ..+..
T Consensus         3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   79 (249)
T PRK14253          3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA   79 (249)
T ss_pred             eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence            488999999997   34699999999999999999999999999999999999986     5999999999985 45667


Q ss_pred             HHhcceEEEccCCCcccccHHHHhccCCC--CCC-----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHH
Q 000851         1079 SLRRKIGLVQQEPALFSTTIYENIKYGNE--DAS-----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ 1151 (1253)
Q Consensus      1079 ~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~~-----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQ 1151 (1253)
                      .+|+.++|+||++.+|+.|++||+.++..  ...     ++++.++++.+++.+.+       .........+|||||||
T Consensus        80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q  152 (249)
T PRK14253         80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ  152 (249)
T ss_pred             HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence            88999999999999999999999987521  111     12334455555544322       22334455689999999


Q ss_pred             HHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1152 RVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1152 rlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      |++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus       153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (249)
T PRK14253        153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF  232 (249)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998777999999999999876 9999999999999999999987


Q ss_pred             hcc
Q 000851         1231 RKE 1233 (1253)
Q Consensus      1231 ~~~ 1233 (1253)
                      .++
T Consensus       233 ~~~  235 (249)
T PRK14253        233 SNP  235 (249)
T ss_pred             cCC
Confidence            543

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=4.8e-41  Score=384.76  Aligned_cols=213  Identities=29%  Similarity=0.466  Sum_probs=180.4

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+   +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus         4 ~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i   79 (303)
T TIGR01288         4 AIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI   79 (303)
T ss_pred             EEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence            489999999996   34699999999999999999999999999999999999999999999999998654 35678999


Q ss_pred             EEEccCCCccc-ccHHHHhccCC--CCCCHHHH----HHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFS-TTIYENIKYGN--EDASEIEL----MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~-gTIreNl~~g~--~~~~d~ei----~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      +|+||++.+|. .|++||+.+..  ...+..+.    .++++..++       ++.+++.+    .+||||||||++|||
T Consensus        80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~~~~~~~----~~LSgG~~qrv~la~  148 (303)
T TIGR01288        80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADVRV----ALLSGGMKRRLTLAR  148 (303)
T ss_pred             EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-------hhHhcCch----hhCCHHHHHHHHHHH
Confidence            99999999885 69999997421  11233322    223333332       33334443    579999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ||+.+|++|||||||++||+.+.+.+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  225 (303)
T TIGR01288       149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE  225 (303)
T ss_pred             HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            9999999999999999999999999999999874 48899999999999965 999999999999999999999763

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.3e-41  Score=378.09  Aligned_cols=214  Identities=29%  Similarity=0.530  Sum_probs=185.4

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++||+++|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus         4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (277)
T PRK13652          4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL   82 (277)
T ss_pred             EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence            7899999999632 249999999999999999999999999999999999999999999999999987777778889999


Q ss_pred             EeccC--ccCcccHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          457 VSQEP--ALFATSIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       457 v~Q~~--~lf~~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      |+|++  .+|+.|+.||+.++..  ..+.    +++.++++..++.+++.+.           +..||||||||++||||
T Consensus        83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~lara  151 (277)
T PRK13652         83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIAGV  151 (277)
T ss_pred             EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence            99998  4778899999987532  1222    2345556666655544433           45899999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |+.+|++|||||||++||+.+.+.+.+.++++.+  ++|+|++||+++.+. .||+|++|++|++++.|++++++..
T Consensus       152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  228 (277)
T PRK13652        152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ  228 (277)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence            9999999999999999999999999999998753  789999999999985 5899999999999999999998764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-40  Score=376.44  Aligned_cols=214  Identities=29%  Similarity=0.532  Sum_probs=182.5

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCC-HHHHhcccE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ-LKWLREQMG  455 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~  455 (1253)
                      ++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.|+
T Consensus         2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (274)
T PRK13644          2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG   80 (274)
T ss_pred             EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence            6899999999632 34999999999999999999999999999999999999999999999999997765 456788999


Q ss_pred             EEeccCc--cCcccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          456 LVSQEPA--LFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       456 ~v~Q~~~--lf~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      ||+|+|.  +++.|+.|||.++...  .+.    +++.++++..++.+           .....+..||||||||++|||
T Consensus        81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~lar  149 (274)
T PRK13644         81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-----------YRHRSPKTLSGGQGQCVALAG  149 (274)
T ss_pred             EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-----------HhcCCcccCCHHHHHHHHHHH
Confidence            9999985  5677999999886422  122    23334444444433           344455689999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEeeCcchhhhc
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus       150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  225 (274)
T PRK13644        150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD  225 (274)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence            9999999999999999999999999999999875 48999999999999988999999999999999998887543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.5e-41  Score=369.85  Aligned_cols=211  Identities=36%  Similarity=0.551  Sum_probs=181.1

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+.   .++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.  .|+.++
T Consensus         1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~   75 (237)
T TIGR00968         1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG   75 (237)
T ss_pred             CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence            478999999973   469999999999999999999999999999999999999999999999999876653  478899


Q ss_pred             EEccCCCcccc-cHHHHhccCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGNED--AS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~~~--~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |+||+|.+|++ |++||+.++...  .+    ++++.++++..++.++..           ....+|||||+||++||||
T Consensus        76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~lara  144 (237)
T TIGR00968        76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARA  144 (237)
T ss_pred             EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence            99999999975 999999875321  11    233444455554443333           3346799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      |+++|+++||||||++||+++++.+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus       145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~  221 (237)
T TIGR00968       145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH  221 (237)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence            9999999999999999999999999999998654  7999999999999865 999999999999999999999763

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-41  Score=375.93  Aligned_cols=218  Identities=32%  Similarity=0.532  Sum_probs=184.4

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~--i~~ 1077 (1253)
                      .++++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++|     ++|+|.+||.++..  .+.
T Consensus         4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~   80 (258)
T PRK14241          4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP   80 (258)
T ss_pred             cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence            4899999999973   3699999999999999999999999999999999999974     69999999999853  445


Q ss_pred             HHHhcceEEEccCCCccc-ccHHHHhccCCC---CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhH
Q 000851         1078 RSLRRKIGLVQQEPALFS-TTIYENIKYGNE---DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 1149 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~---~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQ 1149 (1253)
                      ..+|+.++|++|++.+|+ .|++||+.++..   ..+    ++.+.++++..++.+.+       .........+|||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~  153 (258)
T PRK14241         81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ  153 (258)
T ss_pred             HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence            678899999999999997 599999986421   111    22344556566553322       123344557899999


Q ss_pred             HHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEe------CCEEEE
Q 000851         1150 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ------QGKVAE 1222 (1253)
Q Consensus      1150 kQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~------~G~ive 1222 (1253)
                      |||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+      +|+|++
T Consensus       154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~  233 (258)
T PRK14241        154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE  233 (258)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence            99999999999999999999999999999999999999998777899999999999865 99999997      899999


Q ss_pred             ecChhHHhhc
Q 000851         1223 IGSHEQLLRK 1232 (1253)
Q Consensus      1223 ~Gt~~eLl~~ 1232 (1253)
                      .|++++++..
T Consensus       234 ~~~~~~~~~~  243 (258)
T PRK14241        234 IDDTEKIFSN  243 (258)
T ss_pred             cCCHHHHHhC
Confidence            9999999764

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.4e-41  Score=375.21  Aligned_cols=218  Identities=29%  Similarity=0.453  Sum_probs=184.4

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC--C---CCcEEEECCeeCCC--CCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDLKS--LQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~~  448 (1253)
                      -|+++|++|.|++.  ++|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++..  .+..
T Consensus        12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~   89 (259)
T PRK14274         12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV   89 (259)
T ss_pred             eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence            48999999999743  49999999999999999999999999999999999997  3   69999999999863  3455


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCC---CHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDA---SMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+|+.|+|++|++.+|+.|++||+.++....   ..+    ++.++++..++.+++       .+.....+.+|||||||
T Consensus        90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q  162 (259)
T PRK14274         90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ  162 (259)
T ss_pred             HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence            6788999999999999899999998763211   112    233344444443322       22345667789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus       163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  242 (259)
T PRK14274        163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF  242 (259)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            999999999999999999999999999999999999998778999999999999865 8999999999999999999886


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      .+
T Consensus       243 ~~  244 (259)
T PRK14274        243 SN  244 (259)
T ss_pred             hC
Confidence            54

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.3e-41  Score=379.74  Aligned_cols=225  Identities=30%  Similarity=0.479  Sum_probs=187.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCCC--CH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRTL--NL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~i--~~ 1077 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+.+     |++|+|.+||.++...  +.
T Consensus        39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~  115 (286)
T PRK14275         39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE  115 (286)
T ss_pred             EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence            5899999999963   359999999999999999999999999999999999865     4999999999998643  33


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~-~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++||+|+|.+|+.|++||+.++..  .. +    ++++.++++..++.+.+.       .........||||||
T Consensus       116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~  188 (286)
T PRK14275        116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQQ  188 (286)
T ss_pred             HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHHH
Confidence            467899999999999999999999987521  11 1    123445555555432221       122345568999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus       189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~  268 (286)
T PRK14275        189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL  268 (286)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999988777899999999999865 999999999999999999999


Q ss_pred             hhcccchHHH
Q 000851         1230 LRKENGIYKQ 1239 (1253)
Q Consensus      1230 l~~~~g~y~~ 1239 (1253)
                      .+++...|.+
T Consensus       269 ~~~~~~~~~~  278 (286)
T PRK14275        269 FTNPKDRMTE  278 (286)
T ss_pred             HhCCCcHHHH
Confidence            8754444443

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-41  Score=376.23  Aligned_cols=221  Identities=30%  Similarity=0.499  Sum_probs=188.8

Q ss_pred             cCcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCC----
Q 000851         1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIR---- 1073 (1253)
Q Consensus      1003 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~---- 1073 (1253)
                      .+.|+++|++++|+.   .++|+|+||+|++||+++|+|+||||||||+++|.|+.+|     ++|+|.+||.++.    
T Consensus        14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~   90 (265)
T PRK14252         14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP   90 (265)
T ss_pred             CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence            457999999999973   3699999999999999999999999999999999999985     7999999998874    


Q ss_pred             CCCHHHHhcceEEEccCCCcccccHHHHhccCCC--C-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000851         1074 TLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE--D-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 1146 (1253)
Q Consensus      1074 ~i~~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~-----~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1146 (1253)
                      ..+...+|++++|+||++.+|++|++||+.++..  .     ..++++.++++.+++.+.+       ....+.....||
T Consensus        91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS  163 (265)
T PRK14252         91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLS  163 (265)
T ss_pred             ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCC
Confidence            2345578899999999999999999999986521  1     1134556666666554322       233445567899


Q ss_pred             hhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 000851         1147 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225 (1253)
Q Consensus      1147 gGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt 1225 (1253)
                      ||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus       164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~  243 (265)
T PRK14252        164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA  243 (265)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999998777899999999999965 99999999999999999


Q ss_pred             hhHHhhcc
Q 000851         1226 HEQLLRKE 1233 (1253)
Q Consensus      1226 ~~eLl~~~ 1233 (1253)
                      ++++....
T Consensus       244 ~~~~~~~~  251 (265)
T PRK14252        244 TDTIFIKP  251 (265)
T ss_pred             HHHHHhCC
Confidence            99997533

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=8.6e-41  Score=384.33  Aligned_cols=223  Identities=26%  Similarity=0.389  Sum_probs=185.4

Q ss_pred             cEEEEEEEEECCCC-----------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCC
Q 000851          376 QIEFSEVCFAYPSR-----------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS  444 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~-----------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~  444 (1253)
                      -++++|++++|+.+           ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~   87 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG   87 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence            48999999999631           1349999999999999999999999999999999999999999999999999988


Q ss_pred             CCHH---HHhcccEEEeccC--ccCc-ccHHHHHhcCC----CCCCHHHH----HHHHHHhCcHHHHhcCCCCccccccC
Q 000851          445 LQLK---WLREQMGLVSQEP--ALFA-TSIANNILLGK----EDASMDRV----IEAAKAANAHSFVEGLPDGYQTQVGE  510 (1253)
Q Consensus       445 ~~~~---~~r~~i~~v~Q~~--~lf~-~ti~~ni~~g~----~~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~g~  510 (1253)
                      .+..   .+|++|+||+|+|  .|++ .||.|||.++.    +..+.++.    .+.++..++.          +.....
T Consensus        88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~----------~~~~~~  157 (331)
T PRK15079         88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL----------PNLINR  157 (331)
T ss_pred             CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHhcC
Confidence            7654   3577899999998  4774 59999997642    12233332    3333333331          113355


Q ss_pred             CCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeC
Q 000851          511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKN  587 (1253)
Q Consensus       511 ~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~  587 (1253)
                      .+.+||||||||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+  +.|+|+|||+++.+.. ||+|+||++
T Consensus       158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~  237 (331)
T PRK15079        158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL  237 (331)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence            6678999999999999999999999999999999999999999999998854  7899999999999976 899999999


Q ss_pred             CEEEEeeCcchhhhcC-chHHH
Q 000851          588 GQVVESGTHVDLISKG-GEYAA  608 (1253)
Q Consensus       588 G~i~~~g~~~~l~~~~-~~y~~  608 (1253)
                      |+|++.|+.+++..+. ..|.+
T Consensus       238 G~ive~g~~~~i~~~~~~py~~  259 (331)
T PRK15079        238 GHAVELGTYDEVYHNPLHPYTK  259 (331)
T ss_pred             CEEEEEcCHHHHHcCCCCHHHH
Confidence            9999999999998753 34544

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.5e-41  Score=375.43  Aligned_cols=212  Identities=28%  Similarity=0.436  Sum_probs=184.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      ++++|++++|+   +.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus         2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   78 (256)
T TIGR03873         2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA   78 (256)
T ss_pred             ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence            78999999996   346999999999999999999999999999999999999999999999999999888888888999


Q ss_pred             EEccCCC-cccccHHHHhccCCCC----------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHH
Q 000851         1086 LVQQEPA-LFSTTIYENIKYGNED----------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1086 ~V~Qdp~-Lf~gTIreNl~~g~~~----------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrla 1154 (1253)
                      |+||++. .+..|++||+.++...          ..++++.++++..++.+..           ......||||||||++
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~  147 (256)
T TIGR03873        79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH  147 (256)
T ss_pred             EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence            9999996 4568999999875311          1122455556665554432           2344679999999999


Q ss_pred             HHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhh
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      ||||++.+|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus       148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (256)
T TIGR03873       148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT  226 (256)
T ss_pred             HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence            9999999999999999999999999999999999875 3789999999999995 599999999999999999999865

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=9.9e-41  Score=364.99  Aligned_cols=210  Identities=29%  Similarity=0.499  Sum_probs=187.1

Q ss_pred             EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCH----HHHhc
Q 000851         1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL----RSLRR 1082 (1253)
Q Consensus      1007 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~----~~lR~ 1082 (1253)
                      .+.|+.|+|+.+  .++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+.    ...|+
T Consensus         2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (218)
T cd03290           2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY   79 (218)
T ss_pred             eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence            567999999743  469999999999999999999999999999999999999999999999998876542    34577


Q ss_pred             ceEEEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000851         1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~ 1162 (1253)
                      .++|++|+|.+|+.|++||+.++.+ .++++..++++..++.+++..+|.|+++.++....+||||||||++||||++++
T Consensus        80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  158 (218)
T cd03290          80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN  158 (218)
T ss_pred             eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence            8999999999999999999998643 345667788888898888999999999999998999999999999999999999


Q ss_pred             CCEEEEecccCCCChHHHHHHHH--HHHHHc-CCceEEEEccCchhhhccCEEEEEeCCE
Q 000851         1163 PSILLLDEATSALDTASENLIQE--ALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGK 1219 (1253)
Q Consensus      1163 p~ILlLDEaTS~LD~~te~~I~~--~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ 1219 (1253)
                      |++|||||||++||+.+.+.+.+  .++... .+.|+|++||+++.+..||++++|++|+
T Consensus       159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            99999999999999999998887  454443 3689999999999998899999999984

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=372.71  Aligned_cols=219  Identities=32%  Similarity=0.560  Sum_probs=185.1

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCC--CCH
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL  447 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~  447 (1253)
                      +.|+++||+++|++.  ++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++.+  .+.
T Consensus         2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14240          2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV   79 (250)
T ss_pred             CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence            468999999999753  499999999999999999999999999999999999863     69999999999864  345


Q ss_pred             HHHhcccEEEeccCccCcccHHHHHhcCCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHH
Q 000851          448 KWLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK  520 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~  520 (1253)
                      ..+|+.++||+|++.+|+.|++||+.++....   .    .+++.++++..++.+.+       .......+.+||||||
T Consensus        80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~  152 (250)
T PRK14240         80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQQ  152 (250)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHHH
Confidence            56788999999999999899999998863211   1    22344444455443322       2234556778999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchh
Q 000851          521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       521 qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      ||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (250)
T PRK14240        153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL  232 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999998865 899999999999999999887


Q ss_pred             hhc
Q 000851          600 ISK  602 (1253)
Q Consensus       600 ~~~  602 (1253)
                      ...
T Consensus       233 ~~~  235 (250)
T PRK14240        233 FTN  235 (250)
T ss_pred             HhC
Confidence            643

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=5.6e-41  Score=365.84  Aligned_cols=203  Identities=33%  Similarity=0.571  Sum_probs=172.4

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++++|++.  ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..  +++++|
T Consensus         1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~   76 (213)
T cd03301           1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM   76 (213)
T ss_pred             CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence            4789999999753  499999999999999999999999999999999999999999999999998765432  467999


Q ss_pred             EeccCccCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFA-TSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~-~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      ++|++.+|. .|++||+.++...  ...    +++.++++..++.++           ......+||||||||++||||+
T Consensus        77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~laral  145 (213)
T cd03301          77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGRAI  145 (213)
T ss_pred             EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHHHH
Confidence            999999986 5999999875321  122    233344444444433           3444568999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEee
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g  594 (1253)
                      +.+|+++||||||++||+.+.+.+.+.|+++.  .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus       146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            99999999999999999999999999999875  37899999999999876 8999999999999875

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=6.4e-41  Score=354.14  Aligned_cols=178  Identities=35%  Similarity=0.658  Sum_probs=165.3

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++|+|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++|
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~   79 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV   79 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence            578999999975423599999999999999999999999999999999999999999999999988665 5667889999


Q ss_pred             EeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 000851          457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL  536 (1253)
Q Consensus       457 v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~il  536 (1253)
                      ++|++.+|+.|++||+                                       +.+||||||||++||||++++|++|
T Consensus        80 ~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~l  120 (178)
T cd03247          80 LNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPIV  120 (178)
T ss_pred             EccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999999999999998                                       3579999999999999999999999


Q ss_pred             EEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEee
Q 000851          537 LLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG  594 (1253)
Q Consensus       537 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g  594 (1253)
                      ||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus       121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG  178 (178)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999999999999999887789999999999999889999999999998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=7.9e-41  Score=366.85  Aligned_cols=208  Identities=30%  Similarity=0.517  Sum_probs=171.9

Q ss_pred             EEEEEEEEECCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH---Hh
Q 000851          377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR  451 (1253)
Q Consensus       377 i~~~~v~f~y~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r  451 (1253)
                      |+++||+++|++..  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...   +|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence            68999999996422  34999999999999999999999999999999999999999999999999998776543   33


Q ss_pred             -cccEEEeccCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          452 -EQMGLVSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       452 -~~i~~v~Q~~~lf~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                       +.|+||+|++.+|+ .|++||+.++..  .....+..+.     +.++++.+  |++........+||||||||++|||
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar  154 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER-----AYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR  154 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence             67999999999986 499999987421  1111111111     11233333  4444445556789999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhhcCEEEEEeCCEEE
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVV  591 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~  591 (1253)
                      |++.+|++|||||||++||+.+...+.+.|.++.  .++|+|++||+++.+..+|+|++|++|+++
T Consensus       155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            9999999999999999999999999999999885  378999999999999889999999999985

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.1e-41  Score=374.40  Aligned_cols=213  Identities=34%  Similarity=0.561  Sum_probs=180.8

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCC----------
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ----------  446 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----------  446 (1253)
                      |+++||+|+|++.  ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++          
T Consensus         1 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   78 (252)
T TIGR03005         1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD   78 (252)
T ss_pred             CEEEEEEEEeCCe--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence            5799999999743  4999999999999999999999999999999999999999999999999986543          


Q ss_pred             ---HHHHhcccEEEeccCccCc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCC
Q 000851          447 ---LKWLREQMGLVSQEPALFA-TSIANNILLGKE---DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQL  515 (1253)
Q Consensus       447 ---~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~g~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L  515 (1253)
                         ...+|+.++|++|++.+|. .|+.||+.++..   ....    +++.++++..           |++......+.+|
T Consensus        79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~L  147 (252)
T TIGR03005        79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV-----------GLADKADHMPAQL  147 (252)
T ss_pred             hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhHhhcChhhc
Confidence               2456889999999999885 699999987521   1111    2233333333           4444445566789


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000851          516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE  592 (1253)
Q Consensus       516 SgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~  592 (1253)
                      |||||||++|||||+.+|+++||||||++||+.++..+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  227 (252)
T TIGR03005       148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE  227 (252)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999998753  7899999999999864 89999999999999


Q ss_pred             eeCcchhhhc
Q 000851          593 SGTHVDLISK  602 (1253)
Q Consensus       593 ~g~~~~l~~~  602 (1253)
                      .|+++++...
T Consensus       228 ~g~~~~~~~~  237 (252)
T TIGR03005       228 QGKPDEIFRQ  237 (252)
T ss_pred             eCCHHHHhcC
Confidence            9999988654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.8e-41  Score=373.85  Aligned_cols=224  Identities=29%  Similarity=0.435  Sum_probs=191.5

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCCC--CH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRTL--NL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~i--~~ 1077 (1253)
                      .+.+++++++|.   +.++|+|+||+|++||++||+|+||||||||+++|.|+++|     ++|+|.+||.++...  +.
T Consensus         8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   84 (261)
T PRK14263          8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP   84 (261)
T ss_pred             eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence            488999999996   34699999999999999999999999999999999999987     799999999998643  44


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC-----CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE-----DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~-----~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQr 1152 (1253)
                      ..+|++++|+||++.+|..|++||+.++..     ....+++.++++.+++.+.+..       ..++...+||||||||
T Consensus        85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr  157 (261)
T PRK14263         85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR  157 (261)
T ss_pred             HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence            567889999999999999999999987531     1123456777777776554432       2345667899999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEe--------CCEEEEe
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ--------QGKVAEI 1223 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~--------~G~ive~ 1223 (1253)
                      ++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|+        +|++++.
T Consensus       158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~  237 (261)
T PRK14263        158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM  237 (261)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence            99999999999999999999999999999999999998778899999999999865 99999996        8999999


Q ss_pred             cChhHHhhcccchHH
Q 000851         1224 GSHEQLLRKENGIYK 1238 (1253)
Q Consensus      1224 Gt~~eLl~~~~g~y~ 1238 (1253)
                      |+++++++.+...+.
T Consensus       238 g~~~~~~~~~~~~~~  252 (261)
T PRK14263        238 GPTAQIFQNPREQLT  252 (261)
T ss_pred             CCHHHHHhCCCcHHH
Confidence            999999874443343

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9e-41  Score=374.57  Aligned_cols=220  Identities=25%  Similarity=0.455  Sum_probs=184.0

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHH-hcc
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRK 1083 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~l-R~~ 1083 (1253)
                      .++++||+++|+   +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus         5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (255)
T PRK11300          5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG   81 (255)
T ss_pred             eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence            489999999996   3469999999999999999999999999999999999999999999999999988876554 556


Q ss_pred             eEEEccCCCcccc-cHHHHhccCCCCCC--------------HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChh
Q 000851         1084 IGLVQQEPALFST-TIYENIKYGNEDAS--------------EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~g-TIreNl~~g~~~~~--------------d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgG 1148 (1253)
                      ++|+||+|.+|++ |++||+.++.....              +.+..+.  ...+.++++.+  |++........+||||
T Consensus        82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G  157 (255)
T PRK11300         82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYG  157 (255)
T ss_pred             eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence            9999999999985 99999997531100              0000000  11123334443  4555556667789999


Q ss_pred             HHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 000851         1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225 (1253)
Q Consensus      1149 QkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt 1225 (1253)
                      ||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+..+  ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus       158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~  237 (255)
T PRK11300        158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT  237 (255)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence            99999999999999999999999999999999999999998753  7899999999999866 99999999999999999


Q ss_pred             hhHHhh
Q 000851         1226 HEQLLR 1231 (1253)
Q Consensus      1226 ~~eLl~ 1231 (1253)
                      ++++..
T Consensus       238 ~~~~~~  243 (255)
T PRK11300        238 PEEIRN  243 (255)
T ss_pred             HHHHhh
Confidence            999875

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=9e-41  Score=376.43  Aligned_cols=214  Identities=25%  Similarity=0.461  Sum_probs=181.2

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH---HHhc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLRE  452 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~  452 (1253)
                      -|+++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .+++
T Consensus         7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (269)
T PRK11831          7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK   84 (269)
T ss_pred             eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence            4899999999974  3499999999999999999999999999999999999999999999999998766543   3577


Q ss_pred             ccEEEeccCccCcc-cHHHHHhcCCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          453 QMGLVSQEPALFAT-SIANNILLGKED---ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       453 ~i~~v~Q~~~lf~~-ti~~ni~~g~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      +|+|++|++.+|+. |+.||+.++...   .+.+    ++.+.++..           |+.........+||||||||++
T Consensus        85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qrv~  153 (269)
T PRK11831         85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV-----------GLRGAAKLMPSELSGGMARRAA  153 (269)
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHHH
Confidence            89999999999986 999999875211   1111    222333333           3333334455689999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |||||+.+|++|||||||++||+.+.+.+.+.|+++.+  |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  233 (269)
T PRK11831        154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA  233 (269)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999998753  7899999999999876 89999999999999999999876


Q ss_pred             c
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      .
T Consensus       234 ~  234 (269)
T PRK11831        234 N  234 (269)
T ss_pred             C
Confidence            4

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-41  Score=379.07  Aligned_cols=213  Identities=35%  Similarity=0.566  Sum_probs=181.8

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCC--CCHHHHhcc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT--LNLRSLRRK 1083 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~--i~~~~lR~~ 1083 (1253)
                      |+++||+++|+.  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..  .+...+|++
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (275)
T PRK13639          2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT   79 (275)
T ss_pred             EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence            789999999963  2469999999999999999999999999999999999999999999999999852  234567899


Q ss_pred             eEEEccCC--CcccccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1084 IGLVQQEP--ALFSTTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1084 i~~V~Qdp--~Lf~gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      |+|+||+|  .+|+.|++||+.++..  ..+.    +++.++++..++.++.           .....+||||||||++|
T Consensus        80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~l  148 (275)
T PRK13639         80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAI  148 (275)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHH
Confidence            99999998  4788999999986421  1222    2344555555554332           22345799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhh
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~ 1231 (1253)
                      ||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus       149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (275)
T PRK13639        149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS  226 (275)
T ss_pred             HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999999999999999999875 48899999999999875 99999999999999999999876

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=7.6e-41  Score=371.50  Aligned_cols=217  Identities=31%  Similarity=0.553  Sum_probs=182.3

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCC--CHHHHhccc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL--QLKWLREQM  454 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~--~~~~~r~~i  454 (1253)
                      ++++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  +..++++.+
T Consensus         2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   79 (240)
T PRK09493          2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA   79 (240)
T ss_pred             EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence            689999999974  3499999999999999999999999999999999999999999999999998764  345678899


Q ss_pred             EEEeccCccCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000851          455 GLVSQEPALFA-TSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL  530 (1253)
Q Consensus       455 ~~v~Q~~~lf~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~  530 (1253)
                      +|++|++.++. .|++||+.++..   ..+.++..+     .+.+.++.+  |++.........||||||||++||||++
T Consensus        80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~  152 (240)
T PRK09493         80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALA  152 (240)
T ss_pred             EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence            99999998886 599999987631   112221111     112333333  4444455566789999999999999999


Q ss_pred             cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          531 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       531 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      .+|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (240)
T PRK09493        153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN  226 (240)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence            9999999999999999999999999999875 47999999999999865 899999999999999998887653

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.7e-41  Score=374.18  Aligned_cols=220  Identities=26%  Similarity=0.465  Sum_probs=187.3

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++|++++|++  ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+..++++.++|
T Consensus         3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (255)
T PRK11231          3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL   80 (255)
T ss_pred             EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence            789999999974  349999999999999999999999999999999999999999999999999988777788889999


Q ss_pred             EeccCccCcc-cHHHHHhcCCCC----------CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 000851          457 VSQEPALFAT-SIANNILLGKED----------ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriai  525 (1253)
                      ++|++.++.+ |+.||+.++...          ...+++.++++..++.+..           ...+..||||||||++|
T Consensus        81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l  149 (255)
T PRK11231         81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGGQRQRAFL  149 (255)
T ss_pred             ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHHHHHHHHH
Confidence            9999998876 999999986321          0122344555555544333           34456899999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      |||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+.+++... 
T Consensus       150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-  228 (255)
T PRK11231        150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP-  228 (255)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH-
Confidence            999999999999999999999999999999999875 47899999999999865 899999999999999999888653 


Q ss_pred             chHHHHH
Q 000851          604 GEYAALV  610 (1253)
Q Consensus       604 ~~y~~~~  610 (1253)
                      ..+.+.+
T Consensus       229 ~~~~~~~  235 (255)
T PRK11231        229 GLLRTVF  235 (255)
T ss_pred             HHHHHHh
Confidence            3334443

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=7.8e-41  Score=366.85  Aligned_cols=204  Identities=30%  Similarity=0.472  Sum_probs=173.8

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH---HHhc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLRR 1082 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~---~lR~ 1082 (1253)
                      |+++||+++|+.  +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++..   .+|+
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   79 (222)
T PRK10908          2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR   79 (222)
T ss_pred             EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence            789999999952  34699999999999999999999999999999999999999999999999999877654   3688


Q ss_pred             ceEEEccCCCcc-cccHHHHhccCC--CCCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1083 KIGLVQQEPALF-STTIYENIKYGN--EDASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf-~gTIreNl~~g~--~~~~d~----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      +++|+||+|.+| ..|++||+.++.  ...+++    ++.++++..++.+...           ....+||||||||++|
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l  148 (222)
T PRK10908         80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI  148 (222)
T ss_pred             heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence            999999999874 679999998752  112222    3445555555544433           3346799999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAE 1222 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive 1222 (1253)
                      ||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus       149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            999999999999999999999999999999999874 47899999999999976 99999999999863

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=5.5e-41  Score=367.56  Aligned_cols=204  Identities=34%  Similarity=0.517  Sum_probs=172.4

Q ss_pred             EEEEEEEEECCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       377 i~~~~v~f~y~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      |+++|++++|++..  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..     +++.+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i   75 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR   75 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence            47899999997421  349999999999999999999999999999999999999999999999998863     35789


Q ss_pred             EEEeccCccCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHH
Q 000851          455 GLVSQEPALFA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR  527 (1253)
Q Consensus       455 ~~v~Q~~~lf~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiAR  527 (1253)
                      +||+|++.+|. .|++||+.++...  ..    .+++.++++..++.++.           .....+||||||||++|||
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~  144 (220)
T cd03293          76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFE-----------NAYPHQLSGGMRQRVALAR  144 (220)
T ss_pred             EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHHHHHHHHHH
Confidence            99999999987 5999999875321  11    23344445555444433           3444689999999999999


Q ss_pred             HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEe--CCEEEEeeCc
Q 000851          528 AVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLK--NGQVVESGTH  596 (1253)
Q Consensus       528 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~--~G~i~~~g~~  596 (1253)
                      ||+.+|+++||||||++||+.+.+.+.+.|+++.  .++|+|++||+++.+.. ||++++|+  +|+++++++.
T Consensus       145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            9999999999999999999999999999999874  37899999999998765 89999999  7999998864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=6.1e-41  Score=364.99  Aligned_cols=201  Identities=36%  Similarity=0.636  Sum_probs=170.5

Q ss_pred             EEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEE
Q 000851          378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV  457 (1253)
Q Consensus       378 ~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v  457 (1253)
                      +++|++++|++....+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.|+|+
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV   80 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence            36899999975223499999999999999999999999999999999999999999999999999877777888899999


Q ss_pred             eccCc--cCcccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          458 SQEPA--LFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       458 ~Q~~~--lf~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      +|++.  +++.|++||+.++...  ...    +++.+.++..++.           ........+||||||||++|||||
T Consensus        81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~laral  149 (211)
T cd03225          81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-----------GLRDRSPFTLSGGQKQRVAIAGVL  149 (211)
T ss_pred             ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHHHHHHHHHHHHH
Confidence            99983  5678999999875321  111    2233344444433           334455578999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQ  589 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~  589 (1253)
                      +.+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus       150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            99999999999999999999999999999885 47899999999999987 89999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-40  Score=370.67  Aligned_cols=204  Identities=31%  Similarity=0.464  Sum_probs=176.4

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++|++++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     .+++.++
T Consensus        12 ~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~   84 (257)
T PRK11247         12 PLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR   84 (257)
T ss_pred             cEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence            59999999999753  4999999999999999999999999999999999999999999999998763     4577899


Q ss_pred             EEeccCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000851          456 LVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK  534 (1253)
Q Consensus       456 ~v~Q~~~lf~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~  534 (1253)
                      |++|++.+|+ .|++||+.++......+++.++++..++.+.           ....+.+||||||||++|||||+++|+
T Consensus        85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p~  153 (257)
T PRK11247         85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRPG  153 (257)
T ss_pred             EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            9999999987 5999999986432223455555655555443           344557899999999999999999999


Q ss_pred             EEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcc
Q 000851          535 ILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHV  597 (1253)
Q Consensus       535 ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~  597 (1253)
                      +|||||||++||+.+...+.+.|+++.  .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus       154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            999999999999999999999999874  37899999999999865 8999999999999988754

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=7.1e-41  Score=382.64  Aligned_cols=212  Identities=22%  Similarity=0.430  Sum_probs=183.8

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      ++++|++++|+   +..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++++
T Consensus         3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig   78 (301)
T TIGR03522         3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG   78 (301)
T ss_pred             EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence            78999999996   3469999999999999999999999999999999999999999999999999876 4567889999


Q ss_pred             EEccCCCcccc-cHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |+||+|.+|++ |++||+.+...  ..+.    +++.++++..+           ++........+||||||||++||||
T Consensus        79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~la~a  147 (301)
T TIGR03522        79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVG-----------LRPEQHKKIGQLSKGYRQRVGLAQA  147 (301)
T ss_pred             EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------CchHhcCchhhCCHHHHHHHHHHHH
Confidence            99999999976 99999975321  1121    23333343333           4444445567899999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      |+++|++|||||||++||+.+.+.+++.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus       148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (301)
T TIGR03522       148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA  222 (301)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence            99999999999999999999999999999998778999999999999876 999999999999999999999763

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9e-41  Score=373.89  Aligned_cols=225  Identities=32%  Similarity=0.516  Sum_probs=185.8

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----ccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~-----~G~I~idG~di~~--i~~ 1077 (1253)
                      -++++||+++|+   +.++|+|+||+|++||++||+|+||||||||+++|.|+++|+     +|+|.+||.++..  .+.
T Consensus         4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (252)
T PRK14272          4 LLSAQDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP   80 (252)
T ss_pred             EEEEeeeEEEEC---CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence            388999999996   346999999999999999999999999999999999999874     8999999999875  345


Q ss_pred             HHHhcceEEEccCCCccc-ccHHHHhccCCC--CC-CHHHHHH----HHHHhcHHHHHHhCCCCccccccCCCCCCChhH
Q 000851         1078 RSLRRKIGLVQQEPALFS-TTIYENIKYGNE--DA-SEIELMK----ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 1149 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~-~d~ei~~----al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQ 1149 (1253)
                      ..+|++++|++|++.+|+ .|++||+.++..  .. .+++..+    .++..++.+.+   ++.++.    ...+|||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LS~G~  153 (252)
T PRK14272         81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKT----PATGLSGGQ  153 (252)
T ss_pred             HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcC----CcccCCHHH
Confidence            578899999999999998 499999986421  11 2222222    23333332221   223333    356799999


Q ss_pred             HHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 000851         1150 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1150 kQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      |||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus       154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  233 (252)
T PRK14272        154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ  233 (252)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999998778999999999999976 99999999999999999999


Q ss_pred             HhhcccchHHH
Q 000851         1229 LLRKENGIYKQ 1239 (1253)
Q Consensus      1229 Ll~~~~g~y~~ 1239 (1253)
                      ++..+...+..
T Consensus       234 ~~~~~~~~~~~  244 (252)
T PRK14272        234 LFTNPRDERTE  244 (252)
T ss_pred             HHhCcCcHHHH
Confidence            98755444443

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-41  Score=374.72  Aligned_cols=222  Identities=29%  Similarity=0.503  Sum_probs=188.4

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-----ccEEEECCccCCC--CC
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI-----SGTVLIDGYDIRT--LN 1076 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~-----~G~I~idG~di~~--i~ 1076 (1253)
                      +.|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++|+     +|+|.+||.++..  .+
T Consensus         6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~   82 (261)
T PRK14258          6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN   82 (261)
T ss_pred             ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence            35999999999963   35999999999999999999999999999999999999985     8999999999853  34


Q ss_pred             HHHHhcceEEEccCCCcccccHHHHhccCC------CCCC-HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhH
Q 000851         1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGN------EDAS-EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 1149 (1253)
Q Consensus      1077 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~------~~~~-d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQ 1149 (1253)
                      ...+|+.++|+||++.+|+.|++||+.++.      +... ++.+.++++..++.+++..       ..+..+..|||||
T Consensus        83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq  155 (261)
T PRK14258         83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ  155 (261)
T ss_pred             hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence            567889999999999999999999998642      1111 2335566666666544432       2345567899999


Q ss_pred             HHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeC-----CEEE
Q 000851         1150 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQ-----GKVA 1221 (1253)
Q Consensus      1150 kQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~-----G~iv 1221 (1253)
                      |||++|||||+++|++|||||||++||+++.+.+.+.|++..  +++|+|+|||+++.+.. ||+|++|++     |+++
T Consensus       156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~  235 (261)
T PRK14258        156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV  235 (261)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence            999999999999999999999999999999999999999853  48999999999999865 999999999     9999


Q ss_pred             EecChhHHhhcccc
Q 000851         1222 EIGSHEQLLRKENG 1235 (1253)
Q Consensus      1222 e~Gt~~eLl~~~~g 1235 (1253)
                      +.|+++++...+..
T Consensus       236 ~~~~~~~~~~~~~~  249 (261)
T PRK14258        236 EFGLTKKIFNSPHD  249 (261)
T ss_pred             EeCCHHHHHhCCCC
Confidence            99999999864443

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=9.3e-41  Score=367.97  Aligned_cols=208  Identities=29%  Similarity=0.428  Sum_probs=177.4

Q ss_pred             cEEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---H
Q 000851         1005 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---L 1080 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~---l 1080 (1253)
                      .|+++||+++|+.... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...   +
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   85 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL   85 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence            4899999999974211 35999999999999999999999999999999999999999999999999998877653   3


Q ss_pred             -hcceEEEccCCCcccc-cHHHHhccCC--CCC----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000851         1081 -RRKIGLVQQEPALFST-TIYENIKYGN--EDA----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1081 -R~~i~~V~Qdp~Lf~g-TIreNl~~g~--~~~----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQr 1152 (1253)
                       +++++|+||+|.+|+. |++||+.++.  ...    ..+++.++++..++.++..+.           ...||||||||
T Consensus        86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr  154 (228)
T PRK10584         86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR  154 (228)
T ss_pred             HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence             3689999999999875 9999997631  111    123456666666665554433           35799999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-C-CceEEEEccCchhhhccCEEEEEeCCEEEEe
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1223 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~~D~I~Vl~~G~ive~ 1223 (1253)
                      ++|||||+++|++|||||||++||+.+.+.+.+.|++.. + ++|||+|||+++.+..||++++|++|+++|.
T Consensus       155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence            999999999999999999999999999999999999874 3 7899999999999988999999999999874

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=375.16  Aligned_cols=219  Identities=30%  Similarity=0.494  Sum_probs=185.4

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCC--CCH
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQL  447 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~  447 (1253)
                      ..|+++||+++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        12 ~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~   89 (269)
T PRK14259         12 IIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP   89 (269)
T ss_pred             ceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence            359999999999743  49999999999999999999999999999999999987     699999999999863  456


Q ss_pred             HHHhcccEEEeccCccCcccHHHHHhcCCCCC--C---HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          448 KWLREQMGLVSQEPALFATSIANNILLGKEDA--S---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      ..+|+.|+||+|++.+|..|++||+.++....  .   .+++.++++..++..       +.+........+||||||||
T Consensus        90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr  162 (269)
T PRK14259         90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQR  162 (269)
T ss_pred             HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHH
Confidence            67888999999999999889999999864321  1   223344444444322       22334556677899999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeC-----------CEE
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKN-----------GQV  590 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~-----------G~i  590 (1253)
                      ++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++           |++
T Consensus       163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~  242 (269)
T PRK14259        163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL  242 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence            99999999999999999999999999999999999998778999999999998865 899999996           679


Q ss_pred             EEeeCcchhhhc
Q 000851          591 VESGTHVDLISK  602 (1253)
Q Consensus       591 ~~~g~~~~l~~~  602 (1253)
                      ++.|+.+++...
T Consensus       243 ~~~~~~~~~~~~  254 (269)
T PRK14259        243 VEFNETKKIFNS  254 (269)
T ss_pred             EEeCCHHHHHhC
Confidence            999999888654

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-40  Score=376.21  Aligned_cols=218  Identities=28%  Similarity=0.468  Sum_probs=183.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCC--CCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~  448 (1253)
                      -|+++|++|+|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+..
T Consensus        21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   98 (268)
T PRK14248         21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV   98 (268)
T ss_pred             eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence            5899999999974  349999999999999999999999999999999999864     799999999999864  3445


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .++++++|++|++.+|+.|++||+.++....   .    .+.+.++++..++.+       +.....+..+.+|||||||
T Consensus        99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~q  171 (268)
T PRK14248         99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQQQ  171 (268)
T ss_pred             HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHHHH
Confidence            6788999999999999999999998753211   1    122334444443321       1112345667799999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  251 (268)
T PRK14248        172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF  251 (268)
T ss_pred             HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998778899999999998865 8999999999999999998886


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       252 ~~  253 (268)
T PRK14248        252 TS  253 (268)
T ss_pred             hC
Confidence            54

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-40  Score=374.38  Aligned_cols=220  Identities=30%  Similarity=0.467  Sum_probs=187.4

Q ss_pred             CCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCC--CC
Q 000851          374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQ  446 (1253)
Q Consensus       374 ~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~  446 (1253)
                      ...|+++|++|+|++  .++|+|+||++++||+++|+||||||||||+++|+|+++     |++|+|.+||.++..  .+
T Consensus        18 ~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   95 (267)
T PRK14237         18 EIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN   95 (267)
T ss_pred             CeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence            346999999999964  349999999999999999999999999999999999997     589999999999864  34


Q ss_pred             HHHHhcccEEEeccCccCcccHHHHHhcCCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHH
Q 000851          447 LKWLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ  519 (1253)
Q Consensus       447 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq  519 (1253)
                      ...+|+.|+||+|++.+|..|++||+.++....   .    .+++.++++..++.+++       ++..+..+.+|||||
T Consensus        96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~  168 (267)
T PRK14237         96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQ  168 (267)
T ss_pred             hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHH
Confidence            556788999999999999899999998863211   1    12344445555443332       234566778999999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcch
Q 000851          520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD  598 (1253)
Q Consensus       520 ~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~  598 (1253)
                      |||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus       169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  248 (267)
T PRK14237        169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN  248 (267)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999998778999999999998855 89999999999999999998


Q ss_pred             hhhc
Q 000851          599 LISK  602 (1253)
Q Consensus       599 l~~~  602 (1253)
                      +...
T Consensus       249 ~~~~  252 (267)
T PRK14237        249 IFTN  252 (267)
T ss_pred             HhcC
Confidence            8654

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=7.5e-41  Score=376.44  Aligned_cols=222  Identities=30%  Similarity=0.448  Sum_probs=183.3

Q ss_pred             EEEEEEEEECCCC-------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH-
Q 000851          377 IEFSEVCFAYPSR-------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK-  448 (1253)
Q Consensus       377 i~~~~v~f~y~~~-------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~-  448 (1253)
                      |+++||+|+|++.       ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. 
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~   82 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ   82 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence            7899999999631       23599999999999999999999999999999999999999999999999999876654 


Q ss_pred             --HHhcccEEEeccCc--cCc-ccHHHHHhcCCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCcc-ccccCCCCCC
Q 000851          449 --WLREQMGLVSQEPA--LFA-TSIANNILLGKE---DAS----MDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQL  515 (1253)
Q Consensus       449 --~~r~~i~~v~Q~~~--lf~-~ti~~ni~~g~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~L  515 (1253)
                        .+|+.|+||+|++.  ++. .|++||+.++..   ...    .+++.++         ++.+  |++ ......+.+|
T Consensus        83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~---------l~~~--gl~~~~~~~~~~~L  151 (265)
T TIGR02769        83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAEL---------LDMV--GLRSEDADKLPRQL  151 (265)
T ss_pred             HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH---------HHHc--CCChhhhhCChhhC
Confidence              36778999999983  443 599999975421   111    1223333         3333  443 2345667789


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000851          516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE  592 (1253)
Q Consensus       516 SgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~  592 (1253)
                      |||||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++
T Consensus       152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  231 (265)
T TIGR02769       152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE  231 (265)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence            99999999999999999999999999999999999999999998853  7899999999999975 89999999999999


Q ss_pred             eeCcchhhhcCc-hHHHH
Q 000851          593 SGTHVDLISKGG-EYAAL  609 (1253)
Q Consensus       593 ~g~~~~l~~~~~-~y~~~  609 (1253)
                      .|+++++..... .++.+
T Consensus       232 ~g~~~~~~~~~~~~~~~~  249 (265)
T TIGR02769       232 ECDVAQLLSFKHPAGRNL  249 (265)
T ss_pred             ECCHHHHcCCCCHHHHHH
Confidence            999999987433 34334

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-40  Score=367.05  Aligned_cols=209  Identities=34%  Similarity=0.544  Sum_probs=183.5

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++||+++|+.   .  ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.  .++.++
T Consensus         2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   74 (232)
T PRK10771          2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS   74 (232)
T ss_pred             eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence            789999999962   2  249999999999999999999999999999999999999999999999876654  357899


Q ss_pred             EEccCCCcccc-cHHHHhccCC-CC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGN-ED-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~-~~-----~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |+||++.+|.+ |++||+.++. +.     ..++++.++++..++.+++.+.|           ..||||||||++||||
T Consensus        75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara  143 (232)
T PRK10771         75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC  143 (232)
T ss_pred             EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence            99999999985 9999998642 11     12445777888888877666554           4799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ++++|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~  220 (232)
T PRK10771        144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG  220 (232)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999999998753  7899999999999865 999999999999999999999863

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=9.8e-41  Score=363.26  Aligned_cols=201  Identities=33%  Similarity=0.540  Sum_probs=174.9

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+.   ..  .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.  .|++++
T Consensus         1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   73 (211)
T cd03298           1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS   73 (211)
T ss_pred             CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence            578999999963   22  39999999999999999999999999999999999999999999999987654  467899


Q ss_pred             EEccCCCcccc-cHHHHhccCCC-C-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGNE-D-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~~-~-----~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |++|++.+|++ |++||+.++.. .     .+++++.++++..++.++..+.|           .+||||||||++||||
T Consensus        74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a  142 (211)
T cd03298          74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV  142 (211)
T ss_pred             EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence            99999999975 99999986532 1     12345677787777766655443           4799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      |+++|++|||||||++||+++.+.+.+.|++..  .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus       143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            999999999999999999999999999999875  37899999999999966 9999999999998765

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=4.5e-41  Score=370.98  Aligned_cols=211  Identities=28%  Similarity=0.461  Sum_probs=179.4

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH-HhcccE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG  455 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~  455 (1253)
                      |+++||+++|++.  ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus         1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (230)
T TIGR03410         1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA   78 (230)
T ss_pred             CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence            4789999999743  4999999999999999999999999999999999999999999999999998776554 467899


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCCCC--HHH-HHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000851          456 LVSQEPALFAT-SIANNILLGKEDAS--MDR-VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~~~--~~~-~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~  531 (1253)
                      |++|++.+|+. |++||+.++.....  .++ ..++.+..+          +++........+||||||||++||||+++
T Consensus        79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~  148 (230)
T TIGR03410        79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT  148 (230)
T ss_pred             EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence            99999999986 99999987643221  111 122222211          22333455667899999999999999999


Q ss_pred             CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchh
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       532 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      +|+++||||||++||+.+.+.+.+.|.++.+  ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus       149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            9999999999999999999999999998764  7899999999999986 899999999999999999887

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=376.03  Aligned_cols=219  Identities=31%  Similarity=0.498  Sum_probs=186.9

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCC--CCH
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL  447 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~  447 (1253)
                      +.|+++|++|+|+++  .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .+.
T Consensus        24 ~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~  101 (272)
T PRK14236         24 TALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV  101 (272)
T ss_pred             cEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence            469999999999743  499999999999999999999999999999999999984     89999999999864  345


Q ss_pred             HHHhcccEEEeccCccCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHH
Q 000851          448 KWLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK  520 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~  520 (1253)
                      .++|+.++|++|++.+|+.|++||+.++...  . .    .+++.++++..++.+++       .+..+..+.+||||||
T Consensus       102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~  174 (272)
T PRK14236        102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGGQQ  174 (272)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHHHH
Confidence            6778899999999999988999999875321  1 1    12344455555443322       2345667789999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchh
Q 000851          521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       521 qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      ||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  254 (272)
T PRK14236        175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL  254 (272)
T ss_pred             HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999865 899999999999999999888


Q ss_pred             hhc
Q 000851          600 ISK  602 (1253)
Q Consensus       600 ~~~  602 (1253)
                      ...
T Consensus       255 ~~~  257 (272)
T PRK14236        255 FTS  257 (272)
T ss_pred             hcC
Confidence            654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-41  Score=390.53  Aligned_cols=200  Identities=33%  Similarity=0.557  Sum_probs=172.9

Q ss_pred             ccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHH----hcccEEEeccCccCcc-c
Q 000851          393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----REQMGLVSQEPALFAT-S  467 (1253)
Q Consensus       393 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~-t  467 (1253)
                      +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+    +++|+||+|++.+|.. |
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T  122 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT  122 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence            7999999999999999999999999999999999999999999999999988776543    4579999999999965 9


Q ss_pred             HHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCc
Q 000851          468 IANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA  541 (1253)
Q Consensus       468 i~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~  541 (1253)
                      ++||+.++...  ..    .+++.++++..++.++..+           ...+||||||||++|||||+.+|++||||||
T Consensus       123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDEP  191 (400)
T PRK10070        123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDEA  191 (400)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            99999986321  11    2344555555555444444           4458999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          542 TSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       542 ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      ||+||+.+.+.+++.|.++.  .++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus       192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~  256 (400)
T PRK10070        192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP  256 (400)
T ss_pred             CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence            99999999999999999874  47899999999999865 8999999999999999999987653

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-40  Score=369.90  Aligned_cols=216  Identities=27%  Similarity=0.503  Sum_probs=179.8

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCC------CCCHHHH
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK------SLQLKWL  450 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~------~~~~~~~  450 (1253)
                      ++++|++++|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.      ..+...+
T Consensus         3 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (242)
T PRK11124          3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL   80 (242)
T ss_pred             EEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence            7899999999753  4999999999999999999999999999999999999999999999999873      1234567


Q ss_pred             hcccEEEeccCccCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          451 REQMGLVSQEPALFAT-SIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       451 r~~i~~v~Q~~~lf~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      |++|+|++|++.+|.. |++||+.++..   ....++..+     .+.++++.+  |++........+||||||||++||
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la  153 (242)
T PRK11124         81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA  153 (242)
T ss_pred             HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence            8899999999999975 99999975311   111111111     122333333  444445555678999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ||++.+|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  230 (242)
T PRK11124        154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ  230 (242)
T ss_pred             HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence            99999999999999999999999999999999875 47999999999999865 89999999999999999887653

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=1e-40  Score=371.04  Aligned_cols=221  Identities=24%  Similarity=0.449  Sum_probs=184.7

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH-HhcccE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG  455 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~  455 (1253)
                      |+++|++++|++.  ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus         3 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (242)
T TIGR03411         3 LYLEGLSVSFDGF--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG   80 (242)
T ss_pred             EEEEeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence            7899999999743  4999999999999999999999999999999999999999999999999988776554 355799


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCCCC-H-HH---HHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          456 LVSQEPALFAT-SIANNILLGKEDAS-M-DR---VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~~~-~-~~---~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      |++|++.+|++ |++||+.++..... . ..   .........+.+.++.+  |++........+||||||||++||||+
T Consensus        81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral  158 (242)
T TIGR03411        81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL  158 (242)
T ss_pred             EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence            99999999986 99999988642100 0 00   00000111223444444  555555667789999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      +.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  231 (242)
T TIGR03411       159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA  231 (242)
T ss_pred             hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence            9999999999999999999999999999998778999999999999975 89999999999999999988764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-41  Score=357.52  Aligned_cols=221  Identities=33%  Similarity=0.583  Sum_probs=194.1

Q ss_pred             cEEEEEEEEECCCCCC----------------------cccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCc
Q 000851          376 QIEFSEVCFAYPSRPH----------------------MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG  433 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~----------------------~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G  433 (1253)
                      .|+++||++-|+.++.                      .-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            5889999988864321                      147899999999999999999999999999999999999999


Q ss_pred             EEEECCeeCCCCCHHHHh----cccEEEeccCccCc-ccHHHHHhcCCCCC------CHHHHHHHHHHhCcHHHHhcCCC
Q 000851          434 KILLDGHDLKSLQLKWLR----EQMGLVSQEPALFA-TSIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPD  502 (1253)
Q Consensus       434 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~lf~-~ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~  502 (1253)
                      +|++||.|+..++.++||    +++++|+|+..||+ .||.||..||.+-.      ..+...++++.+++++|-.+.|+
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~  163 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN  163 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence            999999999999987764    47999999999986 49999999997532      23456677888888888877775


Q ss_pred             CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-c
Q 000851          503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-V  579 (1253)
Q Consensus       503 g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~  579 (1253)
                                 +||||+|||+.|||||..||+||++|||+|||||--+..+|+.|.++.+  .||+++|||++++.-+ .
T Consensus       164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG  232 (386)
T COG4175         164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG  232 (386)
T ss_pred             -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence                       8999999999999999999999999999999999999999999988753  6999999999998655 6


Q ss_pred             CEEEEEeCCEEEEeeCcchhhhcCc-hHH
Q 000851          580 DTIMVLKNGQVVESGTHVDLISKGG-EYA  607 (1253)
Q Consensus       580 d~i~vl~~G~i~~~g~~~~l~~~~~-~y~  607 (1253)
                      |||..|++|+|++.||++|++.++. .|-
T Consensus       233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV  261 (386)
T COG4175         233 DRIAIMKDGEIVQVGTPEEILLNPANDYV  261 (386)
T ss_pred             ceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence            9999999999999999999988743 343

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-40  Score=376.05  Aligned_cols=213  Identities=30%  Similarity=0.468  Sum_probs=179.9

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCC--CCCHHHHhccc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK--SLQLKWLREQM  454 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~i  454 (1253)
                      |+++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.  +.+...+|++|
T Consensus         2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i   79 (271)
T PRK13638          2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV   79 (271)
T ss_pred             eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence            689999999974  34999999999999999999999999999999999999999999999999985  33445678899


Q ss_pred             EEEeccCc--cCcccHHHHHhcCCC--CCCHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          455 GLVSQEPA--LFATSIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       455 ~~v~Q~~~--lf~~ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      +||+|++.  ++..|+.+|+.++..  ..+.+    ++.++++..++.++.           .....+||||||||++||
T Consensus        80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la  148 (271)
T PRK13638         80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAIA  148 (271)
T ss_pred             EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHHH
Confidence            99999985  567799999987521  11222    233444444443332           334568999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (271)
T PRK13638        149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC  226 (271)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999999875 47899999999999865 899999999999999999887654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=373.04  Aligned_cols=218  Identities=29%  Similarity=0.475  Sum_probs=183.3

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccC--CC---CCcEEEECCeeCCCC--CHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY--EP---TSGKILLDGHDLKSL--QLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~---~~G~i~~~g~~~~~~--~~~  448 (1253)
                      -++++||+++|+++  .+|+|+||+|++||+++|+||||||||||+++|+|++  .|   ++|+|.++|+++...  +..
T Consensus         5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~   82 (252)
T PRK14239          5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV   82 (252)
T ss_pred             eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence            48999999999743  4999999999999999999999999999999999995  46   599999999998643  345


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+|+.++||+|++.+|+.|++||+.++...  . .    .+++.++++..++.+.+       .+..+..+.+|||||||
T Consensus        83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q  155 (252)
T PRK14239         83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQQ  155 (252)
T ss_pred             hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHHH
Confidence            678899999999999999999999875311  1 1    12333344444433222       23445667789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  235 (252)
T PRK14239        156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF  235 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998778999999999998765 8999999999999999999986


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      +.
T Consensus       236 ~~  237 (252)
T PRK14239        236 MN  237 (252)
T ss_pred             hC
Confidence            54

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=6.7e-41  Score=364.25  Aligned_cols=201  Identities=25%  Similarity=0.518  Sum_probs=170.9

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      ++++|++++|+   +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..    .+|++++
T Consensus         1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG   73 (210)
T ss_pred             CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence            47899999996   3469999999999999999999999999999999999999999999999998753    5678999


Q ss_pred             EEccCCCcccc-cHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |+||++.+|++ |++||+.++..  ..+    ++++.++++..++           +........+||||||||++||||
T Consensus        74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la~a  142 (210)
T cd03269          74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL-----------SEYANKRVEELSKGNQQKVQFIAA  142 (210)
T ss_pred             EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCC-----------hHHHhCcHhhCCHHHHHHHHHHHH
Confidence            99999999875 99999976421  111    1233344444443           333344556899999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      |+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            999999999999999999999999999999864 47899999999999865 9999999999998865

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=1.6e-40  Score=373.86  Aligned_cols=229  Identities=28%  Similarity=0.460  Sum_probs=189.3

Q ss_pred             cEEEEeEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH
Q 000851         1005 NIELRNVSFKYPVR------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 1078 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~ 1078 (1253)
                      .|+++||+++|+..      .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~   83 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS   83 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence            48999999999631      124699999999999999999999999999999999999999999999999998765666


Q ss_pred             HHhcceEEEccCCC--ccc-ccHHHHhccCC---CCC----CHHHHHHHHHHhcHH-HHHHhCCCCccccccCCCCCCCh
Q 000851         1079 SLRRKIGLVQQEPA--LFS-TTIYENIKYGN---EDA----SEIELMKATKAANAH-GFISRMPEGYQSHVGDRGVQLSG 1147 (1253)
Q Consensus      1079 ~lR~~i~~V~Qdp~--Lf~-gTIreNl~~g~---~~~----~d~ei~~al~~a~l~-~~I~~lp~gldt~vge~G~~LSg 1147 (1253)
                      ..+++++|+||+|.  +++ -|+.+|+.+..   ...    .++++.++++..++. +...           ....+|||
T Consensus        84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~  152 (267)
T PRK15112         84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-----------YYPHMLAP  152 (267)
T ss_pred             hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-----------cCchhcCH
Confidence            66788999999985  444 38899986421   111    123456667776662 2222           22357999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~G 1224 (1253)
                      |||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+  ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus       153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~  232 (267)
T PRK15112        153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG  232 (267)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999999999999999999998753  7899999999999986 9999999999999999


Q ss_pred             ChhHHhhcc-cchHHHHHHHh
Q 000851         1225 SHEQLLRKE-NGIYKQLIRLQ 1244 (1253)
Q Consensus      1225 t~~eLl~~~-~g~y~~L~~~~ 1244 (1253)
                      +++++.+.+ ...+++++...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~  253 (267)
T PRK15112        233 STADVLASPLHELTKRLIAGH  253 (267)
T ss_pred             CHHHHhcCCCCHHHHHHHHhc
Confidence            999998743 34566777644

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-40  Score=367.59  Aligned_cols=218  Identities=25%  Similarity=0.418  Sum_probs=181.0

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH-HHhccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK-WLREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~-~~r~~i  454 (1253)
                      -|+++|++++|+++  .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.+
T Consensus         5 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   82 (237)
T PRK11614          5 MLSFDKVSAHYGKI--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV   82 (237)
T ss_pred             EEEEEeEEEeeCCc--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence            38999999999743  499999999999999999999999999999999999999999999999999877754 467789


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          455 GLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      +|++|++.+|.. |++||+.++......++..+.+     .+.+..++. ++........+||||||||++||||++.+|
T Consensus        83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~p  156 (237)
T PRK11614         83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMSQP  156 (237)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence            999999999985 9999998864322222222211     111222211 111223456789999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          534 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      +||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence            9999999999999999999999999875 48999999999997754 89999999999999999998864

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=1.3e-40  Score=365.45  Aligned_cols=209  Identities=29%  Similarity=0.498  Sum_probs=180.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      -|+++||++.|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   84 (225)
T PRK10247          7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS   84 (225)
T ss_pred             eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence            48999999999743  4999999999999999999999999999999999999999999999999998888877888999


Q ss_pred             EEeccCccCcccHHHHHhcCCC---CC-CHHHHHHHHHHhCcHHHHhcCCCCcc-ccccCCCCCCChHHHHHHHHHHHhc
Q 000851          456 LVSQEPALFATSIANNILLGKE---DA-SMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIAIARAVL  530 (1253)
Q Consensus       456 ~v~Q~~~lf~~ti~~ni~~g~~---~~-~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGq~qriaiARal~  530 (1253)
                      |++|++.+|+.|++||+.++..   .. ..+++.+         .++.+  |+. +.....+.+||||||||++|||||+
T Consensus        85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~  153 (225)
T PRK10247         85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD---------DLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQ  153 (225)
T ss_pred             EEecccccccccHHHHHHhHHhhcCCChHHHHHHH---------HHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            9999999998899999986421   11 1122223         33333  342 3456667899999999999999999


Q ss_pred             cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhhcCEEEEEe-CCEEEEeeCcc
Q 000851          531 RNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLK-NGQVVESGTHV  597 (1253)
Q Consensus       531 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~-~G~i~~~g~~~  597 (1253)
                      ++|+++||||||++||+.+.+.+.+.|+++.  .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~  223 (225)
T PRK10247        154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE  223 (225)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence            9999999999999999999999999999875  3789999999999998899999995 67778889885

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=2.1e-40  Score=370.53  Aligned_cols=217  Identities=30%  Similarity=0.534  Sum_probs=181.9

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCC--------HH
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ--------LK  448 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--------~~  448 (1253)
                      ++++||+++|+++  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+        ..
T Consensus         4 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (250)
T PRK11264          4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR   81 (250)
T ss_pred             EEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence            8899999999743  4999999999999999999999999999999999999999999999999986432        34


Q ss_pred             HHhcccEEEeccCccCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          449 WLREQMGLVSQEPALFA-TSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      .+|+.++||+|++.+|+ .|++||+.++..   ....++..+.     +.+.++.+  |++......+.+||||||||++
T Consensus        82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~  154 (250)
T PRK11264         82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRVA  154 (250)
T ss_pred             HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence            56788999999999886 599999987421   1122211111     12333333  4444455667899999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  234 (250)
T PRK11264        155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD  234 (250)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999999875 47899999999999865 899999999999999999887654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-40  Score=372.99  Aligned_cols=218  Identities=31%  Similarity=0.495  Sum_probs=183.4

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCC--CCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~  448 (1253)
                      .|+++|++|+|++.  ++|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++..  .+..
T Consensus         4 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~   81 (251)
T PRK14251          4 IISAKDVHLSYGNY--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV   81 (251)
T ss_pred             eEEEEeeEEEECCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence            48999999999743  49999999999999999999999999999999999997     489999999999854  3445


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+|+.++|++|++.+|+.|++||+.++....   .    .+++.++++..++++.       ........+.+|||||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~q  154 (251)
T PRK14251         82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE-------TKDNLDRNAQAFSGGQQQ  154 (251)
T ss_pred             HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc-------hHHHhccChhhCCHHHHH
Confidence            6788899999999999999999998763211   1    1233344444443211       112234566799999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14251        155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF  234 (251)
T ss_pred             HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998778999999999999865 8999999999999999999886


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       235 ~~  236 (251)
T PRK14251        235 IA  236 (251)
T ss_pred             hC
Confidence            54

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-41  Score=372.90  Aligned_cols=218  Identities=30%  Similarity=0.496  Sum_probs=183.2

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcc---CCC--CCcEEEECCeeCCCC--CHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL---YEP--TSGKILLDGHDLKSL--QLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~---~~~--~~G~i~~~g~~~~~~--~~~  448 (1253)
                      .|+++|+++.|++  ..+|+|+||++++||+++|+||||||||||+++|+|+   ++|  ++|+|.++|+++...  +..
T Consensus         3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   80 (250)
T PRK14245          3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD   80 (250)
T ss_pred             EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence            4889999999974  3499999999999999999999999999999999997   454  599999999998653  345


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+|+.|+|++|++.+|+.|++||+.++....   .    .+++.++++..++.++       ..+.....+.+|||||||
T Consensus        81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q  153 (250)
T PRK14245         81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE-------VKDKLKESAFALSGGQQQ  153 (250)
T ss_pred             HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc-------hhhhhhCCcccCCHHHHH
Confidence            6788999999999999889999998753211   1    1223344444433222       223455677899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~  233 (250)
T PRK14245        154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF  233 (250)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence            999999999999999999999999999999999999998778999999999999855 8999999999999999999986


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       234 ~~  235 (250)
T PRK14245        234 TN  235 (250)
T ss_pred             cC
Confidence            54

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-40  Score=372.28  Aligned_cols=221  Identities=32%  Similarity=0.521  Sum_probs=185.4

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--C---CccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD--P---ISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~--p---~~G~I~idG~di~~--i~~ 1077 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++  |   ++|+|.+||.++..  .+.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14255          5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV   81 (252)
T ss_pred             eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence            4899999999973   469999999999999999999999999999999999975  4   58999999999864  344


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCC--CC-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNE--DA-S----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~--~~-~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      ..+|++++|+||++.+|+.|+++|+.++..  .. .    ++++.++++.+++.+.+       .........+||||||
T Consensus        82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~  154 (252)
T PRK14255         82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ  154 (252)
T ss_pred             HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence            567889999999999999999999986421  11 1    22344455555443222       2233445578999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+.
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14255        155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM  234 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998767899999999999865 999999999999999999998


Q ss_pred             hhcccc
Q 000851         1230 LRKENG 1235 (1253)
Q Consensus      1230 l~~~~g 1235 (1253)
                      ...+..
T Consensus       235 ~~~~~~  240 (252)
T PRK14255        235 FLNPKE  240 (252)
T ss_pred             hcCCCC
Confidence            864443

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=9.1e-41  Score=385.07  Aligned_cols=213  Identities=30%  Similarity=0.506  Sum_probs=181.8

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+   +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|++|
T Consensus        41 ~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i  116 (340)
T PRK13536         41 AIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI  116 (340)
T ss_pred             eEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence            499999999996   346999999999999999999999999999999999999999999999999987654 5678999


Q ss_pred             EEEccCCCcc-cccHHHHhccCCC--CCCHHHHH----HHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALF-STTIYENIKYGNE--DASEIELM----KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf-~gTIreNl~~g~~--~~~d~ei~----~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      +|+||++.+| ..|++||+.+...  ..+..+..    ++++..       .+++..++.+    .+||||||||++|||
T Consensus       117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-------~L~~~~~~~~----~~LS~G~kqrv~lA~  185 (340)
T PRK13536        117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFA-------RLESKADARV----SDLSGGMKRRLTLAR  185 (340)
T ss_pred             EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchhhCCCh----hhCCHHHHHHHHHHH
Confidence            9999999987 4699999975321  12222222    222222       2344445554    469999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ||+.+|++|||||||++||+.+.+.+++.|+++. +|+|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus       186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            9999999999999999999999999999999875 48999999999999966 999999999999999999999763

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-40  Score=372.35  Aligned_cols=220  Identities=33%  Similarity=0.503  Sum_probs=187.9

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-----CccEEEECCccCCC--CCH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP-----ISGTVLIDGYDIRT--LNL 1077 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p-----~~G~I~idG~di~~--i~~ 1077 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++|     ++|+|.+||.++..  .+.
T Consensus        20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~   96 (274)
T PRK14265         20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS   96 (274)
T ss_pred             eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence            6999999999973   4699999999999999999999999999999999999864     58999999999864  344


Q ss_pred             HHHhcceEEEccCCCcccccHHHHhccCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHH
Q 000851         1078 RSLRRKIGLVQQEPALFSTTIYENIKYGNED-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~-----~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQr 1152 (1253)
                      ..+|++|+|+||++.+|+.|+.+|+.++...     ..++++.++++.+++.+++..       ........||||||||
T Consensus        97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr  169 (274)
T PRK14265         97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR  169 (274)
T ss_pred             HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence            5678999999999999999999999875311     123345566666666544432       2334556899999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEEEEEe---------CCEEEE
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQ---------QGKVAE 1222 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~---------~G~ive 1222 (1253)
                      ++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|+         +|++++
T Consensus       170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~  249 (274)
T PRK14265        170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE  249 (274)
T ss_pred             HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence            99999999999999999999999999999999999998778999999999999865 99999997         899999


Q ss_pred             ecChhHHhhccc
Q 000851         1223 IGSHEQLLRKEN 1234 (1253)
Q Consensus      1223 ~Gt~~eLl~~~~ 1234 (1253)
                      .|+++++...+.
T Consensus       250 ~g~~~~~~~~~~  261 (274)
T PRK14265        250 FSPTEQMFGSPQ  261 (274)
T ss_pred             eCCHHHHHhCCC
Confidence            999999986443

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-40  Score=377.98  Aligned_cols=223  Identities=27%  Similarity=0.490  Sum_probs=181.8

Q ss_pred             CCcEEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCC----C-
Q 000851          374 AGQIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS----L-  445 (1253)
Q Consensus       374 ~~~i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~-  445 (1253)
                      .+.|+++|++++|+++.   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..    . 
T Consensus         4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~   83 (289)
T PRK13645          4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK   83 (289)
T ss_pred             cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence            36799999999997532   249999999999999999999999999999999999999999999999999852    2 


Q ss_pred             CHHHHhcccEEEeccC--ccCcccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          446 QLKWLREQMGLVSQEP--ALFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       446 ~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      +...+|+.|+||+|++  .+|..|++||+.++...  ...++..+.+.  .+.+.+ .+|++   .....+.+|||||||
T Consensus        84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~ll~~~-~L~~~---~~~~~~~~LS~Gq~q  157 (289)
T PRK13645         84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP--ELLKLV-QLPED---YVKRSPFELSGGQKR  157 (289)
T ss_pred             cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CCChh---HhcCChhhCCHHHHH
Confidence            3456788999999998  46778999999886421  22222221111  111111 23222   334566789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcch
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD  598 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~  598 (1253)
                      |++|||||+.+|++|||||||++||+.+.+.+.+.|+++.  .++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus       158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  237 (289)
T PRK13645        158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE  237 (289)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999999999999999999999875  37899999999998765 89999999999999999888


Q ss_pred             hhhc
Q 000851          599 LISK  602 (1253)
Q Consensus       599 l~~~  602 (1253)
                      +...
T Consensus       238 ~~~~  241 (289)
T PRK13645        238 IFSN  241 (289)
T ss_pred             HhcC
Confidence            7653

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-40  Score=370.70  Aligned_cols=216  Identities=26%  Similarity=0.494  Sum_probs=183.8

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH-HhcccE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQMG  455 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~  455 (1253)
                      ++++|++++|+++  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.++
T Consensus         4 l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   81 (241)
T PRK10895          4 LTAKNLAKAYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG   81 (241)
T ss_pred             EEEeCcEEEeCCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence            7899999999743  4999999999999999999999999999999999999999999999999998776543 577899


Q ss_pred             EEeccCccCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000851          456 LVSQEPALFAT-SIANNILLGKED---ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~  531 (1253)
                      |++|++.+|.. |++||+.++...   .+.++.     ...+.+.++.+  |++........+||||||||++||||++.
T Consensus        82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~  154 (241)
T PRK10895         82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA  154 (241)
T ss_pred             EeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence            99999998875 999999875321   111111     11223445554  55555666778999999999999999999


Q ss_pred             CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       532 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      +|++|||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus       155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            999999999999999999999999998875 48999999999987755 89999999999999999988764

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-40  Score=376.66  Aligned_cols=220  Identities=30%  Similarity=0.537  Sum_probs=181.9

Q ss_pred             cEEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCC----CHH
Q 000851          376 QIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~  448 (1253)
                      .|+++|++++|++..   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...    +..
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            378999999997421   3499999999999999999999999999999999999999999999999998643    245


Q ss_pred             HHhcccEEEeccC--ccCcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHhcCCCCcc-ccccCCCCCCChHHHHHH
Q 000851          449 WLREQMGLVSQEP--ALFATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRI  523 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~--~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGq~qri  523 (1253)
                      ..++.|+|++|+|  .+|..|++||+.++..  ..+.++..+.     +.+.++.+  |++ ........+||||||||+
T Consensus        82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl  154 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV  154 (287)
T ss_pred             HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence            6778899999998  5777899999987532  1222222111     12233333  443 234556678999999999


Q ss_pred             HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       524 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      +|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13641        155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS  234 (287)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999999885 47899999999999865 89999999999999999988765


Q ss_pred             c
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      .
T Consensus       235 ~  235 (287)
T PRK13641        235 D  235 (287)
T ss_pred             C
Confidence            3

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.1e-40  Score=367.77  Aligned_cols=211  Identities=35%  Similarity=0.540  Sum_probs=174.0

Q ss_pred             EEEEEEEEECCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH---HHHh
Q 000851          377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLR  451 (1253)
Q Consensus       377 i~~~~v~f~y~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r  451 (1253)
                      |+++||+++|++..  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.   ..+|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR   81 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence            68999999997531  249999999999999999999999999999999999999999999999999987763   5678


Q ss_pred             cccEEEeccC--ccC-cccHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHhcCCCCcc-ccccCCCCCCChHHHHHH
Q 000851          452 EQMGLVSQEP--ALF-ATSIANNILLGKE----DASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRI  523 (1253)
Q Consensus       452 ~~i~~v~Q~~--~lf-~~ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGq~qri  523 (1253)
                      ++++|++|++  .++ ..|++||+.++..    ....+....++     .+.++.+  |+. ........+||||||||+
T Consensus        82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv  154 (228)
T cd03257          82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV  154 (228)
T ss_pred             ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence            8999999999  344 4699999986421    11111111111     1233333  332 345666788999999999


Q ss_pred             HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEee
Q 000851          524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESG  594 (1253)
Q Consensus       524 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g  594 (1253)
                      +||||++.+|++|||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus       155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            999999999999999999999999999999999998854  799999999999987 58999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-40  Score=376.53  Aligned_cols=219  Identities=31%  Similarity=0.516  Sum_probs=181.9

Q ss_pred             EEEEEEEEECCCCC---CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCC----CHHH
Q 000851          377 IEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLKW  449 (1253)
Q Consensus       377 i~~~~v~f~y~~~~---~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~  449 (1253)
                      |+++||+|+|++..   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...    +...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            78999999997432   2499999999999999999999999999999999999999999999999998753    3466


Q ss_pred             HhcccEEEeccC--ccCcccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHhcCCCCcc-ccccCCCCCCChHHHHHHH
Q 000851          450 LREQMGLVSQEP--ALFATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       450 ~r~~i~~v~Q~~--~lf~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGq~qria  524 (1253)
                      +|+.|+|++|++  .+|+.|++||+.++...  .+.++..+.+     .+.++.+  |++ ........+||||||||++
T Consensus        83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~  155 (280)
T PRK13649         83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRVA  155 (280)
T ss_pred             HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence            788999999998  67888999999875321  2233222211     1222222  333 2345566789999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |||||+.+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  235 (280)
T PRK13649        156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD  235 (280)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999999875 47899999999999865 899999999999999999887653

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=100.00  E-value=9.2e-40  Score=413.00  Aligned_cols=104  Identities=31%  Similarity=0.534  Sum_probs=94.2

Q ss_pred             Cccc-cccCCCCCCChhHHHHHHHHHHhccCC---CEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhh
Q 000851         1133 GYQS-HVGDRGVQLSGGQKQRVAIARAILKNP---SILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIR 1207 (1253)
Q Consensus      1133 gldt-~vge~G~~LSgGQkQrlaLARALlr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~ 1207 (1253)
                      |++. .++.....||||||||++|||+|+++|   +++||||||++||+.+.+.+.+.|+++. +|+|||+|+|+++.+.
T Consensus       818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~  897 (943)
T PRK00349        818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK  897 (943)
T ss_pred             CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            5554 467778899999999999999999999   9999999999999999999999999875 5899999999999999


Q ss_pred             ccCEEEEE------eCCEEEEecChhHHhhcccch
Q 000851         1208 NADKIAVL------QQGKVAEIGSHEQLLRKENGI 1236 (1253)
Q Consensus      1208 ~~D~I~Vl------~~G~ive~Gt~~eLl~~~~g~ 1236 (1253)
                      .||+|++|      ++|+|++.|+++++.+.+++.
T Consensus       898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~  932 (943)
T PRK00349        898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY  932 (943)
T ss_pred             hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence            99999999      799999999999999755443

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-40  Score=370.25  Aligned_cols=212  Identities=28%  Similarity=0.480  Sum_probs=182.7

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++++|+++  .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (258)
T PRK13548          3 LEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV   80 (258)
T ss_pred             EEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence            7899999999753  49999999999999999999999999999999999999999999999999988777777889999


Q ss_pred             EeccCcc-CcccHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPAL-FATSIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~l-f~~ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      ++|++.+ +..|++||+.++....  .    .+++.++++..++.+           .......+||||||||++|||||
T Consensus        81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qrv~la~al  149 (258)
T PRK13548         81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQRVQLARVL  149 (258)
T ss_pred             EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHHH
Confidence            9999987 5679999998864211  1    123444444444433           33444568999999999999999


Q ss_pred             c------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          530 L------RNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       530 ~------~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      +      .+|++|||||||++||+.+.+.+.+.|+++.  +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (258)
T PRK13548        150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL  229 (258)
T ss_pred             hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence            9      5999999999999999999999999999875  47899999999999874 8999999999999999998876


Q ss_pred             h
Q 000851          601 S  601 (1253)
Q Consensus       601 ~  601 (1253)
                      .
T Consensus       230 ~  230 (258)
T PRK13548        230 T  230 (258)
T ss_pred             C
Confidence            5

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=373.61  Aligned_cols=218  Identities=29%  Similarity=0.455  Sum_probs=183.4

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCCC--CHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~~  448 (1253)
                      .|+++|++++|++  ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++...  +..
T Consensus        12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   89 (258)
T PRK14268         12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV   89 (258)
T ss_pred             eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence            5999999999974  3499999999999999999999999999999999999985     899999999998643  234


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCC--CCHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKED--ASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      .+|+.++|++|++.+|+.|++||+.++...  .+.+    ++.++++..++.++       ..........+||||||||
T Consensus        90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~qr  162 (258)
T PRK14268         90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE-------TSDRLKSPALSLSGGQQQR  162 (258)
T ss_pred             HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCChhhCCHHHHHH
Confidence            567889999999999999999999875321  1222    23344444433221       1223345667899999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  242 (258)
T PRK14268        163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH  242 (258)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999999998778999999999999865 89999999999999999998865


Q ss_pred             c
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      .
T Consensus       243 ~  243 (258)
T PRK14268        243 N  243 (258)
T ss_pred             C
Confidence            4

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-40  Score=372.61  Aligned_cols=218  Identities=29%  Similarity=0.464  Sum_probs=186.3

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCC--CCCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLK--SLQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~--~~~~~  448 (1253)
                      .|+++||+++|++.  ++|+|+||+|++||+++|+||||||||||+++|+|++.     |++|+|.++|.++.  ..+..
T Consensus        10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   87 (264)
T PRK14243         10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV   87 (264)
T ss_pred             EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence            48999999999743  49999999999999999999999999999999999986     48999999999985  34556


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCC-----CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI  523 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qri  523 (1253)
                      .+|++|+||+|++.+|+.|++||+.++....     ..+++.++++.+++.+++.       ......+.+||||||||+
T Consensus        88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv  160 (264)
T PRK14243         88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL  160 (264)
T ss_pred             HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence            7788999999999999889999999864321     1233444555555544432       234556778999999999


Q ss_pred             HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEe---------CCEEEEe
Q 000851          524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK---------NGQVVES  593 (1253)
Q Consensus       524 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~---------~G~i~~~  593 (1253)
                      +|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|+         +|++++.
T Consensus       161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~  240 (264)
T PRK14243        161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF  240 (264)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence            9999999999999999999999999999999999998777899999999998865 79999998         8999999


Q ss_pred             eCcchhhhc
Q 000851          594 GTHVDLISK  602 (1253)
Q Consensus       594 g~~~~l~~~  602 (1253)
                      |+++|+.+.
T Consensus       241 ~~~~~~~~~  249 (264)
T PRK14243        241 DRTEKIFNS  249 (264)
T ss_pred             CCHHHHHhC
Confidence            999998654

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-40  Score=383.21  Aligned_cols=228  Identities=22%  Similarity=0.365  Sum_probs=187.7

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC----CCccEEEECCccCCCCCHHHH
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD----PISGTVLIDGYDIRTLNLRSL 1080 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~----p~~G~I~idG~di~~i~~~~l 1080 (1253)
                      |+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+.+    |++|+|.+||.++.+++...+
T Consensus         4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (330)
T PRK15093          4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER   83 (330)
T ss_pred             EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            79999999996432 2469999999999999999999999999999999999986    589999999999998887654


Q ss_pred             h----cceEEEccCCC--ccc-ccHHHHhccCC------C----C--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCC
Q 000851         1081 R----RKIGLVQQEPA--LFS-TTIYENIKYGN------E----D--ASEIELMKATKAANAHGFISRMPEGYQSHVGDR 1141 (1253)
Q Consensus      1081 R----~~i~~V~Qdp~--Lf~-gTIreNl~~g~------~----~--~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~ 1141 (1253)
                      +    ++|+||+|+|.  +++ .||.+|+....      .    .  ...+++.++++.+++.+.-.        .....
T Consensus        84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~~  155 (330)
T PRK15093         84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRSF  155 (330)
T ss_pred             HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhCC
Confidence            3    47999999996  333 58999885310      0    0  01234556666666643210        12233


Q ss_pred             CCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCC
Q 000851         1142 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQG 1218 (1253)
Q Consensus      1142 G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G 1218 (1253)
                      ..+||||||||++|||||+.+|+|||||||||+||+.+...|.+.|+++.+  +.|+|+|||+++.+.. ||+|+||++|
T Consensus       156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G  235 (330)
T PRK15093        156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG  235 (330)
T ss_pred             chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence            468999999999999999999999999999999999999999999998753  7899999999999965 9999999999


Q ss_pred             EEEEecChhHHhhcccchHHHHH
Q 000851         1219 KVAEIGSHEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1219 ~ive~Gt~~eLl~~~~g~y~~L~ 1241 (1253)
                      +|+|.|+++++++.+...|.+.+
T Consensus       236 ~ive~g~~~~i~~~p~~~y~~~l  258 (330)
T PRK15093        236 QTVETAPSKELVTTPHHPYTQAL  258 (330)
T ss_pred             EEEEECCHHHHHhCCCCHHHHHH
Confidence            99999999999876666776543

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=1.6e-40  Score=380.54  Aligned_cols=217  Identities=28%  Similarity=0.486  Sum_probs=178.9

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|++||
T Consensus         4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~   80 (303)
T TIGR01288         4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG   80 (303)
T ss_pred             EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence            4899999999974  3499999999999999999999999999999999999999999999999998653 355688999


Q ss_pred             EEeccCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000851          456 LVSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN  532 (1253)
Q Consensus       456 ~v~Q~~~lf~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~  532 (1253)
                      ||+|++.++. .|++||+.+...  ..+..+..+.++     +.++.+  |+.........+||||||||++|||||+.+
T Consensus        81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~  153 (303)
T TIGR01288        81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP-----SLLEFA--RLESKADVRVALLSGGMKRRLTLARALIND  153 (303)
T ss_pred             EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            9999999885 599999975211  122222222111     112211  222223344468999999999999999999


Q ss_pred             CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       533 p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  225 (303)
T TIGR01288       154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE  225 (303)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            99999999999999999999999999874 47899999999999865 899999999999999999988653

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.9e-40  Score=365.92  Aligned_cols=212  Identities=35%  Similarity=0.556  Sum_probs=173.7

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCH---HHHh
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL---RSLR 1081 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~---~~lR 1081 (1253)
                      |+++||+++|+.+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.   ..+|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR   81 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence            78999999997421 1269999999999999999999999999999999999999999999999999988764   5778


Q ss_pred             cceEEEccCC--Ccc-cccHHHHhccCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChhHHHHH
Q 000851         1082 RKIGLVQQEP--ALF-STTIYENIKYGN----EDASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1082 ~~i~~V~Qdp--~Lf-~gTIreNl~~g~----~~~~d~ei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSgGQkQrl 1153 (1253)
                      ++++|++|+|  .++ ..|+++|+.++.    +...+++...+.     .+.++.+  |++ ........+||||||||+
T Consensus        82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv  154 (228)
T cd03257          82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV  154 (228)
T ss_pred             ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence            9999999999  344 479999997531    111111111110     1223332  332 234555678999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhh-ccCEEEEEeCCEEEEec
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~G 1224 (1253)
                      +|||||+.+|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus       155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            999999999999999999999999999999999998754  789999999999997 49999999999998865

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=1.2e-40  Score=365.72  Aligned_cols=210  Identities=30%  Similarity=0.492  Sum_probs=180.0

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++||+++|+   +.++++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus         7 ~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (225)
T PRK10247          7 LLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV   83 (225)
T ss_pred             eEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence            499999999996   34699999999999999999999999999999999999999999999999999988888889999


Q ss_pred             EEEccCCCcccccHHHHhccCC---CCC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000851         1085 GLVQQEPALFSTTIYENIKYGN---EDA-SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~gTIreNl~~g~---~~~-~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALl 1160 (1253)
                      +|++|++.+|+.|++||+.++.   ... .++++.++++..++.          ++.......+||||||||++|||||+
T Consensus        84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~  153 (225)
T PRK10247         84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQ  153 (225)
T ss_pred             EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            9999999999999999998631   111 122333444444332          12334556789999999999999999


Q ss_pred             cCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhccCEEEEEe-CCEEEEecChh
Q 000851         1161 KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQ-QGKVAEIGSHE 1227 (1253)
Q Consensus      1161 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~-~G~ive~Gt~~ 1227 (1253)
                      ++|++|||||||++||+.+.+.+.+.|++..+  ++|+|+|||+++.+..||++++|+ ++..+++|+|+
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~  223 (225)
T PRK10247        154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE  223 (225)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence            99999999999999999999999999998753  789999999999998899999995 66677888885

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.1e-40  Score=363.78  Aligned_cols=201  Identities=31%  Similarity=0.531  Sum_probs=172.0

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH---HHhcc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLREQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~~  453 (1253)
                      ++++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++..   .+++.
T Consensus         2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (214)
T TIGR02673         2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR   80 (214)
T ss_pred             EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence            6899999999522 3499999999999999999999999999999999999999999999999999876543   46788


Q ss_pred             cEEEeccCccCc-ccHHHHHhcCCCC--C----CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          454 MGLVSQEPALFA-TSIANNILLGKED--A----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       454 i~~v~Q~~~lf~-~ti~~ni~~g~~~--~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      ++|++|++.+|. .|++||+.++...  .    ..+++.++++..++.+++.+.           ..+||||||||++||
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la  149 (214)
T TIGR02673        81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAIA  149 (214)
T ss_pred             eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHHH
Confidence            999999999986 5999999875211  1    123455566666655544433           358999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQ  589 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~  589 (1253)
                      |||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus       150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            99999999999999999999999999999999875 48999999999999876 89999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=7.1e-41  Score=365.13  Aligned_cols=201  Identities=34%  Similarity=0.576  Sum_probs=170.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCC--CCHHHHhcc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT--LNLRSLRRK 1083 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~--i~~~~lR~~ 1083 (1253)
                      |+++||+++|+.   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..  .+...+|++
T Consensus         1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   77 (213)
T cd03262           1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK   77 (213)
T ss_pred             CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence            478999999973   469999999999999999999999999999999999999999999999999853  345678899


Q ss_pred             eEEEccCCCccc-ccHHHHhccCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHH
Q 000851         1084 IGLVQQEPALFS-TTIYENIKYGNE---DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAI 1155 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~-gTIreNl~~g~~---~~~d~----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaL 1155 (1253)
                      ++|+||+|.+|+ .|++||+.++..   ..+.+    ++.++++..++.           ..+.....+||||||||++|
T Consensus        78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~l  146 (213)
T cd03262          78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-----------DKADAYPAQLSGGQQQRVAI  146 (213)
T ss_pred             ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------hHhhhCccccCHHHHHHHHH
Confidence            999999999986 699999987521   12222    233344444433           33334446899999999999


Q ss_pred             HHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEE
Q 000851         1156 ARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKV 1220 (1253)
Q Consensus      1156 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~i 1220 (1253)
                      ||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++
T Consensus       147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999999875 47899999999999965 999999999975

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=4.7e-40  Score=368.94  Aligned_cols=227  Identities=28%  Similarity=0.441  Sum_probs=186.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCcc-----CCCCCHHH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD-----IRTLNLRS 1079 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~d-----i~~i~~~~ 1079 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+     +.+.+...
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~   82 (258)
T PRK11701          6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE   82 (258)
T ss_pred             eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence            4899999999973   469999999999999999999999999999999999999999999999998     87776554


Q ss_pred             ----HhcceEEEccCCC--cc-cccHHHHhccCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChh
Q 000851         1080 ----LRRKIGLVQQEPA--LF-STTIYENIKYGN---EDASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGG 1148 (1253)
Q Consensus      1080 ----lR~~i~~V~Qdp~--Lf-~gTIreNl~~g~---~~~~d~ei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSgG 1148 (1253)
                          +|+.++||||++.  ++ ..|+.+|+.+..   ...+..++.     ..+.++++.++  ++ +..+..+.+||||
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~~--l~~~~~~~~~~~LS~G  155 (258)
T PRK11701         83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERVE--IDAARIDDLPTTFSGG  155 (258)
T ss_pred             HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHcC--CChhHHhCCCccCCHH
Confidence                3668999999984  33 358888886421   111111221     12345555553  33 3456677899999


Q ss_pred             HHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 000851         1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225 (1253)
Q Consensus      1149 QkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt 1225 (1253)
                      ||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+  +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus       156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~  235 (258)
T PRK11701        156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL  235 (258)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999998653  7899999999999975 99999999999999999


Q ss_pred             hhHHhhcccchHHHHH
Q 000851         1226 HEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1226 ~~eLl~~~~g~y~~L~ 1241 (1253)
                      ++++..++...|.+.+
T Consensus       236 ~~~~~~~~~~~~~~~~  251 (258)
T PRK11701        236 TDQVLDDPQHPYTQLL  251 (258)
T ss_pred             HHHHhcCCCCHHHHHH
Confidence            9999865444565443

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=1.2e-40  Score=350.21  Aligned_cols=172  Identities=44%  Similarity=0.741  Sum_probs=162.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+.. ..++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (173)
T cd03246           1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG   79 (173)
T ss_pred             CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence            4789999999742 246999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             EEccCCCcccccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000851         1086 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165 (1253)
Q Consensus      1086 ~V~Qdp~Lf~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~I 1165 (1253)
                      |++|+|.+|++|++||+                                          ||||||||++|||||+++|++
T Consensus        80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~  117 (173)
T cd03246          80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI  117 (173)
T ss_pred             EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999998                                          999999999999999999999


Q ss_pred             EEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhccCEEEEEeCCEE
Q 000851         1166 LLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220 (1253)
Q Consensus      1166 LlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~i 1220 (1253)
                      |||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||++++|++|++
T Consensus       118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            99999999999999999999999875 48899999999999988999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=1.4e-40  Score=363.04  Aligned_cols=202  Identities=33%  Similarity=0.528  Sum_probs=171.4

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH---HHHhcc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL---KWLREQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~~  453 (1253)
                      ++++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+|+.
T Consensus         1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   79 (214)
T cd03292           1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK   79 (214)
T ss_pred             CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence            4789999999643 349999999999999999999999999999999999999999999999999977654   346788


Q ss_pred             cEEEeccCccCcc-cHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          454 MGLVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       454 i~~v~Q~~~lf~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      ++||+|++.+|.. |++||+.++...  .+    .+++.++++..++.+..           .....+||||||||++||
T Consensus        80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la  148 (214)
T cd03292          80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKH-----------RALPAELSGGEQQRVAIA  148 (214)
T ss_pred             eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHHH
Confidence            9999999999975 999999875321  11    12344445555444433           334458999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV  590 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i  590 (1253)
                      ||++.+|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus       149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999999874 57999999999999976 899999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-40  Score=371.09  Aligned_cols=227  Identities=26%  Similarity=0.463  Sum_probs=189.3

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEEC------CccCCCCCHH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID------GYDIRTLNLR 1078 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~id------G~di~~i~~~ 1078 (1253)
                      .|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++      |.++.+.+..
T Consensus        10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~   86 (257)
T PRK14246         10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI   86 (257)
T ss_pred             heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence            5999999999963   469999999999999999999999999999999999999998666555      5777777777


Q ss_pred             HHhcceEEEccCCCcccc-cHHHHhccCCC--CC-CHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHH
Q 000851         1079 SLRRKIGLVQQEPALFST-TIYENIKYGNE--DA-SEIE----LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQK 1150 (1253)
Q Consensus      1079 ~lR~~i~~V~Qdp~Lf~g-TIreNl~~g~~--~~-~d~e----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQk 1150 (1253)
                      .+|++++|+||+|.+|.+ |+++|+.++..  .. .+++    +.++++..++.+++.       ......+..||||||
T Consensus        87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~  159 (257)
T PRK14246         87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ  159 (257)
T ss_pred             HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence            889999999999999975 99999986522  11 2222    344555555433221       123345678999999


Q ss_pred             HHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 000851         1151 QRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1151 QrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ||++||||++++|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus       160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~  239 (257)
T PRK14246        160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI  239 (257)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999999998877899999999999995 5999999999999999999999


Q ss_pred             hhcccchHHHHH
Q 000851         1230 LRKENGIYKQLI 1241 (1253)
Q Consensus      1230 l~~~~g~y~~L~ 1241 (1253)
                      .+.+...|.+.+
T Consensus       240 ~~~~~~~~~~~~  251 (257)
T PRK14246        240 FTSPKNELTEKY  251 (257)
T ss_pred             HhCCCcHHHHHH
Confidence            875555565554

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=386.83  Aligned_cols=212  Identities=31%  Similarity=0.498  Sum_probs=184.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCC----CHHHHh
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL----NLRSLR 1081 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i----~~~~lR 1081 (1253)
                      |++ |++++|.+   . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...    +....|
T Consensus         2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   75 (352)
T PRK11144          2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK   75 (352)
T ss_pred             eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence            567 99999963   2 23 99999999999999999999999999999999999999999999998653    244568


Q ss_pred             cceEEEccCCCccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000851         1082 RKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALl 1160 (1253)
                      ++++||+|++.+|+ .|++||+.++......+++.++++..++.++..+.           ..+||||||||++|||||+
T Consensus        76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalaraL~  144 (352)
T PRK11144         76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGRALL  144 (352)
T ss_pred             CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHHHHH
Confidence            89999999999997 59999999875444455677777777665554443           3679999999999999999


Q ss_pred             cCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhccc
Q 000851         1161 KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1234 (1253)
Q Consensus      1161 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~ 1234 (1253)
                      ++|++||||||||+||+.+.+.+.+.|++..+  ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus       145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~  221 (352)
T PRK11144        145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA  221 (352)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence            99999999999999999999999999998753  7899999999998865 99999999999999999999988654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-40  Score=370.57  Aligned_cols=218  Identities=31%  Similarity=0.514  Sum_probs=185.2

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCC-----CcEEEECCeeCCC--CCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKS--LQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~~  448 (1253)
                      .|+++|++|+|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++.+  .+..
T Consensus         4 ~l~~~~l~~~~~~~--~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~   81 (251)
T PRK14249          4 KIKIRGVNFFYHKH--QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV   81 (251)
T ss_pred             eEEEEEEEEEECCe--eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence            58999999999743  4999999999999999999999999999999999999997     6999999999864  3455


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKED--A-SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+|+.++||+|++.+|+.|++||+.++...  . ..    +.+.++++..++.++       ........+.+|||||||
T Consensus        82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~Gq~q  154 (251)
T PRK14249         82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE-------VKDNLHKSGLALSGGQQQ  154 (251)
T ss_pred             HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------hhhHhhCCcccCCHHHHH
Confidence            778899999999999989999999886321  1 11    223333333443332       223456677899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus       155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14249        155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF  234 (251)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence            999999999999999999999999999999999999988778999999999999876 7999999999999999998876


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       235 ~~  236 (251)
T PRK14249        235 SR  236 (251)
T ss_pred             hC
Confidence            54

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-40  Score=385.71  Aligned_cols=206  Identities=28%  Similarity=0.450  Sum_probs=173.7

Q ss_pred             cccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCe----eCCCCCHHHH---h-cccEEEeccCcc
Q 000851          392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH----DLKSLQLKWL---R-EQMGLVSQEPAL  463 (1253)
Q Consensus       392 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~l  463 (1253)
                      .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.    ++...+...+   | ++|+||+|++.+
T Consensus        38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l  117 (382)
T TIGR03415        38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL  117 (382)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence            3899999999999999999999999999999999999999999999997    5666655443   3 579999999999


Q ss_pred             Cc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 000851          464 FA-TSIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL  536 (1253)
Q Consensus       464 f~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~il  536 (1253)
                      |+ .|++||+.++...  .+    .+++.++++..++.++..           ....+||||||||++|||||+.+|+||
T Consensus       118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~LARALa~~P~IL  186 (382)
T TIGR03415       118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVGLARAFAMDADIL  186 (382)
T ss_pred             CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            97 5999999987421  11    233455555555544433           344589999999999999999999999


Q ss_pred             EEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhhhcC-chHHH
Q 000851          537 LLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG-GEYAA  608 (1253)
Q Consensus       537 ilDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~-~~y~~  608 (1253)
                      |||||||+||+.+.+.+++.|.++.+  ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++ ..|.+
T Consensus       187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~  262 (382)
T TIGR03415       187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA  262 (382)
T ss_pred             EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence            99999999999999999999998854  799999999999975 58999999999999999999998653 34443

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=1.9e-40  Score=371.86  Aligned_cols=215  Identities=29%  Similarity=0.522  Sum_probs=181.9

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCC---------
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---------  445 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~---------  445 (1253)
                      +.++++||+++|+++  .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         4 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (257)
T PRK10619          4 NKLNVIDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV   81 (257)
T ss_pred             ccEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence            469999999999743  499999999999999999999999999999999999999999999999988542         


Q ss_pred             ----CHHHHhcccEEEeccCccCcc-cHHHHHhcCCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCccccc-cCCC
Q 000851          446 ----QLKWLREQMGLVSQEPALFAT-SIANNILLGKE---DASM----DRVIEAAKAANAHSFVEGLPDGYQTQV-GEGG  512 (1253)
Q Consensus       446 ----~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~-g~~g  512 (1253)
                          ....+++.++||+|++.+|.. |++||+.++..   ....    +++.++++..           |+.... ...+
T Consensus        82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~  150 (257)
T PRK10619         82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV-----------GIDERAQGKYP  150 (257)
T ss_pred             ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCChhhhhCCc
Confidence                134667889999999999975 99999986421   1111    2233333333           333332 4556


Q ss_pred             CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000851          513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV  590 (1253)
Q Consensus       513 ~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i  590 (1253)
                      .+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++
T Consensus       151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i  230 (257)
T PRK10619        151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI  230 (257)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence            7899999999999999999999999999999999999999999999885 48999999999999986 899999999999


Q ss_pred             EEeeCcchhhhc
Q 000851          591 VESGTHVDLISK  602 (1253)
Q Consensus       591 ~~~g~~~~l~~~  602 (1253)
                      ++.|+++++...
T Consensus       231 ~~~~~~~~~~~~  242 (257)
T PRK10619        231 EEEGAPEQLFGN  242 (257)
T ss_pred             EEeCCHHHhhhC
Confidence            999999988654

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=2.7e-40  Score=371.74  Aligned_cols=224  Identities=26%  Similarity=0.416  Sum_probs=187.1

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC---ccEEEECCccCCCC-----C
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI---SGTVLIDGYDIRTL-----N 1076 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~---~G~I~idG~di~~i-----~ 1076 (1253)
                      -|+++||+++|+   +.++|+|+||+|++||+++|+|+||||||||+++|.|+++|+   +|+|.+||.++...     +
T Consensus         4 ~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~   80 (262)
T PRK09984          4 IIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD   80 (262)
T ss_pred             EEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence            489999999996   346999999999999999999999999999999999999986   49999999998653     2


Q ss_pred             HHHHhcceEEEccCCCccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCC
Q 000851         1077 LRSLRRKIGLVQQEPALFS-TTIYENIKYGNED--------------ASEIELMKATKAANAHGFISRMPEGYQSHVGDR 1141 (1253)
Q Consensus      1077 ~~~lR~~i~~V~Qdp~Lf~-gTIreNl~~g~~~--------------~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~ 1141 (1253)
                      ...+|++++|+||++.+|+ .|+++|+.++...              ...+++.++++..++.+..           ...
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~  149 (262)
T PRK09984         81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR  149 (262)
T ss_pred             HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence            4567889999999999887 5999999865311              0122345555555554433           334


Q ss_pred             CCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhh-ccCEEEEEeCC
Q 000851         1142 GVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIR-NADKIAVLQQG 1218 (1253)
Q Consensus      1142 G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G 1218 (1253)
                      ..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..  +++|+|++||+++.+. .||+|++|++|
T Consensus       150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g  229 (262)
T PRK09984        150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG  229 (262)
T ss_pred             ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence            46799999999999999999999999999999999999999999999875  3789999999999875 59999999999


Q ss_pred             EEEEecChhHHhhcccchHHHHHHHhh
Q 000851         1219 KVAEIGSHEQLLRKENGIYKQLIRLQQ 1245 (1253)
Q Consensus      1219 ~ive~Gt~~eLl~~~~g~y~~L~~~~~ 1245 (1253)
                      ++++.|+++++ .  .....+++....
T Consensus       230 ~i~~~g~~~~~-~--~~~~~~~~~~~~  253 (262)
T PRK09984        230 HVFYDGSSQQF-D--NERFDHLYRSIN  253 (262)
T ss_pred             EEEEeCCHHHh-c--cHHHHHHHhhhh
Confidence            99999999997 3  245666766544

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=8.3e-41  Score=364.39  Aligned_cols=198  Identities=33%  Similarity=0.558  Sum_probs=167.2

Q ss_pred             EEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEE
Q 000851          378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV  457 (1253)
Q Consensus       378 ~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v  457 (1253)
                      +++||+++|+++  .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.     .+|++++||
T Consensus         1 ~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v   73 (213)
T cd03235           1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV   73 (213)
T ss_pred             CcccceeEECCE--EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence            368999999743  4999999999999999999999999999999999999999999999998764     467789999


Q ss_pred             eccCcc---CcccHHHHHhcCCCCC----------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHH
Q 000851          458 SQEPAL---FATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       458 ~Q~~~l---f~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qria  524 (1253)
                      +|++.+   ++.|++||+.++....          ..+++.++++..++.++..           ....+||||||||++
T Consensus        74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~  142 (213)
T cd03235          74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVL  142 (213)
T ss_pred             ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHH
Confidence            999876   5679999998864311          1234455555555544433           344689999999999


Q ss_pred             HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEee
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       525 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g  594 (1253)
                      |||||+.+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus       143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            9999999999999999999999999999999999875 67899999999999866 8999999886 55544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=1.9e-40  Score=348.73  Aligned_cols=172  Identities=44%  Similarity=0.748  Sum_probs=161.9

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++++|++....+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY   80 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence            47899999997533459999999999999999999999999999999999999999999999999988888888899999


Q ss_pred             EeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 000851          457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKIL  536 (1253)
Q Consensus       457 v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~il  536 (1253)
                      ++|++.+|+.|++||+                                          ||||||||++||||++.+|++|
T Consensus        81 ~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~l  118 (173)
T cd03246          81 LPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRIL  118 (173)
T ss_pred             ECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence            9999999999999997                                          9999999999999999999999


Q ss_pred             EEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000851          537 LLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQV  590 (1253)
Q Consensus       537 ilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i  590 (1253)
                      ||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||++++|++|++
T Consensus       119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            9999999999999999999999875 47899999999999988999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-40  Score=372.84  Aligned_cols=217  Identities=29%  Similarity=0.503  Sum_probs=182.5

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCCCC--HHH
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSLQ--LKW  449 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~~--~~~  449 (1253)
                      -+++||+|+|++  .++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++...+  ...
T Consensus         6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   83 (251)
T PRK14244          6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL   83 (251)
T ss_pred             EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence            478999999974  349999999999999999999999999999999999986     47999999999886543  335


Q ss_pred             HhcccEEEeccCccCcccHHHHHhcCCC--CC--C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          450 LREQMGLVSQEPALFATSIANNILLGKE--DA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       450 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      +|+.++||+|++.+|+.|++||+.++..  +.  .    .+++.++++..++.+++       .+.++..+.+|||||||
T Consensus        84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q  156 (251)
T PRK14244         84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ  156 (251)
T ss_pred             HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence            6889999999999999999999987621  11  1    12334444544443221       22345667789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  236 (251)
T PRK14244        157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF  236 (251)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999999999998778999999999999875 8999999999999999998886


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       237 ~~  238 (251)
T PRK14244        237 KN  238 (251)
T ss_pred             cC
Confidence            54

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-40  Score=370.12  Aligned_cols=219  Identities=28%  Similarity=0.490  Sum_probs=184.6

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC--C---CCcEEEECCeeCCCC--CH
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDLKSL--QL  447 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~~--~~  447 (1253)
                      +.|+++|++|+|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++...  +.
T Consensus         3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~   80 (252)
T PRK14256          3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP   80 (252)
T ss_pred             cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence            56999999999974  349999999999999999999999999999999999986  4   699999999998643  44


Q ss_pred             HHHhcccEEEeccCccCc-ccHHHHHhcCCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHH
Q 000851          448 KWLREQMGLVSQEPALFA-TSIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQ  519 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~-~ti~~ni~~g~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq  519 (1253)
                      ..+|+.|+|++|++.+|. .|++||+.++...   .+    .+++.++++..++.+++.       ...+..+.+|||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~  153 (252)
T PRK14256         81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQ  153 (252)
T ss_pred             HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHHH
Confidence            567889999999999997 5999999875311   11    123444555555433222       22345667899999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcch
Q 000851          520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD  598 (1253)
Q Consensus       520 ~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~  598 (1253)
                      |||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus       154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  233 (252)
T PRK14256        154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK  233 (252)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999999778999999999999865 89999999999999999998


Q ss_pred             hhhc
Q 000851          599 LISK  602 (1253)
Q Consensus       599 l~~~  602 (1253)
                      +...
T Consensus       234 ~~~~  237 (252)
T PRK14256        234 IFTT  237 (252)
T ss_pred             HHhC
Confidence            8654

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=3.4e-40  Score=360.77  Aligned_cols=210  Identities=28%  Similarity=0.449  Sum_probs=186.1

Q ss_pred             EEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH----HHHhcc
Q 000851          378 EFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL----KWLREQ  453 (1253)
Q Consensus       378 ~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~----~~~r~~  453 (1253)
                      .+.|+.|+|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.    ...|+.
T Consensus         2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   80 (218)
T cd03290           2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS   80 (218)
T ss_pred             eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence            578999999754 359999999999999999999999999999999999999999999999998866542    345678


Q ss_pred             cEEEeccCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          454 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       454 i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      ++|++|++.+|+.|++||+.++.+ ...++..++++..++.+++..+|.|+++.++....+||||||||++||||++.+|
T Consensus        81 i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p  159 (218)
T cd03290          81 VAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT  159 (218)
T ss_pred             EEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence            999999999998899999998754 2445667778888888889999999999999999999999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHH--HHHHHc-CCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000851          534 KILLLDEATSALDAESELIVQR--ALEKIM-SNRTTIVVAHRLSTVRDVDTIMVLKNGQ  589 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~--~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~  589 (1253)
                      ++|||||||++||+.+...+.+  .++.++ +++|+|++||+.+.+..||++++|++|+
T Consensus       160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            9999999999999999998887  555554 3789999999999998899999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-40  Score=372.49  Aligned_cols=214  Identities=26%  Similarity=0.440  Sum_probs=185.3

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhccc
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i  454 (1253)
                      ..|+++||+++|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus         6 ~~l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (265)
T PRK10253          6 ARLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI   83 (265)
T ss_pred             cEEEEEEEEEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            368999999999743  499999999999999999999999999999999999999999999999999888877888899


Q ss_pred             EEEeccCccCc-ccHHHHHhcCC-CC------C---CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 000851          455 GLVSQEPALFA-TSIANNILLGK-ED------A---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI  523 (1253)
Q Consensus       455 ~~v~Q~~~lf~-~ti~~ni~~g~-~~------~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qri  523 (1253)
                      +||+|++.+|. .|++||+.++. +.      .   ..+++.++++..++.++.           ...+.+||||||||+
T Consensus        84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv  152 (265)
T PRK10253         84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQRQRA  152 (265)
T ss_pred             EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHHHHH
Confidence            99999998875 59999998753 11      0   122345555555554433           345568999999999


Q ss_pred             HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       524 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      +||||++.+|++|||||||++||+.+.+.+.+.|.++.+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999999998853  7899999999998865 8999999999999999998876


Q ss_pred             h
Q 000851          601 S  601 (1253)
Q Consensus       601 ~  601 (1253)
                      .
T Consensus       233 ~  233 (265)
T PRK10253        233 T  233 (265)
T ss_pred             h
Confidence            5

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-40  Score=373.39  Aligned_cols=218  Identities=30%  Similarity=0.478  Sum_probs=184.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCC--CCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~  448 (1253)
                      -++++|++|+|++.  .+|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|.++..  .+..
T Consensus        24 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~  101 (271)
T PRK14238         24 VFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE  101 (271)
T ss_pred             EEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence            59999999999743  49999999999999999999999999999999999997     699999999999853  3456


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCC--CCCHH-----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKE--DASMD-----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~~~~-----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .++++++|++|++.+|..|++||+.++..  ...++     .+.++++..++.       +++.......+.+|||||||
T Consensus       102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~q  174 (271)
T PRK14238        102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQQ  174 (271)
T ss_pred             HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHHH
Confidence            67889999999999998999999987532  11111     122223222221       12333456677899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~  254 (271)
T PRK14238        175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF  254 (271)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998778999999999999865 8999999999999999999886


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       255 ~~  256 (271)
T PRK14238        255 SN  256 (271)
T ss_pred             cC
Confidence            54

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-40  Score=371.14  Aligned_cols=212  Identities=26%  Similarity=0.395  Sum_probs=183.5

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC--------ccEEEECCccCCCCCH
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI--------SGTVLIDGYDIRTLNL 1077 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~--------~G~I~idG~di~~i~~ 1077 (1253)
                      |+++|++++|+   +.++|+|+||+|++||++||+||||||||||+++|.|+++|+        +|+|.+||.++...+.
T Consensus         2 l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~   78 (272)
T PRK13547          2 LTADHLHVARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA   78 (272)
T ss_pred             eEEEEEEEEEC---CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence            78999999996   346999999999999999999999999999999999999998        9999999999988888


Q ss_pred             HHHhcceEEEccCCC-cccccHHHHhccCCC-C------CC---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 000851         1078 RSLRRKIGLVQQEPA-LFSTTIYENIKYGNE-D------AS---EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLS 1146 (1253)
Q Consensus      1078 ~~lR~~i~~V~Qdp~-Lf~gTIreNl~~g~~-~------~~---d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1146 (1253)
                      ..+|+.++|+||++. +|+.|++||+.++.. .      .+   ++.+.++++..++           ++.++....+||
T Consensus        79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS  147 (272)
T PRK13547         79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGRDVTTLS  147 (272)
T ss_pred             HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCC
Confidence            888889999999986 578899999987521 1      01   1223444444444           444455567899


Q ss_pred             hhHHHHHHHHHHhc---------cCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEE
Q 000851         1147 GGQKQRVAIARAIL---------KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAV 1214 (1253)
Q Consensus      1147 gGQkQrlaLARALl---------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~V 1214 (1253)
                      ||||||++|||||+         .+|++|||||||++||+.+.+.+.+.|++..+  ++|+|+|||+++.+.+ ||++++
T Consensus       148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~  227 (272)
T PRK13547        148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM  227 (272)
T ss_pred             HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence            99999999999999         59999999999999999999999999998753  7899999999999964 999999


Q ss_pred             EeCCEEEEecChhHHhh
Q 000851         1215 LQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1215 l~~G~ive~Gt~~eLl~ 1231 (1253)
                      |++|++++.|++++++.
T Consensus       228 l~~G~i~~~g~~~~~~~  244 (272)
T PRK13547        228 LADGAIVAHGAPADVLT  244 (272)
T ss_pred             EECCeEEEecCHHHHcC
Confidence            99999999999999875

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-40  Score=369.42  Aligned_cols=218  Identities=26%  Similarity=0.444  Sum_probs=185.0

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCCC--CHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~~  448 (1253)
                      -|+++|++|+|+++  .+|+|+||++++||+++|+||||||||||+++|+|+.+|     ++|+|.++|+++...  +..
T Consensus         6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   83 (253)
T PRK14261          6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV   83 (253)
T ss_pred             eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence            48999999999743  499999999999999999999999999999999999763     489999999998765  456


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      ..++.|+|++|++.+|+.|++||+.++....   .    ++++.++++..++.+       ++.+..++.+.+|||||||
T Consensus        84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q  156 (253)
T PRK14261         84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQ  156 (253)
T ss_pred             hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHH
Confidence            6788899999999999899999999864211   1    122333444433322       2334456777899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus       157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14261        157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF  236 (253)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence            999999999999999999999999999999999999998778999999999999965 8999999999999999998886


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       237 ~~  238 (253)
T PRK14261        237 EN  238 (253)
T ss_pred             hC
Confidence            54

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=1.7e-40  Score=382.89  Aligned_cols=217  Identities=28%  Similarity=0.499  Sum_probs=180.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .|+++|++++|++.  .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+ ...++.||
T Consensus        41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig  117 (340)
T PRK13536         41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG  117 (340)
T ss_pred             eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence            49999999999743  4999999999999999999999999999999999999999999999999987654 46788999


Q ss_pred             EEeccCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000851          456 LVSQEPALFA-TSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN  532 (1253)
Q Consensus       456 ~v~Q~~~lf~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~  532 (1253)
                      ||||++.++. .|++||+.+...  ..+.++..+.++  .+.++ .++++..++.    ..+||||||||++|||||+.+
T Consensus       118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~-~~L~~~~~~~----~~~LS~G~kqrv~lA~aL~~~  190 (340)
T PRK13536        118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEF-ARLESKADAR----VSDLSGGMKRRLTLARALIND  190 (340)
T ss_pred             EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCchhhCCC----hhhCCHHHHHHHHHHHHHhcC
Confidence            9999999875 599999985321  112222222111  11111 1334333443    457999999999999999999


Q ss_pred             CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       533 p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus       191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            99999999999999999999999999885 48999999999999965 899999999999999999998653

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-40  Score=377.56  Aligned_cols=219  Identities=29%  Similarity=0.527  Sum_probs=186.9

Q ss_pred             CcEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCccEEEECCccCCCC--C
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD-----PISGTVLIDGYDIRTL--N 1076 (1253)
Q Consensus      1004 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~-----p~~G~I~idG~di~~i--~ 1076 (1253)
                      ..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++...  +
T Consensus        44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~  120 (305)
T PRK14264         44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN  120 (305)
T ss_pred             ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            46999999999973   469999999999999999999999999999999999986     6899999999998653  4


Q ss_pred             HHHHhcceEEEccCCCcccccHHHHhccCCCC-------------------CCHHHHHHHHHHhcHHHHHHhCCCCcccc
Q 000851         1077 LRSLRRKIGLVQQEPALFSTTIYENIKYGNED-------------------ASEIELMKATKAANAHGFISRMPEGYQSH 1137 (1253)
Q Consensus      1077 ~~~lR~~i~~V~Qdp~Lf~gTIreNl~~g~~~-------------------~~d~ei~~al~~a~l~~~I~~lp~gldt~ 1137 (1253)
                      ...+|++++||||++.+|++|++||+.++...                   ..++++.++++.+++.       .++++.
T Consensus       121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~  193 (305)
T PRK14264        121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDR  193 (305)
T ss_pred             HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHH
Confidence            56788999999999999999999999875211                   0122344455554442       233445


Q ss_pred             ccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcCCceEEEEccCchhhhc-cCEE-EEE
Q 000851         1138 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKI-AVL 1215 (1253)
Q Consensus      1138 vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I-~Vl 1215 (1253)
                      +...+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++ ++|
T Consensus       194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l  273 (305)
T PRK14264        194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL  273 (305)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence            56667899999999999999999999999999999999999999999999998777899999999999865 9997 578


Q ss_pred             eCCEEEEecChhHHhhc
Q 000851         1216 QQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1216 ~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ++|++++.|+++++.+.
T Consensus       274 ~~G~i~~~g~~~~~~~~  290 (305)
T PRK14264        274 TGGELVEYDDTDKIFEN  290 (305)
T ss_pred             cCCEEEEeCCHHHHHhC
Confidence            99999999999999764

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-40  Score=368.67  Aligned_cols=217  Identities=29%  Similarity=0.485  Sum_probs=184.7

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCC-CCCHHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLK-SLQLKW  449 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~-~~~~~~  449 (1253)
                      .++++|++++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++. ..+...
T Consensus         3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~   80 (249)
T PRK14253          3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD   80 (249)
T ss_pred             eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence            4789999999974  3499999999999999999999999999999999999986     5999999999985 445667


Q ss_pred             HhcccEEEeccCccCcccHHHHHhcCCCC--CC-----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          450 LREQMGLVSQEPALFATSIANNILLGKED--AS-----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       450 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      +|+.++|++|++.+|..|++||+.++...  ..     .+++.++++..++.+.+       .+.....+.+||||||||
T Consensus        81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qr  153 (249)
T PRK14253         81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQR  153 (249)
T ss_pred             HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHH
Confidence            88899999999999999999999876321  11     12333444444443322       234455677899999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus       154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  233 (249)
T PRK14253        154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS  233 (249)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            99999999999999999999999999999999999998778999999999999876 89999999999999999887754

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-40  Score=379.06  Aligned_cols=223  Identities=27%  Similarity=0.453  Sum_probs=184.1

Q ss_pred             cEEEEEEEEECCCC--------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCH
Q 000851          376 QIEFSEVCFAYPSR--------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQL  447 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~--------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~  447 (1253)
                      -|+++|++++|+..        ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~   84 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP   84 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence            48999999999631        1349999999999999999999999999999999999999999999999999988764


Q ss_pred             H---HHhcccEEEeccCc--cCcc-cHHHHHhcCC---CCCC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCC
Q 000851          448 K---WLREQMGLVSQEPA--LFAT-SIANNILLGK---EDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ  514 (1253)
Q Consensus       448 ~---~~r~~i~~v~Q~~~--lf~~-ti~~ni~~g~---~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~  514 (1253)
                      .   .+|++|+||+|+|.  |++. |+.+|+..+.   ....    .+++.++++..++.+      +    .....+.+
T Consensus        85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~----~~~~~p~~  154 (327)
T PRK11308         85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------E----HYDRYPHM  154 (327)
T ss_pred             HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------H----HhcCCCcc
Confidence            3   46778999999983  5553 9999886421   1111    233444555554421      1    12344568


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 000851          515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVV  591 (1253)
Q Consensus       515 LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~  591 (1253)
                      ||||||||++|||||+.+|++||+||||++||..++..+.+.|.++.+  |.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus       155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv  234 (327)
T PRK11308        155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV  234 (327)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999998853  7899999999999975 8999999999999


Q ss_pred             EeeCcchhhhcC-chHHH
Q 000851          592 ESGTHVDLISKG-GEYAA  608 (1253)
Q Consensus       592 ~~g~~~~l~~~~-~~y~~  608 (1253)
                      |.|+.++++++. ..|.+
T Consensus       235 e~g~~~~~~~~p~hpyt~  252 (327)
T PRK11308        235 EKGTKEQIFNNPRHPYTQ  252 (327)
T ss_pred             EECCHHHHhcCCCCHHHH
Confidence            999999998763 34544

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=3.6e-40  Score=363.28  Aligned_cols=207  Identities=28%  Similarity=0.374  Sum_probs=175.6

Q ss_pred             cEEEEEEEEECCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH---H
Q 000851          376 QIEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---L  450 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~  450 (1253)
                      .|+++|++++|++..  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...   .
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   85 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL   85 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence            489999999997532  24999999999999999999999999999999999999999999999999998776543   2


Q ss_pred             -hcccEEEeccCccCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          451 -REQMGLVSQEPALFAT-SIANNILLGKE--DAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       451 -r~~i~~v~Q~~~lf~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                       ++.++|++|++.+|.. |++||+.++..  ...    .+++.++++..++.+++..           ...+||||||||
T Consensus        86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~qr  154 (228)
T PRK10584         86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQR  154 (228)
T ss_pred             HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHH
Confidence             3579999999999875 99999986421  111    2345555555555544443           345899999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-S-NRTTIVVAHRLSTVRDVDTIMVLKNGQVVES  593 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~  593 (1253)
                      ++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||++++|++|+++++
T Consensus       155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence            999999999999999999999999999999999999874 3 7899999999999888999999999999764

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=2.8e-40  Score=365.21  Aligned_cols=210  Identities=36%  Similarity=0.606  Sum_probs=182.3

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|+.    ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++...+.  .|++++
T Consensus         1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~   74 (235)
T cd03299           1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS   74 (235)
T ss_pred             CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence            478999999962    27999999999999999999999999999999999999999999999999887654  378999


Q ss_pred             EEccCCCccc-ccHHHHhccCCCC--C----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFS-TTIYENIKYGNED--A----SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~~~--~----~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |++|++.+|+ .|++||+.++...  .    .++++.++++..++.+++.+.           ..+||||||||++||||
T Consensus        75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara  143 (235)
T cd03299          75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARA  143 (235)
T ss_pred             EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHH
Confidence            9999999985 7999999864321  1    123455666666665554433           35799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ++++|++|+|||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  220 (235)
T cd03299         144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK  220 (235)
T ss_pred             HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence            9999999999999999999999999999998653  8999999999999875 999999999999999999999874

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.5e-41  Score=337.23  Aligned_cols=213  Identities=28%  Similarity=0.477  Sum_probs=181.8

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      +++.+++++|++ ...+++||||+++.||+++|.|||||||||++++|..++.|++|.|++||.|... ++...|++||+
T Consensus         2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV   79 (245)
T COG4555           2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV   79 (245)
T ss_pred             eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence            678999999985 3348999999999999999999999999999999999999999999999999865 45667889999


Q ss_pred             EeccCccCcc-cHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFAT-SIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      ++-+.-|+.. |++|||.|...-.  .    ..++.+..+..+           ++.....+..++|-|+||||+|||||
T Consensus        80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~-----------l~~~~~rRv~~~S~G~kqkV~iARAl  148 (245)
T COG4555          80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQ-----------LLEYLDRRVGEFSTGMKQKVAIARAL  148 (245)
T ss_pred             ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhC-----------hHHHHHHHHhhhchhhHHHHHHHHHH
Confidence            9988888866 9999998742211  1    122333333333           33334445567999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ++||++++||||||+||..+.+.+++.+.+++. |+++|+.||.+++++. ||+++++++|+++..|+.+++.++
T Consensus       149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r  223 (245)
T COG4555         149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR  223 (245)
T ss_pred             hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence            999999999999999999999999999999876 8999999999999985 999999999999999999988765

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-40  Score=369.05  Aligned_cols=218  Identities=28%  Similarity=0.457  Sum_probs=184.9

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCCC--CHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~~  448 (1253)
                      .|+++|++++|++  ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++...  +..
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   81 (251)
T PRK14270          4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV   81 (251)
T ss_pred             EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence            5899999999974  3499999999999999999999999999999999999875     799999999998643  345


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDA---S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+|+.++|++|++.+|+.|++||+.++....   +    .+++.++++..++.+.+       .......+..|||||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q  154 (251)
T PRK14270         82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-------KDDLKKSALKLSGGQQQ  154 (251)
T ss_pred             HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHHH
Confidence            6788899999999999999999998763211   1    12334455555443222       22344567789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus       155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14270        155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF  234 (251)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence            999999999999999999999999999999999999998778999999999999876 8999999999999999999886


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       235 ~~  236 (251)
T PRK14270        235 LE  236 (251)
T ss_pred             cC
Confidence            54

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=2.5e-40  Score=378.19  Aligned_cols=216  Identities=23%  Similarity=0.445  Sum_probs=183.6

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.+||
T Consensus         3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~   79 (301)
T TIGR03522         3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY   79 (301)
T ss_pred             EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence            789999999974  349999999999999999999999999999999999999999999999999876 34567889999


Q ss_pred             EeccCccCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          457 VSQEPALFAT-SIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      +||++.+|.. |+.||+.+....  ...++..+.     +++.++.+  |++........+||||||||++|||||+.+|
T Consensus        80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p  152 (301)
T TIGR03522        80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP  152 (301)
T ss_pred             ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence            9999999976 999999763211  111111111     12233333  4554555667789999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          534 KILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ++|||||||++||+.+.+.+++.++++.+++|+|++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus       153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (301)
T TIGR03522       153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA  222 (301)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence            999999999999999999999999999878999999999999876 899999999999999999998654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=1.8e-40  Score=381.95  Aligned_cols=225  Identities=27%  Similarity=0.449  Sum_probs=184.4

Q ss_pred             cEEEEEEEEECCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCC---CcEEEECCeeCCCCCHHHH
Q 000851          376 QIEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSLQLKWL  450 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~~~~~~  450 (1253)
                      -++++|++++|+..  ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|+   +|+|.+||.++..++.+++
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~   91 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL   91 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            58999999999642  234999999999999999999999999999999999999996   9999999999988876655


Q ss_pred             h----cccEEEeccC--ccCc-ccHHHHHhcCC---CCCCHHH----HHHHHHHhCcHHHHhcCCCCccccccCCCCCCC
Q 000851          451 R----EQMGLVSQEP--ALFA-TSIANNILLGK---EDASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS  516 (1253)
Q Consensus       451 r----~~i~~v~Q~~--~lf~-~ti~~ni~~g~---~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS  516 (1253)
                      +    +.|+||+|+|  .+++ .|+.+|+....   ...+.++    +.+.++..       ++|++. ..++..+.+||
T Consensus        92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~-~~~~~~p~~LS  163 (330)
T PRK09473         92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEAR-KRMKMYPHEFS  163 (330)
T ss_pred             HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChH-HHhcCCcccCC
Confidence            3    4799999998  4554 38888775321   1122222    22222222       344433 23567788999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEe
Q 000851          517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVES  593 (1253)
Q Consensus       517 gGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~  593 (1253)
                      ||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+  +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus       164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~  243 (330)
T PRK09473        164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY  243 (330)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999998854  7899999999999875 899999999999999


Q ss_pred             eCcchhhhcC-chHHH
Q 000851          594 GTHVDLISKG-GEYAA  608 (1253)
Q Consensus       594 g~~~~l~~~~-~~y~~  608 (1253)
                      |+++++.+.. ..|.+
T Consensus       244 g~~~~i~~~p~~pyt~  259 (330)
T PRK09473        244 GNARDVFYQPSHPYSI  259 (330)
T ss_pred             CCHHHHHhCCCCHHHH
Confidence            9999998763 34554

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=3.9e-40  Score=358.58  Aligned_cols=201  Identities=28%  Similarity=0.519  Sum_probs=173.1

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++++|++.   . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++|
T Consensus         1 i~~~~l~~~~~~~---~-~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~   74 (211)
T cd03298           1 VRLDKIRFSYGEQ---P-MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM   74 (211)
T ss_pred             CEEEeEEEEeCCE---e-cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence            5789999999742   2 39999999999999999999999999999999999999999999999876554  3578999


Q ss_pred             EeccCccCcc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFAT-SIANNILLGKE-D-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~-~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      ++|++.+|.. |++||+.++.. .     ...+++.++++..++.+.....|           .+||||||||++||||+
T Consensus        75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al  143 (211)
T cd03298          75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL  143 (211)
T ss_pred             EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence            9999999976 99999987642 1     12335666666666665554443           48999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEee
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g  594 (1253)
                      +.+|++|||||||++||+++.+.+.+.|+++.  +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus       144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            99999999999999999999999999999875  37899999999999866 8999999999998764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-40  Score=368.71  Aligned_cols=218  Identities=31%  Similarity=0.521  Sum_probs=184.3

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCCC--CHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~~  448 (1253)
                      -|+++|++|+|+++  ++|+|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.+||.++...  +..
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~   80 (250)
T PRK14262          3 IIEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT   80 (250)
T ss_pred             eEEEEeeEEEeCCc--eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence            38999999999743  499999999999999999999999999999999999984     899999999998653  344


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+++.++|++|++.+|..|++||+.++...   ..    ++++.++++..++.+.+       +......+.+|||||||
T Consensus        81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q  153 (250)
T PRK14262         81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ  153 (250)
T ss_pred             HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence            667889999999999999999999875311   11    12234445555443322       22345667899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14262        154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV  233 (250)
T ss_pred             HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            999999999999999999999999999999999999998778999999999998755 8999999999999999999887


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       234 ~~  235 (250)
T PRK14262        234 ER  235 (250)
T ss_pred             hC
Confidence            54

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.1e-40  Score=370.22  Aligned_cols=218  Identities=27%  Similarity=0.479  Sum_probs=185.4

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCCCC-HHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSLQ-LKW  449 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~-~~~  449 (1253)
                      .++++||+|+|++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.+.+ ...
T Consensus        21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   98 (276)
T PRK14271         21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE   98 (276)
T ss_pred             EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence            5899999999974  3499999999999999999999999999999999999986     7999999999987653 456


Q ss_pred             HhcccEEEeccCccCcccHHHHHhcCCCC---CCHHHHHH----HHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          450 LREQMGLVSQEPALFATSIANNILLGKED---ASMDRVIE----AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       450 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~---~~~~~~~~----~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      +++.|+|++|++.+|+.|++||+.++...   .+.++..+    .++..+       +++.+.+.+...+.+||||||||
T Consensus        99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~l~~~~~~LSgGq~qr  171 (276)
T PRK14271         99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVG-------LWDAVKDRLSDSPFRLSGGQQQL  171 (276)
T ss_pred             HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-------CCchhhhHhhCCcccCCHHHHHH
Confidence            78899999999999999999999876321   23333322    222222       22222344566778999999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhh
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  251 (276)
T PRK14271        172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS  251 (276)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999998777899999999999865 89999999999999999999876


Q ss_pred             c
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      .
T Consensus       252 ~  252 (276)
T PRK14271        252 S  252 (276)
T ss_pred             C
Confidence            5

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-40  Score=378.70  Aligned_cols=224  Identities=26%  Similarity=0.410  Sum_probs=181.5

Q ss_pred             EEEEEEEEECCCCC--CcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC----CCCcEEEECCeeCCCCCHHHH
Q 000851          377 IEFSEVCFAYPSRP--HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE----PTSGKILLDGHDLKSLQLKWL  450 (1253)
Q Consensus       377 i~~~~v~f~y~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~~~~~~~~~~  450 (1253)
                      ++++|++++|+...  ..+|+||||+|++||++||||+||||||||+++|+|+++    |++|+|.++|+|+.+++.+.+
T Consensus         4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~   83 (326)
T PRK11022          4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER   83 (326)
T ss_pred             EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            79999999997532  249999999999999999999999999999999999998    489999999999988877655


Q ss_pred             h----cccEEEeccCc--cCcc-cHHHHHhc----CCCCC---CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCC
Q 000851          451 R----EQMGLVSQEPA--LFAT-SIANNILL----GKEDA---SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLS  516 (1253)
Q Consensus       451 r----~~i~~v~Q~~~--lf~~-ti~~ni~~----g~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS  516 (1253)
                      +    +.|+||+|+|.  +++. |+.+|+..    .....   ..+++.++++..++.+.        ....+..+.+||
T Consensus        84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS  155 (326)
T PRK11022         84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS  155 (326)
T ss_pred             HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence            4    36999999985  4432 66655532    11111   12334455555544321        123456677999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEe
Q 000851          517 GGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVES  593 (1253)
Q Consensus       517 gGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~  593 (1253)
                      ||||||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+  |.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus       156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~  235 (326)
T PRK11022        156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET  235 (326)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999999853  789999999999985 4899999999999999


Q ss_pred             eCcchhhhcC-chHHH
Q 000851          594 GTHVDLISKG-GEYAA  608 (1253)
Q Consensus       594 g~~~~l~~~~-~~y~~  608 (1253)
                      |+.+++.++. ..|.+
T Consensus       236 g~~~~~~~~p~hpyt~  251 (326)
T PRK11022        236 GKAHDIFRAPRHPYTQ  251 (326)
T ss_pred             CCHHHHhhCCCChHHH
Confidence            9999998763 34543

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.5e-40  Score=369.55  Aligned_cols=212  Identities=26%  Similarity=0.470  Sum_probs=182.1

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++|+++.|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         2 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (256)
T TIGR03873         2 LRLSRVSWSAGGR--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL   79 (256)
T ss_pred             ceEEeEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence            6899999999753  49999999999999999999999999999999999999999999999999988888888888999


Q ss_pred             EeccCcc-CcccHHHHHhcCCCCC----------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHH
Q 000851          457 VSQEPAL-FATSIANNILLGKEDA----------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       457 v~Q~~~l-f~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriai  525 (1253)
                      ++|++.+ +..|++||+.++....          ..+++.++++..++.           ......+..||||||||++|
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~l  148 (256)
T TIGR03873        80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-----------HLADRDMSTLSGGERQRVHV  148 (256)
T ss_pred             ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHHHHHHHHH
Confidence            9999864 4579999998863210          112334444444433           33344567899999999999


Q ss_pred             HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhhh
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       526 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus       149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (256)
T TIGR03873       149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT  226 (256)
T ss_pred             HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence            9999999999999999999999999999999998854 789999999999995 589999999999999999988754

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.6e-40  Score=380.36  Aligned_cols=200  Identities=28%  Similarity=0.477  Sum_probs=172.2

Q ss_pred             cccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceEEEccCCCcccc-cHH
Q 000851         1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIY 1099 (1253)
Q Consensus      1021 ~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~Lf~g-TIr 1099 (1253)
                      .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|+. |++
T Consensus         6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~   84 (302)
T TIGR01188         6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR   84 (302)
T ss_pred             eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence            469999999999999999999999999999999999999999999999999876 445678999999999999875 999


Q ss_pred             HHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccC
Q 000851         1100 ENIKYGNE--DAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173 (1253)
Q Consensus      1100 eNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS 1173 (1253)
                      ||+.+...  ..+    ++++.++++..++.+.           ......+||||||||++|||||+++|++|||||||+
T Consensus        85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~  153 (302)
T TIGR01188        85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT  153 (302)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            99986421  112    2234445555554332           223346799999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1174 ALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1174 ~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      +||+.+.+.+++.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus       154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  214 (302)
T TIGR01188       154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR  214 (302)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence            999999999999999875 47899999999999976 999999999999999999999764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=2.3e-40  Score=368.85  Aligned_cols=213  Identities=24%  Similarity=0.367  Sum_probs=175.3

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCccEEEECCccCCCCCHHHH-hc
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF--YDPISGTVLIDGYDIRTLNLRSL-RR 1082 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~--~~p~~G~I~idG~di~~i~~~~l-R~ 1082 (1253)
                      |+++||+++|+   +.++|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.+||.++...+.... |.
T Consensus         1 l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (243)
T TIGR01978         1 LKIKDLHVSVE---DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA   77 (243)
T ss_pred             CeEeeEEEEEC---CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence            47899999996   34699999999999999999999999999999999999  47999999999999988877654 45


Q ss_pred             ceEEEccCCCcccc-cHHHHhccCCCC---------CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCC-CCCh
Q 000851         1083 KIGLVQQEPALFST-TIYENIKYGNED---------ASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGV-QLSG 1147 (1253)
Q Consensus      1083 ~i~~V~Qdp~Lf~g-TIreNl~~g~~~---------~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~-~LSg 1147 (1253)
                      .++||||+|.+|++ |++||+.+....         .+.    +.+.++++..++.+       .   ....... .|||
T Consensus        78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~---~~~~~~~~~LS~  147 (243)
T TIGR01978        78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-------E---FLNRSVNEGFSG  147 (243)
T ss_pred             ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-------h---hcccccccCcCH
Confidence            69999999999875 899998653110         111    12333333333321       1   1122222 4999


Q ss_pred             hHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc--cCEEEEEeCCEEEEec
Q 000851         1148 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN--ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1148 GQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--~D~I~Vl~~G~ive~G 1224 (1253)
                      |||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+..  ||+|++|++|++++.|
T Consensus       148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g  227 (243)
T TIGR01978       148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG  227 (243)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence            99999999999999999999999999999999999999999875 47899999999999976  7999999999999999


Q ss_pred             ChhHHhh
Q 000851         1225 SHEQLLR 1231 (1253)
Q Consensus      1225 t~~eLl~ 1231 (1253)
                      +++++..
T Consensus       228 ~~~~~~~  234 (243)
T TIGR01978       228 DVELAKE  234 (243)
T ss_pred             CHHHhcc
Confidence            9986543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=4.7e-40  Score=360.72  Aligned_cols=204  Identities=30%  Similarity=0.484  Sum_probs=171.9

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH---HHhcc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK---WLREQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~~  453 (1253)
                      |+++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .+|+.
T Consensus         2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   80 (222)
T PRK10908          2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ   80 (222)
T ss_pred             EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence            6899999999422 3499999999999999999999999999999999999999999999999999876543   36789


Q ss_pred             cEEEeccCccC-cccHHHHHhcCCC--CCCHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          454 MGLVSQEPALF-ATSIANNILLGKE--DASMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       454 i~~v~Q~~~lf-~~ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      ++|++|++.++ +.|++||+.++..  ..+.+    ++.++++..++.+++           .....+||||||||++||
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la  149 (222)
T PRK10908         81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGIA  149 (222)
T ss_pred             eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHHH
Confidence            99999999875 5699999987531  12222    233444444443333           344568999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE  592 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~  592 (1253)
                      ||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus       150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999999999999999999999999999999875 47899999999999976 79999999999864

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.2e-40  Score=358.54  Aligned_cols=202  Identities=35%  Similarity=0.585  Sum_probs=176.3

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      ++++||+++|+.     +++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+  .+|+.++
T Consensus         1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~   73 (213)
T TIGR01277         1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS   73 (213)
T ss_pred             CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence            368999999961     468999999999999999999999999999999999999999999999987643  4678899


Q ss_pred             EEccCCCcccc-cHHHHhccCC-CC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFST-TIYENIKYGN-ED-----ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~-~~-----~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      ||||+|.+|.+ |++||+.++. +.     ..++++.++++..++.+...+.|           .+||||||||++||||
T Consensus        74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara  142 (213)
T TIGR01277        74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC  142 (213)
T ss_pred             EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence            99999999874 9999997642 11     12345667788888776665544           4799999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt 1225 (1253)
                      ++++|+++||||||++||+++.+.+.+.|++..+  ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus       143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            9999999999999999999999999999998753  7899999999999865 99999999999999875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-40  Score=372.85  Aligned_cols=214  Identities=32%  Similarity=0.567  Sum_probs=180.8

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCC--CCHHHHhccc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWLREQM  454 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~i  454 (1253)
                      |+++||+++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .+...+++.|
T Consensus         2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   80 (275)
T PRK13639          2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV   80 (275)
T ss_pred             EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence            6899999999632 349999999999999999999999999999999999999999999999999852  2345678899


Q ss_pred             EEEeccC--ccCcccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHH
Q 000851          455 GLVSQEP--ALFATSIANNILLGKED--ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIA  526 (1253)
Q Consensus       455 ~~v~Q~~--~lf~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiA  526 (1253)
                      +|++|++  .+|+.|+.||+.++...  .+.    +++.++++..++.++           ....+.+||||||||++||
T Consensus        81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~Gq~qrv~la  149 (275)
T PRK13639         81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF-----------ENKPPHHLSGGQKKRVAIA  149 (275)
T ss_pred             EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchh-----------hcCChhhCCHHHHHHHHHH
Confidence            9999997  57888999999876321  122    233444444444322           2334568999999999999


Q ss_pred             HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          527 RAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       527 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||++.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  227 (275)
T PRK13639        150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD  227 (275)
T ss_pred             HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999999885 47999999999999874 899999999999999999988653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-40  Score=370.15  Aligned_cols=219  Identities=32%  Similarity=0.484  Sum_probs=186.1

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCC--CCH
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQL  447 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~  447 (1253)
                      +.++++||+++|++  ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|+++.+  .+.
T Consensus         6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (259)
T PRK14260          6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI   83 (259)
T ss_pred             ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence            36899999999974  3499999999999999999999999999999999999985     48999999999854  445


Q ss_pred             HHHhcccEEEeccCccCcccHHHHHhcCCCC------CC-HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHH
Q 000851          448 KWLREQMGLVSQEPALFATSIANNILLGKED------AS-MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK  520 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~------~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~  520 (1253)
                      ..++++|+||+|++.+|+.|++||+.++...      .. .+.+.++++..++.+++..       .....+..||||||
T Consensus        84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~  156 (259)
T PRK14260         84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ  156 (259)
T ss_pred             HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence            6778899999999999999999999875311      11 1234555666665443322       23456678999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEe-----CCEEEEee
Q 000851          521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK-----NGQVVESG  594 (1253)
Q Consensus       521 qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~-----~G~i~~~g  594 (1253)
                      ||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+     +|++++.|
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~  236 (259)
T PRK14260        157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG  236 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence            9999999999999999999999999999999999999998778999999999999876 89999998     59999999


Q ss_pred             Ccchhhhc
Q 000851          595 THVDLISK  602 (1253)
Q Consensus       595 ~~~~l~~~  602 (1253)
                      +++++.+.
T Consensus       237 ~~~~~~~~  244 (259)
T PRK14260        237 VTTQIFSN  244 (259)
T ss_pred             CHHHHhcC
Confidence            99998653

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-40  Score=369.18  Aligned_cols=222  Identities=24%  Similarity=0.455  Sum_probs=184.8

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHH-hccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i  454 (1253)
                      -++++|++++|++  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   82 (255)
T PRK11300          5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV   82 (255)
T ss_pred             eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence            4899999999974  349999999999999999999999999999999999999999999999999987765544 4569


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          455 GLVSQEPALFAT-SIANNILLGKEDASM----------DRV--IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~~~~----------~~~--~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      +|++|++.+|.. |++||+.++......          ...  ........+.++++.+  |++......+.+|||||||
T Consensus        83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~q  160 (255)
T PRK11300         83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQR  160 (255)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHH
Confidence            999999999986 999999986321000          000  0000111223444454  5666667778899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcch
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVD  598 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~  598 (1253)
                      |++||||++.+|++|||||||++||+.+.+.+.+.|.++.+  ++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus       161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  240 (255)
T PRK11300        161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE  240 (255)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence            99999999999999999999999999999999999998753  7899999999999866 89999999999999999888


Q ss_pred             hhh
Q 000851          599 LIS  601 (1253)
Q Consensus       599 l~~  601 (1253)
                      +..
T Consensus       241 ~~~  243 (255)
T PRK11300        241 IRN  243 (255)
T ss_pred             Hhh
Confidence            754

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-40  Score=340.71  Aligned_cols=221  Identities=27%  Similarity=0.454  Sum_probs=189.3

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHH-Hhccc
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW-LREQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i  454 (1253)
                      -++++|++-.|+..  .+|++|||++++||+++|+|+||+||||+++.|+|+.+|.+|+|.++|+|+...+++. .|..|
T Consensus         3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi   80 (237)
T COG0410           3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI   80 (237)
T ss_pred             ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence            37899999999753  4999999999999999999999999999999999999999999999999999987665 57789


Q ss_pred             EEEeccCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          455 GLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       455 ~~v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      +||||.-.+|.. ||+||+.+|......++.    .....++..+-+| -+......++.+|||||||.+||||||+.+|
T Consensus        81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~P  155 (237)
T COG0410          81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRP  155 (237)
T ss_pred             EeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence            999999999977 999999987432221110    1111223334455 3556677888999999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          534 KILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      ++|+|||||.+|-|.-.+.|.+.|+++++  +.|+++|-++..... -|||.+||++|+|+.+|+.+||.++.
T Consensus       156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~  228 (237)
T COG0410         156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP  228 (237)
T ss_pred             CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence            99999999999999999999999999974  569999999999875 48999999999999999999998764

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=2.6e-40  Score=360.70  Aligned_cols=205  Identities=35%  Similarity=0.558  Sum_probs=170.8

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCC--CCHHHHhccc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWLREQM  454 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~i  454 (1253)
                      |+++||+++|+++  ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..  .+...+++.|
T Consensus         1 l~~~~l~~~~~~~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   78 (213)
T cd03262           1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV   78 (213)
T ss_pred             CEEEEEEEEECCe--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence            4789999999753  49999999999999999999999999999999999999999999999999853  3455678899


Q ss_pred             EEEeccCccCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000851          455 GLVSQEPALFA-TSIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL  530 (1253)
Q Consensus       455 ~~v~Q~~~lf~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~  530 (1253)
                      +|++|++.+|. .|++||+.++..   ....++..+.     +.+.++.+  |++........+||||||||++||||++
T Consensus        79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~  151 (213)
T cd03262          79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA  151 (213)
T ss_pred             eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence            99999999986 599999987532   1222221111     12233333  4444445556789999999999999999


Q ss_pred             cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000851          531 RNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQV  590 (1253)
Q Consensus       531 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i  590 (1253)
                      .+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus       152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999999999999999999999885 47899999999999965 899999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=5.5e-40  Score=367.29  Aligned_cols=228  Identities=27%  Similarity=0.437  Sum_probs=186.7

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC----CccEEEECCccCCCCCHHHH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP----ISGTVLIDGYDIRTLNLRSL 1080 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p----~~G~I~idG~di~~i~~~~l 1080 (1253)
                      .|+++||+++| .   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|    ++|+|.+||.+++..  +..
T Consensus         4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~   77 (254)
T PRK10418          4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR   77 (254)
T ss_pred             EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence            48999999999 2   3599999999999999999999999999999999999999    999999999998632  223


Q ss_pred             hcceEEEccCCC-ccc--ccHHHHhccC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1081 RRKIGLVQQEPA-LFS--TTIYENIKYG----NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1081 R~~i~~V~Qdp~-Lf~--gTIreNl~~g----~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      ++.++||||++. .|.  .|+.+|+...    .....++++.++++..++.++        ++.++....+||||||||+
T Consensus        78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv  149 (254)
T PRK10418         78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM  149 (254)
T ss_pred             cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence            568999999985 343  5888886431    112234556666766665432        1234555678999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl 1230 (1253)
                      +|||||+++|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  229 (254)
T PRK10418        150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF  229 (254)
T ss_pred             HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            999999999999999999999999999999999998743  7899999999999865 9999999999999999999998


Q ss_pred             hcccc-hHHHHHHHhhc
Q 000851         1231 RKENG-IYKQLIRLQQD 1246 (1253)
Q Consensus      1231 ~~~~g-~y~~L~~~~~~ 1246 (1253)
                      +.... .++.++..+..
T Consensus       230 ~~~~~~~~~~~~~~~~~  246 (254)
T PRK10418        230 NAPKHAVTRSLVSAHLA  246 (254)
T ss_pred             hCCCCHHHHHHHHhhhh
Confidence            75444 45556665543

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.6e-40  Score=361.40  Aligned_cols=210  Identities=30%  Similarity=0.528  Sum_probs=181.5

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++||+++|++.    ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..  ++.++|
T Consensus         2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~~   75 (232)
T PRK10771          2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSM   75 (232)
T ss_pred             eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEEE
Confidence            6899999999732    2499999999999999999999999999999999999999999999998765442  567999


Q ss_pred             EeccCccCcc-cHHHHHhcCC-CC-----CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFAT-SIANNILLGK-ED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~-~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      ++|++.+|.+ |+.||+.++. +.     ..++++.++++..++.+.+.+.|           ..||||||||++||||+
T Consensus        76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral  144 (232)
T PRK10771         76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL  144 (232)
T ss_pred             EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence            9999999975 9999998753 11     11345666777777666655554           48999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      +++|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus       145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~  221 (232)
T PRK10771        145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK  221 (232)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence            999999999999999999999999999998743  7899999999999866 8999999999999999998887643

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-40  Score=383.58  Aligned_cols=211  Identities=27%  Similarity=0.429  Sum_probs=182.0

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCC----CHHHHhc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----QLKWLRE  452 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r~  452 (1253)
                      |++ |++++|++.   .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.    +....++
T Consensus         2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   76 (352)
T PRK11144          2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR   76 (352)
T ss_pred             eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence            567 899999642   33 89999999999999999999999999999999999999999999998653    2345678


Q ss_pred             ccEEEeccCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000851          453 QMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       453 ~i~~v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~  531 (1253)
                      +|+||+|++.+|+. |++||+.++......+++.+.++..++.++..           ....+||||||||++|||||+.
T Consensus        77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~~  145 (352)
T PRK11144         77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALLT  145 (352)
T ss_pred             CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHHc
Confidence            89999999999964 99999999865444455666666665544443           3446899999999999999999


Q ss_pred             CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhcC
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       532 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      +|++||||||||+||+.+.+.+.+.|+++.+  ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus       146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p  220 (352)
T PRK11144        146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS  220 (352)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence            9999999999999999999999999998753  7899999999998865 8999999999999999999998764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=8.3e-40  Score=367.80  Aligned_cols=222  Identities=27%  Similarity=0.430  Sum_probs=183.0

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCC---CcEEEECCeeCCCC-----CH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT---SGKILLDGHDLKSL-----QL  447 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~-----~~  447 (1253)
                      -|+++||+++|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|+   +|+|.++|.++...     +.
T Consensus         4 ~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~   81 (262)
T PRK09984          4 IIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI   81 (262)
T ss_pred             EEEEeeEEEEeCCe--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence            48999999999743  4999999999999999999999999999999999999986   49999999998643     23


Q ss_pred             HHHhcccEEEeccCccCcc-cHHHHHhcCCCCC--------------CHHHHHHHHHHhCcHHHHhcCCCCccccccCCC
Q 000851          448 KWLREQMGLVSQEPALFAT-SIANNILLGKEDA--------------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG  512 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g  512 (1253)
                      ..+++.++|++|++.+|.. |++||+.++....              ..+++.++++..++.+           ......
T Consensus        82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~  150 (262)
T PRK09984         82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-----------FAHQRV  150 (262)
T ss_pred             HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-----------HHhCCc
Confidence            5667889999999998875 9999998764211              0123334444444333           334455


Q ss_pred             CCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-hcCEEEEEeCCE
Q 000851          513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVR-DVDTIMVLKNGQ  589 (1253)
Q Consensus       513 ~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~  589 (1253)
                      .+||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++.  +|+|+|++||+++.+. .||+|++|++|+
T Consensus       151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~  230 (262)
T PRK09984        151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH  230 (262)
T ss_pred             cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence            6899999999999999999999999999999999999999999999985  3799999999999875 489999999999


Q ss_pred             EEEeeCcchhhhcCchHHHHHHh
Q 000851          590 VVESGTHVDLISKGGEYAALVNL  612 (1253)
Q Consensus       590 i~~~g~~~~l~~~~~~y~~~~~~  612 (1253)
                      +++.|+++++ . .....+++..
T Consensus       231 i~~~g~~~~~-~-~~~~~~~~~~  251 (262)
T PRK09984        231 VFYDGSSQQF-D-NERFDHLYRS  251 (262)
T ss_pred             EEEeCCHHHh-c-cHHHHHHHhh
Confidence            9999999886 2 2344455443

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=8e-40  Score=368.29  Aligned_cols=225  Identities=26%  Similarity=0.443  Sum_probs=185.5

Q ss_pred             cEEEEEEEEECCCC-------CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHH
Q 000851          376 QIEFSEVCFAYPSR-------PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~-------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~  448 (1253)
                      -|+++||+++|+..       ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~   83 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS   83 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence            48999999999631       13499999999999999999999999999999999999999999999999998765556


Q ss_pred             HHhcccEEEeccCc--cCcc-cHHHHHhcCCC---CCC----HHHHHHHHHHhCcH-HHHhcCCCCccccccCCCCCCCh
Q 000851          449 WLREQMGLVSQEPA--LFAT-SIANNILLGKE---DAS----MDRVIEAAKAANAH-SFVEGLPDGYQTQVGEGGTQLSG  517 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~--lf~~-ti~~ni~~g~~---~~~----~~~~~~~~~~~~~~-~~i~~l~~g~~t~~g~~g~~LSg  517 (1253)
                      ..++.|+||+|++.  +++. |+.+|+.++..   ...    .+++.++++..++. +..           .....+|||
T Consensus        84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~  152 (267)
T PRK15112         84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-----------SYYPHMLAP  152 (267)
T ss_pred             hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-----------hcCchhcCH
Confidence            66778999999985  4443 89999875321   111    23445555555552 222           223458999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEee
Q 000851          518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       518 Gq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g  594 (1253)
                      |||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.  .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~  232 (267)
T PRK15112        153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG  232 (267)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999999999999985  37899999999999986 8999999999999999


Q ss_pred             CcchhhhcC--chHHHHHH
Q 000851          595 THVDLISKG--GEYAALVN  611 (1253)
Q Consensus       595 ~~~~l~~~~--~~y~~~~~  611 (1253)
                      +++++....  ..++.++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~  251 (267)
T PRK15112        233 STADVLASPLHELTKRLIA  251 (267)
T ss_pred             CHHHHhcCCCCHHHHHHHH
Confidence            999987653  34555654

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=2.7e-40  Score=363.54  Aligned_cols=214  Identities=26%  Similarity=0.419  Sum_probs=171.0

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCccEEEECCccCCCCCHHHHh
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD---PISGTVLIDGYDIRTLNLRSLR 1081 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~---p~~G~I~idG~di~~i~~~~lR 1081 (1253)
                      ++|+||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++   |++|+|.+||.++.   ...+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~   80 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ   80 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence            67999999998532 3579999999999999999999999999999999999999   99999999999875   35678


Q ss_pred             cceEEEccCCCcccc-cHHHHhccCCCCCCHHHHHHHHHHhcHHH-HHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000851         1082 RKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHG-FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 1159 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~g-TIreNl~~g~~~~~d~ei~~al~~a~l~~-~I~~lp~gldt~vge~G~~LSgGQkQrlaLARAL 1159 (1253)
                      ++++|+||++.+|++ |++||+.++..........++.+....++ .+..+  +++.........||||||||++|||||
T Consensus        81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral  158 (226)
T cd03234          81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL  158 (226)
T ss_pred             ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence            999999999999987 99999986421110000000111111111 22221  233333345578999999999999999


Q ss_pred             ccCCCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCc-hhh-hccCEEEEEeCCEEEEec
Q 000851         1160 LKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRL-STI-RNADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1160 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl-~ti-~~~D~I~Vl~~G~ive~G 1224 (1253)
                      +++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus       159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999999999999999999999999875 478999999998 465 559999999999999876

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=3.3e-40  Score=364.07  Aligned_cols=211  Identities=33%  Similarity=0.541  Sum_probs=181.5

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++|+|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+..  ++.++|
T Consensus         1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~~   76 (232)
T cd03300           1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVNT   76 (232)
T ss_pred             CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceEE
Confidence            4789999999753  499999999999999999999999999999999999999999999999999766543  578999


Q ss_pred             EeccCccCcc-cHHHHHhcCCCC--CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      |+|++.+|.+ |++||+.++...  .+    .+++.++++..++.+++...           ..+||||||||++||||+
T Consensus        77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral  145 (232)
T cd03300          77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRK-----------PSQLSGGQQQRVAIARAL  145 (232)
T ss_pred             EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence            9999999975 999999875311  11    23445555555555554444           458999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      +.+|+++||||||++||+.+.+.+.+.|+++.+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~  221 (232)
T cd03300         146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE  221 (232)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence            999999999999999999999999999998864  8999999999999865 899999999999999998887653

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=3.4e-40  Score=358.69  Aligned_cols=205  Identities=25%  Similarity=0.509  Sum_probs=170.5

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++|+++.|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..    ..++.++|
T Consensus         1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~   74 (210)
T cd03269           1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY   74 (210)
T ss_pred             CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence            478999999974  349999999999999999999999999999999999999999999999988753    45778999


Q ss_pred             EeccCccCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000851          457 VSQEPALFAT-SIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNP  533 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p  533 (1253)
                      ++|++.++.. |++||+.++...  ....+..     ..+.++++.+  |++........+||||||||++||||++.+|
T Consensus        75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p  147 (210)
T cd03269          75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDP  147 (210)
T ss_pred             eccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence            9999999875 999999874311  1111111     1122333333  4444445566789999999999999999999


Q ss_pred             CEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEee
Q 000851          534 KILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       534 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g  594 (1253)
                      +++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            9999999999999999999999999875 47899999999999865 8999999999998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-40  Score=368.73  Aligned_cols=218  Identities=32%  Similarity=0.535  Sum_probs=182.6

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCC--CCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~~  448 (1253)
                      .++++||+++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  .+..
T Consensus         4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~   81 (258)
T PRK14241          4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV   81 (258)
T ss_pred             cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence            48999999999753  499999999999999999999999999999999999974     79999999999853  3455


Q ss_pred             HHhcccEEEeccCccCcc-cHHHHHhcCCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHH
Q 000851          449 WLREQMGLVSQEPALFAT-SIANNILLGKED---ASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK  520 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~  520 (1253)
                      .+|+.++|++|++.+|.. |++||+.++...   ...    +++.++++..++.+.+       .......+.+||||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~  154 (258)
T PRK14241         82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQ  154 (258)
T ss_pred             HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence            678899999999999874 999999875311   111    2333444444443222       2234556678999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhh-hcCEEEEEe------CCEEEEe
Q 000851          521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLK------NGQVVES  593 (1253)
Q Consensus       521 qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~vl~------~G~i~~~  593 (1253)
                      ||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+      +|+|++.
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~  234 (258)
T PRK14241        155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI  234 (258)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence            999999999999999999999999999999999999999877899999999999986 489999997      8999999


Q ss_pred             eCcchhhhc
Q 000851          594 GTHVDLISK  602 (1253)
Q Consensus       594 g~~~~l~~~  602 (1253)
                      |+++++...
T Consensus       235 ~~~~~~~~~  243 (258)
T PRK14241        235 DDTEKIFSN  243 (258)
T ss_pred             CCHHHHHhC
Confidence            999988653

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.3e-40  Score=362.37  Aligned_cols=211  Identities=34%  Similarity=0.526  Sum_probs=179.7

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      |+++|++++|+++  .+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++|
T Consensus         1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~   76 (237)
T TIGR00968         1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF   76 (237)
T ss_pred             CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence            4789999999753  49999999999999999999999999999999999999999999999999876543  4678999


Q ss_pred             EeccCccCcc-cHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFAT-SIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      |+|++.+|++ |++||+.++.+..  +    .+++.++++..++.++           ......+||||||||++||||+
T Consensus        77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qrl~laral  145 (237)
T TIGR00968        77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL-----------GDRYPNQLSGGQRQRVALARAL  145 (237)
T ss_pred             EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCCHHHHHHHHHHHHH
Confidence            9999999975 9999998764311  1    1233334444443333           3344568999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      +++|+++||||||++||+++++.+.+.|.++.+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~  221 (237)
T TIGR00968       146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH  221 (237)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence            999999999999999999999999999998754  7999999999999866 899999999999999999988653

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.6e-40  Score=370.44  Aligned_cols=219  Identities=28%  Similarity=0.488  Sum_probs=184.2

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCC--CCH
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKS--LQL  447 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~  447 (1253)
                      ..|+++|++++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++.+  .+.
T Consensus        38 ~~l~i~~l~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~  115 (285)
T PRK14254         38 TVIEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP  115 (285)
T ss_pred             ceEEEEEEEEEECCE--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence            358999999999743  49999999999999999999999999999999999997     689999999999864  345


Q ss_pred             HHHhcccEEEeccCccCcccHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHH
Q 000851          448 KWLREQMGLVSQEPALFATSIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQR  522 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qr  522 (1253)
                      ..+++.++||+|++.+|..|++||+.++...     ...+++.++++..++.+.+       ......++.+||||||||
T Consensus       116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LSgGe~qr  188 (285)
T PRK14254        116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLDLSGGQQQR  188 (285)
T ss_pred             HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-------HHHHhCCcccCCHHHHHH
Confidence            5678899999999999988999999875311     1123445555555443222       123456677999999999


Q ss_pred             HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEE-EEeCCEEEEeeCcchhh
Q 000851          523 IAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIM-VLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       523 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~-vl~~G~i~~~g~~~~l~  600 (1253)
                      ++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++.
T Consensus       189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~  268 (285)
T PRK14254        189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF  268 (285)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence            99999999999999999999999999999999999998777899999999999876 89975 57999999999988876


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      .+
T Consensus       269 ~~  270 (285)
T PRK14254        269 EN  270 (285)
T ss_pred             hC
Confidence            53

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.4e-40  Score=338.02  Aligned_cols=220  Identities=30%  Similarity=0.475  Sum_probs=189.1

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-Hhcc
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS-LRRK 1083 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~-lR~~ 1083 (1253)
                      -++++||+..|.   ...+|+||||++++||+++++||||+||||++++|+|+.+|.+|+|.++|.||...+++. .|..
T Consensus         3 mL~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G   79 (237)
T COG0410           3 MLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG   79 (237)
T ss_pred             ceeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence            378999999996   356999999999999999999999999999999999999999999999999999998875 6889


Q ss_pred             eEEEccCCCccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000851         1084 IGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162 (1253)
Q Consensus      1084 i~~V~Qdp~Lf~-gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~ 1162 (1253)
                      |+||||...+|+ -||.|||..|.-...+++-    ....+++.-+-+| -|......++.+|||||+|-+||||||+.+
T Consensus        80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~  154 (237)
T COG0410          80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR  154 (237)
T ss_pred             eEeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence            999999999997 5999999987422222111    1111223333445 355566677889999999999999999999


Q ss_pred             CCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1163 PSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1163 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      |++|+|||||.+|-|.--+.|.++|++..+  +.||+.|-++...... +||.+||++|+|+..|+.+||.++
T Consensus       155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~  227 (237)
T COG0410         155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD  227 (237)
T ss_pred             CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence            999999999999999999999999999874  6699999999998754 999999999999999999999984

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.1e-40  Score=372.19  Aligned_cols=219  Identities=28%  Similarity=0.458  Sum_probs=183.3

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCCC--CH
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSL--QL  447 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~~  447 (1253)
                      ..|+++||+++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.+||.++...  +.
T Consensus        38 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~  115 (286)
T PRK14275         38 PHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE  115 (286)
T ss_pred             eEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence            358999999999743  49999999999999999999999999999999999864     4999999999998643  33


Q ss_pred             HHHhcccEEEeccCccCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHH
Q 000851          448 KWLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK  520 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~  520 (1253)
                      ..+|++|+||+|++.+|+.|++||+.++...  . +    .+++.++++..++.+.+       .......+..||||||
T Consensus       116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~  188 (286)
T PRK14275        116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQQ  188 (286)
T ss_pred             HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHHH
Confidence            4578899999999999988999999986321  1 1    12233444444432211       1233456678999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchh
Q 000851          521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       521 qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      ||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~  268 (286)
T PRK14275        189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL  268 (286)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998777899999999999865 899999999999999999988


Q ss_pred             hhc
Q 000851          600 ISK  602 (1253)
Q Consensus       600 ~~~  602 (1253)
                      ..+
T Consensus       269 ~~~  271 (286)
T PRK14275        269 FTN  271 (286)
T ss_pred             HhC
Confidence            764

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-40  Score=366.97  Aligned_cols=202  Identities=30%  Similarity=0.460  Sum_probs=171.4

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...     ++.++
T Consensus         2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~   73 (255)
T PRK11248          2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG   73 (255)
T ss_pred             EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence            789999999963   4699999999999999999999999999999999999999999999999988642     34699


Q ss_pred             EEccCCCccc-ccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFS-TTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      |++|++.+|+ .|++||+.++..  ..+.    +++.++++..++.+.           ......+||||||||++||||
T Consensus        74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrl~lara  142 (255)
T PRK11248         74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA-----------EKRYIWQLSGGQRQRVGIARA  142 (255)
T ss_pred             EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHH
Confidence            9999999887 699999986421  1121    234445555544333           233456899999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEe--CCEEEEecCh
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQ--QGKVAEIGSH 1226 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~--~G~ive~Gt~ 1226 (1253)
                      |+++|++|||||||++||+.+.+.+.+.|++..  +++|+|+|||+++.+.. ||+|++|+  +|++++.++.
T Consensus       143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            999999999999999999999999999999863  38999999999999865 99999998  5999998764

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-39  Score=366.55  Aligned_cols=216  Identities=25%  Similarity=0.410  Sum_probs=182.9

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCC--------CcEEEECCeeCCCCCHH
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT--------SGKILLDGHDLKSLQLK  448 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~--------~G~i~~~g~~~~~~~~~  448 (1253)
                      |+++|++++|+++  .+|+|+||+|++||+++|+||||||||||+++|+|+++|+        +|+|.++|.++...+..
T Consensus         2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~   79 (272)
T PRK13547          2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP   79 (272)
T ss_pred             eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence            6899999999743  4999999999999999999999999999999999999998        99999999999887777


Q ss_pred             HHhcccEEEeccCc-cCcccHHHHHhcCCCCC-C-----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPA-LFATSIANNILLGKEDA-S-----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~-lf~~ti~~ni~~g~~~~-~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+++.++||+|++. +|..|++||+.++.... .     .++..     ..+.+.++.+  |+++..+....+|||||||
T Consensus        80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q  152 (272)
T PRK13547         80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG-----EIAWQALALA--GATALVGRDVTTLSGGELA  152 (272)
T ss_pred             HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHH-----HHHHHHHHHc--CcHhhhcCCcccCCHHHHH
Confidence            88888999999986 56789999998863211 0     01100     1112233333  5555666777899999999


Q ss_pred             HHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-hcCEEEEEeCCE
Q 000851          522 RIAIARAVL---------RNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVR-DVDTIMVLKNGQ  589 (1253)
Q Consensus       522 riaiARal~---------~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~  589 (1253)
                      |++|||||+         .+|++|||||||++||+.+.+.+.+.|+++.+  ++|+|+|||+++.+. .||++++|++|+
T Consensus       153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~  232 (272)
T PRK13547        153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA  232 (272)
T ss_pred             HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence            999999999         59999999999999999999999999998753  789999999999986 489999999999


Q ss_pred             EEEeeCcchhhh
Q 000851          590 VVESGTHVDLIS  601 (1253)
Q Consensus       590 i~~~g~~~~l~~  601 (1253)
                      +++.|++++++.
T Consensus       233 i~~~g~~~~~~~  244 (272)
T PRK13547        233 IVAHGAPADVLT  244 (272)
T ss_pred             EEEecCHHHHcC
Confidence            999999988865

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=6.5e-40  Score=365.13  Aligned_cols=210  Identities=26%  Similarity=0.398  Sum_probs=173.4

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHcc--CCCCCcEEEECCeeCCCCCHHHH-hcc
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL--YEPTSGKILLDGHDLKSLQLKWL-REQ  453 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~~  453 (1253)
                      |+++|++++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+.... +..
T Consensus         1 l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   78 (243)
T TIGR01978         1 LKIKDLHVSVEDK--EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG   78 (243)
T ss_pred             CeEeeEEEEECCE--EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence            4789999999743  499999999999999999999999999999999999  47999999999999987776554 456


Q ss_pred             cEEEeccCccCcc-cHHHHHhcCCCC---------CCH----HHHHHHHHHhCcHHHHhcCCCCccc-cccCCCC-CCCh
Q 000851          454 MGLVSQEPALFAT-SIANNILLGKED---------ASM----DRVIEAAKAANAHSFVEGLPDGYQT-QVGEGGT-QLSG  517 (1253)
Q Consensus       454 i~~v~Q~~~lf~~-ti~~ni~~g~~~---------~~~----~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~~g~-~LSg  517 (1253)
                      ++||+|++.+|++ |++||+.+....         .+.    +++.++++..           |++. ....... +|||
T Consensus        79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LS~  147 (243)
T TIGR01978        79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALL-----------GMDEEFLNRSVNEGFSG  147 (243)
T ss_pred             eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHc-----------CCchhhcccccccCcCH
Confidence            9999999999876 999999764211         011    1222233322           2221 1223333 5999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEEEee
Q 000851          518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD--VDTIMVLKNGQVVESG  594 (1253)
Q Consensus       518 Gq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~--~d~i~vl~~G~i~~~g  594 (1253)
                      |||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..  ||++++|++|++++.|
T Consensus       148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g  227 (243)
T TIGR01978       148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG  227 (243)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence            99999999999999999999999999999999999999999885 47899999999999976  7999999999999999


Q ss_pred             Ccchh
Q 000851          595 THVDL  599 (1253)
Q Consensus       595 ~~~~l  599 (1253)
                      +++++
T Consensus       228 ~~~~~  232 (243)
T TIGR01978       228 DVELA  232 (243)
T ss_pred             CHHHh
Confidence            88754

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-40  Score=368.01  Aligned_cols=220  Identities=29%  Similarity=0.458  Sum_probs=186.9

Q ss_pred             CCcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCC----C
Q 000851          374 AGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLK----S  444 (1253)
Q Consensus       374 ~~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~----~  444 (1253)
                      .+.|+++|++++|++.  ++|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++.    .
T Consensus        14 ~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~   91 (265)
T PRK14252         14 QQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE   91 (265)
T ss_pred             CceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence            4579999999999743  499999999999999999999999999999999999975     7999999998874    2


Q ss_pred             CCHHHHhcccEEEeccCccCcccHHHHHhcCCC--CC-----CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCCh
Q 000851          445 LQLKWLREQMGLVSQEPALFATSIANNILLGKE--DA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG  517 (1253)
Q Consensus       445 ~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg  517 (1253)
                      .+...+++.|+|++|++.+|..|++||+.++..  ..     ..+++.++++.+++.+       ++.+..+....+|||
T Consensus        92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~  164 (265)
T PRK14252         92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLSG  164 (265)
T ss_pred             cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCCH
Confidence            344567889999999999998999999987631  11     1234455555554432       223445666789999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCc
Q 000851          518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTH  596 (1253)
Q Consensus       518 Gq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~  596 (1253)
                      |||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus       165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~  244 (265)
T PRK14252        165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT  244 (265)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999998778999999999999865 899999999999999999


Q ss_pred             chhhhc
Q 000851          597 VDLISK  602 (1253)
Q Consensus       597 ~~l~~~  602 (1253)
                      +++...
T Consensus       245 ~~~~~~  250 (265)
T PRK14252        245 DTIFIK  250 (265)
T ss_pred             HHHHhC
Confidence            888643

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=376.70  Aligned_cols=224  Identities=23%  Similarity=0.368  Sum_probs=182.5

Q ss_pred             EEEEEEEEECCCC--CCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC----CCCcEEEECCeeCCCCCHHHH
Q 000851          377 IEFSEVCFAYPSR--PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE----PTSGKILLDGHDLKSLQLKWL  450 (1253)
Q Consensus       377 i~~~~v~f~y~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~~~~~~~~~~  450 (1253)
                      ++++|++++|+..  ...+|+|+||+|++||+++|+|+||||||||+++|+|+.+    |++|+|.++|+++...+.+.+
T Consensus         4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (330)
T PRK15093          4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER   83 (330)
T ss_pred             EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            7899999999632  2349999999999999999999999999999999999986    589999999999988776554


Q ss_pred             h----cccEEEeccCc--cCc-ccHHHHHhcCCC---C-----CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCC
Q 000851          451 R----EQMGLVSQEPA--LFA-TSIANNILLGKE---D-----AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEG  511 (1253)
Q Consensus       451 r----~~i~~v~Q~~~--lf~-~ti~~ni~~g~~---~-----~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~  511 (1253)
                      +    +.|+||+|+|.  ++. .||.+|+.....   .     ..    .+++.+.++..++.+.-        ......
T Consensus        84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~~  155 (330)
T PRK15093         84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRSF  155 (330)
T ss_pred             HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhCC
Confidence            3    47999999996  333 489999864210   0     01    12344455555443210        123445


Q ss_pred             CCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCC
Q 000851          512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNG  588 (1253)
Q Consensus       512 g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G  588 (1253)
                      +.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+  |.|+|+|||+++.+.. ||+|++|++|
T Consensus       156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G  235 (330)
T PRK15093        156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG  235 (330)
T ss_pred             chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence            578999999999999999999999999999999999999999999999864  7899999999999965 8999999999


Q ss_pred             EEEEeeCcchhhhcC-chHHH
Q 000851          589 QVVESGTHVDLISKG-GEYAA  608 (1253)
Q Consensus       589 ~i~~~g~~~~l~~~~-~~y~~  608 (1253)
                      +|++.|+.+++.... ..|.+
T Consensus       236 ~ive~g~~~~i~~~p~~~y~~  256 (330)
T PRK15093        236 QTVETAPSKELVTTPHHPYTQ  256 (330)
T ss_pred             EEEEECCHHHHHhCCCCHHHH
Confidence            999999999987753 45654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1e-39  Score=367.46  Aligned_cols=232  Identities=28%  Similarity=0.449  Sum_probs=188.4

Q ss_pred             EEEEeEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCH--
Q 000851         1006 IELRNVSFKYPVR------PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL-- 1077 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~-- 1077 (1253)
                      |+++||+++|+..      .++++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++.  
T Consensus         4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~   83 (268)
T PRK10419          4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ   83 (268)
T ss_pred             EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence            8899999999731      13579999999999999999999999999999999999999999999999999987765  


Q ss_pred             -HHHhcceEEEccCCC--cc-cccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChhHHHH
Q 000851         1078 -RSLRRKIGLVQQEPA--LF-STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQS-HVGDRGVQLSGGQKQR 1152 (1253)
Q Consensus      1078 -~~lR~~i~~V~Qdp~--Lf-~gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSgGQkQr 1152 (1253)
                       ..+|+.++|++|++.  ++ ..|+++|+.+......  .+........+.+.++.+  |+++ ..+.....||||||||
T Consensus        84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~qr  159 (268)
T PRK10419         84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQR  159 (268)
T ss_pred             HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHHH
Confidence             347889999999983  44 4699999864211000  000111122334455544  5653 4556678899999999


Q ss_pred             HHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 000851         1153 VAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229 (1253)
Q Consensus      1153 laLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eL 1229 (1253)
                      ++|||||+.+|++|||||||++||+.+.+.+.+.|++..+  ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  239 (268)
T PRK10419        160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK  239 (268)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence            9999999999999999999999999999999999998753  7899999999999975 999999999999999999999


Q ss_pred             hhcccchHHHHHH
Q 000851         1230 LRKENGIYKQLIR 1242 (1253)
Q Consensus      1230 l~~~~g~y~~L~~ 1242 (1253)
                      .. ..+.|..-+.
T Consensus       240 ~~-~~~~~~~~~~  251 (268)
T PRK10419        240 LT-FSSPAGRVLQ  251 (268)
T ss_pred             cC-CCCHHHHHHH
Confidence            86 4555544443

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.7e-40  Score=382.15  Aligned_cols=212  Identities=31%  Similarity=0.500  Sum_probs=179.0

Q ss_pred             eEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCC----HHHHhcceE
Q 000851         1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN----LRSLRRKIG 1085 (1253)
Q Consensus      1010 ~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~----~~~lR~~i~ 1085 (1253)
                      |++++|++   .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+    ...+|++++
T Consensus         4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~   78 (354)
T TIGR02142         4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG   78 (354)
T ss_pred             EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence            89999963   23 4 999999999999999999999999999999999999999999999986542    345688999


Q ss_pred             EEccCCCcccc-cHHHHhccCCCCCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000851         1086 LVQQEPALFST-TIYENIKYGNEDASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160 (1253)
Q Consensus      1086 ~V~Qdp~Lf~g-TIreNl~~g~~~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALl 1160 (1253)
                      ||+|++.+|+. |++||+.++......    +.+.+.++..++.+           .......+||||||||++|||||+
T Consensus        79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGqkqRvalAraL~  147 (354)
T TIGR02142        79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-----------LLGRLPGRLSGGEKQRVAIGRALL  147 (354)
T ss_pred             EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHH
Confidence            99999999975 999999986432221    22444444444433           344445689999999999999999


Q ss_pred             cCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhcccchH
Q 000851         1161 KNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIY 1237 (1253)
Q Consensus      1161 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~~~g~y 1237 (1253)
                      ++|++|||||||++||+.+.+.+.+.|++..+  ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...++..|
T Consensus       148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~  227 (354)
T TIGR02142       148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW  227 (354)
T ss_pred             cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence            99999999999999999999999999998753  7899999999999865 99999999999999999999987655444

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=9.1e-40  Score=369.47  Aligned_cols=214  Identities=30%  Similarity=0.535  Sum_probs=185.2

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccE
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~  455 (1253)
                      .++++|++++|+. ...+|+||||+|++||++|++||||||||||+++|+|+..|++|+|.++|.+...- ....|++||
T Consensus         4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig   81 (293)
T COG1131           4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG   81 (293)
T ss_pred             eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence            4788999999973 13499999999999999999999999999999999999999999999999998755 677888999


Q ss_pred             EEeccCccCcc-cHHHHHhcC-----CCC-CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000851          456 LVSQEPALFAT-SIANNILLG-----KED-ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       456 ~v~Q~~~lf~~-ti~~ni~~g-----~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARa  528 (1253)
                      ||||+|.+++. |++||+.|.     .+. ...+++.+.++..++.+.-           ......||+|||||++||+|
T Consensus        82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a  150 (293)
T COG1131          82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA  150 (293)
T ss_pred             EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence            99999998876 999999873     221 2245666777666554311           33456899999999999999


Q ss_pred             hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMS-N-RTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       529 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |+.+|++|||||||++|||.+...+.+.|+++.+ + +|++++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus       151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~  227 (293)
T COG1131         151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK  227 (293)
T ss_pred             HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence            9999999999999999999999999999999865 4 799999999999987 899999999999999988886543

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.4e-40  Score=366.53  Aligned_cols=218  Identities=33%  Similarity=0.533  Sum_probs=181.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCC-----CcEEEECCeeCCC--CCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKS--LQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~~  448 (1253)
                      -++++||+|+|++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++.+  .+..
T Consensus         4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   81 (252)
T PRK14272          4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV   81 (252)
T ss_pred             EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence            3789999999974  34999999999999999999999999999999999999874     8999999999864  3445


Q ss_pred             HHhcccEEEeccCccCcc-cHHHHHhcCCCC--C-CHHHHHHH----HHHhCcHHHHhcCCCCccccccCCCCCCChHHH
Q 000851          449 WLREQMGLVSQEPALFAT-SIANNILLGKED--A-SMDRVIEA----AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK  520 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~--~-~~~~~~~~----~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~  520 (1253)
                      .+|+.|+|++|++.+|.. |+.||+.++...  . ..++..+.    ++..++.+.   +++    .....+.+||||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~----~~~~~~~~LS~G~~  154 (252)
T PRK14272         82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKD----RLKTPATGLSGGQQ  154 (252)
T ss_pred             HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhh----hhcCCcccCCHHHH
Confidence            678889999999999885 999999875321  1 22222222    222222221   112    22344678999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchh
Q 000851          521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDL  599 (1253)
Q Consensus       521 qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l  599 (1253)
                      ||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14272        155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL  234 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999886 899999999999999999998


Q ss_pred             hhc
Q 000851          600 ISK  602 (1253)
Q Consensus       600 ~~~  602 (1253)
                      +..
T Consensus       235 ~~~  237 (252)
T PRK14272        235 FTN  237 (252)
T ss_pred             HhC
Confidence            764

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-40  Score=331.59  Aligned_cols=213  Identities=31%  Similarity=0.538  Sum_probs=183.5

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      +++.+++.+|++  ...+++||||+++.||.+||.|+|||||||++++|..++.|++|+|+|||.|+.+ ++...|++||
T Consensus         2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG   78 (245)
T COG4555           2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG   78 (245)
T ss_pred             eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence            678999999984  3348999999999999999999999999999999999999999999999999877 5678899999


Q ss_pred             EEccCCCccc-ccHHHHhccCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000851         1086 LVQQEPALFS-TTIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~~--~~~d----~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARA 1158 (1253)
                      +++-+.-|+. -|.||||.|...  +.++    .++.+.-+..++.++.       |..+|    +||-|+|||++||||
T Consensus        79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARA  147 (245)
T COG4555          79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARA  147 (245)
T ss_pred             eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHH
Confidence            9997777876 599999988632  1222    2333334444444443       34444    599999999999999


Q ss_pred             hccCCCEEEEecccCCCChHHHHHHHHHHHHHcC-CceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1159 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      |+++|+|++||||||+||..+.+.+++-+.+... |++||.-||.++.++. ||+|+++.+|+++..|+++++.++
T Consensus       148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r  223 (245)
T COG4555         148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR  223 (245)
T ss_pred             HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence            9999999999999999999999999999999865 9999999999999985 999999999999999999999874

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.4e-40  Score=370.68  Aligned_cols=214  Identities=34%  Similarity=0.565  Sum_probs=187.7

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcce
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .++++||+.+|..  +..+|+||||+|++||.+|++||||||||||+++|+|+..|++|+|.++|.|...- ...+|+++
T Consensus         4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i   80 (293)
T COG1131           4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI   80 (293)
T ss_pred             eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence            4789999999962  34699999999999999999999999999999999999999999999999998765 77899999


Q ss_pred             EEEccCCCcccc-cHHHHhccCC-----C-CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHH
Q 000851         1085 GLVQQEPALFST-TIYENIKYGN-----E-DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~V~Qdp~Lf~g-TIreNl~~g~-----~-~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLAR 1157 (1253)
                      |||||+|.+++. |++|||.+..     + ...++.+.+.++..++.+.-           ......||+|||||++||+
T Consensus        81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~  149 (293)
T COG1131          81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL  149 (293)
T ss_pred             EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence            999999998864 9999998742     1 12245677778777775421           2334579999999999999


Q ss_pred             HhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC-C-ceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhhc
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLME-G-RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1158 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~-~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~eLl~~ 1232 (1253)
                      ||+.+|++|||||||++||+.+...+.+.|+++.+ + +||++.||.++.+.. ||+|++|++|+++..|+++++.+.
T Consensus       150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~  227 (293)
T COG1131         150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK  227 (293)
T ss_pred             HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence            99999999999999999999999999999999865 5 799999999999987 999999999999999999998763

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-39  Score=365.90  Aligned_cols=218  Identities=30%  Similarity=0.458  Sum_probs=185.1

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCC--CCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKS--LQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~~  448 (1253)
                      -|+++|++++|++.  .+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  .+..
T Consensus        20 ~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~   97 (274)
T PRK14265         20 VFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV   97 (274)
T ss_pred             eEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence            69999999999743  499999999999999999999999999999999999863     69999999999864  3445


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCC-----CHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDA-----SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI  523 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qri  523 (1253)
                      .+|+.|+|++|++.+|+.|+.||+.++....     .++++.++++.+++.+++.       ......+.+||||||||+
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv  170 (274)
T PRK14265         98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQRL  170 (274)
T ss_pred             HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHHH
Confidence            6788999999999999889999998863211     1233444555555543332       234456678999999999


Q ss_pred             HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEe---------CCEEEEe
Q 000851          524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK---------NGQVVES  593 (1253)
Q Consensus       524 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~---------~G~i~~~  593 (1253)
                      +|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|+         +|++++.
T Consensus       171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~  250 (274)
T PRK14265        171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF  250 (274)
T ss_pred             HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence            9999999999999999999999999999999999998778999999999999865 89999998         8999999


Q ss_pred             eCcchhhhc
Q 000851          594 GTHVDLISK  602 (1253)
Q Consensus       594 g~~~~l~~~  602 (1253)
                      |+.+++...
T Consensus       251 g~~~~~~~~  259 (274)
T PRK14265        251 SPTEQMFGS  259 (274)
T ss_pred             CCHHHHHhC
Confidence            999998654

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-39  Score=363.83  Aligned_cols=218  Identities=31%  Similarity=0.503  Sum_probs=186.4

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCCC--CHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSL--QLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~~~  448 (1253)
                      .++++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.+||+++.+.  +..
T Consensus         3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   80 (250)
T PRK14266          3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV   80 (250)
T ss_pred             EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence            3789999999974  349999999999999999999999999999999999864     4899999999998653  455


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKED--A-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+++.++||+|++.+|+.|++||+.++...  . +    .+++.++++..++.+++..       ..+..+.+|||||||
T Consensus        81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q  153 (250)
T PRK14266         81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ  153 (250)
T ss_pred             HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence            678899999999999999999999875321  1 1    1334556666666554432       234567789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|+++++.
T Consensus       154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14266        154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF  233 (250)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998778999999999998876 7999999999999999999886


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       234 ~~  235 (250)
T PRK14266        234 IN  235 (250)
T ss_pred             hC
Confidence            54

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-39  Score=365.48  Aligned_cols=219  Identities=30%  Similarity=0.498  Sum_probs=185.5

Q ss_pred             CcEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCC-----CcEEEECCeeCCC--CCH
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT-----SGKILLDGHDLKS--LQL  447 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~  447 (1253)
                      +.|+++||+|+|++.  .+|+|+||++++||+++|+|+||||||||+++|+|+++|+     +|+|.++|+++..  .+.
T Consensus         6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~   83 (261)
T PRK14258          6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL   83 (261)
T ss_pred             ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence            469999999999743  4999999999999999999999999999999999999985     8999999999853  344


Q ss_pred             HHHhcccEEEeccCccCcccHHHHHhcCCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHH
Q 000851          448 KWLREQMGLVSQEPALFATSIANNILLGKED---AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK  520 (1253)
Q Consensus       448 ~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~  520 (1253)
                      ..+|+.++|++|++.+|+.|++||+.++...   .+    .+++.++++..++.+++.       ...++.+.+||||||
T Consensus        84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~  156 (261)
T PRK14258         84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ  156 (261)
T ss_pred             HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence            5678899999999999999999999875211   01    123445555555443332       234566779999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhh-cCEEEEEeC-----CEEEE
Q 000851          521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKN-----GQVVE  592 (1253)
Q Consensus       521 qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~-----G~i~~  592 (1253)
                      ||++||||++++|++|||||||++||+.+.+.+.+.|+++.  +++|+|+|||+++.+.. ||+|++|++     |++++
T Consensus       157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~  236 (261)
T PRK14258        157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE  236 (261)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence            99999999999999999999999999999999999999864  48999999999999875 899999999     99999


Q ss_pred             eeCcchhhhc
Q 000851          593 SGTHVDLISK  602 (1253)
Q Consensus       593 ~g~~~~l~~~  602 (1253)
                      .|+++++...
T Consensus       237 ~~~~~~~~~~  246 (261)
T PRK14258        237 FGLTKKIFNS  246 (261)
T ss_pred             eCCHHHHHhC
Confidence            9999998654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=1.5e-39  Score=364.95  Aligned_cols=218  Identities=26%  Similarity=0.434  Sum_probs=181.3

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCee-----CCCCCHHH-
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD-----LKSLQLKW-  449 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~-----~~~~~~~~-  449 (1253)
                      -++++|++++|+++  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+     +.+.+... 
T Consensus         6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~   83 (258)
T PRK11701          6 LLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER   83 (258)
T ss_pred             eEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence            48999999999753  49999999999999999999999999999999999999999999999998     77665543 


Q ss_pred             ---HhcccEEEeccCc--cCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhCcHHHHhcCCCCcc-ccccCCCCCCChHH
Q 000851          450 ---LREQMGLVSQEPA--LFA-TSIANNILLGK---EDASMDRVIEAAKAANAHSFVEGLPDGYQ-TQVGEGGTQLSGGQ  519 (1253)
Q Consensus       450 ---~r~~i~~v~Q~~~--lf~-~ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGq  519 (1253)
                         +++.++||+|++.  ++. .|+.+|+.+..   ......+..+     .++++++.+  |++ +..+..+.+|||||
T Consensus        84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~Gq  156 (258)
T PRK11701         84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGGM  156 (258)
T ss_pred             HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence               3567999999984  443 48899986421   0111122211     234555555  343 45667788999999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCc
Q 000851          520 KQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTH  596 (1253)
Q Consensus       520 ~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~  596 (1253)
                      |||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus       157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~  236 (258)
T PRK11701        157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT  236 (258)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999998753  7899999999999975 899999999999999999


Q ss_pred             chhhhc
Q 000851          597 VDLISK  602 (1253)
Q Consensus       597 ~~l~~~  602 (1253)
                      +++..+
T Consensus       237 ~~~~~~  242 (258)
T PRK11701        237 DQVLDD  242 (258)
T ss_pred             HHHhcC
Confidence            998754

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.7e-39  Score=353.84  Aligned_cols=202  Identities=33%  Similarity=0.552  Sum_probs=174.5

Q ss_pred             EEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEE
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~  456 (1253)
                      ++++||+++|+.    .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+  .+++.++|
T Consensus         1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~   74 (213)
T TIGR01277         1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM   74 (213)
T ss_pred             CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence            368999999962    578999999999999999999999999999999999999999999999987543  35678999


Q ss_pred             EeccCccCcc-cHHHHHhcCC-CC-----CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000851          457 VSQEPALFAT-SIANNILLGK-ED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~lf~~-ti~~ni~~g~-~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal  529 (1253)
                      |+|++.+|.. |++||+.++. +.     ...+++.++++..++.+...+.|           .+||||||||++||||+
T Consensus        75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral  143 (213)
T TIGR01277        75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL  143 (213)
T ss_pred             EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence            9999999875 9999998642 11     12335566667666665555544           48999999999999999


Q ss_pred             ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeC
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT  595 (1253)
Q Consensus       530 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~  595 (1253)
                      +.+|+++||||||++||+.+.+.+.+.|.++.+  ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus       144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            999999999999999999999999999998753  7899999999999865 89999999999999874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-39  Score=364.67  Aligned_cols=218  Identities=29%  Similarity=0.443  Sum_probs=187.4

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCC-----CCcEEEECCeeCCCC--CHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-----TSGKILLDGHDLKSL--QLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~~  448 (1253)
                      .+.+++.+++|++  ..+|+|+||++++||+++|+|+||||||||+++|+|+++|     ++|+|.++|+++...  +..
T Consensus         8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   85 (261)
T PRK14263          8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV   85 (261)
T ss_pred             eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence            4889999999964  3499999999999999999999999999999999999987     799999999998643  344


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKED-----ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRI  523 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qri  523 (1253)
                      .+|+.|+|++|++.+|+.|+.||+.++...     ...+++.++++..++.+.+..       ..++.+.+||||||||+
T Consensus        86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv  158 (261)
T PRK14263         86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL  158 (261)
T ss_pred             hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence            677889999999999989999999886421     112456666666665444322       23456778999999999


Q ss_pred             HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEe--------CCEEEEee
Q 000851          524 AIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLK--------NGQVVESG  594 (1253)
Q Consensus       524 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~--------~G~i~~~g  594 (1253)
                      +||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+        +|++++.|
T Consensus       159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g  238 (261)
T PRK14263        159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG  238 (261)
T ss_pred             HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence            9999999999999999999999999999999999998778999999999998865 89999996        89999999


Q ss_pred             Ccchhhhc
Q 000851          595 THVDLISK  602 (1253)
Q Consensus       595 ~~~~l~~~  602 (1253)
                      +++++++.
T Consensus       239 ~~~~~~~~  246 (261)
T PRK14263        239 PTAQIFQN  246 (261)
T ss_pred             CHHHHHhC
Confidence            99998764

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=8.7e-40  Score=374.19  Aligned_cols=204  Identities=25%  Similarity=0.457  Sum_probs=172.4

Q ss_pred             ECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECCeeCCCCCHHHHhcccEEEeccCccC
Q 000851          385 AYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALF  464 (1253)
Q Consensus       385 ~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf  464 (1253)
                      +|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++||||+|++.+|
T Consensus         2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~   78 (302)
T TIGR01188         2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD   78 (302)
T ss_pred             eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence            4653  349999999999999999999999999999999999999999999999999875 3456788899999999998


Q ss_pred             cc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 000851          465 AT-SIANNILLGKE--DASM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILL  537 (1253)
Q Consensus       465 ~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~qriaiARal~~~p~ili  537 (1253)
                      .. |++||+.+...  ..+.    +++.++++..++           +........+||||||||++|||||+.+|++||
T Consensus        79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll  147 (302)
T TIGR01188        79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-----------GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLF  147 (302)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            76 99999987421  1111    223334444433           333344556899999999999999999999999


Q ss_pred             EeCcCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhhhc
Q 000851          538 LDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       538 lDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  214 (302)
T TIGR01188       148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR  214 (302)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence            999999999999999999999885 47899999999999875 899999999999999999988654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.8e-40  Score=349.82  Aligned_cols=224  Identities=35%  Similarity=0.595  Sum_probs=195.9

Q ss_pred             cEEEEeEEEECCCCCCc---------------------ccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCcc
Q 000851         1005 NIELRNVSFKYPVRPDI---------------------TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~---------------------~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G 1063 (1253)
                      .|+++||+.-+..++..                     --++|+||+|+.||+.-|.|-||||||||++++.|+++|++|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            48888888877643321                     127999999999999999999999999999999999999999


Q ss_pred             EEEECCccCCCCCHHHH----hcceEEEccCCCccc-ccHHHHhccCCC--CCC----HHHHHHHHHHhcHHHHHHhCCC
Q 000851         1064 TVLIDGYDIRTLNLRSL----RRKIGLVQQEPALFS-TTIYENIKYGNE--DAS----EIELMKATKAANAHGFISRMPE 1132 (1253)
Q Consensus      1064 ~I~idG~di~~i~~~~l----R~~i~~V~Qdp~Lf~-gTIreNl~~g~~--~~~----d~ei~~al~~a~l~~~I~~lp~ 1132 (1253)
                      +|++||.|+..++.++|    |++++.|+|.--||+ .||.||..||.+  ..+    .+...++++.+|+.+|-.+.| 
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-  162 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-  162 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence            99999999999998776    457999999999987 599999999853  122    344667899999999988877 


Q ss_pred             CccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhh-hcc
Q 000851         1133 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNA 1209 (1253)
Q Consensus      1133 gldt~vge~G~~LSgGQkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti-~~~ 1209 (1253)
                                .+||||+|||+.|||||..+|+|||+|||.|+|||--+..+|+.|.++.+  ++|+++|||+|++. +--
T Consensus       163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG  232 (386)
T COG4175         163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG  232 (386)
T ss_pred             ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence                      47999999999999999999999999999999999999999999988653  78999999999986 559


Q ss_pred             CEEEEEeCCEEEEecChhHHhhcccchHHH
Q 000851         1210 DKIAVLQQGKVAEIGSHEQLLRKENGIYKQ 1239 (1253)
Q Consensus      1210 D~I~Vl~~G~ive~Gt~~eLl~~~~g~y~~ 1239 (1253)
                      |||..|++|+|+..|||+|++.++...|-+
T Consensus       233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~  262 (386)
T COG4175         233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR  262 (386)
T ss_pred             ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence            999999999999999999999877655543

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-39  Score=363.25  Aligned_cols=218  Identities=29%  Similarity=0.484  Sum_probs=183.6

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCCCCCcEEEECC------eeCCCCCHHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG------HDLKSLQLKW  449 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g------~~~~~~~~~~  449 (1253)
                      -++++|++++|+++  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|      +++...+...
T Consensus        10 ~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~   87 (257)
T PRK14246         10 VFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK   87 (257)
T ss_pred             heeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence            58999999999753  499999999999999999999999999999999999999997766665      5666667777


Q ss_pred             HhcccEEEeccCccCcc-cHHHHHhcCCCC--C-CHH----HHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          450 LREQMGLVSQEPALFAT-SIANNILLGKED--A-SMD----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       450 ~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      +|+.++|++|++.+|.+ |++||+.++...  . ..+    ++.++++..++++++       ....++.+..|||||||
T Consensus        88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q  160 (257)
T PRK14246         88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ  160 (257)
T ss_pred             HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence            88999999999999976 999999976321  1 222    233444444443222       12344567789999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhh-hcCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus       161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~  240 (257)
T PRK14246        161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF  240 (257)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999999999999877899999999999995 58999999999999999999987


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       241 ~~  242 (257)
T PRK14246        241 TS  242 (257)
T ss_pred             hC
Confidence            65

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=1.2e-39  Score=356.86  Aligned_cols=204  Identities=31%  Similarity=0.468  Sum_probs=173.6

Q ss_pred             EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHH---HHh
Q 000851         1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR---SLR 1081 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~---~lR 1081 (1253)
                      ++++||+++|+... ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..   ..|
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            78999999996321 25699999999999999999999999999999999999999999999999999877643   468


Q ss_pred             cceEEEccCCCccc-ccHHHHhccCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHH
Q 000851         1082 RKIGLVQQEPALFS-TTIYENIKYGNE---DASEI----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1082 ~~i~~V~Qdp~Lf~-gTIreNl~~g~~---~~~d~----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrl 1153 (1253)
                      +.++|+||+|.+|. .|+.||+.++..   ..+.+    ++.++++..++.+++.           ....+||||||||+
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv  150 (220)
T TIGR02982        82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV  150 (220)
T ss_pred             hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence            89999999999998 699999986531   12222    3444455555444443           34468999999999


Q ss_pred             HHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEccCchhhhccCEEEEEeCCEE
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKV 1220 (1253)
Q Consensus      1154 aLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~i 1220 (1253)
                      +|||||+++|++|||||||++||+++.+.+.+.|++..+  ++|+|+|||+++....||+|++|++|++
T Consensus       151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            999999999999999999999999999999999998753  7999999999997777999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=364.12  Aligned_cols=218  Identities=29%  Similarity=0.467  Sum_probs=181.9

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC--C---CCcEEEECCeeCCC--CCHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE--P---TSGKILLDGHDLKS--LQLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~~  448 (1253)
                      -|+++||+++|++  ..+|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++..  .+..
T Consensus         5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (252)
T PRK14255          5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV   82 (252)
T ss_pred             eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence            4899999999974  349999999999999999999999999999999999975  5   59999999999864  3345


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCC--CC-C----HHHHHHHHHHhCcHHHHhcCCCCccccccCCCCCCChHHHH
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKE--DA-S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ  521 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq~q  521 (1253)
                      .+++.++|++|++.+|+.|+++|+.++..  .. .    .+++.++++..++.+.       ........+.+|||||||
T Consensus        83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~q  155 (252)
T PRK14255         83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQQ  155 (252)
T ss_pred             HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHHH
Confidence            67788999999999998999999987521  11 1    1223333444433222       223345566799999999


Q ss_pred             HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEeeCcchhh
Q 000851          522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLI  600 (1253)
Q Consensus       522 riaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~  600 (1253)
                      |++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+..+..
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14255        156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF  235 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999999999998777899999999999865 8999999999999999888776


Q ss_pred             hc
Q 000851          601 SK  602 (1253)
Q Consensus       601 ~~  602 (1253)
                      ..
T Consensus       236 ~~  237 (252)
T PRK14255        236 LN  237 (252)
T ss_pred             cC
Confidence            54

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.3e-39  Score=357.38  Aligned_cols=205  Identities=28%  Similarity=0.464  Sum_probs=177.2

Q ss_pred             EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCccCCCCCHHHHhcceE
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      ++++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++....    ++.++
T Consensus         1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG   73 (223)
T ss_pred             CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence            478999999973   46999999999999999999999999999999999999999999999999875322    35799


Q ss_pred             EEccCCCccc-ccHHHHhccCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000851         1086 LVQQEPALFS-TTIYENIKYGNE--DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162 (1253)
Q Consensus      1086 ~V~Qdp~Lf~-gTIreNl~~g~~--~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARALlr~ 1162 (1253)
                      |+||++.+|. .|++||+.++..  ..+++++.++++..++.+....           ...+||||||||++||||++++
T Consensus        74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~  142 (223)
T TIGR03740        74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNH  142 (223)
T ss_pred             EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence            9999999886 699999975321  2245566777777776554332           3357999999999999999999


Q ss_pred             CCEEEEecccCCCChHHHHHHHHHHHHHc-CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 000851         1163 PSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQ 1228 (1253)
Q Consensus      1163 p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt~~e 1228 (1253)
                      |++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus       143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            99999999999999999999999999875 47899999999999865 99999999999999999865

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=2.7e-39  Score=362.08  Aligned_cols=227  Identities=28%  Similarity=0.423  Sum_probs=184.5

Q ss_pred             cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCccEEEECCcc-----CCCCCHHH
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD-----IRTLNLRS 1079 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~p~~G~I~idG~d-----i~~i~~~~ 1079 (1253)
                      .|+++||+++|+.   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+     +..++...
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (253)
T TIGR02323         3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE   79 (253)
T ss_pred             eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence            4899999999963   358999999999999999999999999999999999999999999999988     77666543


Q ss_pred             ----HhcceEEEccCCC--c-ccccHHHHhccCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChh
Q 000851         1080 ----LRRKIGLVQQEPA--L-FSTTIYENIKYGN---EDASEIELMKATKAANAHGFISRMPEGYQ-SHVGDRGVQLSGG 1148 (1253)
Q Consensus      1080 ----lR~~i~~V~Qdp~--L-f~gTIreNl~~g~---~~~~d~ei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSgG 1148 (1253)
                          +++.++|++|+|.  + +..|+.+|+....   ......+.     ...+.++++.+  |++ +........||||
T Consensus        80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG  152 (253)
T TIGR02323        80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG  152 (253)
T ss_pred             HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence                3467999999985  2 3458888875310   00011111     12334555555  333 3556667889999


Q ss_pred             HHHHHHHHHHhccCCCEEEEecccCCCChHHHHHHHHHHHHHc--CCceEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 000851         1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGS 1225 (1253)
Q Consensus      1149 QkQrlaLARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~ive~Gt 1225 (1253)
                      ||||++|||||+++|++|||||||++||+.+.+.+.+.|++..  .+.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus       153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~  232 (253)
T TIGR02323       153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL  232 (253)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence            9999999999999999999999999999999999999999864  37899999999999975 99999999999999999


Q ss_pred             hhHHhhcccchHHHHH
Q 000851         1226 HEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1226 ~~eLl~~~~g~y~~L~ 1241 (1253)
                      ++++..++...|.+++
T Consensus       233 ~~~~~~~~~~~~~~~~  248 (253)
T TIGR02323       233 TDQVLDDPQHPYTQLL  248 (253)
T ss_pred             HHHHhcCCCCHHHHHH
Confidence            9999865444555443

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.7e-39  Score=350.05  Aligned_cols=191  Identities=25%  Similarity=0.389  Sum_probs=164.1

Q ss_pred             cEEEEeEEEECCCC-CCcccccceeEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCccEEEECCccCCCCCHHHH
Q 000851         1005 NIELRNVSFKYPVR-PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD---PISGTVLIDGYDIRTLNLRSL 1080 (1253)
Q Consensus      1005 ~I~~~~Vsf~Y~~~-~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTL~~lL~r~~~---p~~G~I~idG~di~~i~~~~l 1080 (1253)
                      .+.++||+|.|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++   |++|+|.+||.++...+ ..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~   81 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY   81 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence            37899999999853 35679999999999999999999999999999999999999   89999999999988764 457


Q ss_pred             hcceEEEccCCCccc-ccHHHHhccCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000851         1081 RRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 1159 (1253)
Q Consensus      1081 R~~i~~V~Qdp~Lf~-gTIreNl~~g~~~~~d~ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSgGQkQrlaLARAL 1159 (1253)
                      |++++|++|++.+|. .|++||+.++..      .    .                  ..+....||||||||++|||||
T Consensus        82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~------~----~------------------~~~~~~~LS~Ge~qrl~laral  133 (202)
T cd03233          82 PGEIIYVSEEDVHFPTLTVRETLDFALR------C----K------------------GNEFVRGISGGERKRVSIAEAL  133 (202)
T ss_pred             cceEEEEecccccCCCCcHHHHHhhhhh------h----c------------------cccchhhCCHHHHHHHHHHHHH
Confidence            889999999998887 599999986421      0    0                  1223457999999999999999


Q ss_pred             ccCCCEEEEecccCCCChHHHHHHHHHHHHHcC--CceEEEEc-cCchhhh-ccCEEEEEeCCEEEEec
Q 000851         1160 LKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVA-HRLSTIR-NADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1160 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~Ia-Hrl~ti~-~~D~I~Vl~~G~ive~G 1224 (1253)
                      +++|++|||||||++||+++++.+.+.|++..+  ++|+|+++ |+++.+. .||++++|++|++++.|
T Consensus       134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            999999999999999999999999999998754  56766665 5556764 59999999999999865

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-39  Score=371.14  Aligned_cols=218  Identities=28%  Similarity=0.477  Sum_probs=184.9

Q ss_pred             cEEEEEEEEECCCCCCcccccceEEEeCCCEEEEEcCCCCcHHHHHHHHHccCC-----CCCcEEEECCeeCCCC--CHH
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE-----PTSGKILLDGHDLKSL--QLK  448 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~~~  448 (1253)
                      .|+++|++++|+++  .+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++...  +..
T Consensus        45 ~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~  122 (305)
T PRK14264         45 KLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV  122 (305)
T ss_pred             eEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence            58999999999753  49999999999999999999999999999999999986     6899999999998643  355


Q ss_pred             HHhcccEEEeccCccCcccHHHHHhcCCCCC-------------------CHHHHHHHHHHhCcHHHHhcCCCCcccccc
Q 000851          449 WLREQMGLVSQEPALFATSIANNILLGKEDA-------------------SMDRVIEAAKAANAHSFVEGLPDGYQTQVG  509 (1253)
Q Consensus       449 ~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~-------------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g  509 (1253)
                      .+|+.|+||+|++.+|+.|++||+.++....                   ..+++.++++..+       +++++++...
T Consensus       123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~  195 (305)
T PRK14264        123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA-------LWDEVNDRLD  195 (305)
T ss_pred             HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcC-------CchhhhHHhc
Confidence            6788999999999999999999999763210                   0122333333333       3334455667


Q ss_pred             CCCCCCChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhh-cCEE-EEEeC
Q 000851          510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRD-VDTI-MVLKN  587 (1253)
Q Consensus       510 ~~g~~LSgGq~qriaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i-~vl~~  587 (1253)
                      ..+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++ ++|++
T Consensus       196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~  275 (305)
T PRK14264        196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG  275 (305)
T ss_pred             CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence            778899999999999999999999999999999999999999999999998777999999999999865 8997 56799


Q ss_pred             CEEEEeeCcchhhhc
Q 000851          588 GQVVESGTHVDLISK  602 (1253)
Q Consensus       588 G~i~~~g~~~~l~~~  602 (1253)
                      |++++.|+++++...
T Consensus       276 G~i~~~g~~~~~~~~  290 (305)
T PRK14264        276 GELVEYDDTDKIFEN  290 (305)
T ss_pred             CEEEEeCCHHHHHhC
Confidence            999999999888653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1253
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		0.0
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-105
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		0.0
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-105
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		0.0
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-94
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		6e-94
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		6e-70
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		8e-70
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		3e-69
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-66
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		3e-64
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		2e-63
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		5e-59
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		6e-62
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		1e-60
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		1e-59
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		1e-60
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		9e-60
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		1e-60
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		1e-59
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		3e-60
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		2e-59
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		3e-60
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		2e-59
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		1e-59
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		2e-59
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		1e-58
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		2e-59
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		1e-58
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		1e-57
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		4e-55
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		4e-56
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-45
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		2e-55
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		4e-47
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		5e-55
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		3e-51
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		6e-55
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-44
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-53
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-42
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		1e-26
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		2e-26
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		1e-24
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		6e-26
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		2e-24
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		4e-25
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		4e-25
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		1e-23
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		7e-24
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		1e-23
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		2e-23
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		8e-23
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		1e-21
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		2e-22
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		7e-19
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		3e-22
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		3e-22
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		7e-19
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		3e-21
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		3e-21
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		3e-21
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		2e-20
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		3e-21
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-21
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-21
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		1e-20
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		1e-20
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		3e-20
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		4e-20
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		4e-20
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		7e-20
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		8e-20
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		8e-20
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		8e-20
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		3e-19
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-19
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		4e-19
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		5e-19
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		6e-19
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		5e-19
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		6e-19
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		7e-19
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		7e-19
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		2e-18
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		5e-18
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-17
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		2e-17
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		5e-17
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		1e-16
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		1e-16
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		3e-16
1g29_1	372	Malk Length = 372		3e-16
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		1e-14
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		3e-14
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		8e-14
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		6e-13
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		1e-11
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		2e-12
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		6e-12
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		7e-12
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		3e-10
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		1e-11
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		1e-11
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		1e-11
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		4e-07
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		4e-04
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		1e-11
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		4e-07
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		4e-04
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		2e-11
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		6e-10
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		3e-11
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		3e-10
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		5e-11
1yqt_A	538	Rnase-L Inhibitor Length = 538		7e-11
1yqt_A	538	Rnase-L Inhibitor Length = 538		5e-06
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		9e-11
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		1e-10
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		6e-09
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		8e-07
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		3e-08
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		7e-08
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		3e-08
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		8e-08
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		6e-08
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		5e-07
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		3e-05
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		1e-05
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		3e-05
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		3e-05
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		4e-05
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		2e-04
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		3e-04
2vf7_A	842	Crystal Structure Of Uvra2 From Deinococcus Radiodu		2e-04
3pih_A	916	T. Maritima Uvra In Complex With Fluorescein-Modifi		3e-04
2r6f_A	972	Crystal Structure Of Bacillus Stearothermophilus Uv		8e-04
3uwx_A	972	Crystal Structure Of Uvra-Uvrb Complex Length = 972		8e-04

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  818 bits (2112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/1252 (36%), Positives = 701/1252 (55%), Gaps = 58/1252 (4%)
Query: 36   SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDS---LGHLSSHPH---- 88
            S L++F  A  +D + M +G+L A IHG  LP+  ++FG M DS   +G++S +      
Sbjct: 34   SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSE 93
Query: 89   --------RLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLK 140
                    +L   ++ +              A+I V+FW     RQ  ++R K+  +++ 
Sbjct: 94   ADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMN 153
Query: 141  KDMSFFDT-EARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLT 199
            +++ +FD  +  + N    ++ D   + + IGDK G   + ++ FF GF +GFT  W+LT
Sbjct: 154  QEIGWFDVHDVGELNT--RLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 200  LLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE 259
            L+ LA+ P++ ++ G +   +S+ ++K   AY +AG VAEE+++ +R V AF G+ K +E
Sbjct: 212  LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 260  SYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTI 319
             Y+++L+EA + G K  +   I +G  + L++ ++AL  WY   LV   + + G+  T  
Sbjct: 272  RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF 331
Query: 320  INVIFSGFALGQXXXXXXXXXXXXXXXXXXXX------XXXXXSHSSERPGDDGITLPKL 373
             +V+   F++GQ                               S S  +P +       +
Sbjct: 332  FSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN-------I 384
Query: 374  AGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
             G +EF  + F+YPSR  + + + LN  V +G+T A VG SG GKST + ++QRLY+P  
Sbjct: 385  QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 433  GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
            G + +DG D++++ +++LRE +G+VSQEP LFAT+IA NI  G+ED +MD + +A K AN
Sbjct: 445  GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 493  AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
            A+ F+  LP  + T VGE G QLSGGQKQRIAIARA++RNPKILLLDEATSALD ESE +
Sbjct: 505  AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 553  VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 612
            VQ AL+K    RTTIV+AHRLSTVR+ D I     G +VE G H +L+ + G Y  LV  
Sbjct: 565  VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMT 624
Query: 613  Q--------------SSEHLSNPXXXXXXXXXXXXXFRDFPSSRRYDVEFESSKRRELQS 658
            Q              S + + N               R    S R  +     + R+L +
Sbjct: 625  QTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRR----STRKSICGPHDQDRKLST 680
Query: 659  SD--QSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYS--P 714
             +      P  S W +LKLN+ EWPY V+G   AI+ G   P F++  + ++  F +  P
Sbjct: 681  KEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP 740
Query: 715  HDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGW 774
             ++Q ++  +  +L+F+ L +++   + LQ + +   GE LT R+R  +F ++L  ++ W
Sbjct: 741  PETQ-RQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSW 799
Query: 775  FDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXX 834
            FD  +N TG L + LA DA  V+ A   RL++I QN+A   T  +I+ I  W+       
Sbjct: 800  FDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLA 859
Query: 835  XXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASE 894
                   A V E   L G      +    +  +A EAI N RTV +   E++    +A  
Sbjct: 860  IVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQS 919
Query: 895  LSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXX 954
            L  P + A+ + H+ G  +  +Q +   SYA    + + L+ Q+   F +++  F     
Sbjct: 920  LQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVF 979
Query: 955  XXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFK 1014
                        PD  K + +   +  I+ +   I        +   ++GN++   V F 
Sbjct: 980  GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFN 1039
Query: 1015 YPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT 1074
            YP RP I + + L+L+V  G++LA+VG SG GKSTV+ L+ RFYDP++G+V +DG +I+ 
Sbjct: 1040 YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099
Query: 1075 LNLRSLRRKIGLVQQEPALFSTTIYENIKYGNED--ASEIELMKATKAANAHGFISRMPE 1132
            LN++ LR ++G+V QEP LF  +I ENI YG+     S  E+++A K AN H FI  +P+
Sbjct: 1100 LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 1133 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1192
             Y + VGD+G QLSGGQKQR+AIARA+++ P ILLLDEATSALDT SE ++QEALDK  E
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 1193 GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            GRT I++AHRLSTI+NAD I V+Q GKV E G+H+QLL  + GIY  ++ +Q
Sbjct: 1220 GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL-AQKGIYFSMVSVQ 1270

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/606 (36%), Positives = 336/606 (55%), Gaps = 31/606 (5%)
Query: 667  PSIWELLKLNAAEWP---YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD------- 716
            P++  L     A W    Y ++G++ AI+ G+  PL  L    +  +F S  +       
Sbjct: 31   PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTN 90
Query: 717  ----------SQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 766
                      ++++  +   A  + G+    + V  +Q  F+ L       ++R   F A
Sbjct: 91   MSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHA 150
Query: 767  ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 826
            I++ EIGWFD+  ++ G L + L  D + +   + D++ +  Q +A     F+I F   W
Sbjct: 151  IMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208
Query: 827  RXXXXXXXXXXXX-IGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEK 885
            +             + A +  ++ L  F      AY++A +VA E +A IRTV A+G +K
Sbjct: 209  KLTLVILAISPVLGLSAGIWAKI-LSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267
Query: 886  RISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDI 945
            +   ++ + L +  +  + +   +    G + LL   SYAL  WY + L+  K  + G +
Sbjct: 268  KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQV 327
Query: 946  MKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGP---VFGILYRKTAIQPDDPASKEVTEI 1002
            +  F                 P+I   + A G    VF I+  K +I     +  +   I
Sbjct: 328  LTVFF---SVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI 384
Query: 1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
            +GN+E +N+ F YP R ++ I + LNLKV +G+++A+VG SG GKST + L+ R YDP+ 
Sbjct: 385  QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 1122
            G V IDG DIRT+N+R LR  IG+V QEP LF+TTI ENI+YG ED +  E+ KA K AN
Sbjct: 445  GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
            A+ FI ++P  + + VG+RG QLSGGQKQR+AIARA+++NP ILLLDEATSALDT SE +
Sbjct: 505  AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 1183 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1242
            +Q ALDK  EGRTTI++AHRLST+RNAD IA    G + E G+H++L+R E GIY +L+ 
Sbjct: 565  VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVM 623
Query: 1243 LQQDKN 1248
             Q   N
Sbjct: 624  TQTAGN 629

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/1252 (36%), Positives = 701/1252 (55%), Gaps = 58/1252 (4%)
Query: 36   SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDS---LGHLSSHPH---- 88
            S L++F  A  +D + M +G+L A IHG  LP+  ++FG M DS   +G++S +      
Sbjct: 34   SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSE 93
Query: 89   --------RLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLK 140
                    +L   ++ +              A+I V+FW     RQ  ++R K+  +++ 
Sbjct: 94   ADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMN 153
Query: 141  KDMSFFDT-EARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLT 199
            +++ +FD  +  + N    ++ D   + + IGDK G   + ++ FF GF +GFT  W+LT
Sbjct: 154  QEIGWFDVHDVGELNT--RLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 200  LLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE 259
            L+ LA+ P++ ++ G +   +S+ ++K   AY +AG VAEE+++ +R V AF G+ K +E
Sbjct: 212  LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 260  SYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTI 319
             Y+++L+EA + G K  +   I +G  + L++ ++AL  WY   LV   + + G+  T  
Sbjct: 272  RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF 331
Query: 320  INVIFSGFALGQXXXXXXXXXXXXXXXXXXXX------XXXXXSHSSERPGDDGITLPKL 373
             +V+   F++GQ                               S S  +P +       +
Sbjct: 332  FSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN-------I 384
Query: 374  AGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
             G +EF  + F+YPSR  + + + LN  V +G+T A VG SG GKST + ++QRLY+P  
Sbjct: 385  QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 433  GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
            G + +DG D++++ +++LRE +G+VSQEP LFAT+IA NI  G+ED +MD + +A K AN
Sbjct: 445  GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 493  AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
            A+ F+  LP  + T VGE G QLSGGQKQRIAIARA++RNPKILLLDEATSALD ESE +
Sbjct: 505  AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 553  VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 612
            VQ AL+K    RTTIV+AHRLSTVR+ D I     G +VE G H +L+ + G Y  LV  
Sbjct: 565  VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMT 624
Query: 613  Q--------------SSEHLSNPXXXXXXXXXXXXXFRDFPSSRRYDVEFESSKRRELQS 658
            Q              S + + N               R    S R  +     + R+L +
Sbjct: 625  QTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRR----STRKSICGPHDQDRKLST 680
Query: 659  SD--QSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYS--P 714
             +      P  S W +LKLN+ EWPY V+G   AI+ G   P F++  + ++  F +  P
Sbjct: 681  KEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP 740
Query: 715  HDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGW 774
             ++Q ++  +  +L+F+ L +++   + LQ + +   GE LT R+R  +F ++L  ++ W
Sbjct: 741  PETQ-RQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSW 799
Query: 775  FDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXX 834
            FD  +N TG L + LA DA  V+ A   RL++I QN+A   T  +I+ I  W+       
Sbjct: 800  FDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLA 859
Query: 835  XXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASE 894
                   A V E   L G      +    +  +A EAI N RTV +   E++    +A  
Sbjct: 860  IVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQS 919
Query: 895  LSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXX 954
            L  P + A+ + H+ G  +  +Q +   SYA    + + L+ Q+   F +++  F     
Sbjct: 920  LQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVF 979
Query: 955  XXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFK 1014
                        PD  K + +   +  I+ +   I        +   ++GN++   V F 
Sbjct: 980  GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFN 1039
Query: 1015 YPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT 1074
            YP RP I + + L+L+V  G++LA+VG SG GKSTV+ L+ RFYDP++G+V +DG +I+ 
Sbjct: 1040 YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099
Query: 1075 LNLRSLRRKIGLVQQEPALFSTTIYENIKYGNED--ASEIELMKATKAANAHGFISRMPE 1132
            LN++ LR ++G+V QEP LF  +I ENI YG+     S  E+++A K AN H FI  +P+
Sbjct: 1100 LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 1133 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1192
             Y + VGD+G QLSGGQKQR+AIARA+++ P ILLLDEATSALDT SE ++QEALDK  E
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 1193 GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            GRT I++AHRLSTI+NAD I V+Q GKV E G+H+QLL  + GIY  ++ +Q
Sbjct: 1220 GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL-AQKGIYFSMVSVQ 1270

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/606 (36%), Positives = 336/606 (55%), Gaps = 31/606 (5%)
Query: 667  PSIWELLKLNAAEWP---YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD------- 716
            P++  L     A W    Y ++G++ AI+ G+  PL  L    +  +F S  +       
Sbjct: 31   PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTN 90
Query: 717  ----------SQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 766
                      ++++  +   A  + G+    + V  +Q  F+ L       ++R   F A
Sbjct: 91   MSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHA 150
Query: 767  ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 826
            I++ EIGWFD+  ++ G L + L  D + +   + D++ +  Q +A     F+I F   W
Sbjct: 151  IMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208
Query: 827  RXXXXXXXXXXXX-IGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEK 885
            +             + A +  ++ L  F      AY++A +VA E +A IRTV A+G +K
Sbjct: 209  KLTLVILAISPVLGLSAGIWAKI-LSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267
Query: 886  RISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDI 945
            +   ++ + L +  +  + +   +    G + LL   SYAL  WY + L+  K  + G +
Sbjct: 268  KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQV 327
Query: 946  MKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGP---VFGILYRKTAIQPDDPASKEVTEI 1002
            +  F                 P+I   + A G    VF I+  K +I     +  +   I
Sbjct: 328  LTVFF---SVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI 384
Query: 1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
            +GN+E +N+ F YP R ++ I + LNLKV +G+++A+VG SG GKST + L+ R YDP+ 
Sbjct: 385  QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 1122
            G V IDG DIRT+N+R LR  IG+V QEP LF+TTI ENI+YG ED +  E+ KA K AN
Sbjct: 445  GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
            A+ FI ++P  + + VG+RG QLSGGQKQR+AIARA+++NP ILLLDEATSALDT SE +
Sbjct: 505  AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 1183 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1242
            +Q ALDK  EGRTTI++AHRLST+RNAD IA    G + E G+H++L+R E GIY +L+ 
Sbjct: 565  VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVM 623
Query: 1243 LQQDKN 1248
             Q   N
Sbjct: 624  TQTAGN 629

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/1278 (36%), Positives = 678/1278 (53%), Gaps = 91/1278 (7%)
Query: 36   SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRM----------IDSLGH--L 83
            S   L+     ++ +L+F+G+L A I GA LP+  IL G++          I++ G   L
Sbjct: 61   SIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFL 120
Query: 84   SSHPHRLTSRISEHXXXXXXXXXXXXXSAW----IGVAFWMQTGERQTARLRLKYLQSVL 139
             +  +   +                    W    I V  ++   E+   RLR ++++S+L
Sbjct: 121  PTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSIL 180
Query: 140  KKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLT 199
            ++++S+FDT      +   +  +   V++  GDK G A +YLSQF  GF V FT  WQLT
Sbjct: 181  RQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLT 239
Query: 200  LLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE 259
            L+ LAV P+ A+ G A   +MST + +    Y +AGKV EE IS +R V +  G    +E
Sbjct: 240  LVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELE 299
Query: 260  SYSHSLKEALKQGKKSGVAKGIGVGLTYGLL----FCAWALLLWYAGILVRHGDTNGGKA 315
             YS +++EA    KK+GV KG+ +G+++G +    F ++AL  +     V  G  N G  
Sbjct: 300  RYSTAVEEA----KKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDM 355
Query: 316  FTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXS--HSSERPGDDGITLPKL 373
             TT  +V+    ALG                              SS + G   +   K+
Sbjct: 356  LTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDM---KI 412
Query: 374  AGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
             G I    V F YPSRP + +   +N  V+AG+T A VG SG GKSTIIS++ R Y+   
Sbjct: 413  KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 433  GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
            GKI +DG D++ + L++LR+ + +VSQEPALF  +I  NI LGKE  + + ++ A K AN
Sbjct: 473  GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMAN 532
Query: 493  AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
            A  F++ LP+GY T VG+ GTQLSGGQKQRIAIARA++RNPKILLLDEATSALDAESE I
Sbjct: 533  AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGI 592
Query: 553  VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 612
            VQ+AL+K    RTTI++AHRLST+R+ D I+  KNGQVVE G H  L+++ G Y  LV  
Sbjct: 593  VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTA 652
Query: 613  QSSEHL--SNPXXXXXXXXXXXXXFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSI- 669
            Q+      S                 +     R   E +    R   S+  S    P I 
Sbjct: 653  QTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVID 712
Query: 670  ---------------WELLKLNAAEW----------PYAV---LGSVGAILAGMEAPLFA 701
                            EL + NA +           P+A+   +G   A + G   P ++
Sbjct: 713  EKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYS 772
Query: 702  LGITHILTAFY-SPHDSQIKRVVDQ---VALIFVGLAVVTIPVYLLQHYFYTLMGEHLTA 757
            +  T  +  F  +P D      + Q    AL+F+ LA        L  +F  +  E LT 
Sbjct: 773  VFFTSFMNVFAGNPAD-----FLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTR 827
Query: 758  RVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTA 817
             +R  +F  +LS  IG+FD  +N +G + + LA D   +R+A+  R S ++  +   V  
Sbjct: 828  DLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAG 887
Query: 818  FVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKG--FGGDYNRA---YSRATSVAREAI 872
              +AF   W+            I   VA   +L+G  F G   ++   ++ +  +A EAI
Sbjct: 888  IGLAFFYGWQMALLIIA-----ILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAI 942
Query: 873  ANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQ----LLSLCSYALGL 928
             N+RTV A   E      F  +L  P+K+A+    I G  YG +     LL+ C+Y +GL
Sbjct: 943  ENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGL 1002
Query: 929  WYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTA 988
              A ++          +++                   P+  K + A G +FG+L + + 
Sbjct: 1003 --ALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISK 1060
Query: 989  IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS 1048
            I     A  E  ++ G +  +NV F YP RP+I I + L+  V  G++LA+VG SG GKS
Sbjct: 1061 IDSLSLAG-EKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKS 1119
Query: 1049 TVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNED 1108
            TV++L+ RFYD + G + IDG +I+TLN    R +I +V QEP LF  +I ENI YG + 
Sbjct: 1120 TVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP 1179
Query: 1109 ASEI--ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 1166
            +S    ++ +A + AN H FI+ +PEG+++ VGDRG QLSGGQKQR+AIARA+++NP IL
Sbjct: 1180 SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKIL 1239
Query: 1167 LLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1226
            LLDEATSALDT SE ++QEALD+  EGRT I++AHRL+T+ NAD IAV+  G + E G+H
Sbjct: 1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTH 1299
Query: 1227 EQLLRKENGIYKQLIRLQ 1244
             QL+  E G Y +L + Q
Sbjct: 1300 TQLM-SEKGAYYKLTQKQ 1316

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score =  344 bits (883), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 316/561 (56%), Gaps = 24/561 (4%)
Query: 695  MEAPLFALGITHIL----TAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL 750
            M AP F   I  ++    T  YS  D+  +  +   A+   G A   I VYL+Q      
Sbjct: 36   MSAPFFLGKIIDVIYTNPTVDYS--DNLTRLCLGLSAVFLCGAAANAIRVYLMQTS---- 89
Query: 751  MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQN 810
             G+ +  R+R S+FS+IL  E+ +FD  +  TG LI+ L++D  L+  ++ + LS  ++ 
Sbjct: 90   -GQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRA 146
Query: 811  VALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVARE 870
             A       + F +S                  V    +L+        + ++AT +A E
Sbjct: 147  GAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEE 206
Query: 871  AIANIRTVAAYGIEKRISIQFASELSQ----PNKQALLRGHISGFGYGVSQLLSLCSYAL 926
             I N+RTV A+G E     ++AS++        K+A  R    G   G+S  L + S   
Sbjct: 207  RIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFG-ATGLSGNLIVLSV-- 263
Query: 927  GLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRK 986
             L+   +L+       G++    M                 +++KG  A G ++ +L R+
Sbjct: 264  -LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLERE 322
Query: 987  TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 1046
              +  ++         +G +E +NV F YP RP++ IF++ +L + +G   A+VG SGSG
Sbjct: 323  PKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSG 382
Query: 1047 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 1106
            KSTV+SL++R YDP SGT+ +DG+DIR LN   LR KIG V QEP LFS +I ENI YG 
Sbjct: 383  KSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA 442
Query: 1107 EDASEI---ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163
            +D S +   E+ +  + ANA  FI   P+G+ + VG++GV LSGGQKQR+AIARA+LKNP
Sbjct: 443  DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP 502
Query: 1164 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1223
             ILLLDEATSALD  +E L+QEALD+LM+GRT +++AHRLSTI+NA+ +AVL QGK+ E 
Sbjct: 503  KILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562
Query: 1224 GSHEQLLRKENGIYKQLIRLQ 1244
            G HE+LL K NGIY++L+  Q
Sbjct: 563  GKHEELLSKPNGIYRKLMNKQ 583

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score =  342 bits (878), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 315/561 (56%), Gaps = 24/561 (4%)
Query: 695  MEAPLFALGITHIL----TAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL 750
            M AP F   I  ++    T  YS  D+  +  +   A+   G A   I VYL+Q      
Sbjct: 67   MSAPFFLGKIIDVIYTNPTVDYS--DNLTRLCLGLSAVFLCGAAANAIRVYLMQTS---- 120
Query: 751  MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQN 810
             G+ +  R+R S+FS+IL  E+ +FD  +  TG LI+ L++D  L+  ++ + LS  ++ 
Sbjct: 121  -GQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRA 177
Query: 811  VALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVARE 870
             A       + F +S                  V    +L+        + ++AT +A E
Sbjct: 178  GAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEE 237
Query: 871  AIANIRTVAAYGIEKRISIQFASELSQ----PNKQALLRGHISGFGYGVSQLLSLCSYAL 926
             I N+RTV A+G E     ++AS++        K+A  R    G   G+S  L + S   
Sbjct: 238  RIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFG-ATGLSGNLIVLSV-- 294
Query: 927  GLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRK 986
             L+   +L+       G++    M                 +++KG  A G ++ +L R+
Sbjct: 295  -LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLERE 353
Query: 987  TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 1046
              +  ++         +G +E +NV F YP RP++ IF++ +L + +G   A+VG SGSG
Sbjct: 354  PKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSG 413
Query: 1047 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 1106
            KSTV+SL++R YDP SGT+ +DG+DIR LN   LR KIG V QEP LFS +I ENI YG 
Sbjct: 414  KSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA 473
Query: 1107 EDASEI---ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 1163
            +D S +   E+ +  + ANA  FI   P+G+ + VG++GV LSGGQKQR+AIARA+LKNP
Sbjct: 474  DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP 533
Query: 1164 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1223
             ILLLDEATSALD  +E L+QEALD+LM+GRT +++AH LSTI+NA+ +AVL QGK+ E 
Sbjct: 534  KILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEY 593
Query: 1224 GSHEQLLRKENGIYKQLIRLQ 1244
            G HE+LL K NGIY++L+  Q
Sbjct: 594  GKHEELLSKPNGIYRKLMNKQ 614

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score =  263 bits (671), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 179/571 (31%), Positives = 294/571 (51%), Gaps = 14/571 (2%)
Query: 680  WPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQI----KRVVDQVALIFVGLAV 735
            WP       G I+AG+   L A   T +L+      D       + V+  + L+ +GL +
Sbjct: 17   WPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI 76
Query: 736  VTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATL 795
            +      +  Y  + +   +   +R  +F  ++   + +FD  + +TG L+S +  D+  
Sbjct: 77   LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQ 134
Query: 796  VRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXX-XXXIGAFVAEQLFLKGFG 854
            V S+ +  L  +V+  A  +  F++ F  SW+             I   V  + F +   
Sbjct: 135  VASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF-RSIS 193
Query: 855  GDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYG 914
             +      + T+ A + +   + V  +G ++  + +F    ++   Q +     S     
Sbjct: 194  KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDP 253
Query: 915  VSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQ 974
            + QL++  + A  L+ AS          G I   F                     +G  
Sbjct: 254  IIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA 313
Query: 975  ALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAG 1034
            A   +F IL  +   Q  D   + +    G++E RNV+F YP R ++    N+NLK+ AG
Sbjct: 314  ACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAG 369
Query: 1035 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 1094
            +++A+VG+SGSGKST+ SL+ RFYD   G +L+DG+D+R   L SLR ++ LV Q   LF
Sbjct: 370  KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLF 429
Query: 1095 STTIYENIKYG-NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153
            + T+  NI Y   E+ S  ++ +A + A A  FI++M  G  + +G+ GV LSGGQ+QR+
Sbjct: 430  NDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489
Query: 1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIA 1213
            AIARA+L++  IL+LDEATSALDT SE  IQ ALD+L + RT++++AHRLSTI  AD+I 
Sbjct: 490  AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIV 549
Query: 1214 VLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            V++ G + E G+H +LL  ++G+Y QL ++Q
Sbjct: 550  VVEDGIIVERGTHSELL-AQHGVYAQLHKMQ 579

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score =  262 bits (670), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 180/571 (31%), Positives = 291/571 (50%), Gaps = 14/571 (2%)
Query: 680  WPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQI----KRVVDQVALIFVGLAV 735
            WP       G I+AG+   L A   T +L+      D       + V+  + L+ +GL +
Sbjct: 17   WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMI 76
Query: 736  VTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATL 795
            +      +  Y  + +   +   +R  +F  ++   + +FD  + +TG L+S +  D+  
Sbjct: 77   LRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQ 134
Query: 796  VRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXX-XXXIGAFVAEQLFLKGFG 854
            V S+ +  L  +V+  A  +  F++ F  SW+             I   V  + F +   
Sbjct: 135  VASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRF-RNIS 193
Query: 855  GDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYG 914
             +      + T+ A + +   + V  +G ++  + +F    ++   Q +     S     
Sbjct: 194  KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDP 253
Query: 915  VSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQ 974
            + QL++  + A  L+ AS          G I   F                     +G  
Sbjct: 254  IIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA 313
Query: 975  ALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAG 1034
            A   +F IL  +   Q  D   + +    G++E RNV+F YP R D+    N+NLK+ AG
Sbjct: 314  ACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAG 369
Query: 1035 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 1094
            +++A+VG+SGSGKST+ SL+ RFYD   G +L+DG+D+R   L SLR ++ LV Q   LF
Sbjct: 370  KTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLF 429
Query: 1095 STTIYENIKYG-NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153
            + T+  NI Y   E  S  ++ +A + A A  FI++M  G  + +G+ GV LSGGQ+QR+
Sbjct: 430  NDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489
Query: 1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIA 1213
            AIARA+L++  IL+LDEATSALDT SE  IQ ALD+L + RT++++AHRLSTI  AD+I 
Sbjct: 490  AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIV 549
Query: 1214 VLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            V++ G + E G+H  LL +  G+Y QL ++Q
Sbjct: 550  VVEDGVIVERGTHNDLL-EHRGVYAQLHKMQ 579

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score =  260 bits (665), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 174/240 (72%)
Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           G+I+   V F Y      + +++N S++ G+T AFVG SG GKST+I+++ R Y+ TSG+
Sbjct: 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397
Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 494
           IL+DGH++K      LR Q+GLV Q+  LF+ ++  NILLG+  A+ + V+EAAK ANAH
Sbjct: 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH 457
Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
            F+  LP GY T+VGE G +LSGGQKQR++IAR  L NP IL+LDEATSALD ESE I+Q
Sbjct: 458 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517
Query: 555 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
            AL+ +  +RTT++VAHRLST+   D I+V++NG +VE+GTH +LI+K G Y  L ++Q+
Sbjct: 518 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score =  251 bits (640), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 130/246 (52%), Positives = 179/246 (72%), Gaps = 3/246 (1%)
Query: 1001 EIK-GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 1059
            EIK G I++ +VSF+Y    +  I +++NL +  G ++A VG SG GKST+I+L+ RFYD
Sbjct: 334  EIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392
Query: 1060 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 1119
              SG +LIDG++I+     SLR +IGLVQQ+  LFS T+ ENI  G   A++ E+++A K
Sbjct: 393  VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAK 452
Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
             ANAH FI  +P+GY + VG+RGV+LSGGQKQR++IAR  L NP IL+LDEATSALD  S
Sbjct: 453  MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 1180 ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ 1239
            E++IQEALD L + RTT++VAHRLSTI +ADKI V++ G + E G+H +L+ K+ G Y+ 
Sbjct: 513  ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ-GAYEH 571
Query: 1240 LIRLQQ 1245
            L  +Q 
Sbjct: 572  LYSIQN 577

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score =  244 bits (622), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 124/259 (47%), Positives = 178/259 (68%), Gaps = 11/259 (4%)
Query: 990  QPDDPASKEVTEIKGNIELRNVSFKY----PVRPDITIFENLNLKVSAGRSLAVVGQSGS 1045
            + DDP + E+ E++G IE +NV F Y    PV  DIT        +  G+ +A+VG +GS
Sbjct: 339  EKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDIT------FHIKPGQKVALVGPTGS 392
Query: 1046 GKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG 1105
            GK+T+++L+MRFYD   G +L+DG DIR +   SLR  IG+V Q+  LFSTT+ EN+KYG
Sbjct: 393  GKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG 452
Query: 1106 NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 1165
            N  A++ E+ +A K  ++  FI  +PEGY++ + D G  LS GQ+Q +AI RA L NP I
Sbjct: 453  NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512
Query: 1166 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1225
            L+LDEATS +DT +E  IQ A+ KLMEG+T+I++AHRL+TI+NAD I VL+ G++ E+G 
Sbjct: 513  LILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572
Query: 1226 HEQLLRKENGIYKQLIRLQ 1244
            H++L++K  G Y +L   Q
Sbjct: 573  HDELIQKR-GFYYELFTSQ 590

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 157/493 (31%), Positives = 255/493 (51%), Gaps = 14/493 (2%)
Query: 129 RLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGF 188
           ++R +     +   + FFD E+    ++  I+ D+  V  A        +R  +      
Sbjct: 99  QMRRRLFNHFMHMPVRFFDQES-TGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLL 157
Query: 189 AVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAV 248
            + F + WQL+L+ + V P++A A    +     +S   + A G     AE+++   + V
Sbjct: 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVV 217
Query: 249 YAFVG---EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILV 305
            ++ G   E K  +  S+S+++   Q  K   A+ I   +   +   A   +L+ A +  
Sbjct: 218 LSYGGQEVERKRFDKVSNSMRQ---QTMKLVSAQSIADPVIQMIASLALFAVLFLASVDS 274
Query: 306 RHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGD 365
              +   G  FT + + +F    +                              +ER  D
Sbjct: 275 IRAELTPG-TFTVVFSAMFG--LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETER--D 329
Query: 366 DG-ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMV 424
           +G     ++ G+++  +V F Y  +      +++FS+  GKT A VG SGSGKSTI ++ 
Sbjct: 330 NGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389
Query: 425 QRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDR 483
            R Y+  SG I LDGHD++  +L  LR    LVSQ   LF  +IANNI    E + + ++
Sbjct: 390 TRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ 449
Query: 484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
           + +AA+ A+A  F+E +P G  T +GE GT LSGGQ+QR+AIARA+LR+  +L+LDEATS
Sbjct: 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATS 509
Query: 544 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603
           ALD ESE  +Q AL+++  N+T +V+AHRLST+   D I+V+  G+++E G H DL+++ 
Sbjct: 510 ALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569
Query: 604 GEYAALVNLQSSE 616
           G YA L  +Q  E
Sbjct: 570 GAYAQLHRIQFGE 582

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score =  226 bits (577), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 172/594 (28%), Positives = 294/594 (49%), Gaps = 27/594 (4%)
Query: 662  SFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAF-------YSP 714
            S     S W+  K     W Y  L   G +++ +   + A   T++++         +  
Sbjct: 2    SLHSDESNWQTFK---RLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGN 58
Query: 715  HDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGW 774
             +S   R++     + +GL  V         Y  + +  ++  ++R  +F+  +   + +
Sbjct: 59   AESNFLRIL---PFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRF 115
Query: 775  FDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXX 834
            FD  + +TG L+S +  D+  V  A +  L  IV+  A  +    + F  SW+       
Sbjct: 116  FD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIV 173
Query: 835  XXXXXIGA--FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFA 892
                   A  FV+++   +    +   A    TS A + +   + V +YG ++    +F 
Sbjct: 174  VAPVVAFAISFVSKRF--RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFD 231
Query: 893  SELSQPNKQALLRGHISGFGYGVSQLL-SLCSYALGLWYASVLIKQKGSNFGDIMKSFMV 951
               +   +Q +           V Q++ SL  +A+ L+ ASV   +     G     F  
Sbjct: 232  KVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAV-LFLASVDSIRAELTPGTFTVVFSA 290
Query: 952  XXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNV 1011
                            +  +G  A   +FG++  +T     D    E   + G +++++V
Sbjct: 291  MFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET---ERDNGKYEAERVNGEVDVKDV 347
Query: 1012 SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 1071
            +F Y  +    +  +++  +  G+++A+VG+SGSGKST+ +L  RFYD  SG++ +DG+D
Sbjct: 348  TFTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406
Query: 1072 IRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAHGFISRM 1130
            +R   L +LRR   LV Q   LF+ TI  NI Y  E + +  ++ +A + A+A  FI  M
Sbjct: 407  VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM 466
Query: 1131 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1190
            P+G  + +G+ G  LSGGQ+QRVAIARA+L++  +L+LDEATSALDT SE  IQ ALD+L
Sbjct: 467  PQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL 526
Query: 1191 MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
             + +T +++AHRLSTI  AD+I V+ +G++ E G H  LL  ++G Y QL R+Q
Sbjct: 527  QKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL-AQDGAYAQLHRIQ 579

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score =  236 bits (602), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 132/282 (46%), Positives = 182/282 (64%), Gaps = 11/282 (3%)
Query: 979  VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 1038
            +F +L  +T ++ D P +  +   KG IE  NV F Y    +    ++++  V  G++LA
Sbjct: 28   MFDLLKEETEVK-DLPGAGPLRFQKGRIEFENVHFSYADGRET--LQDVSFTVMPGQTLA 84
Query: 1039 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 1098
            +VG SG+GKST++ L+ RFYD  SG + IDG DI  +   SLR  IG+V Q+  LF+ TI
Sbjct: 85   LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144
Query: 1099 YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158
             +NI+YG   A   E+  A +AA  H  I   PEGY++ VG+RG++LSGG+KQRVAIAR 
Sbjct: 145  ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204
Query: 1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQG 1218
            ILK P I+LLDEATSALDT++E  IQ +L K+   RTTI+VAHRLST+ NAD+I V++ G
Sbjct: 205  ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDG 264
Query: 1219 KVAEIGSHEQLLRKENGIYKQLIRLQQ-------DKNPEAME 1253
             + E G HE LL +  G+Y  + +LQQ       D  P+ ME
Sbjct: 265  CIVERGRHEALLSR-GGVYADMWQLQQGQEETSEDTKPQTME 305

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score =  231 bits (590), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/240 (48%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  + F Y     ++ +N+N S+  G+    VG SGSGKST+  ++QR Y P +G++L
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DGHDL      WLR Q+G+V Q+  L   SI +NI L     S+++VI AAK A AH F
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           +  L +GY T VGE G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R 
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
           + KI   RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+    Y+ L  LQS 
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 241

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score =  229 bits (583), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 1005 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            +I  RN+ F+Y  +PD   I +N+NL +  G  + +VG+SGSGKST+  L+ RFY P +G
Sbjct: 1    DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             VLIDG+D+   +   LRR++G+V Q+  L + +I +NI   N   S  +++ A K A A
Sbjct: 59   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
            H FIS + EGY + VG++G  LSGGQ+QR+AIARA++ NP IL+ DEATSALD  SE++I
Sbjct: 119  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243
               + K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL +   +Y  L +L
Sbjct: 179  MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1244 QQD 1246
            Q D
Sbjct: 239  QSD 241

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score =  231 bits (590), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/240 (48%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  + F Y     ++ +N+N S+  G+    VG SGSGKST+  ++QR Y P +G++L
Sbjct: 4   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DGHDL      WLR Q+G+V Q+  L   SI +NI L     S+++VI AAK A AH F
Sbjct: 64  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           +  L +GY T VGE G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R 
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
           + KI   RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+    Y+ L  LQS 
Sbjct: 184 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 243

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score =  229 bits (583), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 1005 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            +I  RN+ F+Y  +PD   I +N+NL +  G  + +VG+SGSGKST+  L+ RFY P +G
Sbjct: 3    DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             VLIDG+D+   +   LRR++G+V Q+  L + +I +NI   N   S  +++ A K A A
Sbjct: 61   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
            H FIS + EGY + VG++G  LSGGQ+QR+AIARA++ NP IL+ DEATSALD  SE++I
Sbjct: 121  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243
               + K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL +   +Y  L +L
Sbjct: 181  MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 1244 QQD 1246
            Q D
Sbjct: 241  QSD 243

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score =  231 bits (590), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/240 (48%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  + F Y     ++ +N+N S+  G+    VG SGSGKST+  ++QR Y P +G++L
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DGHDL      WLR Q+G+V Q+  L   SI +NI L     S+++VI AAK A AH F
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           +  L +GY T VGE G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R 
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
           + KI   RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+    Y+ L  LQS 
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score =  229 bits (583), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 1005 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            +I  RN+ F+Y  +PD   I +N+NL +  G  + +VG+SGSGKST+  L+ RFY P +G
Sbjct: 7    DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             VLIDG+D+   +   LRR++G+V Q+  L + +I +NI   N   S  +++ A K A A
Sbjct: 65   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
            H FIS + EGY + VG++G  LSGGQ+QR+AIARA++ NP IL+ DEATSALD  SE++I
Sbjct: 125  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243
               + K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL +   +Y  L +L
Sbjct: 185  MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1244 QQD 1246
            Q D
Sbjct: 245  QSD 247

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score =  231 bits (588), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  + F Y     ++ +N+N S+  G+    VG +GSGKST+  ++QR Y P +G++L
Sbjct: 4   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DGHDL      WLR Q+G+V Q+  L   SI +NI L     S+++VI AAK A AH F
Sbjct: 64  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           +  L +GY T VGE G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R 
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
           + KI   RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+    Y+ L  LQS 
Sbjct: 184 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 243

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/243 (46%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 1005 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            +I  RN+ F+Y  +PD   I +N+NL +  G  + +VG++GSGKST+  L+ RFY P +G
Sbjct: 3    DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             VLIDG+D+   +   LRR++G+V Q+  L + +I +NI   N   S  +++ A K A A
Sbjct: 61   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
            H FIS + EGY + VG++G  LSGGQ+QR+AIARA++ NP IL+ DEATSALD  SE++I
Sbjct: 121  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243
               + K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL +   +Y  L +L
Sbjct: 181  MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 1244 QQD 1246
            Q D
Sbjct: 241  QSD 243

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score =  231 bits (588), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  + F Y     ++ +N+N S+  G+    VG SGSGKST+  ++QR Y P +G++L
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DGHDL      WLR Q+G+V Q+  L   SI +NI L     S+++VI AAK A AH F
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           +  L +GY T VGE G  LSGGQ+QRIAIARA++ NPKIL+ D+ATSALD ESE ++ R 
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
           + KI   RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+    Y+ L  LQS 
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/243 (46%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 1005 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            +I  RN+ F+Y  +PD   I +N+NL +  G  + +VG+SGSGKST+  L+ RFY P +G
Sbjct: 7    DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             VLIDG+D+   +   LRR++G+V Q+  L + +I +NI   N   S  +++ A K A A
Sbjct: 65   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
            H FIS + EGY + VG++G  LSGGQ+QR+AIARA++ NP IL+ D+ATSALD  SE++I
Sbjct: 125  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243
               + K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL +   +Y  L +L
Sbjct: 185  MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1244 QQD 1246
            Q D
Sbjct: 245  QSD 247

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score =  228 bits (582), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 161/493 (32%), Positives = 252/493 (51%), Gaps = 22/493 (4%)
Query: 747  FYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSI 806
            F +   ++  A +R  +F  +LS  I   +++  +T  LI+ L  D T +++ +   L I
Sbjct: 86   FASYASQNFGADLRRDLFRKVLSFSIS--NVNRFHTSSLITRLTNDVTQLQNLVMMLLRI 143
Query: 807  IVQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATS 866
            +V+   L V   V+A  ++ +            +  FV    +L   G    R    +T 
Sbjct: 144  VVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFV----WLTKKGNPLFRKIQESTD 199
Query: 867  ----VAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQL-LSL 921
                V RE +  +R V A+  E     ++ +E  +   ++L R  IS F   V  L L +
Sbjct: 200  EVNRVVRENLLGVRVVRAFRRE-----EYENENFRKANESLRRSIISAFSLIVFALPLFI 254
Query: 922  CSYALG----LWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALG 977
                +G    LW+  VL++      G IM                      IV+ S +  
Sbjct: 255  FIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAK 314
Query: 978  PVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSL 1037
             V  +L  K AI+  D A   +  ++G++   NV F+Y    D  +   +N  V  G  +
Sbjct: 315  RVLEVLNEKPAIEEADNALA-LPNVEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLV 372
Query: 1038 AVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTT 1097
            AV+G++GSGKST+++L+ R  DP  G V +D  D+RT+ L+ LR  I  V QE  LFS T
Sbjct: 373  AVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGT 432
Query: 1098 IYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157
            I EN+K+G EDA++ E+++A K A  H FI  +PEGY S V   G   SGGQKQR++IAR
Sbjct: 433  IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIAR 492
Query: 1158 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1217
            A++K P +L+LD+ TS++D  +E  I + L +  +G TT ++  ++ T   ADKI VL +
Sbjct: 493  ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHE 552
Query: 1218 GKVAEIGSHEQLL 1230
            GKVA  G+H++LL
Sbjct: 553  GKVAGFGTHKELL 565

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  + F Y     ++ +N+N S+  G+    VG SGSGKST+  ++QR Y P +G++L
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DGHDL      WLR Q+G+V Q+  L   SI +NI L     S+++VI AAK A AH F
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           +  L +GY T VGE G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R 
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
           + KI   RT I++A RLSTV++ D I+V++ G++VE G H +L+S+    Y+ L  LQS 
Sbjct: 182 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 241

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score =  225 bits (573), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/243 (46%), Positives = 167/243 (68%), Gaps = 3/243 (1%)
Query: 1005 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            +I  RN+ F+Y  +PD   I +N+NL +  G  + +VG+SGSGKST+  L+ RFY P +G
Sbjct: 1    DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             VLIDG+D+   +   LRR++G+V Q+  L + +I +NI   N   S  +++ A K A A
Sbjct: 59   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
            H FIS + EGY + VG++G  LSGGQ+QR+AIARA++ NP IL+ DEATSALD  SE++I
Sbjct: 119  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243
               + K+ +GRT I++A RLST++NAD+I V+++GK+ E G H++LL +   +Y  L +L
Sbjct: 179  MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1244 QQD 1246
            Q D
Sbjct: 239  QSD 241

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  + F Y     ++ +N+N S+  G+    VG SGSGKST+  ++QR Y P +G++L
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DGHDL      WLR Q+G+V Q+  L   SI +NI L     S+++VI AAK A AH F
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           +  L +GY T VGE G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R 
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
           + KI   RT I++A RLSTV++ D I+V++ G++VE G H +L+S+    Y+ L  LQS 
Sbjct: 188 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score =  225 bits (573), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/243 (46%), Positives = 167/243 (68%), Gaps = 3/243 (1%)
Query: 1005 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            +I  RN+ F+Y  +PD   I +N+NL +  G  + +VG+SGSGKST+  L+ RFY P +G
Sbjct: 7    DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             VLIDG+D+   +   LRR++G+V Q+  L + +I +NI   N   S  +++ A K A A
Sbjct: 65   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
            H FIS + EGY + VG++G  LSGGQ+QR+AIARA++ NP IL+ DEATSALD  SE++I
Sbjct: 125  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243
               + K+ +GRT I++A RLST++NAD+I V+++GK+ E G H++LL +   +Y  L +L
Sbjct: 185  MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1244 QQD 1246
            Q D
Sbjct: 245  QSD 247

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score =  222 bits (566), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/244 (44%), Positives = 164/244 (67%), Gaps = 2/244 (0%)
Query: 372 KLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
           K    IEFS+V F+YP +  H   +++NF + +G T A VG +GSGKSTI  ++ R Y+ 
Sbjct: 13  KFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKA 490
             G I + G ++       +R  +G+V Q+  LF  +I  NIL GK DA+ + VI+A K+
Sbjct: 73  -EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKS 131
Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
           A  + F+E LP  + T VG  G +LSGG++QRIAIAR +L++PKI++ DEATS+LD+++E
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 551 LIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 610
            + Q+A+E +  NRT I++AHRLST+   ++I++L  G++VE GTH DL+   GEYA + 
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMW 251
Query: 611 NLQS 614
           N+QS
Sbjct: 252 NMQS 255

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score =  213 bits (543), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 107/244 (43%), Positives = 168/244 (68%), Gaps = 2/244 (0%)
Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            NIE  +V+F YP + +    +++N  + +G + A+VG +GSGKST+  L+ RFYD   G 
Sbjct: 17   NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD 75
Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 1124
            + I G ++   N  S+R  IG+V Q+  LF+ TI  NI YG  DA++ E++KATK+A  +
Sbjct: 76   IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
             FI  +P+ + + VG++G++LSGG++QR+AIAR +LK+P I++ DEATS+LD+ +E L Q
Sbjct: 136  DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 1185 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            +A++ L + RT I++AHRLSTI +A+ I +L +GK+ E G+H+ LL K NG Y ++  +Q
Sbjct: 196  KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL-KLNGEYAEMWNMQ 254
Query: 1245 QDKN 1248
               N
Sbjct: 255  SGGN 258

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score =  217 bits (552), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 157/243 (64%), Gaps = 4/243 (1%)
Query: 372 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
            + G ++F +V FAYP+ P++ V + L F++  GK  A VGP+GSGKST+ +++Q LY+P
Sbjct: 12  NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAK 489
           T GK+LLDG  L      +L  Q+  V QEP LF  S   NI  G     +M+ +   A 
Sbjct: 72  TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
            + AH F+ G P GY T+VGE G QLSGGQ+Q +A+ARA++R P++L+LD+ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 550 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 607
           +L VQR L +    ++RT +++ H+LS       I+ LK G V E GTH+ L+ +GG Y 
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 608 ALV 610
           ++V
Sbjct: 252 SMV 254

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score =  181 bits (460), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 4/243 (1%)
Query: 1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
            +KG ++ ++VSF YP  P++ + + L   +  G+  A+VG +GSGKSTV +L+   Y P 
Sbjct: 13   MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1062 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK-A 1120
             G VL+DG  +   +   L  ++  V QEP LF  +  ENI YG      +E + A    
Sbjct: 73   GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
            + AH FIS  P+GY + VG+ G QLSGGQ+Q VA+ARA+++ P +L+LD+ATSALD  ++
Sbjct: 133  SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 1181 NLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1238
              +Q  L +  E   RT +++ H+LS    A  I  L++G V E G+H QL+ +  G Y+
Sbjct: 193  LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 1239 QLI 1241
             ++
Sbjct: 252  SMV 254

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score =  214 bits (545), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 160/243 (65%), Gaps = 4/243 (1%)
Query: 373 LAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431
           L G ++F +V FAYP+RP  +V + L F++  G+  A VGP+GSGKST+ +++Q LY+PT
Sbjct: 11  LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 432 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAKA 490
            G++LLDG  L   + ++L  Q+  V QEP +F  S+  NI  G  +  +M+ +  AA  
Sbjct: 71  GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
           + AHSF+ GLP GY T+V E G+QLSGGQ+Q +A+ARA++R P +L+LD+ATSALDA S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 551 LIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 608
           L V++ L +     +R+ +++   LS V   D I+ L+ G + E GTH  L+ K G Y A
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 250
Query: 609 LVN 611
           +V 
Sbjct: 251 MVQ 253

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score =  187 bits (474), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 152/248 (61%), Gaps = 4/248 (1%)
Query: 1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
            ++G ++ ++VSF YP RPD+ + + L   +  G   A+VG +GSGKSTV +L+   Y P 
Sbjct: 11   LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 1062 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-NEDASEIELMKATKA 1120
             G +L+DG  +     R L R++  V QEP +F  ++ ENI YG  +  +  E+  A   
Sbjct: 71   GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
            + AH FIS +P+GY + V + G QLSGGQ+Q VA+ARA+++ P +L+LD+ATSALD  S+
Sbjct: 131  SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 1181 NLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1238
              +++ L +  E   R+ +++   LS +  AD I  L+ G + E G+H+QL+ K+ G Y 
Sbjct: 191  LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYW 249
Query: 1239 QLIRLQQD 1246
             +++   D
Sbjct: 250  AMVQAPAD 257

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score =  213 bits (542), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/233 (46%), Positives = 156/233 (66%), Gaps = 2/233 (0%)
Query: 382 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD 441
           V FAY      +  +++F        AF GPSG GKSTI S+++R Y+PT+G+I +DG  
Sbjct: 7   VDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 442 LKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGL 500
           + ++ L+  R Q+G VSQ+ A+ A +I  N+  G E D + + + +    A A SFVE +
Sbjct: 66  IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
           PD   T+VGE G ++SGGQ+QR+AIARA LRNPKIL+LDEAT++LD+ESE +VQ+AL+ +
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185
Query: 561 MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
           M  RTT+V+AHRLST+ D D I  ++ GQ+  SG H +L++    YA  V+ Q
Sbjct: 186 MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score =  201 bits (510), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/223 (44%), Positives = 151/223 (67%), Gaps = 3/223 (1%)
Query: 1009 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 1068
            R+V F Y       I  +++ +      +A  G SG GKST+ SL+ RFY P +G + ID
Sbjct: 5    RHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1069 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAHGFI 1127
            G  I  ++L + R +IG V Q+ A+ + TI EN+ YG E D ++ +L +    A A  F+
Sbjct: 63   GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1128 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1187
              MP+   + VG+RGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ SE+++Q+AL
Sbjct: 123  ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1188 DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1230
            D LM+GRTT+++AHRLSTI +ADKI  +++G++   G H +L+
Sbjct: 183  DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score =  213 bits (542), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 4/243 (1%)
Query: 372 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
            + G ++F +V FAYP+ P++ V + L F++  GK  A VGP+GSGKST+ +++Q LY+P
Sbjct: 12  NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAK 489
           T GK+LLDG  L      +L  Q+  V QEP LF  S   NI  G     +M+ +   A 
Sbjct: 72  TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
            + AH F+ G P GY T+VGE G QLSGGQ+Q +A+ARA++R P++L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 550 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 607
           +L VQR L +    ++RT +++  +LS       I+ LK G V E GTH+ L+ +GG Y 
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 608 ALV 610
           ++V
Sbjct: 252 SMV 254

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score =  177 bits (449), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 144/243 (59%), Gaps = 4/243 (1%)
Query: 1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
            +KG ++ ++VSF YP  P++ + + L   +  G+  A+VG +GSGKSTV +L+   Y P 
Sbjct: 13   MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1062 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK-A 1120
             G VL+DG  +   +   L  ++  V QEP LF  +  ENI YG      +E + A    
Sbjct: 73   GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
            + AH FIS  P+GY + VG+ G QLSGGQ+Q VA+ARA+++ P +L+LD ATSALD  ++
Sbjct: 133  SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1181 NLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1238
              +Q  L +  E   RT +++  +LS    A  I  L++G V E G+H QL+ +  G Y+
Sbjct: 193  LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 1239 QLI 1241
             ++
Sbjct: 252  SMV 254

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score =  208 bits (529), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/243 (43%), Positives = 154/243 (63%), Gaps = 4/243 (1%)
Query: 372 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
            + G ++F +V FAYP+ P++ V + L F++  GK  A VGP+GSGKST+ +++Q LY+P
Sbjct: 12  NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAK 489
           T GK+LLDG  L      +L  Q+  V QEP LF  S   NI  G     +M+ +   A 
Sbjct: 72  TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
            + AH F+ G P GY T+VGE G QL+ GQ+Q +A+ARA++R P++L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 550 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 607
           +L VQR L +    ++RT +++  +LS       I+ LK G V E GTH+ L+ +GG Y 
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 608 ALV 610
           ++V
Sbjct: 252 SMV 254

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score =  172 bits (436), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/243 (37%), Positives = 143/243 (58%), Gaps = 4/243 (1%)
Query: 1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
            +KG ++ ++VSF YP  P++ + + L   +  G+  A+VG +GSGKSTV +L+   Y P 
Sbjct: 13   MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 1062 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK-A 1120
             G VL+DG  +   +   L  ++  V QEP LF  +  ENI YG      +E + A    
Sbjct: 73   GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
            + AH FIS  P+GY + VG+ G QL+ GQ+Q VA+ARA+++ P +L+LD ATSALD  ++
Sbjct: 133  SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1181 NLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1238
              +Q  L +  E   RT +++  +LS    A  I  L++G V E G+H QL+ +  G Y+
Sbjct: 193  LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 1239 QLI 1241
             ++
Sbjct: 252  SMV 254

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 129/234 (55%), Gaps = 18/234 (7%)
Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
             I+L N+  K+    + T   N+NLK+  G  +A++G SGSGKST++  +   Y P SG 
Sbjct: 3    EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNE--DASEIELMKATKAA 1121
            +  D  D+  L  +   R +GLV Q  AL+   T+Y+NI +  E   A   E+ K  +  
Sbjct: 60   IYFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117
Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
                 I ++   Y         QLSGGQ+QRVAIARA++K P +LLLDE  S LD     
Sbjct: 118  AKMLHIDKLLNRYPW-------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRL 170
Query: 1182 LIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
             ++  L +L +  G TT+ V H +   +  AD+IAV+++G++ ++G+ +++  K
Sbjct: 171  EVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 132/247 (53%), Gaps = 16/247 (6%)
Query: 384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443
           F   +R      N++  V AG+ +  +G SG+GKST+I  V  L  PT G +L+DG +L 
Sbjct: 11  FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 70
Query: 444 SL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEG 499
           +L   +L   R Q+G++ Q   L ++ ++  N+ L  E  +  +     +     S V G
Sbjct: 71  TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-G 129
Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
           L D + +      + LSGGQKQR+AIARA+  NPK+LL DEATSALD  +   +   L+ 
Sbjct: 130 LGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Query: 560 IMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
           I  NR    T +++ H +  V+ + D + V+ NG+++E  T  ++ S      A   +QS
Sbjct: 186 I--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 243
Query: 615 SEHLSNP 621
           + HL  P
Sbjct: 244 TLHLDIP 250

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 129/245 (52%), Gaps = 39/245 (15%)
Query: 1006 IELRNVS--FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            I+L N++  F    R  I    N++L V AG+   V+G SG+GKST+I  V     P  G
Sbjct: 2    IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 1064 TVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEI--- 1112
            +VL+DG ++ TL+   L   RR+IG++ Q   L S+ T++ N+    +  N    E+   
Sbjct: 61   SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 1113 --ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
              EL+      + H       + Y S+       LSGGQKQRVAIARA+  NP +LL DE
Sbjct: 121  VTELLSLVGLGDKH-------DSYPSN-------LSGGQKQRVAIARALASNPKVLLCDE 166
Query: 1171 ATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGK------VA 1221
            ATSALD A+   I E L  +    G T +++ H +  + R  D +AV+  G+      V+
Sbjct: 167  ATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 226
Query: 1222 EIGSH 1226
            E+ SH
Sbjct: 227  EVFSH 231

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score =  117 bits (292), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 16/247 (6%)
Query: 384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443
           F   +R      N++  V AG+ +  +G SG+GKST+I  V  L  PT G +L+DG +L 
Sbjct: 34  FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93
Query: 444 SL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEG 499
           +L   +L   R Q+G++ Q   L ++ ++  N+ L  E  +  +     +     S V G
Sbjct: 94  TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-G 152
Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
           L D + +      + LSGGQKQR+AIARA+  NPK+LL D+ATSALD  +   +   L+ 
Sbjct: 153 LGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 560 IMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
           I  NR    T +++ H +  V+ + D + V+ NG+++E  T  ++ S      A   +QS
Sbjct: 209 I--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266
Query: 615 SEHLSNP 621
           + HL  P
Sbjct: 267 TLHLDIP 273

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/248 (35%), Positives = 130/248 (52%), Gaps = 39/248 (15%)
Query: 1003 KGNIELRNVS--FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060
            K  I+L N++  F    R  I    N++L V AG+   V+G SG+GKST+I  V     P
Sbjct: 22   KHMIKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 1061 ISGTVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEI 1112
              G+VL+DG ++ TL+   L   RR+IG++ Q   L S+ T++ N+    +  N    E+
Sbjct: 81   TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 1113 -----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 1167
                 EL+      + H       + Y S+       LSGGQKQRVAIARA+  NP +LL
Sbjct: 141  KRRVTELLSLVGLGDKH-------DSYPSN-------LSGGQKQRVAIARALASNPKVLL 186
Query: 1168 LDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGK----- 1219
             D+ATSALD A+   I E L  +    G T +++ H +  + R  D +AV+  G+     
Sbjct: 187  CDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 246
Query: 1220 -VAEIGSH 1226
             V+E+ SH
Sbjct: 247  TVSEVFSH 254

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 127/241 (52%), Gaps = 19/241 (7%)
Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            +I +RN +F +  R D      +   +  G  +AVVGQ G GKS+++S ++   D + G 
Sbjct: 3    SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 1124
            V I G              +  V Q+  + + ++ ENI +G +   E       +A    
Sbjct: 62   VAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALL 107
Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
              +  +P G ++ +G++GV LSGGQKQRV++ARA+  N  I L D+  SA+D      I 
Sbjct: 108  PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 1185 EAL---DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241
            E +     +++ +T I+V H +S +   D I V+  GK++E+GS+++LL ++ G + + +
Sbjct: 168  ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAEFL 226
Query: 1242 R 1242
            R
Sbjct: 227  R 227

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 16/247 (6%)
Query: 384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443
           F   +R      N++  V AG+ +  +G SG+GKST+I  V  L  PT G +L+DG +L 
Sbjct: 34  FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93
Query: 444 SL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEG 499
           +L   +L   R Q+G + Q   L ++ ++  N+ L  E  +  +     +     S V G
Sbjct: 94  TLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-G 152
Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
           L D + +      + LSGGQKQR+AIARA+  NPK+LL D+ATSALD  +   +   L+ 
Sbjct: 153 LGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 560 IMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
           I  NR    T +++ H    V+ + D + V+ NG+++E  T  ++ S      A   +QS
Sbjct: 209 I--NRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266
Query: 615 SEHLSNP 621
           + HL  P
Sbjct: 267 TLHLDIP 273

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/248 (35%), Positives = 128/248 (51%), Gaps = 39/248 (15%)
Query: 1003 KGNIELRNVS--FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060
            K  I+L N++  F    R  I    N++L V AG+   V+G SG+GKST+I  V     P
Sbjct: 22   KHXIKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 1061 ISGTVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEI 1112
              G+VL+DG ++ TL+   L   RR+IG + Q   L S+ T++ N+    +  N    E+
Sbjct: 81   TEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 1113 -----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 1167
                 EL+      + H       + Y S+       LSGGQKQRVAIARA+  NP +LL
Sbjct: 141  KRRVTELLSLVGLGDKH-------DSYPSN-------LSGGQKQRVAIARALASNPKVLL 186
Query: 1168 LDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGK----- 1219
             D+ATSALD A+   I E L  +    G T +++ H    + R  D +AV+  G+     
Sbjct: 187  CDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQD 246
Query: 1220 -VAEIGSH 1226
             V+E+ SH
Sbjct: 247  TVSEVFSH 254

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score =  110 bits (274), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 118/214 (55%), Gaps = 16/214 (7%)
Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083
             +NL+LKV +G    ++G +G+GK+  + L+  F+ P SG +L+DG D+   +L   +  
Sbjct: 16   LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV--TDLSPEKHD 73
Query: 1084 IGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 1142
            I  V Q  +LF    + +N+++G         M+  K  +    +    +    H+ DR 
Sbjct: 74   IAFVYQNYSLFPHMNVKKNLEFG---------MRMKKIKDPKRVLDTARDLKIEHLLDRN 124
Query: 1143 -VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR--TTIMV 1199
             + LSGG++QRVA+ARA++ NP ILLLDE  SALD  ++   +E L  L +    T + +
Sbjct: 125  PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 1200 AHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRK 1232
             H  +  R  AD+IAV+  GK+ ++G  E++  K
Sbjct: 185  THDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score =  108 bits (271), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 125/229 (54%), Gaps = 21/229 (9%)
Query: 1006 IELRNVSFKYPVRPDITI-FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I+L+NV+  Y +  +I    +N+NL +  G  ++++G SGSGKST+++++     P  G 
Sbjct: 2    IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1065 VLIDGYDIRTLN---LRSLRR-KIGLVQQEPALFST-TIYENI------KYGNEDASEIE 1113
            V ID      L+   L  +RR KIG V Q+  L    T  EN+      KY    + E  
Sbjct: 62   VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
              +A +       ++ + E + +H   +  QLSGGQ+QRVAIARA+  NP I+L D+ T 
Sbjct: 122  RKRALECLK----MAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTG 174
Query: 1174 ALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
            ALD+ +   I + L KL E  G+T ++V H ++  R  ++I  L+ G+V
Sbjct: 175  ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score =  108 bits (270), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 121/229 (52%), Gaps = 21/229 (9%)
Query: 1006 IELRNVSFKYPVRPDITI-FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I+L+NV+  Y    +I    +N+NL +  G  +++ G SGSGKST ++++     P  G 
Sbjct: 2    IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1065 VLIDGYDIRTLN---LRSLRR-KIGLVQQEPALFST-TIYENI------KYGNEDASEIE 1113
            V ID      L+   L  +RR KIG V Q+  L    T  EN+      KY    + E  
Sbjct: 62   VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
              +A +        + + E + +H   +  QLSGGQ+QRVAIARA+  NP I+L DE T 
Sbjct: 122  RKRALECLKX----AELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADEPTG 174
Query: 1174 ALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
            ALD+ +   I + L KL E  G+T ++V H ++  R  ++I  L+ G+V
Sbjct: 175  ALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score =  106 bits (265), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           GQ+   ++   Y    + + EN++FS+  G+    +G +GSGKST++S   RL   T G+
Sbjct: 18  GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGE 76
Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVI-EAAKAANA 493
           I +DG    S+ L+  R+  G++ Q+  +F+ +   N  L    A  D+ I + A     
Sbjct: 77  IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN--LDPNAAHSDQEIWKVADEVGL 134
Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
            S +E  P      + +GG  LS G KQ + +AR+VL   KILLLDE ++ LD  +  I+
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 554 QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
           +R L++  ++ T I+   R+  + + D  +V++  +V +  + ++L
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 3/222 (1%)
Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            G + +++++ KY       I EN++  +S G+ + ++G++GSGKST++S  +R  +   G
Sbjct: 18   GQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 75
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
             + IDG    ++ L   R+  G++ Q+  +FS T  +N+   N   S+ E+ K       
Sbjct: 76   EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGL 134
Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
               I + P      + D G  LS G KQ + +AR++L    ILLLDE ++ LD  +  +I
Sbjct: 135  RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 1184 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1225
            +  L +     T I+   R+  +   D+  V+++ KV +  S
Sbjct: 195  RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDS 236

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 31/226 (13%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWL 450
           V + +N  +  G+    +GPSGSGKST +  +  L +   G+I++DG +LK+    L  +
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 451 REQMGLVSQEPALFA-TSIANNILLGK-----------EDASMDRVIEAAKAANAHSFVE 498
           RE++G+V Q   LF   ++ NNI L             E  +M+ + +      AH++  
Sbjct: 99  REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 156
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
             PD            LSGGQ QR+AIARA+   PKI+L DE TSALD E    V   ++
Sbjct: 157 --PD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 559 KIMSN-RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
           ++ +   T +VV H +   R+V D ++ +  G ++E G   DL  +
Sbjct: 204 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 9/217 (4%)
Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT--LNLR 1078
            + + + +N+ +  G  + V+G SGSGKST +  +    D   G ++IDG +++    NL 
Sbjct: 37   LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 1079 SLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSH 1137
             +R ++G+V Q   LF   T+  NI        +    KA   A A   + ++  G +  
Sbjct: 97   KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE--AKAMELLDKV--GLKDK 152
Query: 1138 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTT 1196
                   LSGGQ QRVAIARA+   P I+L DE TSALD      +   + +L  EG T 
Sbjct: 153  AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTM 212
Query: 1197 IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
            ++V H +   R   D++  +  G + E G  E L  +
Sbjct: 213  VVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 129/240 (53%), Gaps = 25/240 (10%)
Query: 1006 IELRNVSFKYPVRPDITI-FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            ++L+NV+  Y +  +I    +N+NL +  G  ++++G SGSGKST+++++     P  G 
Sbjct: 2    VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1065 VLIDGYDIRTLN---LRSLRR-KIGLVQQEPALFST-TIYENI------KYGNEDASEIE 1113
            V ID      L+   L  +RR KIG V Q+  L    T  EN+      KY    + E  
Sbjct: 62   VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
              +A +       ++ + E + +H   +  QLSGGQ+QRVAIARA+  NP I+L D+ T 
Sbjct: 122  RKRALECLK----MAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTW 174
Query: 1174 ALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231
            ALD+ +   I + L KL E  G+T ++V H ++  R  ++I  L+ G+V      E+ LR
Sbjct: 175  ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV----EREEKLR 230

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 31/226 (13%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWL 450
           V + +N  +  G+    +GPSGSGKST +  +  L +   G+I++DG +LK+    L  +
Sbjct: 18  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 451 REQMGLVSQEPALFA-TSIANNILLGK-----------EDASMDRVIEAAKAANAHSFVE 498
           RE++G+V Q   LF   ++ NNI L             E  +M+ + +      AH++  
Sbjct: 78  REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 135
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
             PD            LSGGQ QR+AIARA+   PKI+L DE TSALD E    V   ++
Sbjct: 136 --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 182
Query: 559 KIMSN-RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
           ++ +   T +VV H +   R+V D ++ +  G ++E G   DL  +
Sbjct: 183 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 9/217 (4%)
Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT--LNLR 1078
            + + + +N+ +  G  + V+G SGSGKST +  +    D   G ++IDG +++    NL 
Sbjct: 16   LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 1079 SLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSH 1137
             +R ++G+V Q   LF   T+  NI        +    KA   A A   + ++  G +  
Sbjct: 76   KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE--AKAMELLDKV--GLKDK 131
Query: 1138 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTT 1196
                   LSGGQ QRVAIARA+   P I+L DE TSALD      +   + +L  EG T 
Sbjct: 132  AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTM 191
Query: 1197 IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
            ++V H +   R   D++  +  G + E G  E L  +
Sbjct: 192  VVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 27/223 (12%)
Query: 1027 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 1086
            ++ ++  G  + ++G SGSGK+T++ L+     P  G V I G   R  +L   +R +GL
Sbjct: 34   VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK--RVTDLPPQKRNVGL 91
Query: 1087 VQQEPALFS-TTIYENIKYG------NEDASEIELMKATKAANAHGFISRMPEGYQSHVG 1139
            V Q  ALF   T+Y+N+ +G       +D  +  + +  +      + +R P        
Sbjct: 92   VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH------- 144
Query: 1140 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS----ENLIQEALDKLMEGRT 1195
                +LSGGQ+QRVA+ARA+   P +LL DE  +A+DT         +++  D++  G T
Sbjct: 145  ----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM--GVT 198
Query: 1196 TIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1237
            ++ V H +   +  AD++ VL +G V + G+ E++  K   ++
Sbjct: 199  SVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 15/221 (6%)
Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069
            NVSF +       + +N+NL +  G  LA+ G +GSGK++++ L++   +   G +   G
Sbjct: 40   NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1070 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 1129
                         ++    Q   +   TI ENI +G     E       KA      I++
Sbjct: 100  -------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALD 1188
              E   + +G+ GV LSGGQ+ R+++ARA+ K+  + LLD     LD    E + +  + 
Sbjct: 146  FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1189 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            KLM  +T I+V  ++  +R ADKI +L QG     G+  +L
Sbjct: 206  KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score =  101 bits (251), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 113/213 (53%), Gaps = 11/213 (5%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
            EN++  ++ G+     G +GSGKST++ +V  L EPTSG +L DG   K  +   +R  
Sbjct: 23  LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 79
Query: 454 MGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
           +G+  Q P    FA  + + +    ++   DR         A  FV    D ++ +V   
Sbjct: 80  IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRV--- 135
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVA 570
              LSGG+K+R+AIA  ++  P IL+LDE    LD E +  + R +EK  +  +T I+++
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 571 HRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 602
           H + TV   VD ++VL+ G+ V  GT ++ + K
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 21/237 (8%)
Query: 1006 IELRNVS--FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            IE+ NVS  F      +    EN++L ++ G  L V G +GSGKST++ +V    +P SG
Sbjct: 3    IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE----DASEIELMKA 1117
             VL DG   +      +RR IG+  Q P    F+  +++ + +  +    D   + L+K 
Sbjct: 63   DVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK- 118
Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
                 A  F+    + ++  V      LSGG+K+RVAIA  I+  P IL+LDE    LD 
Sbjct: 119  ----KAMEFVGLDFDSFKDRV---PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 1178 ASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
              +  +   ++K    G+T I+++H + T+ N  D++ VL++GK    G+  + L K
Sbjct: 172  EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 15/221 (6%)
Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069
            NVSF +       + +N+NL +  G  LA+ G +GSGK++++ L++   +   G +   G
Sbjct: 40   NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1070 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 1129
                         ++    Q   +   TI ENI +G     E       KA      I++
Sbjct: 100  -------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALD 1188
              E   + +G+ GV LSGGQ+ R+++ARA+ K+  + LLD     LD    E + +  + 
Sbjct: 146  FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1189 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            KLM  +T I+V  ++  +R ADKI +L QG     G+  +L
Sbjct: 206  KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score =  101 bits (251), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 113/213 (53%), Gaps = 11/213 (5%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
            EN++  ++ G+     G +GSGKST++ +V  L EPTSG +L DG   K  +   +R  
Sbjct: 25  LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 81
Query: 454 MGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
           +G+  Q P    FA  + + +    ++   DR         A  FV    D ++ +V   
Sbjct: 82  IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRV--- 137
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVA 570
              LSGG+K+R+AIA  ++  P IL+LDE    LD E +  + R +EK  +  +T I+++
Sbjct: 138 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 571 HRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 602
           H + TV   VD ++VL+ G+ V  GT ++ + K
Sbjct: 198 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score =  100 bits (250), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 122/239 (51%), Gaps = 21/239 (8%)
Query: 1004 GNIELRNVS--FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
            G IE+ NVS  F      +    EN++L ++ G  L V G +GSGKST++ +V    +P 
Sbjct: 3    GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1062 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE----DASEIELM 1115
            SG VL DG   +      +RR IG+  Q P    F+  +++ + +  +    D   + L+
Sbjct: 63   SGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 119
Query: 1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
            K      A  F+    + ++  V      LSGG+K+RVAIA  I+  P IL+LDE    L
Sbjct: 120  K-----KAMEFVGLDFDSFKDRV---PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 171
Query: 1176 DTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
            D   +  +   ++K    G+T I+++H + T+ N  D++ VL++GK    G+  + L K
Sbjct: 172  DREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 15/221 (6%)
Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069
            NVSF +       + +N+NL +  G  LA+ G +GSGK++++ L++   +   G +   G
Sbjct: 40   NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1070 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 1129
                         ++    Q   +   TI ENI  G     E       KA      I++
Sbjct: 100  -------------RVSFCSQFSWIMPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALD 1188
              E   + +G+ GV LSGGQ+ R+++ARA+ K+  + LLD     LD    E + +  + 
Sbjct: 146  FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1189 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            KLM  +T I+V  ++  +R ADKI +L QG     G+  +L
Sbjct: 206  KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 15/221 (6%)
Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069
            NVSF +       + +N+NL +  G  LA+ G +GSGK++++ L++   +   G +   G
Sbjct: 40   NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1070 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 1129
                         ++    Q   +   TI ENI  G     E       KA      I++
Sbjct: 100  -------------RVSFCSQFSWIMPGTIKENIISG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALD 1188
              E   + +G+ GV LSGGQ+ R+++ARA+ K+  + LLD     LD    E + +  + 
Sbjct: 146  FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1189 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            KLM  +T I+V  ++  +R ADKI +L QG     G+  +L
Sbjct: 206  KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 16/221 (7%)
Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069
            NVSF +       + +N+NL +  G  LA+ G +GSGK++++ L++   +   G +   G
Sbjct: 40   NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1070 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 1129
                         ++    Q   +   TI ENI   + D  E       KA      I++
Sbjct: 100  -------------RVSFCSQFSWIMPGTIKENIIGVSYD--EYRYKSVVKACQLQQDITK 144
Query: 1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALD 1188
              E   + +G+ GV LSGGQ+ R+++ARA+ K+  + LLD     LD    E + +  + 
Sbjct: 145  FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 204
Query: 1189 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            KLM  +T I+V  ++  +R ADKI +L QG     G+  +L
Sbjct: 205  KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 26/242 (10%)
Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            ++L N++ ++    + T    LNL +  G  L ++G SG GK+T + ++    +P  G +
Sbjct: 12   VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG------NEDASEIELMKAT 1118
                 D+  L  +   R I +V Q  A++   T+YENI +        +D  +  +  A 
Sbjct: 69   YFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            +       ++R P            QLSGGQ+QRVA+ARAI+  P +LL+DE  S LD  
Sbjct: 127  ELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
Query: 1179 SENLIQEALDKLMEGR--TTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1235
                ++  + KL +    TTI V H ++  +   D+IAV+ +G++ +IGS  ++  + N 
Sbjct: 176  LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235
Query: 1236 IY 1237
            ++
Sbjct: 236  VF 237

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 26/242 (10%)
Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            ++L N++ ++    + T    LNL +  G  L ++G SG GK+T + ++    +P  G +
Sbjct: 13   VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 69
Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG------NEDASEIELMKAT 1118
                 D+  L  +   R I +V Q  A++   T+YENI +        +D  +  +  A 
Sbjct: 70   YFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 127
Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            +       ++R P            QLSGGQ+QRVA+ARAI+  P +LL+DE  S LD  
Sbjct: 128  ELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 176
Query: 1179 SENLIQEALDKLMEGR--TTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1235
                ++  + KL +    TTI V H ++  +   D+IAV+ +G++ +IGS  ++  + N 
Sbjct: 177  LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 236
Query: 1236 IY 1237
            ++
Sbjct: 237  VF 238

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 114/215 (53%), Gaps = 23/215 (10%)
Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084
            + ++ +V  G  +A++G SG GK+T + ++   Y P SG +  D  D+   ++    R++
Sbjct: 20   DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYREV 77
Query: 1085 GLVQQEPALFS-TTIYENIKYG------NEDASEIELMKATKAANAHGFISRMPEGYQSH 1137
            G+V Q  AL+   T++ENI +       ++D  E  +++  +       + R P      
Sbjct: 78   GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP------ 131
Query: 1138 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRT 1195
                  QLSGGQ+QRVA+ARA++K P +LL DE  S LD     +++  +  L +  G T
Sbjct: 132  -----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 1196 TIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            ++ V H +   +  A +IAV  QGK+ + G+ +++
Sbjct: 187  SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            + +++N K+  G+ LAV G +G+GK++++ ++M   +P  G +   G             
Sbjct: 23   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 1142
            +I    Q   +   TI ENI +G     E       KA      IS+  E     +G+ G
Sbjct: 70   RISFCSQFSWIMPGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 1143 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1201
            + LSGGQ+ R+++ARA+ K+  + LLD     LD  +E  I E  + KLM  +T I+V  
Sbjct: 129  ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 1202 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            ++  ++ ADKI +L +G     G+  +L
Sbjct: 189  KMEHLKKADKILILHEGSSYFYGTFSEL 216

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 29/239 (12%)
Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I ++NVS K   +  +   +N+N+ +  G    ++G SG+GK+T + ++     P +G +
Sbjct: 4    IIVKNVS-KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1066 LIDGYDIRT---LNLRSLRRKIGLVQQEPALFST-TIYENIKYG--NEDASEIELMK--- 1116
              D   + +   L +    RKIG+V Q  AL+   T +ENI +   N   S+ E+ K   
Sbjct: 63   YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 1117 -ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
               K  + H  ++  P            +LSGGQ+QRVA+ARA++K+PS+LLLDE  S L
Sbjct: 123  EVAKILDIHHVLNHFPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1176 DT----ASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
            D     ++  L++E   +L  G T ++V+H  + I   AD++ VL +GK+ ++G  E L
Sbjct: 172  DARMRDSARALVKEVQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            + +++N K+  G+ LAV G +G+GK++++ ++M   +P  G +   G             
Sbjct: 35   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 1142
            +I    Q   +   TI ENI +G     E       KA      IS+  E     +G+ G
Sbjct: 82   RISFCSQFSWIMPGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 1143 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1201
            + LSGGQ+ R+++ARA+ K+  + LLD     LD  +E  I E  + KLM  +T I+V  
Sbjct: 141  ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 1202 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            ++  ++ ADKI +L +G     G+  +L
Sbjct: 201  KMEHLKKADKILILHEGSSYFYGTFSEL 228

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 16/208 (7%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            + +++N K+  G+ LAV G +G+GK++++ ++M   +P  G +   G             
Sbjct: 53   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 1142
            +I    Q   +   TI ENI   + D  E       KA      IS+  E     +G+ G
Sbjct: 100  RISFCSQNSWIMPGTIKENIIGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1143 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1201
            + LSGGQ+ R+++ARA+ K+  + LLD     LD  +E  I E  + KLM  +T I+V  
Sbjct: 158  ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1202 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            ++  ++ ADKI +L +G     G+  +L
Sbjct: 218  KMEHLKKADKILILHEGSSYFYGTFSEL 245

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 29/239 (12%)
Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I ++NVS K   +  +   +N+N+ +  G    ++G SG+GK+T + ++     P +G +
Sbjct: 4    IIVKNVS-KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1066 LIDGYDIRT---LNLRSLRRKIGLVQQEPALFST-TIYENIKYG--NEDASEIELMK--- 1116
              D   + +   L +    RKIG+V Q  AL+   T +ENI +   N   S+ E+ K   
Sbjct: 63   YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 1117 -ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
               K  + H  ++  P            +LSG Q+QRVA+ARA++K+PS+LLLDE  S L
Sbjct: 123  EVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1176 DT----ASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
            D     ++  L++E   +L  G T ++V+H  + I   AD++ VL +GK+ ++G  E L
Sbjct: 172  DARMRDSARALVKEVQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 16/208 (7%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            + +++N K+  G+ LAV G +G+GK++++ ++M   +P  G +   G             
Sbjct: 53   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 1142
            +I    Q   +   TI ENI   + D  E       KA      IS+  E     +G+ G
Sbjct: 100  RISFCSQNSWIMPGTIKENIIGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1143 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1201
            + LSGGQ+ R+++ARA+ K+  + LLD     LD  +E  I E  + KLM  +T I+V  
Sbjct: 158  ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1202 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            ++  ++ ADKI +L +G     G+  +L
Sbjct: 218  KMEHLKKADKILILHEGSSYFYGTFSEL 245

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
           V +++NF ++ G+  A  G +G+GK++++ M+    EP+ GKI   G             
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 510
           ++   SQ   +   +I  NI+ G    S D  R     KA      +    +     +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 569
           GG  LSGGQ+ RI++ARAV ++  + LLD     LD  +E  I +  + K+M+N+T I+V
Sbjct: 157 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
             ++  ++  D I++L  G     GT  +L
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            + +++N K+  G+ LAV G +G+GK++++ ++M   +P  G +   G             
Sbjct: 53   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 1142
            +I    Q   +   TI ENI  G     E       KA      IS+  E     +G+ G
Sbjct: 100  RISFCSQFSWIMPGTIKENIIAG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1143 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1201
            + LSGGQ+ R+++ARA+ K+  + LLD     LD  +E  I E  + KLM  +T I+V  
Sbjct: 159  ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1202 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            ++  ++ ADKI +L +G     G+  +L
Sbjct: 219  KMEHLKKADKILILHEGSSYFYGTFSEL 246

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 26/220 (11%)
Query: 1027 LNLKVSAGRSLAVV-GQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085
            LN+    GR   V+ G +G+GKS  + L+     P  G V ++G DI  L     RR IG
Sbjct: 16   LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 1086 LVQQEPALFS-TTIYENIKYGNEDASEIELMK-----ATKAANAHGFISRMPEGYQSHVG 1139
             V Q+ ALF   ++Y NI YG  +   +E  +     A K   AH  + R P        
Sbjct: 74   FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKP-------- 124
Query: 1140 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMV 1199
                +LSGG++QRVA+ARA++  P +LLLDE  SA+D  ++ ++ E L + ++    + +
Sbjct: 125  ---ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPI 180
Query: 1200 AH----RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1235
             H     +     AD++AV+  G++ E G  ++L   +NG
Sbjct: 181  LHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 16/208 (7%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            + +++N K+  G+ LAV G +G+GK++++ ++M   +P  G +   G             
Sbjct: 23   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 1142
            +I    Q   +   TI ENI   + D  E       KA      IS+  E     +G+ G
Sbjct: 70   RISFCSQFSWIMPGTIKENIIGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 1143 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1201
            + LSGGQ+ R+++ARA+ K+  + LLD     LD  +E  I E  + KLM  +T I+V  
Sbjct: 128  ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 1202 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            ++  ++ ADKI +L +G     G+  +L
Sbjct: 188  KMEHLKKADKILILHEGSSYFYGTFSEL 215

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 18/232 (7%)
Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
             +++L+NV+  +    ++ + +++NL +  G  +  VG SG GKST++ ++       SG
Sbjct: 2    ASVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAAN 1122
             + I   + R  +     R +G+V Q  AL+   ++ EN+ +G      ++L  A K   
Sbjct: 59   DLFIG--EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG------LKLAGAKKEV- 109
Query: 1123 AHGFISRMPEGYQ-SHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
             +  ++++ E  Q +H+ DR  + LSGGQ+QRVAI R ++  PS+ LLDE  S LD A  
Sbjct: 110  INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169
Query: 1181 NLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
              ++  + +L +  GRT I V H ++  +  ADKI VL  G+VA++G   +L
Sbjct: 170  VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 18/232 (7%)
Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
             +++L+NV+  +    ++ + +++NL +  G  +  VG SG GKST++ ++       SG
Sbjct: 2    ASVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAAN 1122
             + I   + R  +     R +G+V Q  AL+   ++ EN+ +G      ++L  A K   
Sbjct: 59   DLFIG--EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG------LKLAGAKKEV- 109
Query: 1123 AHGFISRMPEGYQ-SHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
             +  ++++ E  Q +H+ DR  + LSGGQ+QRVAI R ++  PS+ LLDE  S LD A  
Sbjct: 110  INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169
Query: 1181 NLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
              ++  + +L +  GRT I V H ++  +  ADKI VL  G+VA++G   +L
Sbjct: 170  VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 128/232 (55%), Gaps = 18/232 (7%)
Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
             +++L+NV+  +    ++ + +++NL +  G  +  VG SG GKST++ ++       SG
Sbjct: 2    ASVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAAN 1122
             + I   + R  +     R +G+V Q  AL+   ++ EN+ +G      ++L  A K   
Sbjct: 59   DLFIG--EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG------LKLAGAKKEV- 109
Query: 1123 AHGFISRMPEGYQ-SHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
             +  ++++ E  Q +H+ DR  + LSGGQ+QRVAI R ++  PS+ LLD+  S LD A  
Sbjct: 110  INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALR 169
Query: 1181 NLIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
              ++  + +L +  GRT I V H ++  +  ADKI VL  G+VA++G   +L
Sbjct: 170  VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            + +++N K+  G+ LAV G +G+GK++++ ++M   +P  G +   G             
Sbjct: 53   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 1142
            +I    Q   +   TI ENI +G     E       KA      IS+  E     +G+ G
Sbjct: 100  RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1143 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1201
            + LS GQ+ ++++ARA+ K+  + LLD     LD  +E  I E  + KLM  +T I+V  
Sbjct: 159  ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1202 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            ++  ++ ADKI +L +G     G+  +L
Sbjct: 219  KMEHLKKADKILILHEGSSYFYGTFSEL 246

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 27/237 (11%)
Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IEL +VSF+Y       + +++N +   G+   VVG++GSGK+T++ ++       +G +
Sbjct: 12   IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPA--LFSTTIYENIKYGNE----DASEIE--LMKA 1117
             +DG          LR+ +G V Q P+  +   T+ E++ +  E    D SE+   + K 
Sbjct: 68   FLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
             +     G  +  P           + LSGGQKQR+AIA  + ++   L LDE  S LD 
Sbjct: 125  LELVGLSGLAAADP-----------LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDP 173
Query: 1178 ASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
             S+  I + L+ L  EG+  I+V H L  + + D I  +  G +   GS E+ + +E
Sbjct: 174  PSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVERE 230

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 18/230 (7%)
Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG--YDIRTLNLRSLR 1081
             + +N+ +  G   A++G +G GKST+         P SG +L D    D     +  LR
Sbjct: 24   LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1082 RKIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMKATKAANAHGFISRMPEGYQSH 1137
              IG+V Q+P   LFS ++Y+++ +G  N    E E+ K    A     I         H
Sbjct: 84   ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE--------H 135
Query: 1138 VGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GR 1194
            + D+    LS GQK+RVAIA  ++  P +L+LDE T+ LD    + I + L ++ +  G 
Sbjct: 136  LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 1195 TTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1243
            T I+  H +  +    D + V+++G+V   G+ +++  ++  I K  +RL
Sbjct: 196  TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRL 245

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            + +++N K+  G+ LAV G +G+GK++++ ++M   +P  G +   G             
Sbjct: 53   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 1142
            +I    Q   +   TI ENI   + D  E       KA      IS+  E     +G+ G
Sbjct: 100  RISFCSQFSWIMPGTIKENIIGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 1143 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1201
            + LS GQ+ ++++ARA+ K+  + LLD     LD  +E  I E  + KLM  +T I+V  
Sbjct: 158  ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1202 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
            ++  ++ ADKI +L +G     G+  +L
Sbjct: 218  KMEHLKKADKILILHEGSSYFYGTFSEL 245

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI--RTLNL 1077
            +  +  +++L +  G  L ++G SG GK+T++  +  F  P SG + + G  I  +  NL
Sbjct: 16   NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 1078 RSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE--GY 1134
                R++G + QE  LF   T+Y NI YG  +          + A     I  M E  G 
Sbjct: 76   PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK-------GRTAQERQRIEAMLELTGI 128
Query: 1135 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-- 1192
                G    +LSGGQ+QR A+ARA+  +P ++LLDE  SALD      I+E +   +   
Sbjct: 129  SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188
Query: 1193 GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
            G++ + V+H R   ++ AD+IAV++QG++ +  S  +L R+
Sbjct: 189  GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 17/223 (7%)
Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI----RTL 1075
            D+T  ++L+L++  G  L ++G SG GK+T +  +    +P  G + I+   +    + +
Sbjct: 18   DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 1076 NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE-- 1132
             +    R +  V Q  AL+   T+Y+NI +       ++L K  K       +  + E  
Sbjct: 78   FVPPKERDVAXVFQSYALYPHXTVYDNIAF------PLKLRKVPKQ-EIDKRVREVAEXL 130
Query: 1133 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1192
            G    +  +  +LSGGQ+QRVA+ RAI++ P + L DE  S LD       +  L KL  
Sbjct: 131  GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 1193 --GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
              G TTI V H ++      D+IAV  +G++ ++G+ +++  K
Sbjct: 191  QLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYK 233

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 10/218 (4%)
Query: 1008 LRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067
            LR  + K  +R    I + ++L V  G  ++++G SGSGKST++ ++     P  G V +
Sbjct: 5    LRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 1068 DGYDIRTLNLRSL----RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 1123
            +G ++   N + L     RK+G V Q    F   I E     N     +++ K  K A  
Sbjct: 64   EGKEVDYTNEKELSLLRNRKLGFVFQ----FHYLIPELTALENVIVPMLKMGKPKKEAKE 119
Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
             G       G    +  +  +LSGG++QRVAIARA+   P +L  DE T  LD+A+   +
Sbjct: 120  RGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 1184 QEALDKLMEGRTTI-MVAHRLSTIRNADKIAVLQQGKV 1220
             +   K+ EG T+I MV H         +   ++ GKV
Sbjct: 180  MDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKV 217

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 17/223 (7%)
Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI----RTL 1075
            ++T    ++L+V  G  + ++G SG GK+T + ++    +P  G + I    +    + +
Sbjct: 15   EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 1076 NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE-- 1132
             +    R I +V Q  AL+   T+Y+NI +       ++L K  +       +  + E  
Sbjct: 75   FVPPKDRDIAMVFQSYALYPHMTVYDNIAF------PLKLRKVPRQ-EIDQRVREVAELL 127
Query: 1133 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1192
            G    +  +  +LSGGQ+QRVA+ RAI++ P + L+DE  S LD      ++  L KL  
Sbjct: 128  GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 1193 --GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1232
              G TTI V H ++  +   D+IAV+ +G + ++GS +++  K
Sbjct: 188  QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 23/225 (10%)
Query: 1025 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP----ISGTVLIDGYDIRTL---NL 1077
            + ++L +      A+VG+S SGKST+I  + +   P    +SG VL  G D+ T+    L
Sbjct: 25   DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 1078 RSLR-RKIGLVQQ--EPALFST-TIYENIKYGNEDA----SEIELMKATKAANAHGFISR 1129
            R +R ++I LV Q  + +L  T  + E+ K   E      S  EL++  KA+     +  
Sbjct: 85   RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIE--KASEKLRMVRL 142
Query: 1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE-NLIQEALD 1188
             PE     +    +QLSGG KQRV IA A+L +P +L+LDE TSALD  ++ ++IQ   +
Sbjct: 143  NPEAV---LNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKE 199
Query: 1189 KLMEGRTT-IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231
                 + T I V H ++     ADK+AV+  G + E  S  Q+ +
Sbjct: 200  LKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFK 244

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 41/243 (16%)
Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + + N+ F Y  + +  +F+ LN  ++ G  LAV+GQ+G GKST++ L++  + PI G +
Sbjct: 5    LSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 1125
                          + + IG V   P  FS+    ++         ++++   ++ + + 
Sbjct: 63   -------------EVYQSIGFV---PQFFSSPFAYSV---------LDIVLMGRSTHINT 97
Query: 1126 FISRMPEGYQ-----------SHVGDRG-VQLSGGQKQRVAIARAILKNPSILLLDEATS 1173
            F       YQ           +H+  R    LSGGQ+Q + IARAI     ++LLDE TS
Sbjct: 98   FAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 1174 ALDTASENLIQEALDKLMEGR--TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231
            ALD A+++++   L  L + +  T +   H+ + +       +L   +  + G    +L 
Sbjct: 158  ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILT 217
Query: 1232 KEN 1234
             EN
Sbjct: 218  SEN 220

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 35/232 (15%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL------- 1075
            + + ++L+  AG  ++++G SGSGKST +  +     P  G ++++G +I  +       
Sbjct: 21   VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1076 ------NLRSLRRKIGLVQQEPALFS-TTIYENIK--------YGNEDASEIELMKATKA 1120
                   LR LR ++ +V Q   L+S  T+ EN+             DA E    +A K 
Sbjct: 81   KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE----RALKY 136
Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
                G   R    Y  H       LSGGQ+QRV+IARA+   P +LL DE TSALD    
Sbjct: 137  LAKVGIDERAQGKYPVH-------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 1181 NLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
              +   + +L  EG+T ++V H +   R+ +  +  L QGK+ E G  EQ+ 
Sbjct: 190  GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 23/217 (10%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG-------HDLKSL 445
           + + ++F ++ G+ F  +GP+G+GK+T + ++  L +P+SG + + G       H+++ L
Sbjct: 30  ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 446 QLKWLREQMGLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
            + +L E+ G       + +   +A         + ++ ++E A      + + GL +  
Sbjct: 90  -ISYLPEEAGAYRNMQGIEYLRFVAG--FYASSSSEIEEMVERA------TEIAGLGEKI 140
Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564
           + +V    +  S G  +++ IARA++ NP++ +LDE TS LD  +   V++ L++     
Sbjct: 141 KDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 565 TTIVV-AHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 599
            TI+V +H +  V  + D I ++ NG +VE+GT  +L
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 106/218 (48%), Gaps = 25/218 (11%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            I + ++ ++  G    ++G +G+GK+T + ++     P SG V + G ++       +R+
Sbjct: 30   ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHEVRK 88
Query: 1083 KIGLVQQEPALFSTTIYENIKYGN-------EDASEIELM--KATKAANAHGFISRMPEG 1133
             I  + +E   +     + I+Y           +SEIE M  +AT+ A           G
Sbjct: 89   LISYLPEEAGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIA-----------G 135
Query: 1134 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-ME 1192
                + DR    S G  +++ IARA++ NP + +LDE TS LD  +   +++ L +   E
Sbjct: 136  LGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195
Query: 1193 GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1229
            G T ++ +H +  +    D+IA++  G + E G+ E+L
Sbjct: 196  GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 386 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL 445
           Y  +   +  +++  + +G+  A +GP+G+GKST++ ++     P+ G+  L G +L S 
Sbjct: 19  YHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSW 78
Query: 446 QLKWLREQMGLVSQEPAL-FATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPD 502
           Q K L     ++ Q   L F  S++  I +G+     S DR  +A +   A +    L  
Sbjct: 79  QPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDR--QALQQVMAQTDCLALAQ 136
Query: 503 -GYQTQVGEGGTQLSGGQKQRIAIARAVLR------NPKILLLDEATSALDAESELIVQR 555
             Y+         LSGG++QR+ +AR + +       P+ L LDE TSALD   +    R
Sbjct: 137 RDYRV--------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR 188
Query: 556 ALEKIMSNRTTIV--VAHRLS-TVRDVDTIMVLKNGQVVESGT 595
            L ++       V  V H L+      D IM+L  G++V  GT
Sbjct: 189 LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGT 231

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082
            +  +++L +++G  +A++G +G+GKST++ L+  +  P  G   + G ++ +   ++L R
Sbjct: 26   LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 1083 KIGLVQQEPAL-FSTTIYENIKYGNEDASEIELMKATKAANAH-GFISRMPEGYQSHVGD 1140
               +++Q   L F  ++ E I+ G       +  +A +   A    ++     Y+     
Sbjct: 86   TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV---- 141
Query: 1141 RGVQLSGGQKQRVAIARAILK------NPSILLLDEATSALDTASENLIQEALDKL--ME 1192
                LSGG++QRV +AR + +       P  L LDE TSALD   +      L +L   E
Sbjct: 142  ----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197
Query: 1193 GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEA 1251
                  V H L+     AD+I +L QGK+   G+ E++L  E         L   ++PE+
Sbjct: 198  PLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLGVSRHPES 257

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
            + ++ SV+ G     +GP+GSGKST+I+++    +   G++  +  D+ + +   L   
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 454 MGLVS--QEP-ALFATSIANNILLGK---EDASMDRVIEAAKAANAHSFVE--------- 498
            G+V   Q P  L   ++  N+L+G+    ++ ++ +            VE         
Sbjct: 82  YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRAL 557
            L   Y  + GE    LSGGQ + + I RA++ NPK++++DE  + +    +  I    L
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 558 EKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594
           E      T +++ HRL  V + +D + V+ NGQ++  G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 28/228 (12%)
Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083
             + +++ V+ G    ++G +GSGKST+I+++  F     G V  +  DI       L   
Sbjct: 23   LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 1084 IGLVQ--QEP-ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ----- 1135
             G+V+  Q P  L   T+ EN+  G       E+       N+  +   +P+  +     
Sbjct: 82   YGIVRTFQTPQPLKEMTVLENLLIG-------EICPGESPLNSLFYKKWIPKEEEMVEKA 134
Query: 1136 ---------SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA-SENLIQ 1184
                     SH+ DR   +LSGGQ + V I RA++ NP ++++DE  + +    + ++  
Sbjct: 135  FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 1185 EALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231
              L+   +G T +++ HRL  + N  D + V+  G++   G  E+ ++
Sbjct: 195  HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 29/222 (13%)
Query: 1027 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR-RKIG 1085
            L+ +V AG  L +VG +G+GKST+++  M       G++   G  +   +   L   +  
Sbjct: 19   LSGEVRAGEILHLVGPNGAGKSTLLA-RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAY 77
Query: 1086 LVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQL 1145
            L QQ+   F+T ++  +     D +  EL+     A A              +G    QL
Sbjct: 78   LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTNQL 127
Query: 1146 SGGQKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKLM-----EG 1193
            SGG+ QRV +A  +L+     NP+  +LLLD+   +LD A     Q ALDK++     +G
Sbjct: 128  SGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQQG 183
Query: 1194 RTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
               +M +H L+ T+R+A +  +L+ GK+   G  E++L   N
Sbjct: 184  LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 29/219 (13%)
Query: 1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR-RKIGLVQ 1088
            +V AG  L +VG +G+GKST+++  M       G++   G  +   +   L   +  L Q
Sbjct: 22   EVRAGEILHLVGPNGAGKSTLLA-RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 1089 QEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 1148
            Q+   F+T ++  +     D +  EL+     A A              +G    QLSGG
Sbjct: 81   QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTNQLSGG 130
Query: 1149 QKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKLM-----EGRTT 1196
            + QRV +A  +L+     NP+  +LLLD+  ++LD A     Q ALDK++     +G   
Sbjct: 131  EWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQQGLAI 186
Query: 1197 IMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
            +M +H L+ T+R+A +  +L+ GK+   G  E++L   N
Sbjct: 187  VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 42/207 (20%)
Query: 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 459
            +  G+    VGP+G GK+T + M+  + EPT GK+  D                  V+ 
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----------------TVAY 407
Query: 460 EPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEG 511
           +P          +  LL K D+S           N++ +        G+ D Y   V   
Sbjct: 408 KPQYIKAEYEGTVYELLSKIDSS---------KLNSNFYKTELLKPLGIIDLYDRNV--- 455
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVV 569
              LSGG+ QR+AIA  +LR+  I LLDE ++ LD E  L V RA+  +M  + +T +VV
Sbjct: 456 -EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTH 596
            H +  +  V   +++  G   E G H
Sbjct: 515 EHDVLMIDYVSDRLIVFEG---EPGRH 538

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 49/228 (21%)
Query: 1012 SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 1071
            SFK  V P          ++  G  + +VG +G GK+T + ++    +P  G V  D   
Sbjct: 355  SFKLEVEPG---------EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--- 402
Query: 1072 IRTLNLRSLRRKIGLVQQEPALFSTTIYE-----NIKYGNEDASEIELMKATKAANAHGF 1126
                   ++  K   ++ E   +  T+YE     +    N +  + EL+K     + +  
Sbjct: 403  ------LTVAYKPQYIKAE---YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-- 451
Query: 1127 ISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
                         DR V+ LSGG+ QRVAIA  +L++  I LLDE ++ LD      +  
Sbjct: 452  -------------DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 498
Query: 1186 ALDKLMEG--RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
            A+  LME   +T ++V H +  I   +D++ V +     E G H + L
Sbjct: 499  AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE----GEPGRHGRAL 542

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 1144 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHR 1202
            QLSGG+ QRVAIA A+L+       DE +S LD      +   + +L  EG+  ++V H 
Sbjct: 214  QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 1203 LSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1248
            L+ +     +  +  G+    G   +     NGI + L    +D+N
Sbjct: 274  LAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDEN 319

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 42/207 (20%)
Query: 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 459
            +  G+    VGP+G GK+T + M+  + EPT GK+  D                  V+ 
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----------------TVAY 421
Query: 460 EPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEG 511
           +P          +  LL K D+S           N++ +        G+ D Y   V   
Sbjct: 422 KPQYIKAEYEGTVYELLSKIDSS---------KLNSNFYKTELLKPLGIIDLYDRNV--- 469
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVV 569
              LSGG+ QR+AIA  +LR+  I LLDE ++ LD E  L V RA+  +M  + +T +VV
Sbjct: 470 -EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTH 596
            H +  +  V   +++  G   E G H
Sbjct: 529 EHDVLMIDYVSDRLIVFEG---EPGRH 552

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 49/228 (21%)
Query: 1012 SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 1071
            SFK  V P          ++  G  + +VG +G GK+T + ++    +P  G V  D   
Sbjct: 369  SFKLEVEPG---------EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--- 416
Query: 1072 IRTLNLRSLRRKIGLVQQEPALFSTTIYE-----NIKYGNEDASEIELMKATKAANAHGF 1126
                   ++  K   ++ E   +  T+YE     +    N +  + EL+K     + +  
Sbjct: 417  ------LTVAYKPQYIKAE---YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-- 465
Query: 1127 ISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
                         DR V+ LSGG+ QRVAIA  +L++  I LLDE ++ LD      +  
Sbjct: 466  -------------DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 512
Query: 1186 ALDKLMEG--RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
            A+  LME   +T ++V H +  I   +D++ V +     E G H + L
Sbjct: 513  AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE----GEPGRHGRAL 556

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 1144 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHR 1202
            QLSGG+ QRVAIA A+L+       DE +S LD      +   + +L  EG+  ++V H 
Sbjct: 228  QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 1203 LSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1248
            L+ +     +  +  G+    G   +     NGI + L    +D+N
Sbjct: 288  LAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDEN 333

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
            + ++ SV+ G     +GP+GSGKST+I+++    +   G++  +  D+ + +   L   
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 454 MGLVS--QEP-ALFATSIANNILLGK---EDASMDRVIEAAKAANAHSFVE--------- 498
            G+V   Q P  L   ++  N+L+G+    ++ ++ +            VE         
Sbjct: 82  YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRAL 557
            L   Y  + GE    LSGGQ + + I RA++ NPK++++D+  + +    +  I    L
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 558 EKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594
           E      T +++ HRL  V + +D + V+ NGQ++  G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 28/228 (12%)
Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083
             + +++ V+ G    ++G +GSGKST+I+++  F     G V  +  DI       L   
Sbjct: 23   LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 1084 IGLVQ--QEP-ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ----- 1135
             G+V+  Q P  L   T+ EN+  G  +  E  L       N+  +   +P+  +     
Sbjct: 82   YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPL-------NSLFYKKWIPKEEEMVEKA 134
Query: 1136 ---------SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA-SENLIQ 1184
                     SH+ DR   +LSGGQ + V I RA++ NP ++++D+  + +    + ++  
Sbjct: 135  FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFN 194
Query: 1185 EALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231
              L+   +G T +++ HRL  + N  D + V+  G++   G  E+ ++
Sbjct: 195  HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 22/218 (10%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
            + ++ SV  G     +GP+GSGKST+I+++    +   G++  +  D+ + +   L   
Sbjct: 23  LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 454 MGLVS--QEP-ALFATSIANNILLGK---EDASMDRVIEAAKAANAHSFVE--------- 498
            G+V   Q P  L   ++  N+L+G+    ++ ++ +            VE         
Sbjct: 82  YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRAL 557
            L   Y  + GE    LSGGQ + + I RA++ NPK++++DE  + +    +  I    L
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 558 EKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594
           E      T +++ HRL  V + +D + V+ NGQ++  G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 28/228 (12%)
Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083
             + +++ V  G    ++G +GSGKST+I+++  F     G V  +  DI       L   
Sbjct: 23   LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 1084 IGLVQ--QEP-ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ----- 1135
             G+V+  Q P  L   T+ EN+  G  +  E  L       N+  +   +P+  +     
Sbjct: 82   YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPL-------NSLFYKKWIPKEEEMVEKA 134
Query: 1136 ---------SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA-SENLIQ 1184
                     SH+ DR   +LSGGQ + V I RA++ NP ++++DE  + +    + ++  
Sbjct: 135  FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 1185 EALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231
              L+   +G T +++ HRL  + N  D + V+  G++   G  E+ ++
Sbjct: 195  HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 9/217 (4%)
Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 1080
            I   + ++LKV  G+ + ++G +G+GK+T +S +        G ++ +G DI       +
Sbjct: 19   IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 1081 RRK-IGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHV 1138
             R  I LV +   +F   T+YEN+  G  +  + E +K     +     S  P   +  +
Sbjct: 79   NRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKR----DLEWIFSLFPR-LKERL 133
Query: 1139 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIM 1198
               G  LSGG++Q +AI RA+   P +L  DE +  L     + + E + K+ +  TTI+
Sbjct: 134  KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1199 VAHR--LSTIRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
            +  +  L  ++ A    VL+ G++   G   +LL  E
Sbjct: 194  LVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 39/182 (21%)
Query: 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 459
            +  G+    VGP+G GK+T +  +  + EPT GKI  D                  V+ 
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDL----------------TVAY 351
Query: 460 EPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEG 511
           +P          +  LL K DAS           N++ +        G+ D Y  +V E 
Sbjct: 352 KPQYIKADYEGTVYELLSKIDAS---------KLNSNFYKTELLKPLGIIDLYDREVNE- 401
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVV 569
              LSGG+ QR+AIA  +LR+  I LLDE ++ LD E  L V RA+  +   + +T +VV
Sbjct: 402 ---LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 570 AH 571
            H
Sbjct: 459 EH 460

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 36/237 (15%)
Query: 1031 VSAGRSLAVVGQSGSGKSTVISLVMRFYDP-ISGTVLIDGYD--IRTLNLRSLRR----- 1082
            V  G  + +VG +G+GKST + ++     P + G    D +D  IR      L+      
Sbjct: 44   VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDN--DSWDGVIRAFRGNELQNYFEKL 101
Query: 1083 ---------KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEG 1133
                     K   V   P      + E +K  +E     E++KA +  N           
Sbjct: 102  KNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN----------- 150
Query: 1134 YQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-M 1191
                V +R +Q LSGG+ QRVAIA A+L+N +    DE +S LD         A+ +L  
Sbjct: 151  ----VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 1192 EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1248
            EG++ ++V H L+ +     I  +  G+    G   Q     NGI + L    +D+N
Sbjct: 207  EGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDEN 263

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 1027 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--GTVLIDGYDIRTLNLRSLR-RK 1083
            L+ +V AG  L +VG +G+GKST   L+ R     S  G++   G  +   +   L   +
Sbjct: 19   LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1084 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 1143
              L QQ+   F+T ++  +     D +  EL+     A A              +G    
Sbjct: 76   AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 1144 QLSGGQKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKLM----- 1191
            QLSGG+ QRV +A  +L+     NP+  +LLLDE  ++LD A     Q ALDK++     
Sbjct: 126  QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALCQ 181
Query: 1192 EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
            +G   +  +H L+ T+R+A +  +L+ GK    G  E++L   N
Sbjct: 182  QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 1027 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--GTVLIDGYDIRTLNLRSLR-RK 1083
            L+ +V AG  L +VG +G+GKST   L+ R     S  G++   G  +   +   L   +
Sbjct: 19   LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1084 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 1143
              L QQ+   F+T ++  +     D +  EL+     A A              +G    
Sbjct: 76   AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 1144 QLSGGQKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKLM----- 1191
            QLSGG+ QRV +A  +L+     NP+  +LLLDE  ++LD A     Q ALDK++     
Sbjct: 126  QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALSQ 181
Query: 1192 EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
            +G   +  +H L+ T+R+A +  +L+ GK    G  E++L   N
Sbjct: 182  QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 18/228 (7%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQL-KW 449
           + + +N  V  G+  A +GP+G+GKST+  ++     Y    G+ILLDG ++  L   + 
Sbjct: 18  ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 450 LREQMGLVSQEPA-LFATSIANNILLGKEDASMDRVIEAA----KAANAHSFVEGLPDGY 504
            R+ + L  Q P  +   +IAN + L  + A + R +  A    K   A   ++      
Sbjct: 78  ARKGLFLAFQYPVEVPGVTIANFLRLALQ-AKLGREVGVAEFWTKVKKALELLDWDESYL 136
Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-N 563
              + EG    SGG+K+R  I + ++  P   +LDE  S LD ++  +V R +  +   N
Sbjct: 137 SRYLNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPN 193
Query: 564 RTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG---THVDLISKGGEY 606
              +V+ H  R+      D + V+ +G+VV +G     ++L +KG E+
Sbjct: 194 FGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEW 241

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 19/232 (8%)
Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTLNLRS 1079
            TI + +NL V  G   A++G +G+GKST+  ++     Y    G +L+DG +I  L+   
Sbjct: 17   TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76
Query: 1080 LRRK-IGLVQQEPALFSTTIYENI-------KYGNEDASEIELMKATKAANAHGFISRMP 1131
              RK + L  Q P         N        K G E        K  KA      +    
Sbjct: 77   RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALE----LLDWD 132
Query: 1132 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM 1191
            E Y S   + G   SGG+K+R  I + ++  P+  +LDE  S LD  +  ++   ++ + 
Sbjct: 133  ESYLSRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 1192 E---GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240
                G   I    R+      DK+ V+  G+V   G  E  L  E   Y+ L
Sbjct: 191  GPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWL 242

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 23/219 (10%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQ---- 446
           +   L+  V  G+  A +GP+GSGKST+ + +  +  YE T G +   G DL +L     
Sbjct: 35  ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 447 --------LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 498
                    ++  E  G+ +Q    F  +  N +   +   ++DR           + ++
Sbjct: 95  AGEGIFMAFQYPVEIPGVSNQ---FFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 151
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
            +P+   T+    G   SGG+K+R  I +  +  P++ +LDE+ S LD ++  +V   + 
Sbjct: 152 -MPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 208
Query: 559 KIMS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 594
            +    R+ I+V H  R+      D + VL  G++V+SG
Sbjct: 209 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 21/222 (9%)
Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTLNL 1077
            D  I   L+L V  G   A++G +GSGKST+ + +     Y+   GTV   G D+  L+ 
Sbjct: 32   DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 1078 RSLRRK-IGLVQQEPA--------LFSTTIYENIK--YGNEDASEIELMKATKAANAHGF 1126
                 + I +  Q P          F  T    ++   G E     +     +   A   
Sbjct: 92   EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA--- 148
Query: 1127 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1186
            + +MPE   +   + G   SGG+K+R  I +  +  P + +LDE+ S LD  +  ++ + 
Sbjct: 149  LLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 1187 LDKLMEG-RTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGS 1225
            ++ L +G R+ I+V H  R+      D + VL QG++ + G 
Sbjct: 207  VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQ---- 446
           +   L+  V  G+  A +GP+GSGKST+ + +  +  YE T G +   G DL +L     
Sbjct: 16  ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 447 --------LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 498
                    ++  E  G+ +Q    F  +  N +   +   ++DR  +          + 
Sbjct: 76  AGEGIFMAFQYPVEIPGVSNQ---FFLQTALNAVRSYRGQETLDR-FDFQDLMEEKIALL 131
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
            +P+   T+    G   SGG+K+R  I +  +  P++ +LDE+ S LD ++  +V   + 
Sbjct: 132 KMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 189
Query: 559 KIMS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 594
            +    R+ I+V H  R+      D + VL  G++V+SG
Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 21/222 (9%)
Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTLNL 1077
            D  I   L+L V  G   A++G +GSGKST+ + +     Y+   GTV   G D+  L+ 
Sbjct: 13   DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 1078 RSLRRK-IGLVQQEPA--------LFSTTIYENIK--YGNEDASEIELMKATKAANAHGF 1126
                 + I +  Q P          F  T    ++   G E     +     +   A   
Sbjct: 73   EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA--- 129
Query: 1127 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1186
            + +MPE   +   + G   SGG+K+R  I +  +  P + +LDE+ S LD  +  ++ + 
Sbjct: 130  LLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 187
Query: 1187 LDKLMEG-RTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGS 1225
            ++ L +G R+ I+V H  R+      D + VL QG++ + G 
Sbjct: 188  VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 38/236 (16%)
Query: 1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL--RS 1079
            TI + ++ +++ G    + G +G+GK+T+++++  +    SGTV + G     +     +
Sbjct: 35   TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 1080 LRRKIGLVQQE-----------------PALFSTTIYENIKYGNEDASEIELMKATKAAN 1122
            +R+ IG V                     A  S  +Y++I     + +   L     +A 
Sbjct: 95   VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1182
            A  +I     GY          LS G+KQRV IARA+   P +L+LDE  + LD  +   
Sbjct: 155  AQQYI-----GY----------LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARES 199
Query: 1183 IQEALDKLMEGRTT---IMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKEN 1234
            +   LD L +   T   I V H +  I  N  KI +L+ G+  + G+ E +L  EN
Sbjct: 200  LLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSEN 255

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 97/185 (52%), Gaps = 22/185 (11%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK--WL 450
           V E +  +++ G    F GP+G GK+T++  +    +P  G+I+ +G  +  ++ K  +L
Sbjct: 24  VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL 83
Query: 451 REQMGL---VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507
            E++ +   +S E  L A +    + + K +     +++A ++      VE L    + +
Sbjct: 84  PEEIIVPRKISVEDYLKAVASLYGVKVNKNE-----IMDALES------VEVL--DLKKK 130
Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTI 567
           +GE    LS G  +R+ +A  +L N +I +LD+   A+D +S+  V +++ +I+  +  +
Sbjct: 131 LGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 568 VVAHR 572
           +++ R
Sbjct: 187 IISSR 191

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 95/203 (46%), Gaps = 28/203 (13%)
Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+R++S  Y    D  + E + + +  G  +   G +G GK+T++  +  +  P+ G +
Sbjct: 11   LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQE---PALFSTTIYENIK---YGNEDASEIELMKATK 1119
            + +G  I       ++ KI  + +E   P   S   Y       YG +  ++ E+M A +
Sbjct: 67   IYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKNEIMDALE 120
Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
            +        ++ E            LS G  +RV +A  +L N  I +LD+   A+D  S
Sbjct: 121  SVEVLDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 1180 ENLIQEALDKLMEGRTTIMVAHR 1202
            ++ + +++ ++++ +  ++++ R
Sbjct: 169  KHKVLKSILEILKEKGIVIISSR 191

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 31/191 (16%)
Query: 1024 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083
             EN+NL+V+ G  + ++G +GSGK+T++  +     P SG + I+G ++R      +R  
Sbjct: 21   LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVR-----KIRNY 73
Query: 1084 IGLVQQEPALFSTTI--------YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
            I      P  +   +        YE +K  + D   +E++KA K               +
Sbjct: 74   IRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLF-LEMLKALKLG-------------E 119
Query: 1136 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1195
              +  +  +LS GQ   V  + A+   P I+ LDE    +D A  ++I   + +   G+ 
Sbjct: 120  EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKE 177
Query: 1196 TIMVAHRLSTI 1206
             I+V H L  +
Sbjct: 178  GILVTHELDML 188

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1201
            LSGG K ++A+ARA+L+N  ILLLDE T+ LDT +   +   L+    G T+I ++H
Sbjct: 549  LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1201
            LSGG K ++A+ARA+L+N  ILLLDE T+ LDT +   +   L+    G T+I ++H
Sbjct: 549  LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 1145 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1201
            LSGG K ++A+ARA+L+N  ILLLDE T+ LDT +   +   L+    G T+I ++H
Sbjct: 543  LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 597

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 38/200 (19%)
Query: 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457
           N     G+    +GP+G GK+T   ++        G+I  D   +          +  ++
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARIL-------VGEITADEGSVTP--------EKQIL 332
Query: 458 SQEPALFATSIANNILLGKEDASMDRVI-------EAAKAANAHSFVEGLPDGYQTQVGE 510
           S +P     +    +    E+AS D +        E  K  N H  +E            
Sbjct: 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLES----------- 381
Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIV 568
               LSGG+ Q++ IA  + +   + +LD+ +S LD E   IV +A++++   R   T +
Sbjct: 382 NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441
Query: 569 VAHRLSTVRD--VDTIMVLK 586
           + H LS + D   D I+V K
Sbjct: 442 IDHDLS-IHDYIADRIIVFK 460

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573
           LSGG  QR+ +A ++LR   + + D+ +S LD    + + +A+ +++ N+  IVV H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197

>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPK---ILLLDEATSALDAESELIVQRALEKIM-S 562
           ++G+  T+LSGG+ QRI +A  + R+ +   + +LDE T+ L       +QR L K++ +
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 563 NRTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGTHVDLISKGGEYAA 608
             T I V H++  V   D ++ +        G++V  GT  ++    G   A
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTA 834

>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 1138 VGDRGVQLSGGQKQRVAIARAILKNPS---ILLLDEATSALDTASENLIQEALDKLME-G 1193
            +G     LSGG+ QR+ +A  + K  +   + +LDE T  L       + E L +L++ G
Sbjct: 799  LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 1194 RTTIMVAHRLSTIRNADKIAVL------QQGKVAEIGSHEQLLR 1231
             T I++ H L  I+NAD I  L      + G +   G+ E++ +
Sbjct: 859  NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902

>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK---ILLLDEATSALDAESELIVQRALEK 559
           GY  ++G+  T LSGG+ QR+ +A  + R      + +LDE T+ L  +    +   L +
Sbjct: 835 GY-XKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 560 IMSN-RTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 595
           ++ N  T +V+ H L  ++  D I+ L      + GQ+V  GT
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936

>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK---ILLLDEATSALDAESELIVQRALEK 559
           GY  ++G+  T LSGG+ QR+ +A  + R      + +LDE T+ L  +    +   L +
Sbjct: 835 GYM-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 560 IMSN-RTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 595
           ++ N  T +V+ H L  ++  D I+ L      + GQ+V  GT
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1253
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	0.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	0.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	0.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	0.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	0.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-170
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-167
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-167
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-162
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-164
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-155
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-152
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-149
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-148
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-144
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-137
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-137
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-137
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-130
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	1e-130
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	1e-117
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-130
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-122
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-114
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-104
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	4e-65
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	2e-63
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	1e-50
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	1e-47
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	3e-49
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	1e-44
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	4e-48
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	5e-44
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-45
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	8e-44
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-45
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	4e-38
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	4e-45
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	2e-38
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	3e-43
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	6e-41
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	6e-43
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	3e-39
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	4e-37
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	5e-34
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	5e-36
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	5e-30
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	7e-36
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	7e-31
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-35
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	8e-32
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	2e-35
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	1e-27
1b0u_A	262	Histidine permease; ABC transporter, transport pro	4e-35
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-33
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	6e-35
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	2e-28
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	7e-35
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-33
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-31
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-30
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	1e-34
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	2e-29
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	6e-34
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	1e-30
1sgw_A	214	Putative ABC transporter; structural genomics, P p	7e-34
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-33
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	1e-33
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	7e-29
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-33
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	3e-33
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	7e-33
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-30
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	7e-30
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-29
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-32
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	9e-32
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-29
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-29
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-31
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	9e-30
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-29
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	3e-27
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	5e-31
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-29
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	9e-26
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	3e-24
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	5e-23
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	2e-21
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	8e-23
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	2e-21
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	5e-22
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	2e-20
1g6h_A	257	High-affinity branched-chain amino acid transport	6e-21
1g6h_A	257	High-affinity branched-chain amino acid transport	3e-16
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	4e-19
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	2e-17
1ji0_A	240	ABC transporter; ATP binding protein, structural g	5e-16
1ji0_A	240	ABC transporter; ATP binding protein, structural g	2e-15
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	9e-16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-14
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-05
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	3e-12
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	2e-07
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	4e-12
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	2e-10
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	1e-06
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	3e-08
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	8e-06
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	2e-06
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	3e-05

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 1577 bits (4085), Expect = 0.0
 Identities = 472/1261 (37%), Positives = 734/1261 (58%), Gaps = 34/1261 (2%)

Query: 16   DDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGR 75
            + + + K  ++    KK + S L++F  A  +D + M +G+L A IHG  LP+  ++FG 
Sbjct: 14   NFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGD 73

Query: 76   MIDSLG---------------HLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWM 120
            M DS                    +   +L   ++ +A Y   +G   L+ A+I V+FW 
Sbjct: 74   MTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWC 133

Query: 121  QTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRY 180
                RQ  ++R K+  +++ +++ +FD       +   ++ D   + + IGDK G   + 
Sbjct: 134  LAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQA 192

Query: 181  LSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEE 240
            ++ FF GF +GFT  W+LTL+ LA+ P++ ++ G +   +S+ ++K   AY +AG VAEE
Sbjct: 193  MATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEE 252

Query: 241  IISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWY 300
            +++ +R V AF G+ K +E Y+++L+EA + G K  +   I +G  + L++ ++AL  WY
Sbjct: 253  VLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY 312

Query: 301  AGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSS 360
               LV   + + G+  T   +V+   F++GQA+PN+ A A  + AA  +  II     S 
Sbjct: 313  GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKP-SI 371

Query: 361  ERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKST 419
            +     G     + G +EF  + F+YPSR  + + + LN  V +G+T A VG SG GKST
Sbjct: 372  DSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431

Query: 420  IISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDA 479
             + ++QRLY+P  G + +DG D++++ +++LRE +G+VSQEP LFAT+IA NI  G+ED 
Sbjct: 432  TVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDV 491

Query: 480  SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 539
            +MD + +A K ANA+ F+  LP  + T VGE G QLSGGQKQRIAIARA++RNPKILLLD
Sbjct: 492  TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD 551

Query: 540  EATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
            EATSALD ESE +VQ AL+K    RTTIV+AHRLSTVR+ D I     G +VE G H +L
Sbjct: 552  EATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611

Query: 600  ISKGGEYAALVNLQSSEHLSNPSSI------------CYSGSSRYSSFRDFPSSRRYDVE 647
            + + G Y  LV  Q++ +     +               S  S  S  R   + +     
Sbjct: 612  MREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGP 671

Query: 648  FESSKRRELQSSDQSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHI 707
             +  ++   + +     P  S W +LKLN+ EWPY V+G   AI+ G   P F++  + +
Sbjct: 672  HDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731

Query: 708  LTAFYSP-HDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 766
            +  F +       ++  +  +L+F+ L +++   + LQ + +   GE LT R+R  +F +
Sbjct: 732  VGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791

Query: 767  ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 826
            +L  ++ WFD  +N TG L + LA DA  V+ A   RL++I QN+A   T  +I+ I  W
Sbjct: 792  MLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851

Query: 827  RLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKR 886
            +L  ++ A +P++  A V E   L G      +    +  +A EAI N RTV +   E++
Sbjct: 852  QLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQK 911

Query: 887  ISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIM 946
                +A  L  P + A+ + H+ G  +  +Q +   SYA    + + L+ Q+   F +++
Sbjct: 912  FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVL 971

Query: 947  KSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNI 1006
              F  ++  A+AV +  + APD  K + +   +  I+ +   I        +   ++GN+
Sbjct: 972  LVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNV 1031

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066
            +   V F YP RP I + + L+L+V  G++LA+VG SG GKSTV+ L+ RFYDP++G+V 
Sbjct: 1032 QFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091

Query: 1067 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG--NEDASEIELMKATKAANAH 1124
            +DG +I+ LN++ LR ++G+V QEP LF  +I ENI YG  +   S  E+++A K AN H
Sbjct: 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH 1151

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
             FI  +P+ Y + VGD+G QLSGGQKQR+AIARA+++ P ILLLDEATSALDT SE ++Q
Sbjct: 1152 QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211

Query: 1185 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            EALDK  EGRT I++AHRLSTI+NAD I V+Q GKV E G+H+QLL +  GIY  ++ +Q
Sbjct: 1212 EALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQ 1270

Query: 1245 Q 1245
             
Sbjct: 1271 A 1271

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  688 bits (1778), Expect = 0.0
 Identities = 225/623 (36%), Positives = 346/623 (55%), Gaps = 21/623 (3%)

Query: 649  ESSKRRELQSSDQSFAPSPSIWELLKL-NAAEWPYAVLGSVGAILAGMEAPLFAL----- 702
             S   ++ +   +   P+ S+  + +     +  Y ++G++ AI+ G+  PL  L     
Sbjct: 15   FSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDM 74

Query: 703  ------------GITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL 750
                          T++  A      ++++  +   A  + G+    + V  +Q  F+ L
Sbjct: 75   TDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCL 134

Query: 751  MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQN 810
                   ++R   F AI++ EIGWFD   ++ G L + L  D + +   + D++ +  Q 
Sbjct: 135  AAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKIGMFFQA 192

Query: 811  VALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVARE 870
            +A     F+I F   W+L  V+ A  P+L  +       L  F      AY++A +VA E
Sbjct: 193  MATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEE 252

Query: 871  AIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWY 930
             +A IRTV A+G +K+   ++ + L +  +  + +   +    G + LL   SYAL  WY
Sbjct: 253  VLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY 312

Query: 931  ASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQ 990
             + L+  K  + G ++  F  ++I A +V +             A   VF I+  K +I 
Sbjct: 313  GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSID 372

Query: 991  PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 1050
                +  +   I+GN+E +N+ F YP R ++ I + LNLKV +G+++A+VG SG GKST 
Sbjct: 373  SFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTT 432

Query: 1051 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 1110
            + L+ R YDP+ G V IDG DIRT+N+R LR  IG+V QEP LF+TTI ENI+YG ED +
Sbjct: 433  VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVT 492

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
              E+ KA K ANA+ FI ++P  + + VG+RG QLSGGQKQR+AIARA+++NP ILLLDE
Sbjct: 493  MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDE 552

Query: 1171 ATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1230
            ATSALDT SE ++Q ALDK  EGRTTI++AHRLST+RNAD IA    G + E G+H++L+
Sbjct: 553  ATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM 612

Query: 1231 RKENGIYKQLIRLQQDKNPEAME 1253
             +E GIY +L+  Q   N   + 
Sbjct: 613  -REKGIYFKLVMTQTAGNEIELG 634

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  684 bits (1767), Expect = 0.0
 Identities = 210/608 (34%), Positives = 326/608 (53%), Gaps = 7/608 (1%)

Query: 16   DDNLIPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGR 75
             D       ++         SF  +       +     +G   A I+G   P F ++F +
Sbjct: 672  HDQDRKLSTKEALDEDVPPASFWRILKLN-STEWPYFVVGIFCAIINGGLQPAFSVIFSK 730

Query: 76   MIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYL 135
            ++         P       +  +L  + LG+++ ++ ++    + + GE  T RLR    
Sbjct: 731  VVGVFT-NGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVF 789

Query: 136  QSVLKKDMSFFDTEARDS-NIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS 194
            +S+L++D+S+FD     +  +   +++DA  V+ A G +     + ++    G  +    
Sbjct: 790  KSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIY 849

Query: 195  VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGE 254
             WQLTLL LA+VP+IA+AG      +S  + K +     +GK+A E I   R V +   E
Sbjct: 850  GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTRE 909

Query: 255  AKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGK 314
             K    Y+ SL+   +   K     GI    T  +++ ++A    +   LV         
Sbjct: 910  QKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN 969

Query: 315  AFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLA 374
                   ++F   A+GQ +      AK   +A++II II++     +     G+    L 
Sbjct: 970  VLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP-EIDSYSTQGLKPNMLE 1028

Query: 375  GQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG 433
            G ++FS V F YP+RP   V + L+  V  G+T A VG SG GKST++ +++R Y+P +G
Sbjct: 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088

Query: 434  KILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED--ASMDRVIEAAKAA 491
             + LDG ++K L ++WLR Q+G+VSQEP LF  SIA NI  G      S + ++ AAK A
Sbjct: 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEA 1148

Query: 492  NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
            N H F++ LPD Y T+VG+ GTQLSGGQKQRIAIARA++R P ILLLDEATSALD ESE 
Sbjct: 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208

Query: 552  IVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN 611
            +VQ AL+K    RT IV+AHRLST+++ D I+V++NG+V E GTH  L+++ G Y ++V+
Sbjct: 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVS 1268

Query: 612  LQSSEHLS 619
            +Q+    S
Sbjct: 1269 VQAGAKRS 1276

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  515 bits (1330), Expect = e-170
 Identities = 171/567 (30%), Positives = 296/567 (52%), Gaps = 13/567 (2%)

Query: 680  WPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIP 739
                ++  +  IL           +  +L   +   D     V+  + L+ +GL ++   
Sbjct: 24   KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS---VLLWMPLVVIGLMILRGI 80

Query: 740  VYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSA 799
               +  Y  + +   +   +R  +F  ++   + +FD  + +TG L+S +  D+  V S+
Sbjct: 81   TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASS 138

Query: 800  LADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNR 859
             +  L  +V+  A  +  F++ F  SW+L+ ++    P++  A        +    +   
Sbjct: 139  SSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQN 198

Query: 860  AYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLL 919
               + T+ A + +   + V  +G ++  + +F    ++   Q +     S     + QL+
Sbjct: 199  TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 258

Query: 920  SLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLA-LAPDIVKGSQALGP 978
            +  + A  L+ AS          G I       +I  +   ++L  +     +G  A   
Sbjct: 259  ASLALAFVLYAASFPSVMDSLTAGTIT-VVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317

Query: 979  VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 1038
            +F IL  +      D   + +    G++E RNV+F YP R ++    N+NLK+ AG+++A
Sbjct: 318  LFAILDSEQEK---DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVA 373

Query: 1039 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 1098
            +VG+SGSGKST+ SL+ RFYD   G +L+DG+D+R   L SLR ++ LV Q   LF+ T+
Sbjct: 374  LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433

Query: 1099 YENIKYGNEDA-SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157
              NI Y   +  S  ++ +A + A A  FI++M  G  + +G+ GV LSGGQ+QR+AIAR
Sbjct: 434  ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493

Query: 1158 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1217
            A+L++  IL+LDEATSALDT SE  IQ ALD+L + RT++++AHRLSTI  AD+I V++ 
Sbjct: 494  ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVED 553

Query: 1218 GKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            G + E G+H +LL + +G+Y QL ++Q
Sbjct: 554  GIIVERGTHSELLAQ-HGVYAQLHKMQ 579

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  507 bits (1308), Expect = e-167
 Identities = 165/575 (28%), Positives = 278/575 (48%), Gaps = 27/575 (4%)

Query: 51  LMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALV 110
            + +  +   ++ A+      L   ++D              +     L  + L ++ L+
Sbjct: 26  GLIVAGIALILNAASDTFMLSLLKPLLD----------DGFGKTDRSVLLWMPLVVIGLM 75

Query: 111 SAWIGVAFWMQT------GERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAI 164
               G+  ++ +        +    +R +    ++   ++FFD +     ++  I+ D+ 
Sbjct: 76  -ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSE 133

Query: 165 LVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLS 224
            V  +        +R  +     F + F   WQL+++ + + P++++A    +    ++S
Sbjct: 134 QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSIS 193

Query: 225 EKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVG 284
           +  +   G+    AE+++   + V  F G+    + +     +   QG K   A  I   
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDP 253

Query: 285 LTYGLLFCAWALLLWYAGILVRHGDTNGGK--AFTTIINVIFSGFALGQAAPNLAAIAKG 342
           +   +   A A +L+ A           G      + +  +     L       A   +G
Sbjct: 254 IIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMR--PLKSLTNVNAQFQRG 311

Query: 343 KAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVD 402
            AA   + +I+       E        + +  G +EF  V F YP R      N+N  + 
Sbjct: 312 MAACQTLFAILDSEQEKDEGK----RVIDRATGDLEFRNVTFTYPGREVPALRNINLKIP 367

Query: 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPA 462
           AGKT A VG SGSGKSTI S++ R Y+   G IL+DGHDL+   L  LR Q+ LVSQ   
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 427

Query: 463 LFATSIANNILLGKEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521
           LF  ++ANNI   + +  S +++ EAA+ A A  F+  + +G  T +GE G  LSGGQ+Q
Sbjct: 428 LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 487

Query: 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDT 581
           RIAIARA+LR+  IL+LDEATSALD ESE  +Q AL+++  NRT++V+AHRLST+   D 
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADE 547

Query: 582 IMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSE 616
           I+V+++G +VE GTH +L+++ G YA L  +Q  +
Sbjct: 548 IVVVEDGIIVERGTHSELLAQHGVYAQLHKMQFGQ 582

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  509 bits (1313), Expect = e-167
 Identities = 161/567 (28%), Positives = 285/567 (50%), Gaps = 13/567 (2%)

Query: 680  WPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIP 739
                V+ ++  ++           +  +L   +   +S     +  +  + +GL  V   
Sbjct: 24   KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESN---FLRILPFMILGLMFVRGL 80

Query: 740  VYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSA 799
                  Y  + +  ++  ++R  +F+  +   + +FD  + +TG L+S +  D+  V  A
Sbjct: 81   SGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGA 138

Query: 800  LADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNR 859
             +  L  IV+  A  +    + F  SW+L+ V+    P++  A        +    +   
Sbjct: 139  TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQT 198

Query: 860  AYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLL 919
            A    TS A + +   + V +YG ++    +F    +   +Q +           V Q++
Sbjct: 199  AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258

Query: 920  SLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLA-LAPDIVKGSQALGP 978
            +  +    L+ ASV   +     G         +   +   + L  +  +  +G  A   
Sbjct: 259  ASLALFAVLFLASVDSIRAELTPGTFT-VVFSAMFGLMRPLKALTSVTSEFQRGMAACQT 317

Query: 979  VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 1038
            +FG++  +T     D    E   + G +++++V+F Y  + +     +++  +  G+++A
Sbjct: 318  LFGLMDLETER---DNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVA 373

Query: 1039 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 1098
            +VG+SGSGKST+ +L  RFYD  SG++ +DG+D+R   L +LRR   LV Q   LF+ TI
Sbjct: 374  LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433

Query: 1099 YENIKYGNE-DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157
              NI Y  E + +  ++ +A + A+A  FI  MP+G  + +G+ G  LSGGQ+QRVAIAR
Sbjct: 434  ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493

Query: 1158 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1217
            A+L++  +L+LDEATSALDT SE  IQ ALD+L + +T +++AHRLSTI  AD+I V+ +
Sbjct: 494  ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDE 553

Query: 1218 GKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            G++ E G H  LL + +G Y QL R+Q
Sbjct: 554  GEIIERGRHADLLAQ-DGAYAQLHRIQ 579

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  496 bits (1280), Expect = e-162
 Identities = 157/575 (27%), Positives = 273/575 (47%), Gaps = 27/575 (4%)

Query: 51  LMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALV 110
            + + ++   I+ A       L   ++D                  + L ++   ++ L+
Sbjct: 26  GLVVSTIALVINAAADTYMISLLKPLLD----------EGFGNAESNFLRILPFMILGLM 75

Query: 111 SAWIGVAFWMQT------GERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAI 164
               G++ +  +            ++R +     +   + FFD E     ++  I+ D+ 
Sbjct: 76  -FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSE 133

Query: 165 LVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLS 224
            V  A        +R  +       + F + WQL+L+ + V P++A A    +     +S
Sbjct: 134 QVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKIS 193

Query: 225 EKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVG 284
              + A G     AE+++   + V ++ G+    + +        +Q  K   A+ I   
Sbjct: 194 RNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADP 253

Query: 285 LTYGLLFCAWALLLWYAGILVRHGDTNGGK--AFTTIINVIFSGFALGQAAPNLAAIAKG 342
           +   +   A   +L+ A +     +   G      + +  +     L       +   +G
Sbjct: 254 VIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMR--PLKALTSVTSEFQRG 311

Query: 343 KAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVD 402
            AA   +  ++           +      ++ G+++  +V F Y  +      +++FS+ 
Sbjct: 312 MAACQTLFGLMDL----ETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIP 367

Query: 403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPA 462
            GKT A VG SGSGKSTI ++  R Y+  SG I LDGHD++  +L  LR    LVSQ   
Sbjct: 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH 427

Query: 463 LFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQ 521
           LF  +IANNI    E + + +++ +AA+ A+A  F+E +P G  T +GE GT LSGGQ+Q
Sbjct: 428 LFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQ 487

Query: 522 RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDT 581
           R+AIARA+LR+  +L+LDEATSALD ESE  +Q AL+++  N+T +V+AHRLST+   D 
Sbjct: 488 RVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADE 547

Query: 582 IMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSE 616
           I+V+  G+++E G H DL+++ G YA L  +Q  E
Sbjct: 548 ILVVDEGEIIERGRHADLLAQDGAYAQLHRIQFGE 582

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  501 bits (1293), Expect = e-164
 Identities = 166/571 (29%), Positives = 280/571 (49%), Gaps = 13/571 (2%)

Query: 680  WPYAVLGSVGAILAGMEAPLFAL----GITHILTAFYSPHDSQIKRVVDQVALIFVGLAV 735
                    +  I+      L  L     I  ++       D ++  +   + +      +
Sbjct: 13   KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72

Query: 736  VTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATL 795
            V  P+  ++ Y        +   +R  +++ + +    ++    N  G +IS +  D   
Sbjct: 73   VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQ 130

Query: 796  VRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLFLKGFGG 855
             +  +   L  I  +    + A  I F L  +L        P  I         L+    
Sbjct: 131  TKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTR 190

Query: 856  DYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRG-HISGFGYG 914
            + ++A +       E +  I  V ++ IE   +  F  + +       L+    + + + 
Sbjct: 191  ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFD-KKNTNFLTRALKHTRWNAYSFA 249

Query: 915  VSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALA-VAETLALAPDIVKGS 973
                ++     + +   + L        G +  +F+  +      +   +A    + +  
Sbjct: 250  AINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLVASFTTLTQSF 308

Query: 974  QALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSA 1033
             ++  VF ++     I  +   ++ +   +G I++ +VSF+Y    +  I +++NL +  
Sbjct: 309  ASMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEK 366

Query: 1034 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPAL 1093
            G ++A VG SG GKST+I+L+ RFYD  SG +LIDG++I+     SLR +IGLVQQ+  L
Sbjct: 367  GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426

Query: 1094 FSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153
            FS T+ ENI  G   A++ E+++A K ANAH FI  +P+GY + VG+RGV+LSGGQKQR+
Sbjct: 427  FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486

Query: 1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIA 1213
            +IAR  L NP IL+LDEATSALD  SE++IQEALD L + RTT++VAHRLSTI +ADKI 
Sbjct: 487  SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV 546

Query: 1214 VLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            V++ G + E G+H +L+ K  G Y+ L  +Q
Sbjct: 547  VIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  477 bits (1231), Expect = e-155
 Identities = 167/568 (29%), Positives = 271/568 (47%), Gaps = 11/568 (1%)

Query: 51  LMFLGSLGAFIHGATLPVFFILFGRMIDSL--GHLSSHPHRLTSRISEHALYLVYLGLVA 108
            +F   +   I      +  +L    ID +   H  +   ++        + L    +V 
Sbjct: 15  RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74

Query: 109 LVSAWIGVAFWMQ-TGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQ 167
               +I   +  Q T  +    +R K    +      F+    +   +I  + +D    +
Sbjct: 75  PPIEFI-RQYLAQWTSNKILYDIRKKLYNHLQALSARFYA-NNQVGQVISRVINDVEQTK 132

Query: 168 DAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKG 227
           D I     +         +  ++ F    +LTL  L + P   +    +   +  L+ + 
Sbjct: 133 DFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRER 192

Query: 228 EAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTY 287
             A  E      E +  +  V +F  E    +++       L +  K             
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252

Query: 288 GLLFCAWALLLWYAGILVRHGDTNGGK--AFTTIINVIFSGFALGQAAPNLAAIAKGKAA 345
            +      +++     L   G    G   AF   + ++F    L +   +   + +  A+
Sbjct: 253 TVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFG--PLRRLVASFTTLTQSFAS 310

Query: 346 AANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGK 405
              +  +I E+             +    G+I+   V F Y      + +++N S++ G+
Sbjct: 311 MDRVFQLIDEDYDIKNGV--GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGE 368

Query: 406 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA 465
           T AFVG SG GKST+I+++ R Y+ TSG+IL+DGH++K      LR Q+GLV Q+  LF+
Sbjct: 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 428

Query: 466 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525
            ++  NILLG+  A+ + V+EAAK ANAH F+  LP GY T+VGE G +LSGGQKQR++I
Sbjct: 429 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488

Query: 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 585
           AR  L NP IL+LDEATSALD ESE I+Q AL+ +  +RTT++VAHRLST+   D I+V+
Sbjct: 489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVI 548

Query: 586 KNGQVVESGTHVDLISKGGEYAALVNLQ 613
           +NG +VE+GTH +LI+K G Y  L ++Q
Sbjct: 549 ENGHIVETGTHRELIAKQGAYEHLYSIQ 576

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  457 bits (1179), Expect = e-152
 Identities = 108/259 (41%), Positives = 157/259 (60%), Gaps = 4/259 (1%)

Query: 363 PGDDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTII 421
           P    +    + G ++F +V FAYP+ P   V + L F++  GK  A VGP+GSGKST+ 
Sbjct: 3   PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62

Query: 422 SMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDAS 480
           +++Q LY+PT GK+LLDG  L      +L  Q+  V QEP LF  S   NI  G     +
Sbjct: 63  ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT 122

Query: 481 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
           M+ +   A  + AH F+ G P GY T+VGE G QLSGGQ+Q +A+ARA++R P++L+LD 
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN 182

Query: 541 ATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVD 598
           ATSALDA ++L VQR L +    ++RT +++  +LS       I+ LK G V E GTH+ 
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQ 242

Query: 599 LISKGGEYAALVNLQSSEH 617
           L+ +GG Y ++V   ++  
Sbjct: 243 LMERGGCYRSMVEALAAPS 261

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  449 bits (1158), Expect = e-149
 Identities = 95/268 (35%), Positives = 148/268 (55%), Gaps = 5/268 (1%)

Query: 989  IQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKS 1048
            + P   +      +KG ++ ++VSF YP  P++ + + L   +  G+  A+VG +GSGKS
Sbjct: 1    MSPLSGSLA-PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59

Query: 1049 TVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN-E 1107
            TV +L+   Y P  G VL+DG  +   +   L  ++  V QEP LF  +  ENI YG   
Sbjct: 60   TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119

Query: 1108 DASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 1167
              +  E+      + AH FIS  P+GY + VG+ G QLSGGQ+Q VA+ARA+++ P +L+
Sbjct: 120  TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179

Query: 1168 LDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1225
            LD ATSALD  ++  +Q  L +  E   RT +++  +LS    A  I  L++G V E G+
Sbjct: 180  LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239

Query: 1226 HEQLLRKENGIYKQLIRLQQDKNPEAME 1253
            H QL+ +  G Y+ ++      +  A  
Sbjct: 240  HLQLMER-GGCYRSMVEALAAPSDAAAH 266

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  445 bits (1148), Expect = e-148
 Identities = 112/246 (45%), Positives = 165/246 (67%), Gaps = 1/246 (0%)

Query: 1001 EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060
                +I  RN+ F+Y       I +N+NL +  G  + +VG+SGSGKST+  L+ RFY P
Sbjct: 3    HHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61

Query: 1061 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKA 1120
             +G VLIDG+D+   +   LRR++G+V Q+  L + +I +NI   N   S  +++ A K 
Sbjct: 62   ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121

Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
            A AH FIS + EGY + VG++G  LSGGQ+QR+AIARA++ NP IL+ DEATSALD  SE
Sbjct: 122  AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181

Query: 1181 NLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240
            ++I   + K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL +   +Y  L
Sbjct: 182  HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241

Query: 1241 IRLQQD 1246
             +LQ D
Sbjct: 242  YQLQSD 247

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  435 bits (1122), Expect = e-144
 Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 1/241 (0%)

Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
             I F  + F Y     ++ +N+N S+  G+    VG SGSGKST+  ++QR Y P +G+
Sbjct: 6   HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65

Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 494
           +L+DGHDL      WLR Q+G+V Q+  L   SI +NI L     S+++VI AAK A AH
Sbjct: 66  VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
            F+  L +GY T VGE G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ 
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185

Query: 555 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQ 613
           R + KI   RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+    Y+ L  LQ
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245

Query: 614 S 614
           S
Sbjct: 246 S 246

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  416 bits (1073), Expect = e-137
 Identities = 102/240 (42%), Positives = 158/240 (65%), Gaps = 4/240 (1%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +  R+V F Y     I    +++ +      +A  G SG GKST+ SL+ RFY P +G +
Sbjct: 2    LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAH 1124
             IDG  I  ++L + R +IG V Q+ A+ + TI EN+ YG E D ++ +L +    A A 
Sbjct: 60   TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
             F+  MP+   + VG+RGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ SE+++Q
Sbjct: 120  SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 1185 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            +ALD LM+GRTT+++AHRLSTI +ADKI  +++G++   G H +L+   + +Y + +  Q
Sbjct: 180  KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  415 bits (1070), Expect = e-137
 Identities = 108/242 (44%), Positives = 158/242 (65%), Gaps = 2/242 (0%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +    V FAY      +  +++F        AF GPSG GKSTI S+++R Y+PT+G+I 
Sbjct: 2   LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHS 495
           +DG  + ++ L+  R Q+G VSQ+ A+ A +I  N+  G E D + + + +    A A S
Sbjct: 61  IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
           FVE +PD   T+VGE G ++SGGQ+QR+AIARA LRNPKIL+LDEAT++LD+ESE +VQ+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180

Query: 556 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 615
           AL+ +M  RTT+V+AHRLST+ D D I  ++ GQ+  SG H +L++    YA  V+ Q +
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQLT 240

Query: 616 EH 617
             
Sbjct: 241 VG 242

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  417 bits (1074), Expect = e-137
 Identities = 106/257 (41%), Positives = 170/257 (66%), Gaps = 2/257 (0%)

Query: 992  DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVI 1051
                +    +   NIE  +V+F YP + +    +++N  + +G + A+VG +GSGKST+ 
Sbjct: 4    SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63

Query: 1052 SLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASE 1111
             L+ RFYD   G + I G ++   N  S+R  IG+V Q+  LF+ TI  NI YG  DA++
Sbjct: 64   KLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
             E++KATK+A  + FI  +P+ + + VG++G++LSGG++QR+AIAR +LK+P I++ DEA
Sbjct: 123  EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182

Query: 1172 TSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231
            TS+LD+ +E L Q+A++ L + RT I++AHRLSTI +A+ I +L +GK+ E G+H+ LL+
Sbjct: 183  TSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242

Query: 1232 KENGIYKQLIRLQQDKN 1248
              NG Y ++  +Q   N
Sbjct: 243  L-NGEYAEMWNMQSGGN 258

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  399 bits (1027), Expect = e-130
 Identities = 109/254 (42%), Positives = 165/254 (64%), Gaps = 2/254 (0%)

Query: 365 DDGITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 423
                  K    IEFS+V F+YP +  H   +++NF + +G T A VG +GSGKSTI  +
Sbjct: 6   SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65

Query: 424 VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDR 483
           + R Y+   G I + G ++       +R  +G+V Q+  LF  +I  NIL GK DA+ + 
Sbjct: 66  LYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEE 124

Query: 484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
           VI+A K+A  + F+E LP  + T VG  G +LSGG++QRIAIAR +L++PKI++ DEATS
Sbjct: 125 VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATS 184

Query: 544 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603
           +LD+++E + Q+A+E +  NRT I++AHRLST+   ++I++L  G++VE GTH DL+   
Sbjct: 185 SLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244

Query: 604 GEYAALVNLQSSEH 617
           GEYA + N+QS  +
Sbjct: 245 GEYAEMWNMQSGGN 258

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  411 bits (1058), Expect = e-130
 Identities = 166/595 (27%), Positives = 292/595 (49%), Gaps = 51/595 (8%)

Query: 669  IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD-SQIKRVVDQVA 727
            +   L+ +        +    + + G+ +P     I   +   + P     + R +  + 
Sbjct: 28   LLGYLRPHTFTLIMVFVFVTVSSILGVLSPYL---IGKTIDVVFVPRRFDLLPRYMLILG 84

Query: 728  LIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLIS 787
             I+   +++      LQ      + + +  R+R  +F  +    +G+FD      G +IS
Sbjct: 85   TIYALTSLLF----WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIIS 138

Query: 788  TLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQ 847
             +  D   + + L + +      +     A ++ F ++  L+ V  + +PL +       
Sbjct: 139  RVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV------- 191

Query: 848  LFLKGFGGDYNRAYSRATSVAR--------EAIANIRTVAAYGIEKRISIQFASELSQPN 899
              +        R Y                E I+ +  +  +  E++   +F   +++  
Sbjct: 192  -LITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFD-RVNESL 249

Query: 900  KQALLRG-HISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLI----- 953
            ++   +    SG    +  +++   +AL   +   L  +     G I  +F+        
Sbjct: 250  RKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIA-TFIGYSRQFTR 308

Query: 954  -ITALA-VAETL--ALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELR 1009
             +  L+     +  ALA        +   +F IL      + DDP + E+ E++G IE +
Sbjct: 309  PLNELSNQFNMIQMALA--------SAERIFEIL--DLEEEKDDPDAVELREVRGEIEFK 358

Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069
            NV F Y       + +++   +  G+ +A+VG +GSGK+T+++L+MRFYD   G +L+DG
Sbjct: 359  NVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416

Query: 1070 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 1129
             DIR +   SLR  IG+V Q+  LFSTT+ EN+KYGN  A++ E+ +A K  ++  FI  
Sbjct: 417  IDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKH 476

Query: 1130 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK 1189
            +PEGY++ + D G  LS GQ+Q +AI RA L NP IL+LDEATS +DT +E  IQ A+ K
Sbjct: 477  LPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536

Query: 1190 LMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            LMEG+T+I++AHRL+TI+NAD I VL+ G++ E+G H++L++K  G Y +L   Q
Sbjct: 537  LMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQ 590

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  376 bits (968), Expect = e-117
 Identities = 170/597 (28%), Positives = 292/597 (48%), Gaps = 37/597 (6%)

Query: 30  SKKQSGSFLSLFA--AADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHP 87
            K  + +   L           +++F+    + I G   P    L G+ ID +       
Sbjct: 18  LKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSP---YLIGKTIDVV-----FV 69

Query: 88  HRLTSRISEHALYLVYLGLVALVSAWIGVAFWMQT-GERQTARLRLKYLQSVLKKDMSFF 146
            R    +  + L L  +  +  +  W+     M T  +    RLR +  + + +  + FF
Sbjct: 70  PRRFDLLPRYMLILGTIYALTSLLFWLQ-GKIMLTLSQDVVFRLRKELFEKLQRVPVGFF 128

Query: 147 DTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFA--VG-----FTSVWQLT 199
           D      +II  + +D   + + +G+        + QFF G     G     F     L+
Sbjct: 129 DRTPH-GDIISRVINDVDNINNVLGNS-------IIQFFSGIVTLAGAVIMMFRVNVILS 180

Query: 200 LLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE 259
           L+TL++VPL  +     +        + +   G+   + EE IS +  +  F  E K +E
Sbjct: 181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEME 240

Query: 260 SYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGK--AFT 317
            +    +   K G K+ +  G+   L   +    +AL+  + G L        G    F 
Sbjct: 241 KFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFI 300

Query: 318 TIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQI 377
                 F+   L + +     I    A+A  I  I+       E+   D + L ++ G+I
Sbjct: 301 GYSR-QFTR-PLNELSNQFNMIQMALASAERIFEILDL---EEEKDDPDAVELREVRGEI 355

Query: 378 EFSEVCFAY-PSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           EF  V F+Y   +P  V +++ F +  G+  A VGP+GSGK+TI++++ R Y+   G+IL
Sbjct: 356 EFKNVWFSYDKKKP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL 413

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DG D++ ++   LR  +G+V Q+  LF+T++  N+  G   A+ + + EAAK  ++  F
Sbjct: 414 VDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHF 473

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           ++ LP+GY+T + + G  LS GQ+Q +AI RA L NPKIL+LDEATS +D ++E  +Q A
Sbjct: 474 IKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAA 533

Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
           + K+M  +T+I++AHRL+T+++ D I+VL++G++VE G H +LI K G Y  L   Q
Sbjct: 534 MWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  400 bits (1029), Expect = e-130
 Identities = 128/273 (46%), Positives = 178/273 (65%), Gaps = 4/273 (1%)

Query: 979  VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 1038
            +F +L  +T ++ D P +  +   KG IE  NV F Y         ++++  V  G++LA
Sbjct: 28   MFDLLKEETEVK-DLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQTLA 84

Query: 1039 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 1098
            +VG SG+GKST++ L+ RFYD  SG + IDG DI  +   SLR  IG+V Q+  LF+ TI
Sbjct: 85   LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144

Query: 1099 YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158
             +NI+YG   A   E+  A +AA  H  I   PEGY++ VG+RG++LSGG+KQRVAIAR 
Sbjct: 145  ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204

Query: 1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQG 1218
            ILK P I+LLDEATSALDT++E  IQ +L K+   RTTI+VAHRLST+ NAD+I V++ G
Sbjct: 205  ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDG 264

Query: 1219 KVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEA 1251
             + E G HE LL +  G+Y  + +LQQ +   +
Sbjct: 265  CIVERGRHEALLSR-GGVYADMWQLQQGQEETS 296

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  380 bits (977), Expect = e-122
 Identities = 124/279 (44%), Positives = 177/279 (63%), Gaps = 5/279 (1%)

Query: 339 IAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAY-PSRPHMVFENL 397
            +       N+  ++KE +   + P      L    G+IEF  V F+Y   R     +++
Sbjct: 18  GSHMFIDMENMFDLLKEETEVKDLP--GAGPLRFQKGRIEFENVHFSYADGRE--TLQDV 73

Query: 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457
           +F+V  G+T A VGPSG+GKSTI+ ++ R Y+ +SG I +DG D+  +    LR  +G+V
Sbjct: 74  SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133

Query: 458 SQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG 517
            Q+  LF  +IA+NI  G+  A  D V  AA+AA  H  +   P+GY+TQVGE G +LSG
Sbjct: 134 PQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193

Query: 518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR 577
           G+KQR+AIAR +L+ P I+LLDEATSALD  +E  +Q +L K+ +NRTTIVVAHRLSTV 
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253

Query: 578 DVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSE 616
           + D I+V+K+G +VE G H  L+S+GG YA +  LQ  +
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQ 292

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score =  368 bits (946), Expect = e-114
 Identities = 156/532 (29%), Positives = 272/532 (51%), Gaps = 23/532 (4%)

Query: 725  QVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAI--LSNEIGWFDLDENNT 782
            +  ++ + +A++     +    F +   ++  A +R  +F  +   S      +++  +T
Sbjct: 64   KTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSIS----NVNRFHT 119

Query: 783  GLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGA 842
              LI+ L  D T +++ +   L I+V+   L V   V+A  ++ +L++V+   +P ++  
Sbjct: 120  SSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLL 179

Query: 843  FV-----AEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQ 897
            FV        LF K        +      V RE +  +R V A+  E+  +  F      
Sbjct: 180  FVWLTKKGNPLFRKIQ-----ESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANES 234

Query: 898  PNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMK--SFMVLIIT 955
              +  +    +  F   +   +        LW+  VL++      G IM   ++++ I+ 
Sbjct: 235  LRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF 294

Query: 956  ALAVAETLALAPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKY 1015
            +L +   +     IV+ S +   V  +L  K AI+ +   +  +  ++G++   NV F+Y
Sbjct: 295  SLMMIGNILNF--IVRASASAKRVLEVLNEKPAIE-EADNALALPNVEGSVSFENVEFRY 351

Query: 1016 PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL 1075
                D  +   +N  V  G  +AV+G++GSGKST+++L+ R  DP  G V +D  D+RT+
Sbjct: 352  FENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410

Query: 1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
             L+ LR  I  V QE  LFS TI EN+K+G EDA++ E+++A K A  H FI  +PEGY 
Sbjct: 411  KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYD 470

Query: 1136 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1195
            S V   G   SGGQKQR++IARA++K P +L+LD+ TS++D  +E  I + L +  +G T
Sbjct: 471  SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCT 530

Query: 1196 TIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDK 1247
            T ++  ++ T   ADKI VL +GKVA  G+H++LL +    Y+++   Q   
Sbjct: 531  TFIITQKIPTALLADKILVLHEGKVAGFGTHKELL-EHCKPYREIYESQFGN 581

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score =  342 bits (880), Expect = e-104
 Identities = 147/535 (27%), Positives = 261/535 (48%), Gaps = 21/535 (3%)

Query: 91  TSRISEHALYLVYLGLVALVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDMSF----- 145
            S + +  + ++ + L+  V       F     +   A LR    + + +K +SF     
Sbjct: 59  FSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLR----RDLFRKVLSFSISNV 114

Query: 146 --FDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTL 203
             F T    S++I  +++D   +Q+ +       +R    F  G  +  +   +L+ + +
Sbjct: 115 NRFHT----SSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLI 170

Query: 204 AVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSH 263
            ++P I +     T   + L  K + +  E  +V  E +  VR V AF  E    E++  
Sbjct: 171 FLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRK 230

Query: 264 SLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGK--AFTTIIN 321
           + +   +    +       + L   ++      +LW+ G+LVR+     G   A+T  + 
Sbjct: 231 ANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLM 290

Query: 322 VIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSE 381
            I   F+L      L  I +  A+A  ++ ++ E    +    D+ + LP + G + F  
Sbjct: 291 QIM--FSLMMIGNILNFIVRASASAKRVLEVLNE--KPAIEEADNALALPNVEGSVSFEN 346

Query: 382 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD 441
           V F Y      V   +NFSV  G   A +G +GSGKST+++++ RL +P  G++ +D  D
Sbjct: 347 VEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406

Query: 442 LKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLP 501
           +++++LK LR  +  V QE  LF+ +I  N+  G+EDA+ D ++EAAK A  H F+  LP
Sbjct: 407 VRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLP 466

Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
           +GY ++V  GG   SGGQKQR++IARA+++ PK+L+LD+ TS++D  +E  +   L++  
Sbjct: 467 EGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT 526

Query: 562 SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSE 616
              TT ++  ++ T    D I+VL  G+V   GTH +L+     Y  +   Q   
Sbjct: 527 KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFGN 581

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score =  225 bits (575), Expect = 4e-65
 Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 5/252 (1%)

Query: 1003 KGNIELRNVSFKYPVRPDIT-IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
             G + +++++ KY        I EN++  +S G+ + ++G++GSGKST++S  +R  +  
Sbjct: 17   GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73

Query: 1062 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA 1121
             G + IDG    ++ L   R+  G++ Q+  +FS T  +N+   N   S+ E+ K     
Sbjct: 74   EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEV 132

Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
                 I + P      + D G  LS G KQ + +AR++L    ILLLDE ++ LD  +  
Sbjct: 133  GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192

Query: 1182 LIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241
            +I+  L +     T I+   R+  +   D+  V+++ KV +  S  +L       +    
Sbjct: 193  IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252

Query: 1242 RLQQDKNPEAME 1253
                  N   ++
Sbjct: 253  IGSPKMNFLPVK 264

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score =  219 bits (561), Expect = 2e-63
 Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 10/297 (3%)

Query: 375 GQIEFSEVCFAYPSRPHM--VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
           GQ+   ++   Y        + EN++FS+  G+    +G +GSGKST++S   RL     
Sbjct: 18  GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-E 74

Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
           G+I +DG    S+ L+  R+  G++ Q+  +F+ +   N L      S   + + A    
Sbjct: 75  GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEVG 133

Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
             S +E  P      + +GG  LS G KQ + +AR+VL   KILLLDE ++ LD  +  I
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193

Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS-KGGEYAALVN 611
           ++R L++  ++ T I+   R+  + + D  +V++  +V +  + ++L       + A   
Sbjct: 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF- 252

Query: 612 LQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPS 668
           + S +   N   +  + ++      + P   R  V      R     ++ S    P 
Sbjct: 253 IGSPK--MNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPE 307

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score =  177 bits (452), Expect = 1e-50
 Identities = 61/241 (25%), Positives = 111/241 (46%), Gaps = 25/241 (10%)

Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
            ++    V   +      V +++NF ++ G+  A  G +G+GK++++ M+    EP+ GK
Sbjct: 5   TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64

Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD-----RVIEAAK 489
           I   G             ++   SQ   +   +I  NI+ G      D      VI+A  
Sbjct: 65  IKHSG-------------RISFCSQFSWIMPGTIKENIIFGVS---YDEYRYRSVIKAC- 107

Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE- 548
                       +     +GEGG  LSGGQ+ RI++ARAV ++  + LLD     LD   
Sbjct: 108 -QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165

Query: 549 SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 608
            + I +  + K+M+N+T I+V  ++  ++  D I++L  G     GT  +L +   ++++
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 225

Query: 609 L 609
            
Sbjct: 226 K 226

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score =  169 bits (430), Expect = 1e-47
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 18/241 (7%)

Query: 1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 1062
               + + NV+  +       + +++N K+  G+ LAV G +G+GK++++ ++M   +P  
Sbjct: 4    TTEVVMENVTAFWEEGGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62

Query: 1063 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAA 1121
            G +   G             +I    Q   +   TI ENI +G   D          KA 
Sbjct: 63   GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYR--SVIKAC 107

Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA-SE 1180
                 IS+  E     +G+ G+ LSGGQ+ R+++ARA+ K+  + LLD     LD    +
Sbjct: 108  QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167

Query: 1181 NLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240
             + +  + KLM  +T I+V  ++  ++ ADKI +L +G     G+  +L   +     +L
Sbjct: 168  EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227

Query: 1241 I 1241
            +
Sbjct: 228  M 228

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score =  174 bits (443), Expect = 3e-49
 Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 35/255 (13%)

Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
             I      F +          + FS+  G   A VG  G GKS+++S +    +   G 
Sbjct: 2   NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61

Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD-----RVIEAAK 489
           + + G              +  V Q+  +   S+  NIL G +   ++      VI+A  
Sbjct: 62  VAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQ---LEEPYYRSVIQAC- 104

Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
            A      E LP G +T++GE G  LSGGQKQR+++ARAV  N  I L D+  SA+DA  
Sbjct: 105 -ALLPDL-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH- 161

Query: 550 ELIVQRAL-------EKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602
              V + +       + ++ N+T I+V H +S +  VD I+V+  G++ E G++ +L+++
Sbjct: 162 ---VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218

Query: 603 GGEYAALVNLQSSEH 617
            G +A  +   +S H
Sbjct: 219 DGAFAEFLRTYASHH 233

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score =  160 bits (408), Expect = 1e-44
 Identities = 69/243 (28%), Positives = 129/243 (53%), Gaps = 21/243 (8%)

Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
             +I +RN +F +      T+   +   +  G  +AVVGQ G GKS+++S ++   D + G
Sbjct: 2    NSITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAAN 1122
             V I G              +  V Q+  + + ++ ENI +G + +          +A  
Sbjct: 61   HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYR--SVIQACA 105

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASEN 1181
                +  +P G ++ +G++GV LSGGQKQRV++ARA+  N  I L D+  SA+D    ++
Sbjct: 106  LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165

Query: 1182 LIQEAL--DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ 1239
            + +  +    +++ +T I+V H +S +   D I V+  GK++E+GS+++LL + +G + +
Sbjct: 166  IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAE 224

Query: 1240 LIR 1242
             +R
Sbjct: 225  FLR 227

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score =  172 bits (438), Expect = 4e-48
 Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 33/293 (11%)

Query: 358 HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGK 417
               +  ++          + FS            V +++NF ++ G+  A  G +G+GK
Sbjct: 22  FEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFKIERGQLLAVAGSTGAGK 77

Query: 418 STIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE 477
           ++++ M+    EP+ GKI   G             ++   SQ   +   +I  NI+ G  
Sbjct: 78  TSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS 123

Query: 478 DASMD-----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532
               D      VI+A              +     +GEGG  LSGGQ+ RI++ARAV ++
Sbjct: 124 ---YDEYRYRSVIKAC--QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177

Query: 533 PKILLLDEATSALDAE-SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVV 591
             + LLD     LD    + I +  + K+M+N+T I+V  ++  ++  D I++L  G   
Sbjct: 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSY 237

Query: 592 ESGTHVDLISKGGEYAALVNLQSSEHLSNP---SSICYSGSSRYSSFRDFPSS 641
             GT  +L +   ++++ +    S    +    +SI      R+S   D P S
Sbjct: 238 FYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLEGDAPVS 290

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score =  160 bits (408), Expect = 5e-44
 Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 23/265 (8%)

Query: 991  PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 1050
              +  +++ +    ++   N S          + +++N K+  G+ LAV G +G+GK+++
Sbjct: 26   KQNNNNRKTSNGDDSLSFSNFSLLGT-----PVLKDINFKIERGQLLAVAGSTGAGKTSL 80

Query: 1051 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DA 1109
            + ++M   +P  G +   G             +I    Q   +   TI ENI  G   D 
Sbjct: 81   LMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI-IGVSYDE 126

Query: 1110 SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 1169
                     KA      IS+  E     +G+ G+ LSGGQ+ R+++ARA+ K+  + LLD
Sbjct: 127  YRYR--SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 184

Query: 1170 EATSALDTA-SENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQ 1228
                 LD    + + +  + KLM  +T I+V  ++  ++ ADKI +L +G     G+  +
Sbjct: 185  SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244

Query: 1229 LLRKENGIYKQLIRLQQDKNPEAME 1253
            L         +L+         A  
Sbjct: 245  LQNLRPDFSSKLMGCDSFDQFSAER 269

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  164 bits (417), Expect = 1e-45
 Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 32/248 (12%)

Query: 1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I+L+NV      +  +    EN+NL+V+ G  + ++G +GSGK+T++  +     P SG 
Sbjct: 2    IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS--TTIYENIKYG----NEDASEI-ELMKA 1117
            + I+G ++R      +R  I      P  +    T+ + +         D     E++KA
Sbjct: 60   IFINGMEVR-----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
             K       + R              +LS GQ   V  + A+   P I+ LDE    +D 
Sbjct: 115  LKLGE--EILRRKLY-----------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161

Query: 1178 ASENLIQEALDKLMEGRTTIMVAHRLST-IRNADKIAVLQQG-KVAEIGSHEQLLRKENG 1235
            A  ++I   + +   G+  I+V H L       +  A    G ++    S  +LL     
Sbjct: 162  ARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIV 219

Query: 1236 IYKQLIRL 1243
              ++   L
Sbjct: 220  EGERNDAL 227

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  159 bits (404), Expect = 8e-44
 Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 27/234 (11%)

Query: 377 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           I+   V      + +     EN+N  V+ G+    +GP+GSGK+T++  +  L  P SG 
Sbjct: 2   IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59

Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFA--TSIANNILLGKE--DASMDRVIEAAKA 490
           I ++G +++ +     R  +   +  P  +    ++ + + L +E      D  +E  KA
Sbjct: 60  IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114

Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
                    L +    +      +LS GQ   +  + A+   P+I+ LDE    +DA   
Sbjct: 115 L-------KLGEEILRRKL---YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164

Query: 551 LIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVL-KNGQVVESGTHVDLISK 602
            ++ R +++    +  I+V H L  +    +         ++    +  +L+  
Sbjct: 165 HVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  164 bits (417), Expect = 2e-45
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 32/246 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +++  +++ Y         + +N+ +  G   A++G +G GKST+         P SG +
Sbjct: 8    LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65

Query: 1066 LIDGYDIRT--LNLRSLRRKIGLVQQEPA--LFSTTIYENIKYG--NEDASEIEL----M 1115
            L D   I      +  LR  IG+V Q+P   LFS ++Y+++ +G  N    E E+     
Sbjct: 66   LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125

Query: 1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
             A K         +       H       LS GQK+RVAIA  ++  P +L+LDE T+ L
Sbjct: 126  NALKRTGIEHLKDKPT-----H------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174

Query: 1176 DTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGKVA------EIGSH 1226
            D    + I + L ++ +  G T I+  H +  +    D + V+++G+V       E+ + 
Sbjct: 175  DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234

Query: 1227 EQLLRK 1232
            ++++RK
Sbjct: 235  KEVIRK 240

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  143 bits (363), Expect = 4e-38
 Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 27/233 (11%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           ++  E+ + Y        + +N ++  G+  A +G +G GKST+      + +P+SG+IL
Sbjct: 8   LKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66

Query: 437 LDGHDLKSLQ--LKWLREQMGLVSQEPA--LFATSIAN-------NILLGKEDASMDRVI 485
            D   +   +  +  LRE +G+V Q+P   LF+ S+         N+ L +++    RV 
Sbjct: 67  FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIR-KRVD 125

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
            A K        +                LS GQK+R+AIA  ++  PK+L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174

Query: 546 DAESELIVQRALEKIM--SNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGT 595
           D      + + L ++      T I+  H +  V    D + V+K G+V+  G 
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  163 bits (414), Expect = 4e-45
 Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 19/236 (8%)

Query: 1006 IELRNVSFKYPVRP--DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            IE+ NVS  +      +    EN++L ++ G  L V G +GSGKST++ +V    +P SG
Sbjct: 3    IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPA--LFSTTIYENIKYG--NEDASEIELMKATK 1119
             VL DG          +RR IG+  Q P    F+  +++ + +   N       +    K
Sbjct: 63   DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119

Query: 1120 AANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            A    G      + ++    DR    LSGG+K+RVAIA  I+  P IL+LDE    LD  
Sbjct: 120  AMEFVGL---DFDSFK----DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172

Query: 1179 SENLIQEALDKLME-GRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRK 1232
             +  +   ++K    G+T I+++H + T+  + D++ VL++GK    G+  + L K
Sbjct: 173  GKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  143 bits (364), Expect = 2e-38
 Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 28/234 (11%)

Query: 376 QIEFSEVCFAYPSRP---HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
           +IE   V   +           EN++  ++ G+     G +GSGKST++ +V  L EPTS
Sbjct: 2   RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61

Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPA--LFATSIANNIL-----LGKEDASMDRVI 485
           G +L DG   K      +R  +G+  Q P    FA  + + +         +   +  V 
Sbjct: 62  GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118

Query: 486 EAAKAAN--AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
           +A +       SF + +P             LSGG+K+R+AIA  ++  P IL+LDE   
Sbjct: 119 KAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLV 167

Query: 544 ALDAESELIVQRALEKI-MSNRTTIVVAHRLSTV-RDVDTIMVLKNGQVVESGT 595
            LD E +  + R +EK     +T I+++H + TV   VD ++VL+ G+ V  GT
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score =  160 bits (408), Expect = 3e-43
 Identities = 81/251 (32%), Positives = 128/251 (50%), Gaps = 24/251 (9%)

Query: 1006 IELRNVSFKYPVR-PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I+L N++  +      I    N++L V AG+   V+G SG+GKST+I  V     P  G+
Sbjct: 25   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84

Query: 1065 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKA 1120
            VL+DG ++ TL+   L   RR+IG++ Q   L S+ T++ N+         +EL    K 
Sbjct: 85   VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP------LELDNTPKD 138

Query: 1121 ANAHGFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
                    R+ E     G           LSGGQKQRVAIARA+  NP +LL D+ATSAL
Sbjct: 139  EVK----RRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSAL 194

Query: 1176 DTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
            D A+   I E L  +    G T +++ H +  ++   D +AV+  G++ E  +  ++   
Sbjct: 195  DPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254

Query: 1233 -ENGIYKQLIR 1242
             +  + ++ I+
Sbjct: 255  PKTPLAQKFIQ 265

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score =  154 bits (391), Expect = 6e-41
 Identities = 89/286 (31%), Positives = 140/286 (48%), Gaps = 28/286 (9%)

Query: 377 IEFSEVC--FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           I+ S +   F   +R      N++  V AG+ +  +G SG+GKST+I  V  L  PT G 
Sbjct: 25  IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84

Query: 435 ILLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKA 490
           +L+DG +L +L   +L   R Q+G++ Q   L ++ ++  N+ L  E  +  +     + 
Sbjct: 85  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144

Query: 491 ANAHSFVEGLPD---GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
               S V GL D    Y +        LSGGQKQR+AIARA+  NPK+LL D+ATSALD 
Sbjct: 145 TELLSLV-GLGDKHDSYPSN-------LSGGQKQRVAIARALASNPKVLLCDQATSALDP 196

Query: 548 ESELIVQRALEKIMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
            +   +   L+ I  NR    T +++ H +  V+ + D + V+ NG+++E  T  ++ S 
Sbjct: 197 ATTRSILELLKDI--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254

Query: 603 GGEYAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEF 648
                A   +QS+ HL  P         R  +           +EF
Sbjct: 255 PKTPLAQKFIQSTLHLDIPEDY----QERLQAEPFTDCVPMLRLEF 296

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  157 bits (399), Expect = 6e-43
 Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 29/246 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I+L  +          TI + ++ +++ G    + G +G+GK+T+++++  +    SGTV
Sbjct: 22   IQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78

Query: 1066 LIDGYDI--RTLNLRSLRRKIGLVQQEPAL---FSTTIYENI---KYGN----EDASEIE 1113
             + G        +  ++R+ IG V             + + +    + +    +D  +  
Sbjct: 79   NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138

Query: 1114 LMKATKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEAT 1172
              +A +     G          S    + +  LS G+KQRV IARA++  P +L+LDE  
Sbjct: 139  RNEAHQLLKLVGM---------SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189

Query: 1173 SALDTASENLIQEALDKLME---GRTTIMVAHRLSTIRNA-DKIAVLQQGKVAEIGSHEQ 1228
            + LD  +   +   LD L +       I V H +  I     KI +L+ G+  + G+ E 
Sbjct: 190  AGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED 249

Query: 1229 LLRKEN 1234
            +L  EN
Sbjct: 250  ILTSEN 255

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  146 bits (371), Expect = 3e-39
 Identities = 52/238 (21%), Positives = 112/238 (47%), Gaps = 18/238 (7%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I+  ++      +   + + +++ +  G  +   G +G+GK+T+++++      TSG + 
Sbjct: 22  IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79

Query: 437 LDGHDLKSL--QLKWLREQMGLVSQEPAL---FATSIANNILLGKEDAS-MDRVIEAAKA 490
           L G     +    + +R+ +G VS            + + ++ G   +  + + I+    
Sbjct: 80  LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139

Query: 491 ANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
             AH  ++  G+    Q  +G     LS G+KQR+ IARA++  P++L+LDE  + LD  
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIG----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI 195

Query: 549 SELIVQRALEKIMSNRTT---IVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602
           +   +   L+ +  +  T   I V H +  +      I++LK+GQ ++ G   D+++ 
Sbjct: 196 ARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score =  140 bits (354), Expect = 4e-37
 Identities = 76/220 (34%), Positives = 110/220 (50%), Gaps = 33/220 (15%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQLKWL 450
           V + +N  +  G+    +GPSGSGKST +  +  L +   G+I++DG +L  K   L  +
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98

Query: 451 REQMGLVSQEPALFA-TSIANNILLG--------KEDASMDRVIEAAKAANAHSFVE--G 499
           RE++G+V Q   LF   ++ NNI L         +E A           A A   ++  G
Sbjct: 99  REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKA----------EAKAMELLDKVG 148

Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE--SE-LIVQRA 556
           L D    +       LSGGQ QR+AIARA+   PKI+L DE TSALD E   E L V + 
Sbjct: 149 LKD----KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204

Query: 557 LEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           L       T +VV H +   R+V D ++ +  G ++E G 
Sbjct: 205 LAN--EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score =  130 bits (330), Expect = 5e-34
 Identities = 71/237 (29%), Positives = 115/237 (48%), Gaps = 26/237 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I++  +   +     + + + +N+ +  G  + V+G SGSGKST +  +    D   G +
Sbjct: 25   IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81

Query: 1066 LIDGYDI--RTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKA-- 1120
            +IDG ++  +  NL  +R ++G+V Q   LF   T+  NI         +++ K  +   
Sbjct: 82   IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKA 136

Query: 1121 -ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
             A A   + ++  G +         LSGGQ QRVAIARA+   P I+L DE TSALD   
Sbjct: 137  EAKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD--P 192

Query: 1180 ENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230
            E ++ E L  +M     EG T ++V H +   R   D++  +  G + E G  E L 
Sbjct: 193  E-MVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  136 bits (345), Expect = 5e-36
 Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 37/241 (15%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + + N+ F Y       +F+ LN  ++ G  LAV+GQ+G GKST++ L++  + PI G +
Sbjct: 5    LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62

Query: 1066 LIDGYDIRTLNLRSLRRKIGLV-QQEPALFSTTIYENIKYG-------NEDASEIELMKA 1117
             +              + IG V Q   + F+ ++ + +  G              +   A
Sbjct: 63   EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
             +A +             +H+  R    LSGGQ+Q + IARAI     ++LLDE TSALD
Sbjct: 110  MQALDYLNL---------THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160

Query: 1177 TASENLIQEALDKLM--EGRTTIMVAHRLST-IRNADKIAVLQQGKVAEIGSHEQLLRKE 1233
             A+++++   L  L   +  T +   H+ +  +  A+K  +L +      G    +L  E
Sbjct: 161  LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILTSE 219

Query: 1234 N 1234
            N
Sbjct: 220  N 220

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  119 bits (300), Expect = 5e-30
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 42/234 (17%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +    + F Y +  + +F+ LNF ++ G   A +G +G GKST++ ++  ++ P  GKI 
Sbjct: 5   LSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEP-ALFATSIANNILLG------------KEDASMDR 483
           +                +G V Q   + FA S+ + +L+G              D     
Sbjct: 64  VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD--YQV 108

Query: 484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
            ++A    N     +        +     T LSGGQ+Q I IARA+    K++LLDE TS
Sbjct: 109 AMQALDYLNLTHLAK-------REF----TSLSGGQRQLILIARAIASECKLILLDEPTS 157

Query: 544 ALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595
           ALD  ++ IV   L  +    N T +   H+ + V  +    +L N Q  + G 
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGE 211

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score =  139 bits (352), Expect = 7e-36
 Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 31/233 (13%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE   V   YP          ++ ++  G  + ++G SGSGK+T++ L+     P  G V
Sbjct: 15   IEFVGVEKIYP--GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG----NEDASEIE--LMKAT 1118
             I G  +  L  +  +R +GLV Q  ALF   T+Y+N+ +G         E++  + +  
Sbjct: 73   WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            +      + +R P            +LSGGQ+QRVA+ARA+   P +LL DE  +A+DT 
Sbjct: 131  RFMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179

Query: 1179 SENLIQEALDKLME--GRTTIMVAH----RLSTIRNADKIAVLQQGKVAEIGS 1225
                ++  + ++ +  G T++ V H     L     AD++ VL +G V + G+
Sbjct: 180  IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGT 229

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score =  124 bits (314), Expect = 7e-31
 Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 36/239 (15%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IEF  V   YP         ++F +  G+    +GPSGSGK+TI+ ++  L  PT G + 
Sbjct: 15  IEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHS 495
           + G  +  L  +  +  +GLV Q  ALF   ++ +N+  G  +  + +    A+      
Sbjct: 74  IGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR 131

Query: 496 FV--EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ 547
           F+  E   + +  +       LSGGQ+QR+A+ARA+   P++LL DE  +A+D       
Sbjct: 132 FMRLESYANRFPHE-------LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184

Query: 548 ESELI-VQRALEKIMSNRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
            + +  V   +  +    T++ V H       ++     D ++VL  G V + GT  ++
Sbjct: 185 RTFVRQVHDEM-GV----TSVFVTHDQEEALEVA-----DRVLVLHEGNVEQFGTPEEV 233

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score =  134 bits (341), Expect = 1e-35
 Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 26/220 (11%)

Query: 1026 NLNLKVSAGRS-LAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084
             LN+    GR    ++G +G+GKS  + L+     P  G V ++G DI    L   RR I
Sbjct: 15   RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72

Query: 1085 GLVQQEPALFS-TTIYENIKYG--NEDASEIE--LMKATKAANAHGFISRMPEGYQSHVG 1139
            G V Q+ ALF   ++Y NI YG  N +  E +  + +  +       + R P        
Sbjct: 73   GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA------- 125

Query: 1140 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTI 1197
                +LSGG++QRVA+ARA++  P +LLLDE  SA+D  ++ ++ E L  +        +
Sbjct: 126  ----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181

Query: 1198 MVAHRLS---TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
             V H L     +  AD++AV+  G++ E G  ++L   +N
Sbjct: 182  HVTHDLIEAAML--ADEVAVMLNGRIVEKGKLKELFSAKN 219

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score =  123 bits (312), Expect = 8e-32
 Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 42/223 (18%)

Query: 396 NLNFSVDAGKTF-AFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
            LN   + G+ +   +GP+G+GKS  + ++  + +P  G++ L+G D+  L  +  R  +
Sbjct: 15  RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGI 72

Query: 455 GLVSQEPALFA-TSIANNILLG----KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
           G V Q+ ALF   S+  NI  G    +      RV E A+       ++  P        
Sbjct: 73  GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA------- 125

Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ESELI-VQRALEKIMS 562
               +LSGG++QR+A+ARA++  P++LLLDE  SA+D         EL  VQR       
Sbjct: 126 ----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF----- 176

Query: 563 NRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
           +   + V H       L+     D + V+ NG++VE G   +L
Sbjct: 177 DVPILHVTHDLIEAAMLA-----DEVAVMLNGRIVEKGKLKEL 214

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score =  133 bits (338), Expect = 2e-35
 Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 22/227 (9%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +   N+           I + ++L V  G  ++++G SGSGKST++ ++     P  G V
Sbjct: 5    LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61

Query: 1066 LIDGYDIRTLNLRSL----RRKIGLV-QQEPALFSTTIYENI----KYGNEDASEIELMK 1116
             ++G ++   N + L     RK+G V Q    +   T  EN+        +   E +  +
Sbjct: 62   FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-ER 120

Query: 1117 ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
                 +  G   ++     S    +  +LSGG++QRVAIARA+   P +L  DE T  LD
Sbjct: 121  GEYLLSELGLGDKL-----SR---KPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172

Query: 1177 TASENLIQEALDKL-MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAE 1222
            +A+   + +   K+   G + +MV H         +   ++ GKV  
Sbjct: 173  SANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score =  111 bits (280), Expect = 1e-27
 Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 11/211 (5%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL---QLKW 449
           + + ++ SV  G+  + +G SGSGKST++ ++  L  PT GK+ L+G ++      +L  
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78

Query: 450 LR-EQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507
           LR  ++G V Q   L    +   N+++        +     +     S + GL D    +
Sbjct: 79  LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-GLGD----K 133

Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI-MSNRTT 566
           +     +LSGG++QR+AIARA+   P +L  DE T  LD+ +   V     KI     + 
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSI 193

Query: 567 IVVAHRLSTVRDVDTIMVLKNGQVVESGTHV 597
           ++V H           + +K+G+VV   T V
Sbjct: 194 VMVTHERELAELTHRTLEMKDGKVVGEITRV 224

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score =  134 bits (339), Expect = 4e-35
 Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 43/233 (18%)

Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----- 445
           H V + ++    AG   + +G SGSGKST +  +  L +P+ G I+++G ++  +     
Sbjct: 19  HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78

Query: 446 --------QLKWLREQMGLVSQEPALFA-TSIANNILLG--------KEDASMDRVIEAA 488
                   QL+ LR ++ +V Q   L++  ++  N++          K DA         
Sbjct: 79  QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA--------- 129

Query: 489 KAANAHSFVE--GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
               A  ++   G+ +  Q +       LSGGQ+QR++IARA+   P +LL DE TSALD
Sbjct: 130 -RERALKYLAKVGIDERAQGKYP---VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185

Query: 547 AE--SE-LIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
            E   E L + + L +    +T +VV H +   R V   ++ L  G++ E G 
Sbjct: 186 PELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score =  129 bits (327), Expect = 2e-33
 Identities = 74/257 (28%), Positives = 126/257 (49%), Gaps = 54/257 (21%)

Query: 1006 IELRNV--SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            + + ++   +         + + ++L+  AG  ++++G SGSGKST +  +     P  G
Sbjct: 7    LHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 61

Query: 1064 TVLIDGYDIRTL-------------NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDA 1109
             ++++G +I  +              LR LR ++ +V Q   L+S  T+ EN+       
Sbjct: 62   AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA---- 117

Query: 1110 SEIELMKATKA---ANAHGFISRMPEGYQSHVG--DRG-----VQLSGGQKQRVAIARAI 1159
              I+++  +K      A  ++++        VG  +R      V LSGGQ+QRV+IARA+
Sbjct: 118  -PIQVLGLSKHDARERALKYLAK--------VGIDERAQGKYPVHLSGGQQQRVSIARAL 168

Query: 1160 LKNPSILLLDEATSALDTASENLIQEALDKLM-----EGRTTIMVAHRLSTIRN-ADKIA 1213
               P +LL DE TSALD   E L+ E L  +M     EG+T ++V H +   R+ +  + 
Sbjct: 169  AMEPDVLLFDEPTSALD--PE-LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVI 224

Query: 1214 VLQQGKVAEIGSHEQLL 1230
             L QGK+ E G  EQ+ 
Sbjct: 225  FLHQGKIEEEGDPEQVF 241

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score =  132 bits (335), Expect = 6e-35
 Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 29/236 (12%)

Query: 1006 IELRNVSFKYPV-RPDITIFENLNLKVSAGRSLAVVGQSGSGKST---VISLVMRFYDPI 1061
            ++L+NV+  Y +    I   +N+NL +  G  ++++G SGSGKST   +I  + +   P 
Sbjct: 2    VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58

Query: 1062 SGTVLIDGYDIRTLNLRSL----RRKIGLV-QQEPALFSTTIYENI-------KYGNEDA 1109
             G V ID      L+   L    R KIG V QQ   +   T  EN+         G    
Sbjct: 59   EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118

Query: 1110 SEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 1169
             E    +A +         R      +       QLSGGQ+QRVAIARA+  NP I+L D
Sbjct: 119  EERR-KRALECLKMAELEERFANHKPN-------QLSGGQQQRVAIARALANNPPIILAD 170

Query: 1170 EATSALDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1223
            + T ALD+ +   I + L KL   +G+T ++V H ++  R  ++I  L+ G+V   
Sbjct: 171  QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score =  114 bits (287), Expect = 2e-28
 Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 16/228 (7%)

Query: 377 IEFSEVCFAYPSRPHMVF--ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           ++   V   Y     +++  +N+N ++  G+  + +GPSGSGKST+++++  L +PT G+
Sbjct: 2   VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 435 ILLDGHDLKSL---QLKWLR-EQMGLVSQEPALFA-TSIANNI---LLGKEDASMDRVIE 486
           + +D      L   +L  +R +++G V Q+  L    +   N+   L+ K   +M     
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121

Query: 487 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
             +A         L + +         QLSGGQ+QR+AIARA+  NP I+L D+ T ALD
Sbjct: 122 RKRALECLKMA-ELEERFANHKP---NQLSGGQQQRVAIARALANNPPIILADQPTWALD 177

Query: 547 AESELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 592
           +++   + + L+K+     +T +VV H ++  R  + I+ LK+G+V  
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  141 bits (357), Expect = 7e-35
 Identities = 58/280 (20%), Positives = 104/280 (37%), Gaps = 34/280 (12%)

Query: 978  PVFGILYRKTAIQPDD-PASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRS 1036
            P   + +R  A+Q     A++++     +      S K        +      + S    
Sbjct: 323  PAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEI 380

Query: 1037 LAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP--ALF 1094
            L ++G++G+GK+T+I L+     P  G  +        LN+    +KI          LF
Sbjct: 381  LVMMGENGTGKTTLIKLLAGALKPDEGQDIPK------LNVSMKPQKIAPKFPGTVRQLF 434

Query: 1095 STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154
               I        +  +++      K       I +  +            LSGG+ QRVA
Sbjct: 435  FKKIRGQFL-NPQFQTDV-----VKPLRIDDIIDQEVQ-----------HLSGGELQRVA 477

Query: 1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADK 1211
            I  A+     I L+DE ++ LD+    +  + + + +    +T  +V H        ADK
Sbjct: 478  IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADK 537

Query: 1212 IAVLQQGKVAEI--GSHEQLLRKENGIYKQL-IRLQQDKN 1248
            + V +          + E LL   N   K L +  ++D N
Sbjct: 538  VIVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPN 577

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  136 bits (344), Expect = 3e-33
 Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 32/250 (12%)

Query: 352 IIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPS----RPHMVFENLNFSVDAGKTF 407
           I  EN           I       Q + +   F+YPS    +   V           +  
Sbjct: 322 IPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEIL 381

Query: 408 AFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP--ALFA 465
             +G +G+GK+T+I ++    +P  G+ +        L +    +++          LF 
Sbjct: 382 VMMGENGTGKTTLIKLLAGALKPDEGQDIPK------LNVSMKPQKIAPKFPGTVRQLFF 435

Query: 466 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 525
             I    L      +     +  K       ++                LSGG+ QR+AI
Sbjct: 436 KKIRGQFL------NPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQRVAI 478

Query: 526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDV-DTI 582
             A+     I L+DE ++ LD+E  +I  + + + +  + +T  +V H       + D +
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKV 538

Query: 583 MVLKNGQVVE 592
           +V +      
Sbjct: 539 IVFEGIPSKN 548

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  129 bits (326), Expect = 5e-31
 Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 38/246 (15%)

Query: 368 ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL 427
           I LP        + V   Y +    +  +   +   G+    VG +G GKST + ++   
Sbjct: 73  INLPT----NLEAHVTHRYSANSFKL--HRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126

Query: 428 YEPTSGKI-----------LLDGHDLKSLQLKWLREQMGLVSQEP--ALFATSIANNI-- 472
            +P  G+               G +L++   K L + +  + +         +I   +  
Sbjct: 127 QKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQK 186

Query: 473 ---LLGKEDASM-DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 528
              LL        + V    K     + ++   +           +LSGG+ QR AI  +
Sbjct: 187 VGELLKLRMEKSPEDVKRYIKILQLENVLKRDIE-----------KLSGGELQRFAIGMS 235

Query: 529 VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA-HRLSTVRDV-DTIMVLK 586
            ++   + + DE +S LD +  L   + +  +++    ++   H LS +  + D + ++ 
Sbjct: 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIY 295

Query: 587 NGQVVE 592
               V 
Sbjct: 296 GVPSVY 301

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  127 bits (321), Expect = 2e-30
 Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 21/231 (9%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--------RF 1057
                +V+ +Y      +   +       G+ L +VG +G GKST + ++         RF
Sbjct: 78   NLEAHVTHRYSAN---SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134

Query: 1058 YDPISGTVLI---DGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIEL 1114
             DP     +I    G +++    + L   I  + +    +   I   IK   +   E+  
Sbjct: 135  DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ--YVDNIPRAIKGPVQKVGELLK 192

Query: 1115 MKATKAANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATS 1173
            ++  K+        ++ +    +V  R + +LSGG+ QR AI  + ++   + + DE +S
Sbjct: 193  LRMEKSPEDVKRYIKILQ--LENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS 250

Query: 1174 ALDTASENLIQEALDKLMEGRTTIMVA-HRLSTIRN-ADKIAVLQQGKVAE 1222
             LD        + +  L+     ++   H LS +   +D + ++       
Sbjct: 251  YLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score =  135 bits (342), Expect = 1e-34
 Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 42/236 (17%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+ ++S K+         +NL+LKV +G    ++G +G+GK+  + L+  F+ P SG +
Sbjct: 2    IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG--------NEDASEI-ELM 1115
            L+DG D+   +L   +  I  V Q  +LF    + +N+++G         +   +    +
Sbjct: 58   LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115

Query: 1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
            K          + R P             LSGG++QRVA+ARA++ NP ILLLDE  SAL
Sbjct: 116  KIE------HLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSAL 158

Query: 1176 DTASENLIQEALDKLME--GRTTIMVAH----RLSTIRNADKIAVLQQGKVAEIGS 1225
            D  ++   +E L  L +    T + + H           AD+IAV+  GK+ ++G 
Sbjct: 159  DPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGK 211

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score =  119 bits (302), Expect = 2e-29
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 44/220 (20%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           +NL+  V++G+ F  +GP+G+GK+  + ++   + P SG+ILLDG D+  L  +  +  +
Sbjct: 17  DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDI 74

Query: 455 GLVSQEPALFA-TSIANNI-----LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQV 508
             V Q  +LF   ++  N+     +   +D    RV++ A+       ++  P       
Sbjct: 75  AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--KRVLDTARDLKIEHLLDRNPL------ 126

Query: 509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA------ESELI-VQRALEKIM 561
                 LSGG++QR+A+ARA++ NPKILLLDE  SALD          L  + +      
Sbjct: 127 -----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN---- 177

Query: 562 SNRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGT 595
              T + + H       ++     D I V+ +G++++ G 
Sbjct: 178 -KLTVLHITHDQTEARIMA-----DRIAVVMDGKLIQVGK 211

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score =  133 bits (338), Expect = 6e-34
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 40/243 (16%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + + ++S  +    +  +  +++L +  G  L ++G SG GK+T++  +  F  P SG +
Sbjct: 5    LHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61

Query: 1066 LIDGYDI--RTLNLRSLRRKIGLVQQEPALF-STTIYENIKYG----NEDASEIELMKAT 1118
             + G  I  +  NL    R++G + QE  LF   T+Y NI YG        ++       
Sbjct: 62   SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQE----RQ 117

Query: 1119 KAANA------HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1172
            +               R P            +LSGGQ+QR A+ARA+  +P ++LLDE  
Sbjct: 118  RIEAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPF 166

Query: 1173 SALDTA-SENLIQEALDKLME-GRTTIMVAH----RLSTIRNADKIAVLQQGKVAEIGSH 1226
            SALD      + ++ +  L   G++ + V+H     L     AD+IAV++QG++ +  S 
Sbjct: 167  SALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTASP 223

Query: 1227 EQL 1229
             +L
Sbjct: 224  HEL 226

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score =  123 bits (312), Expect = 1e-30
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 39/238 (16%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +    +  ++ + P  V  +++ S+D G+    +G SG GK+T++  +    +P SG+I 
Sbjct: 5   LHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62

Query: 437 LDGHDLKSLQLKWL---REQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAAN 492
           L G  +   +   L     ++G + QE  LF   ++  NI  G  +       E  +   
Sbjct: 63  LSGKTI-FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA 121

Query: 493 AHSFV--EGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-- 548
                    L   Y  +       LSGGQ+QR A+ARA+  +P+++LLDE  SALD +  
Sbjct: 122 MLELTGISELAGRYPHE-------LSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174

Query: 549 ----SELI-VQRALEKIMSNRTTIVVAH------RLSTVRDVDTIMVLKNGQVVESGT 595
                ++I   RA       ++ + V+H      + +     D I V+K G+++++ +
Sbjct: 175 RQIREDMIAALRAN-----GKSAVFVSHDREEALQYA-----DRIAVMKQGRILQTAS 222

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  128 bits (325), Expect = 7e-34
 Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 23/218 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+R++S  Y    D  + E + + +  G  +   G +G GK+T++  +  +  P+ G +
Sbjct: 11   LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 1124
            + +G  I  +     + KI  + +E  +    ++ + +K      + +  +K  K     
Sbjct: 67   IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKA----VASLYGVKVNKNE--- 114

Query: 1125 GFISRMPEGYQ-SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
              I    E  +   +  +  +LS G  +RV +A  +L N  I +LD+   A+D  S++ +
Sbjct: 115  --IMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172

Query: 1184 QEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKV 1220
             +++ +++ E    I+ +    +    D    L +   
Sbjct: 173  LKSILEILKEKGIVIISSREELSY--CDVNENLHKYST 208

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  127 bits (322), Expect = 2e-33
 Identities = 38/206 (18%), Positives = 90/206 (43%), Gaps = 25/206 (12%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           E +  +++ G    F GP+G GK+T++  +    +P  G+I+ +G  +       ++ ++
Sbjct: 26  ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 80

Query: 455 GLVSQEPALFATSIANNIL-----LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
             + +E  +       + L     L     + + +++A ++         + D  + ++G
Sbjct: 81  FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-------EVLD-LKKKLG 132

Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR-TTIV 568
           E    LS G  +R+ +A  +L N +I +LD+   A+D +S+  V +++ +I+  +   I+
Sbjct: 133 E----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188

Query: 569 VAHRLSTVRDVDTIMVLKNGQVVESG 594
            +    +    D    L         
Sbjct: 189 SSREELSY--CDVNENLHKYSTKIDK 212

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score =  129 bits (326), Expect = 1e-33
 Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 46/248 (18%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            ++L++V+         T    L+ +V AG  L +VG +G+GKST+++ +        G++
Sbjct: 5    MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56

Query: 1066 LIDGYDIRTLNLRSLRRKIGLV-QQEPALFSTTIYENIKYG---NEDASEI-ELMKATKA 1120
               G  +   +   L      + QQ+   F+T ++  +            + ++  A   
Sbjct: 57   QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 116

Query: 1121 ANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAIL-------KNPSILLLDEAT 1172
                                R   QLSGG+ QRV +A  +L           +LLLDE  
Sbjct: 117  D---------------DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 161

Query: 1173 SALDTASENLIQEALDKLM-----EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSH 1226
            ++LD A     Q ALDK++     +G   +M +H L+ T+R+A +  +L+ GK+   G  
Sbjct: 162  NSLDVAQ----QSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217

Query: 1227 EQLLRKEN 1234
            E++L   N
Sbjct: 218  EEVLTPPN 225

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score =  115 bits (291), Expect = 7e-29
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 23/214 (10%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
               L+  V AG+    VGP+G+GKST+++ +  +     G I   G  L++     L  
Sbjct: 15  RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLAL 73

Query: 453 QMGLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD-GYQTQVGE 510
               +SQ+    FAT + + + L + D +   ++     A A   ++             
Sbjct: 74  HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA---LDDKLGRST------ 124

Query: 511 GGTQLSGGQKQRIAIARAVL-------RNPKILLLDEATSALDAESELIVQRALEKI-MS 562
              QLSGG+ QR+ +A  VL          ++LLLDE  ++LD   +  + + L  +   
Sbjct: 125 --NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182

Query: 563 NRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGT 595
               ++ +H L+ T+R      +LK G+++ SG 
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  129 bits (326), Expect = 2e-33
 Identities = 54/220 (24%), Positives = 109/220 (49%), Gaps = 21/220 (9%)

Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           + ++F ++ G+ F  +GP+G+GK+T + ++  L +P+SG + + G ++   +   +R+ +
Sbjct: 32  KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90

Query: 455 GLVSQEPALFA--TSIANNILLGK-----EDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507
             + +E   +     I     +            + V  A + A       GL +  + +
Sbjct: 91  SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA-------GLGEKIKDR 143

Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTI 567
           V       S G  +++ IARA++ NP++ +LDE TS LD  +   V++ L++      TI
Sbjct: 144 VST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199

Query: 568 VV-AHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGE 605
           +V +H +  V  + D I ++ NG +VE+GT  +L  +   
Sbjct: 200 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  128 bits (324), Expect = 3e-33
 Identities = 47/238 (19%), Positives = 107/238 (44%), Gaps = 22/238 (9%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + ++++  +        I + ++ ++  G    ++G +G+GK+T + ++     P SG V
Sbjct: 16   VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 1124
             + G ++       +R+ I  + +E   +      E +++     +      +++     
Sbjct: 73   TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRF----VAGFYASSSSEIEE-- 125

Query: 1125 GFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
                 +       G    + DR    S G  +++ IARA++ NP + +LDE TS LD  +
Sbjct: 126  ----MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181

Query: 1180 ENLIQEALDKL-MEGRTTIMVAHRLSTI-RNADKIAVLQQGKVAEIGSHEQLLRKENG 1235
               +++ L +   EG T ++ +H +  +    D+IA++  G + E G+ E+L  +   
Sbjct: 182  AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  134 bits (339), Expect = 7e-33
 Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 23/206 (11%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
                N     G+    +GP+G GK+T   ++        G +  +   L     +    
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342

Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
             G V Q       +  + +       S     E  K  N H  +E              
Sbjct: 343 YDGTVQQ---YLENASKDAL-----STSSWFFEEVTKRLNLHRLLESNV----------- 383

Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVA 570
             LSGG+ Q++ IA  + +   + +LD+ +S LD E   IV +A++++   R   T ++ 
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443

Query: 571 HRLSTVRDV-DTIMVLKNGQVVESGT 595
           H LS    + D I+V K G+  ++G 
Sbjct: 444 HDLSIHDYIADRIIVFK-GEPEKAGL 468

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  126 bits (318), Expect = 3e-30
 Identities = 47/256 (18%), Positives = 101/256 (39%), Gaps = 22/256 (8%)

Query: 1009 RNVSFKYPVRPDITIFENLNLKV-SAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067
              V  +Y     +  F+   L        L V+G++G GK+TV+ ++     P  G    
Sbjct: 3    GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--P 56

Query: 1068 DGYDIRTLNLRSLR-RKIGLVQQEPALFSTTIYENIKYGNED-------ASEIELMKATK 1119
            +    +   L+  R ++I    +E   +S  +    K    +        +  E++    
Sbjct: 57   NSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114

Query: 1120 AANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
                   +  +     +++ ++    LSGG  QR+ +A ++L+   + + D+ +S LD  
Sbjct: 115  ERGKKDEVKELLN--MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR 172

Query: 1179 SENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIY 1237
                + +A+ +L++ +  I+V H L  +    D I ++  G+ +  G   +      GI 
Sbjct: 173  ERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHII-YGESSVYGRVSKSYAARVGIN 231

Query: 1238 KQLIRLQQDKNPEAME 1253
              L      +N +   
Sbjct: 232  NFLKGYLPAENMKIRP 247

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  125 bits (315), Expect = 7e-30
 Identities = 46/253 (18%), Positives = 93/253 (36%), Gaps = 27/253 (10%)

Query: 987  TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 1046
              +  +        ++K  ++   +  K             N +   G  + ++G +G G
Sbjct: 251  KFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF----QLVVDNGEAKEGEIIGILGPNGIG 306

Query: 1047 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 1106
            K+T   +++       G+V  +   +     R      G VQQ          + +   +
Sbjct: 307  KTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ---YLENASKDALSTSS 363

Query: 1107 EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 1166
                E+     TK  N H  +                 LSGG+ Q++ IA  + K   + 
Sbjct: 364  WFFEEV-----TKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKEADLY 407

Query: 1167 LLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEI 1223
            +LD+ +S LD     ++ +A+ ++       T ++ H LS     AD+I V  +G+  + 
Sbjct: 408  VLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKA 466

Query: 1224 GSHEQLLRKENGI 1236
            G     +  + G+
Sbjct: 467  GLATSPVTLKTGM 479

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  123 bits (311), Expect = 2e-29
 Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 23/216 (10%)

Query: 394 FENLNFSV-DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR- 451
           F+               +G +G GK+T++ ++     P  G    +    K   LK  R 
Sbjct: 14  FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRG 71

Query: 452 EQMGLVSQEPA---------LFATSIANNILLGKEDASMDRVIEAAKAANAHSFV--EGL 500
           +++    +E           +     A+  L G  +  + ++ E  K       +    L
Sbjct: 72  KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
            +            LSGG  QR+ +A ++LR   + + D+ +S LD    + + +A+ ++
Sbjct: 132 WNKD---AN----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184

Query: 561 MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           + N+  IVV H L  +  + D I ++     V    
Sbjct: 185 LKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRV 220

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  133 bits (337), Expect = 3e-32
 Identities = 60/218 (27%), Positives = 91/218 (41%), Gaps = 25/218 (11%)

Query: 381 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH 440
           E             E     +  G+    VGP+G GK+T + M+  + EPT GK+  D  
Sbjct: 359 EYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT 418

Query: 441 DLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGL 500
                Q      +   V +   L +           +  S     E  K         G+
Sbjct: 419 VAYKPQYIKAEYEG-TVYE---LLSKID------SSKLNSNFYKTELLKPL-------GI 461

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
            D Y   V +    LSGG+ QR+AIA  +LR+  I LLDE ++ LD E  L V RA+  +
Sbjct: 462 IDLYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517

Query: 561 M--SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGT 595
           M  + +T +VV H +  +  V D ++V + G+    G 
Sbjct: 518 MEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHGR 554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  131 bits (332), Expect = 9e-32
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 37/232 (15%)

Query: 381 EVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP------TSGK 434
           +    Y    +         V  G     VGP+G+GK+T + ++     P       S  
Sbjct: 96  DCVHRY--GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153

Query: 435 ILLDGHDLKSLQLKWL-----------REQMGLVSQEPALFATSIANNILLGKEDASMDR 483
            ++       LQ  +            + Q   V   P      +    LL K D  + +
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQY--VDLLPKAVKGKV--RELLKKVDE-VGK 208

Query: 484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
             E  K     + ++               QLSGG+ QR+AIA A+LR       DE +S
Sbjct: 209 FEEVVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFYFFDEPSS 257

Query: 544 ALDAESELIVQRALEKIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQVVES 593
            LD    L V R + ++ +    ++V  H L+ +  + D I V+     V  
Sbjct: 258 YLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 309

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  125 bits (316), Expect = 1e-29
 Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 25/244 (10%)

Query: 1009 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR-----FYD-PIS 1062
             +   +Y V             V  G  + +VG +G+GK+T + ++         +   S
Sbjct: 95   EDCVHRYGVN---AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151

Query: 1063 GTVLIDGYDIRTLN--LRSLR-RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 1119
               +I  +    L      L+  +I  V +    +   + + +K         EL+K   
Sbjct: 152  WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ--YVDLLPKAVK-----GKVRELLKKVD 204

Query: 1120 AANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
                   + +  E    +V DR + QLSGG+ QRVAIA A+L+       DE +S LD  
Sbjct: 205  EVGKFEEVVKELEL--ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262

Query: 1179 SENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAE-IGSHEQLLRKENG 1235
                +   + +L  EG+  ++V H L+ +   +D I V+        I S  +  R    
Sbjct: 263  QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGIN 322

Query: 1236 IYKQ 1239
             + Q
Sbjct: 323  EFLQ 326

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  123 bits (312), Expect = 3e-29
 Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 43/276 (15%)

Query: 985  RKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSG 1044
            R   I+    + +   E +  +E   +   Y         E    ++  G  + +VG +G
Sbjct: 337  RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392

Query: 1045 SGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIK 1103
             GK+T + ++    +P  G V  D               +    Q     +  T+YE + 
Sbjct: 393  IGKTTFVKMLAGVEEPTEGKVEWDL-------------TVAYKPQYIKAEYEGTVYELL- 438

Query: 1104 YGNEDASEIELMKATKAANAHGFISRM--PEGYQSHVGDRGVQLSGGQKQRVAIARAILK 1161
                  S+I+  K          +  +   + Y  +V      LSGG+ QRVAIA  +L+
Sbjct: 439  ------SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE----DLSGGELQRVAIAATLLR 488

Query: 1162 NPSILLLDEATSALDTASENLIQ--EALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQ 1216
            +  I LLDE ++ LD   E  +    A+  LME   +T ++V H +  I   +D++ V  
Sbjct: 489  DADIYLLDEPSAYLD--VEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF- 545

Query: 1217 QGKVAEIGSHEQLLRKENGIYKQL----IRLQQDKN 1248
            +G+    G     +    G+ + L    I  ++D +
Sbjct: 546  EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPD 581

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  130 bits (329), Expect = 1e-31
 Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 25/206 (12%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
             E     +  G+    VGP+G GK+T + M+  + EPT GKI  D       Q      
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADY 360

Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
           +   V +   L +   A+      +  S     E  K         G+ D Y  +V E  
Sbjct: 361 EG-TVYE---LLSKIDAS------KLNSNFYKTELLKPL-------GIIDLYDREVNE-- 401

Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVA 570
             LSGG+ QR+AIA  +LR+  I LLDE ++ LD E  L V RA+  +M  + +T +VV 
Sbjct: 402 --LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459

Query: 571 HRLSTVRDV-DTIMVLKNGQVVESGT 595
           H +  +  V D +MV + G+  + G 
Sbjct: 460 HDVLMIDYVSDRLMVFE-GEPGKYGR 484

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  124 bits (314), Expect = 9e-30
 Identities = 59/276 (21%), Positives = 109/276 (39%), Gaps = 41/276 (14%)

Query: 985  RKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSG 1044
            R   I+      +   E +  +    +   Y         E    ++  G  + +VG +G
Sbjct: 267  RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322

Query: 1045 SGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENI 1102
             GK+T + ++    +P  G +  D        +    + I    +     L S      +
Sbjct: 323  IGKTTFVKMLAGVEEPTEGKIEWDL------TVAYKPQYIKADYEGTVYELLSKIDASKL 376

Query: 1103 KYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162
               N +  + EL+K             + + Y   V     +LSGG+ QRVAIA  +L++
Sbjct: 377  ---NSNFYKTELLKPLG----------IIDLYDREVN----ELSGGELQRVAIAATLLRD 419

Query: 1163 PSILLLDEATSALDTASENLIQ--EALDKLME--GRTTIMVAHRLSTIRN-ADKIAVLQQ 1217
              I LLDE ++ LD   E  +    A+  LME   +T ++V H +  I   +D++ V  +
Sbjct: 420  ADIYLLDEPSAYLD--VEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-E 476

Query: 1218 GKVAEIGSHEQLLRKENGIYKQL----IRLQQDKNP 1249
            G+  + G     +    G+ + L    I  ++D + 
Sbjct: 477  GEPGKYGRALPPMGMREGMNRFLASIGITFRRDPDT 512

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  124 bits (313), Expect = 1e-29
 Identities = 56/243 (23%), Positives = 97/243 (39%), Gaps = 25/243 (10%)

Query: 1010 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM-----RFYD-PISG 1063
            +   +Y V   +         V  G  + +VG +G+GKST + ++             S 
Sbjct: 26   DCVHRYGVNAFV---LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82

Query: 1064 TVLIDGYDIRTLN--LRSLR-RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKA 1120
              +I  +    L      L+  +I  V +    +   I + +K        IEL+K    
Sbjct: 83   DGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLIPKAVK-----GKVIELLKKADE 135

Query: 1121 ANAHGFISRMPEGYQSHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
                  + +  E    +V +R +  LSGG+ QRVAIA A+L+N +    DE +S LD   
Sbjct: 136  TGKLEEVVKALEL--ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193

Query: 1180 ENLIQEALDKLMEGRTTIMVA-HRLSTIRN-ADKIAVLQQGKVAE-IGSHEQLLRKENGI 1236
                  A+ +L E   +++V  H L+ +   +D I V+        I S  +  R     
Sbjct: 194  RLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINE 253

Query: 1237 YKQ 1239
            + +
Sbjct: 254  FLR 256

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  117 bits (294), Expect = 3e-27
 Identities = 53/217 (24%), Positives = 81/217 (37%), Gaps = 35/217 (16%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP------TSGKILLDGHDLKSLQLKW 449
                V  G     VGP+G+GKST + ++     P       S   ++       LQ  +
Sbjct: 39  YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98

Query: 450 L-----------REQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 498
                       + Q   V   P      +    LL K D    ++ E  KA    + +E
Sbjct: 99  EKLKNGEIRPVVKPQY--VDLIPKAVKGKV--IELLKKADE-TGKLEEVVKALELENVLE 153

Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
                           LSGG+ QR+AIA A+LRN      DE +S LD    L   RA+ 
Sbjct: 154 REIQ-----------HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR 202

Query: 559 KIMSNRTTIVVA-HRLSTVRDV-DTIMVLKNGQVVES 593
           ++     +++V  H L+ +  + D I V+     V  
Sbjct: 203 RLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score =  125 bits (315), Expect = 5e-31
 Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 37/240 (15%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
             I ++NVS  +  +  +   +N+N+ +  G    ++G SG+GK+T + ++     P +G 
Sbjct: 3    RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61

Query: 1065 VLIDGYDIRTLNLRSL---RRKIGLVQQEPALFST-TIYENIKYG----NEDASEIE--L 1114
            +  D   + +     +    RKIG+V Q  AL+   T +ENI +          EI   +
Sbjct: 62   LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121

Query: 1115 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174
             +  K  + H  ++  P            +LSG Q+QRVA+ARA++K+PS+LLLDE  S 
Sbjct: 122  EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170

Query: 1175 LD------TASENLIQEALDKLMEGRTTIMVAHRLS---TIRNADKIAVLQQGKVAEIGS 1225
            LD        +   ++E   +L  G T ++V+H  +    I  AD++ VL +GK+ ++G 
Sbjct: 171  LDARMRDSARAL--VKEVQSRL--GVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVGK 224

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score =  121 bits (305), Expect = 1e-29
 Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 42/246 (17%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           +I    V   +     +  +N+N +++ G+ F  +GPSG+GK+T + ++  L  P++G++
Sbjct: 3   RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62

Query: 436 LLDGHDLKSLQLKWL----REQMGLVSQEPALFAT-SIANNILLGKEDASMD------RV 484
             D   + S     +    R+ +G+V Q  AL+   +   NI     +  M       RV
Sbjct: 63  YFDDRLVASNGKLIVPPEDRK-IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121

Query: 485 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544
            E AK  + H  +   P            +LSG Q+QR+A+ARA++++P +LLLDE  S 
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170

Query: 545 LDAESELIVQ-RALEKIMSNR---TTIVVAHRLSTVRD-------VDTIMVLKNGQVVES 593
           LDA   +    RAL K + +R   T +VV+H      D        D + VL  G++V+ 
Sbjct: 171 LDA--RMRDSARALVKEVQSRLGVTLLVVSH------DPADIFAIADRVGVLVKGKLVQV 222

Query: 594 GTHVDL 599
           G   DL
Sbjct: 223 GKPEDL 228

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score =  109 bits (275), Expect = 9e-26
 Identities = 81/241 (33%), Positives = 123/241 (51%), Gaps = 46/241 (19%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
             I+L N+  K+    + T   N+NLK+  G  +A++G SGSGKST++  +   Y P SG 
Sbjct: 3    EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG----NEDASEIELMKATK 1119
            +  D  D+    L    R +GLV Q  AL+   T+Y+NI +          EI+  K  +
Sbjct: 60   IYFDEKDVT--ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEID-KKVRE 116

Query: 1120 AANAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
             A        ++R P            QLSGGQ+QRVAIARA++K P +LLLDE  S LD
Sbjct: 117  VAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165

Query: 1177 ------TASENLIQEALDKLMEGRTTIMVAH------RLSTIRNADKIAVLQQGKVAEIG 1224
                    +E  ++    +L  G TT+ V H       +     AD+IAV+++G++ ++G
Sbjct: 166  ALLRLEVRAE--LKRLQKEL--GITTVYVTHDQAEALAM-----ADRIAVIREGEILQVG 216

Query: 1225 S 1225
            +
Sbjct: 217  T 217

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score =  104 bits (263), Expect = 3e-24
 Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 41/242 (16%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           +I+   +   + +       N+N  +  G+  A +GPSGSGKST++  +  +Y+PTSGKI
Sbjct: 3   EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMD------RVIEAA 488
             D  D+  L  K  R  +GLV Q  AL+   ++  NI    E           +V E A
Sbjct: 61  YFDEKDVTELPPK-DRN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA 118

Query: 489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
           K  +    +   P            QLSGGQ+QR+AIARA+++ P++LLLDE  S LDA 
Sbjct: 119 KMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA- 166

Query: 549 SELIVQ-RALEKIMSNR---TTIVVAHRLSTVRD-------VDTIMVLKNGQVVESGTHV 597
             L ++ RA  K +      TT+ V H      D        D I V++ G++++ GT  
Sbjct: 167 -LLRLEVRAELKRLQKELGITTVYVTH------DQAEALAMADRIAVIREGEILQVGTPD 219

Query: 598 DL 599
           ++
Sbjct: 220 EV 221

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score =  101 bits (253), Expect = 5e-23
 Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 46/241 (19%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            +I + N+  KY     +   + ++ +V  G  +A++G SG GK+T + ++   Y P SG 
Sbjct: 3    SIRVVNLK-KYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG----NEDASEIELMKATK 1119
            +  D   +   ++    R++G+V Q  AL+   T++ENI +          E+E  +  +
Sbjct: 60   IYFDDVLVN--DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVE-KRVVE 116

Query: 1120 AANAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
             A        + R P            QLSGGQ+QRVA+ARA++K P +LL DE  S LD
Sbjct: 117  IARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165

Query: 1177 TA------SENLIQEALDKLMEGRTTIMVAH------RLSTIRNADKIAVLQQGKVAEIG 1224
                    +E  I+    +L  G T++ V H       +     A +IAV  QGK+ + G
Sbjct: 166  ANLRMIMRAE--IKHLQQEL--GITSVYVTHDQAEAMTM-----ASRIAVFNQGKLVQYG 216

Query: 1225 S 1225
            +
Sbjct: 217  T 217

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 96.5 bits (241), Expect = 2e-21
 Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 39/225 (17%)

Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
             + ++F V  G+  A +GPSG GK+T + M+  +Y+PTSG+I  D   +  +  K  RE
Sbjct: 18  AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK-YRE 76

Query: 453 QMGLVSQEPALFAT-SIANNILLGKEDASMD------RVIEAAKAANAHSFVEGLPDGYQ 505
            +G+V Q  AL+   ++  NI        +       RV+E A+     + ++  P    
Sbjct: 77  -VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---- 131

Query: 506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ-RALEKIMSNR 564
                  TQLSGGQ+QR+A+ARA+++ PK+LL DE  S LDA   L +  RA  K +   
Sbjct: 132 -------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA--NLRMIMRAEIKHLQQE 182

Query: 565 ---TTIVVAHRLSTVRD-------VDTIMVLKNGQVVESGTHVDL 599
              T++ V H      D          I V   G++V+ GT  ++
Sbjct: 183 LGITSVYVTH------DQAEAMTMASRIAVFNQGKLVQYGTPDEV 221

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score =  101 bits (253), Expect = 8e-23
 Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 46/241 (19%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
             ++L N++ ++    + T    LNL +  G  L ++G SG GK+T + ++    +P  G 
Sbjct: 11   EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG----NEDASEIELMKATK 1119
            +     D+    L    R I +V Q  A++   T+YENI +          EI+  +   
Sbjct: 68   IYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID-KRVRW 124

Query: 1120 AANAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
            AA        ++R P            QLSGGQ+QRVA+ARAI+  P +LL+DE  S LD
Sbjct: 125  AAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173

Query: 1177 ------TASENLIQEALDKLMEGRTTIMVAH------RLSTIRNADKIAVLQQGKVAEIG 1224
                    +E  I++   KL    TTI V H       +      D+IAV+ +G++ +IG
Sbjct: 174  AKLRVAMRAE--IKKLQQKL--KVTTIYVTHDQVEAMTM-----GDRIAVMNRGQLLQIG 224

Query: 1225 S 1225
            S
Sbjct: 225  S 225

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 96.5 bits (241), Expect = 2e-21
 Identities = 71/252 (28%), Positives = 115/252 (45%), Gaps = 42/252 (16%)

Query: 366 DGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQ 425
           + I + K+  +++   +   + +        LN ++  G+    +GPSG GK+T + M+ 
Sbjct: 2   NNIEVIKMV-EVKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58

Query: 426 RLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMD-- 482
            L EPT G+I     D+  L  K  R  + +V Q  A++   ++  NI    +       
Sbjct: 59  GLEEPTEGRIYFGDRDVTYLPPK-DRN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD 116

Query: 483 ----RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLL 538
               RV  AA+       +   P            QLSGGQ+QR+A+ARA++  P +LL+
Sbjct: 117 EIDKRVRWAAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLM 165

Query: 539 DEATSALDAESELIVQ-RALEKIMSNR---TTIVVAHRLSTVRD-------VDTIMVLKN 587
           DE  S LDA  +L V  RA  K +  +   TTI V H      D        D I V+  
Sbjct: 166 DEPLSNLDA--KLRVAMRAEIKKLQQKLKVTTIYVTH------DQVEAMTMGDRIAVMNR 217

Query: 588 GQVVESGTHVDL 599
           GQ+++ G+  ++
Sbjct: 218 GQLLQIGSPTEV 229

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 98.5 bits (246), Expect = 5e-22
 Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 54/248 (21%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
             + L +V   +    ++T    ++L+V  G  + ++G SG GK+T + ++    +P  G 
Sbjct: 3    GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59

Query: 1065 VLIDGYDIRTLNLRSLR-------RKIGLVQQEPALFST-TIYENIKYG----NEDASEI 1112
            + I     + +             R I +V Q  AL+   T+Y+NI +          EI
Sbjct: 60   IYIGD---KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI 116

Query: 1113 ELMKATKAANAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLD 1169
            +  +  + A   G    ++R P            +LSGGQ+QRVA+ RAI++ P + L+D
Sbjct: 117  D-QRVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMD 164

Query: 1170 EATSALD------TASENLIQEALDKLMEGRTTIMVAH------RLSTIRNADKIAVLQQ 1217
            E  S LD        +E  +++   +L  G TTI V H       +      D+IAV+ +
Sbjct: 165  EPLSNLDAKLRVRMRAE--LKKLQRQL--GVTTIYVTHDQVEAMTM-----GDRIAVMNR 215

Query: 1218 GKVAEIGS 1225
            G + ++GS
Sbjct: 216  GVLQQVGS 223

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 93.8 bits (234), Expect = 2e-20
 Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 47/248 (18%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
            +   +V   +          ++  V  G+    +GPSG GK+T + M+  L EP+ G+I
Sbjct: 3   GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60

Query: 436 LLDGHDLKSLQLKWLRE------QMGLVSQEPALFAT-SIANNILLGKEDASMD------ 482
            +    +   +             M  V Q  AL+   ++ +NI    +   +       
Sbjct: 61  YIGDKLVADPEKGIFVPPKDRDIAM--VFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118

Query: 483 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542
           RV E A+       +   P            +LSGGQ+QR+A+ RA++R P++ L+DE  
Sbjct: 119 RVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPL 167

Query: 543 SALDAESELIVQ-RALEKIMSNR---TTIVVAHRLSTVRD-------VDTIMVLKNGQVV 591
           S LDA  +L V+ RA  K +  +   TTI V H      D        D I V+  G + 
Sbjct: 168 SNLDA--KLRVRMRAELKKLQRQLGVTTIYVTH------DQVEAMTMGDRIAVMNRGVLQ 219

Query: 592 ESGTHVDL 599
           + G+  ++
Sbjct: 220 QVGSPDEV 227

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 93.0 bits (232), Expect = 6e-21
 Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 22/217 (10%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
            ++ SV+ G     +GP+GSGKST+I+++    +   G++  +  D+ + +        G
Sbjct: 25  GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE-PAELYHYG 83

Query: 456 LVS--QEPALFAT-SIANNILLG---KEDASMDRVI-------EAAKAANAHSFVE--GL 500
           +V   Q P      ++  N+L+G     ++ ++ +        E      A   +E   L
Sbjct: 84  IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL 143

Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
              Y  + G    +LSGGQ + + I RA++ NPK++++DE  + +       +   + ++
Sbjct: 144 SHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199

Query: 561 MSNRTTIV-VAHRLSTVRDV-DTIMVLKNGQVVESGT 595
            +   T + + HRL  V +  D + V+ NGQ++  G 
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 79.1 bits (196), Expect = 3e-16
 Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 21/214 (9%)

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR-KI 1084
             +++ V+ G    ++G +GSGKST+I+++  F     G V  +  DI   N         
Sbjct: 25   GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI--TNKEPAELYHY 82

Query: 1085 GLVQ--QEPALFST-TIYENIKYGNEDASEIELMKATK----------AANAHGFISRMP 1131
            G+V+  Q P      T+ EN+  G     E  L                  A   +  + 
Sbjct: 83   GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141

Query: 1132 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM 1191
                     +  +LSGGQ + V I RA++ NP ++++DE  + +     + I   + +L 
Sbjct: 142  -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200

Query: 1192 E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKV-AE 1222
              G T +++ HRL  + N  D + V+  G++ AE
Sbjct: 201  AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 89.9 bits (224), Expect = 4e-19
 Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 64/250 (25%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV---------ISLVM 1055
            +++L+NV+  +    ++ + +++NL +  G  +  VG SG GKST+         I+   
Sbjct: 3    SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT--- 56

Query: 1056 RFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG----NEDAS 1110
                  SG + I    +   +     R +G+V Q  AL+   ++ EN+ +G         
Sbjct: 57   ------SGDLFIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE 108

Query: 1111 EIELMKATKAANAHG---FISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 1167
             I   +  + A        + R P+            LSGGQ+QRVAI R ++  PS+ L
Sbjct: 109  VIN-QRVNQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFL 156

Query: 1168 LDEATSALDTA------SENLIQEALDKLMEGRTTIMVAH------RLSTIRNADKIAVL 1215
            LDE  S LD A       E  I     +L  GRT I V H       L     ADKI VL
Sbjct: 157  LDEPLSNLDAALRVQMRIE--ISRLHKRL--GRTMIYVTHDQVEAMTL-----ADKIVVL 207

Query: 1216 QQGKVAEIGS 1225
              G+VA++G 
Sbjct: 208  DAGRVAQVGK 217

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 84.9 bits (211), Expect = 2e-17
 Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 43/243 (17%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
            ++   V  A+     +V +++N  +  G+   FVGPSG GKST++ M+  L   TSG +
Sbjct: 3   SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNI-----LLGKEDASMD-RVIEAA 488
            +    +           +G+V Q  AL+   S+A N+     L G +   ++ RV + A
Sbjct: 61  FIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118

Query: 489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
           +       ++  P             LSGGQ+QR+AI R ++  P + LLDE  S LDA 
Sbjct: 119 EVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA- 166

Query: 549 SELIVQ-----RALEKIMSNRTTIVVAHRLSTVRD-------VDTIMVLKNGQVVESGTH 596
             L VQ       L K +  RT I V H      D        D I+VL  G+V + G  
Sbjct: 167 -ALRVQMRIEISRLHKRL-GRTMIYVTH------DQVEAMTLADKIVVLDAGRVAQVGKP 218

Query: 597 VDL 599
           ++L
Sbjct: 219 LEL 221

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 78.3 bits (194), Expect = 5e-16
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 49/230 (21%)

Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-REQM 454
            ++  V  G+    +G +G+GK+T +S +  L     GKI+ +G D+ +     + R  +
Sbjct: 24  GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83

Query: 455 GLVSQEPALFAT-SIANNILLG--------KEDASMDRVIEAAKAANAHSFVEGLPDGYQ 505
            LV +   +F   ++  N+++G             ++ +           F    P   +
Sbjct: 84  ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL--------F----PRLKE 131

Query: 506 TQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ---RALEKIMS 562
                GGT LSGG++Q +AI RA++  PK+L++DE +  L   + ++V      ++KI  
Sbjct: 132 RLKQLGGT-LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFEVIQKINQ 187

Query: 563 NRTTIV-----------VAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 601
             TTI+           VAH            VL+ GQ+V  G   +L+ 
Sbjct: 188 EGTTILLVEQNALGALKVAHY---------GYVLETGQIVLEGKASELLD 228

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 76.3 bits (189), Expect = 2e-15
 Identities = 60/242 (24%), Positives = 110/242 (45%), Gaps = 34/242 (14%)

Query: 1007 ELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVL 1066
            E++++   Y     I   + ++LKV  G+ + ++G +G+GK+T +S +        G ++
Sbjct: 8    EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64

Query: 1067 IDGYDIRTLNLRSL-RRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAH 1124
             +G DI       + R  I LV +   +F   T+YEN+  G           A    +  
Sbjct: 65   FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG-----------AYNRKDKE 113

Query: 1125 GFISRMPEGYQS--HVGDRGVQ----LSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            G    +   +     + +R  Q    LSGG++Q +AI RA++  P +L++DE +  L   
Sbjct: 114  GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL--- 170

Query: 1179 SENLIQEALDKLM----EGRTTIMV---AHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231
            +  L+ E  + +     EG T ++V   A     ++ A    VL+ G++   G   +LL 
Sbjct: 171  APILVSEVFEVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228

Query: 1232 KE 1233
             E
Sbjct: 229  NE 230

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 82.0 bits (202), Expect = 9e-16
 Identities = 47/238 (19%), Positives = 86/238 (36%), Gaps = 32/238 (13%)

Query: 966  APDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFE 1025
                +   +A   +     R     P  P   +  +   ++     S  Y  +    +  
Sbjct: 396  MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452

Query: 1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085
               L++   R   + G +G GKST++  +      + G    +              +  
Sbjct: 453  KTQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEEC------------RTV 498

Query: 1086 LVQQEPALF--STTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 1143
             V+ +       T++ + +    E     +           GF     E     +     
Sbjct: 499  YVEHDIDGTHSDTSVLDFV---FESGVGTK-EAIKDKLIEFGF---TDEMIAMPISA--- 548

Query: 1144 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1201
             LSGG K ++A+ARA+L+N  ILLLDE T+ LDT +   +   L+    G T+I ++H
Sbjct: 549  -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 76.2 bits (187), Expect = 5e-14
 Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 37/240 (15%)

Query: 337 AAIAKGKAAAANIISIIKENSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHMVFEN 396
             I   +  A +I+   ++ +  +   G +          +   E   AY ++   +   
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI--LLNK 453

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL 456
               +   + +   GP+G GKST++            + + +G        +  R     
Sbjct: 454 TQLRLKRARRYGICGPNGCGKSTLM------------RAIANGQVDGFPTQEECR--TVY 499

Query: 457 VSQEPALFATSIANNILLGKEDASMDRVIEAA--KAANAHSFVEGL---PDGYQTQVGEG 511
           V  +     +          + + +D V E+           +       +     +   
Sbjct: 500 VEHDIDGTHS----------DTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISA- 548

Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571
              LSGG K ++A+ARAVLRN  ILLLDE T+ LD  +   +   L       T+I ++H
Sbjct: 549 ---LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 63.9 bits (155), Expect = 3e-10
 Identities = 40/260 (15%), Positives = 90/260 (34%), Gaps = 37/260 (14%)

Query: 370 LPKLAGQIEFSE-VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 428
           L   +G++   E    AY  +        +      +   +   +G  + T+    +++ 
Sbjct: 723 LLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQIN 782

Query: 429 EPTS---GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNIL------------ 473
           E  +    KI       + +     R +     +    F       +             
Sbjct: 783 ENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDN 842

Query: 474 -------LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG-----------TQL 515
                  L +  + M   ++  +A  +  F        +      G             L
Sbjct: 843 AWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGL 902

Query: 516 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST 575
           SGGQK ++ +A    + P +++LDE T+ LD +S   + +AL++       I++ H    
Sbjct: 903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSAEF 960

Query: 576 VRDV-DTIMVLKNGQVVESG 594
            +++ + +  +K+G++  SG
Sbjct: 961 TKNLTEEVWAVKDGRMTPSG 980

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 63.5 bits (154), Expect = 3e-10
 Identities = 30/193 (15%), Positives = 71/193 (36%), Gaps = 20/193 (10%)

Query: 1040 VGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIY 1099
            + +       +  +  R     +       Y+   L   ++  K        ++ +  I 
Sbjct: 792  IFKIEGTPRRIAGIHSRRKFKNT-----YEYECSFLLGENIGMKSERWVPMMSVDNAWIP 846

Query: 1100 ENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV-----------QLSGG 1148
               +     +  +  +   +A  +  F     +  + H    G+            LSGG
Sbjct: 847  RG-ELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGG 905

Query: 1149 QKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRN 1208
            QK ++ +A    + P +++LDE T+ LD  S   + +AL +       I++ H     +N
Sbjct: 906  QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKN 963

Query: 1209 -ADKIAVLQQGKV 1220
              +++  ++ G++
Sbjct: 964  LTEEVWAVKDGRM 976

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           ++ + + F YP        ++NF        A +GP+G+GKST+I+++     PTSG++ 
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731

Query: 437 LDGHDLK 443
               + +
Sbjct: 732 T-HENCR 737

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 48.1 bits (114), Expect = 2e-05
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 1002 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061
             K  +++ N+ F+YP         ++N + S    +AV+G +G+GKST+I+++     P 
Sbjct: 668  QKAIVKVTNMEFQYP-GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726

Query: 1062 SGTV 1065
            SG V
Sbjct: 727  SGEV 730

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 67.2 bits (165), Expect = 3e-12
 Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 25/214 (11%)

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIIS--MVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           +N  V  G+  A +GP+G+GKST+         Y    G+ILLDG ++  L     R + 
Sbjct: 22  VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP-DERARK 80

Query: 455 G--LVSQEP--------ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
           G  L  Q P        A F             +     V E          +    + Y
Sbjct: 81  GLFLAFQYPVEVPGVTIANFLRLALQAK--LGREVG---VAEFWTKVKKALELLDWDESY 135

Query: 505 -QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS- 562
               + EG    SGG+K+R  I + ++  P   +LDE  S LD ++  +V R +  +   
Sbjct: 136 LSRYLNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP 192

Query: 563 NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 594
           N   +V+ H  R+      D + V+ +G+VV +G
Sbjct: 193 NFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 27/225 (12%)

Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTLNL 1077
              TI + +NL V  G   A++G +G+GKST+  ++     Y    G +L+DG +I  L+ 
Sbjct: 15   GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74

Query: 1078 --RSLRRKIGLVQQEP--------ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFI 1127
              R+ R+ + L  Q P        A F     +       +    E     K A     +
Sbjct: 75   DERA-RKGLFLAFQYPVEVPGVTIANFLRLALQAK--LGREVGVAEFWTKVKKALE---L 128

Query: 1128 SRMPEGYQSHVGDRGVQ--LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1185
                E Y      R +    SGG+K+R  I + ++  P+  +LDE  S LD  +  ++  
Sbjct: 129  LDWDESY----LSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184

Query: 1186 ALDKLM-EGRTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGSHE 1227
             ++ +       +++ H  R+      DK+ V+  G+V   G  E
Sbjct: 185  GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 67.2 bits (165), Expect = 4e-12
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 21/214 (9%)

Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIIS--MVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
           L+  V  G+  A +GP+GSGKST+ +    +  YE T G +   G DL +L     R   
Sbjct: 39  LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP-EDRAGE 97

Query: 455 G--LVSQEP--------ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
           G  +  Q P          F  +  N +   +   ++DR  +          +  +P+  
Sbjct: 98  GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDR-FDFQDLMEEKIALLKMPEDL 156

Query: 505 -QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS- 562
               V  G    SGG+K+R  I +  +  P++ +LDE+ S LD ++  +V   +  +   
Sbjct: 157 LTRSVNVG---FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG 213

Query: 563 NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 594
            R+ I+V H  R+      D + VL  G++V+SG
Sbjct: 214 KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 27/240 (11%)

Query: 1020 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTL-- 1075
            D  I   L+L V  G   A++G +GSGKST+ + +     Y+   GTV   G D+  L  
Sbjct: 32   DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91

Query: 1076 NLRSLRRKIGLVQQEP--------ALFSTTIYENIK--YGNEDASEIELMKATKAANAHG 1125
              R+    I +  Q P          F  T    ++   G E     +     +   A  
Sbjct: 92   EDRA-GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA-- 148

Query: 1126 FISRMPEGYQSHVGDRGVQ--LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
             + +MPE   +    R V    SGG+K+R  I +  +  P + +LDE+ S LD  +  ++
Sbjct: 149  -LLKMPEDLLT----RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 203

Query: 1184 QEALDKLM-EGRTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1240
             + ++ L    R+ I+V H  R+      D + VL QG++ + G    + + E   Y  L
Sbjct: 204  ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWL 263

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 4e-12
 Identities = 65/400 (16%), Positives = 115/400 (28%), Gaps = 117/400 (29%)

Query: 907  HISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALA 966
            HI      VS  L L       W     +  K      +++ F+          E   L 
Sbjct: 53   HIIMSKDAVSGTLRL------FW----TLLSKQEE---MVQKFV----------EE-VLR 88

Query: 967  PDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVS--F-KYPV-RPD-- 1020
             +           +  L      +   P+      I+    L N +  F KY V R    
Sbjct: 89   IN-----------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR-------FYDPI----SGTVLIDG 1069
            + + + L L++   +++ + G  GSGK+ V   V             I            
Sbjct: 138  LKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 1070 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEI-ELMKATKAANA----- 1123
              +  L    L  +I       +  S+ I   I   +   +E+  L+K+    N      
Sbjct: 197  TVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENCLLVLL 251

Query: 1124 --------HGF--------ISRMPEGYQSHVGDRGV--QLSGGQKQRVAIARAILKNPSI 1165
                    + F         +R           + V   LS      +++      +   
Sbjct: 252  NVQNAKAWNAFNLSCKILLTTR----------FKQVTDFLSAATTTHISLD----HHSMT 297

Query: 1166 LLLDEATS----ALDTASENLIQEALDKL-----MEGRTTIMVAHRLSTIRNADKIAVLQ 1216
            L  DE  S     LD   ++L +E L        +       +   L+T  N   +   +
Sbjct: 298  LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---SIRDGLATWDNWKHVNCDK 354

Query: 1217 QGKVAEIGSHEQL----LRKENGIYKQLIRLQQDKN-PEA 1251
               + E  S   L     RK   ++ +L       + P  
Sbjct: 355  LTTIIES-SLNVLEPAEYRK---MFDRLSVFPPSAHIPTI 390

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 2e-09
 Identities = 71/462 (15%), Positives = 133/462 (28%), Gaps = 137/462 (29%)

Query: 422 SMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL------G 475
           SM+ R+Y     ++  D        +   R Q  L  ++ AL     A N+L+      G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQPYLKLRQ-ALLELRPAKNVLIDGVLGSG 162

Query: 476 KEDASMDRVIEAAKAANAHSFVEGLPDG------------------YQT---QVGEGGTQ 514
           K        + A     ++     +                      Q    Q+    T 
Sbjct: 163 KT------WV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 515 L---SGGQKQRIAIARAVLRN-------PKILL-LDEATSALDAESELIVQRALEKIMSN 563
               S   K RI   +A LR           LL L       + ++            + 
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL------NVQNAKAW-----NAFNL 264

Query: 564 RTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLI--SKG---GEYAAL----VNLQS 614
              I++     T R       L         TH+ L   S      E  +L    ++ + 
Sbjct: 265 SCKILL-----TTRFKQVTDFLSAATT----THISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 615 SE-----HLSNPSSICYSGSSRYSSFRDFPSS----RRYDVE-----FESS----KRREL 656
            +       +NP  +     S     RD  ++    +  + +      ESS    +  E 
Sbjct: 316 QDLPREVLTTNPRRLSIIAES----IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 657 QSSDQSFA--P-----SPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILT 709
           +      +  P        +  L+      W   +   V  ++  +    ++L       
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLI------WFDVIKSDVMVVVNKLHK--YSLVEKQPKE 423

Query: 710 AFYSPHDSQI-------------KRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLT 756
           +  S     +             + +VD   +         +    L  YFY+ +G HL 
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIP-KTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 757 ARV---RLSMFSAI------LSNEIGWFDLDENNTGLLISTL 789
                 R+++F  +      L  +I       N +G +++TL
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 9e-09
 Identities = 99/714 (13%), Positives = 205/714 (28%), Gaps = 207/714 (28%)

Query: 538  LDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV---RDVDTIMVLKNGQVVESG 594
            +D  T     + + I+    +  + N     V     ++    ++D I++ K+     SG
Sbjct: 7    MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSG 63

Query: 595  THV---DLISKGGE-YAALVNLQSSEHLSNPSSICYSGSSRYSSFRDFPSSRRYDVEFES 650
            T      L+SK  E     V     E +   +   Y      S  +              
Sbjct: 64   TLRLFWTLLSKQEEMVQKFV-----EEVLRIN---YK--FLMSPIKTEQRQPSMMTRMYI 113

Query: 651  SKRRELQSSDQSFAP-----SPSIWE----LLKLNAAEWPYAVLGSVGA---ILAG---- 694
             +R  L + +Q FA           +    LL+L  A+    + G +G+    +A     
Sbjct: 114  EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVCL 172

Query: 695  -------MEAPLF--ALG-------ITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTI 738
                   M+  +F   L        +  +L       D       D  + I        +
Sbjct: 173  SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-------KL 225

Query: 739  PVYLLQHYFYTLMGEHLTARVRLSMFSAILSN----EIGW--FDLDENNTG---LLISTL 789
             ++ +Q     L+         L     +L N    +  W  F+L         LL +  
Sbjct: 226  RIHSIQAELRRLLKSKPYENCLL-----VLLNVQNAKA-WNAFNL-----SCKILLTTRF 274

Query: 790  AADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW------RLAAVVAASLPLLIGAF 843
                  + +A    +S+   ++ LT    V + +L +       L   V  + P  + + 
Sbjct: 275  KQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SI 332

Query: 844  VAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFAS--ELSQPNKQ 901
            +AE +                    R+ +A          +K  +I  +S   L     +
Sbjct: 333  IAESI--------------------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 902  ALLRGHISGFGYGV---SQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALA 958
             +    +S F       + LLSL      +W+               +    V+++    
Sbjct: 373  KMFD-RLSVFPPSAHIPTILLSL------IWFD--------------VIKSDVMVVVNKL 411

Query: 959  VAETLALAPDIVKGSQALGPVFGI--LYRKTAIQPDDPASKEVTEIKGNIELRNVSFKY- 1015
               +L          Q       I  +Y +  ++ ++  +      +  ++  N+   + 
Sbjct: 412  HKYSLVE-------KQPKESTISIPSIYLELKVKLENEYALH----RSIVDHYNIPKTFD 460

Query: 1016 -----PVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY 1070
                 P   D   + ++      G  L  +          ++L    +            
Sbjct: 461  SDDLIPPYLDQYFYSHI------GHHLKNIEHPER-----MTLFRMVF------------ 497

Query: 1071 DIRTLNLRSLRRKI---GLVQQEPALFSTTIYENIKYG-----NEDASEIELMKATKAAN 1122
                L+ R L +KI               T+ +   Y      N+   E  L+ A     
Sbjct: 498  ----LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILD-- 550

Query: 1123 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALD 1176
               F+ ++ E          ++++             L      + +EA   + 
Sbjct: 551  ---FLPKIEENLICSKYTDLLRIA-------------LMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 3e-06
 Identities = 76/508 (14%), Positives = 140/508 (27%), Gaps = 162/508 (31%)

Query: 88  HRLTSRISE--HALYLVYLG--------LVALVSAWIGV-------AFWMQTGERQTARL 130
            +L   + E   A  ++  G        +   V     V        FW+      +   
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 131 RLKYLQSVLKK-DMSFFDTEARDSNIIFHISS---------------DAILVQDAIGDKT 174
            L+ LQ +L + D ++       SNI   I S               + +LV   + +  
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 175 GHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMS--------TLSEK 226
             A          F +         LLT     +      A T  +S        T  E 
Sbjct: 258 --AWNA-------FNLSCK-----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 227 GE--AAYGEAGKVAEEIISQVRA----VYAFVGEAKA-----IESYSHSLKEALKQGKKS 275
                 Y       +++  +V        + + E+        +++ H   + L    +S
Sbjct: 304 KSLLLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 276 GVAK-------------GI---GVGLTYGLLFCAWALLLWYAGI----------LVRHGD 309
            +                +      +   LL      L+W+  I          L ++  
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-----SLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 310 TNG-GKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIKENSHSSERPGDDGI 368
                K  T  I  I+    L     N  A+ +         SI+   +       DD +
Sbjct: 417 VEKQPKESTISIPSIY--LELKVKLENEYALHR---------SIVDHYNIPKTFDSDD-L 464

Query: 369 TLPKLAGQIEFSEVCFAYPSRPHM--------------VFENLNFSVDAGKTFAFVGPSG 414
             P L     +S     +    H+              VF +  F ++  K       + 
Sbjct: 465 IPPYLDQYF-YSH--IGH----HLKNIEHPERMTLFRMVFLDFRF-LEQ-K-IRHDSTAW 514

Query: 415 SGKSTIISMVQRL--YEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI 472
           +   +I++ +Q+L  Y+      + D        +  + +           F   I  N+
Sbjct: 515 NASGSILNTLQQLKFYK----PYICDNDPKYERLVNAILD-----------FLPKIEENL 559

Query: 473 LLGKE-D----ASMDR----VIEAAKAA 491
           +  K  D    A M        EA K  
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 5e-06
 Identities = 58/435 (13%), Positives = 129/435 (29%), Gaps = 145/435 (33%)

Query: 422 SMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA--------NNIL 473
            MVQ+  E           ++  +  K+L   +    ++P++              +N +
Sbjct: 77  EMVQKFVE-----------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 474 LGKEDASMDRVIEAAKAANAHSFVEGL-PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532
             K + S  +     + A     +  L P       G  G   SG  K  +A+   V  +
Sbjct: 126 FAKYNVSRLQPYLKLRQA-----LLELRPAKNVLIDGVLG---SG--KTWVAL--DVCLS 173

Query: 533 PKILLLDE-----ATSALDAESELIV---QRALEKIMSNRTTIV-----VAHRLSTVRD- 578
            K+    +              E ++   Q+ L +I  N T+       +  R+ +++  
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 579 ----------VDTIMVLKNGQVVESGTHV---DLISKGGEYAALVNLQSSEHLSNPSSIC 625
                      + ++VL N   V++       +L  K      L+               
Sbjct: 234 LRRLLKSKPYENCLLVLLN---VQNAKAWNAFNLSCK-----ILL--------------- 270

Query: 626 YSGSSRYSSFRDFPSSRRYDVEFESSKRRELQSSDQSFAPSPSIWELLKLNAAEW----- 680
              ++R+    DF S+              L     +  P      LL     ++     
Sbjct: 271 ---TTRFKQVTDFLSAATT-------THISLDHHSMTLTPDEVK-SLL----LKYLDCRP 315

Query: 681 ----PYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRV----VDQVALIFVG 732
                  +  +          P   L    I+        +          D++  I + 
Sbjct: 316 QDLPREVLTTN----------PR-RLS---IIAESIRDGLATWDNWKHVNCDKLTTI-IE 360

Query: 733 LAVVTIPVYLLQHYFYTLM----GEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLIST 788
            ++  +     +  F  L       H+   + LS+          WFD+ +++  ++++ 
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLI---------WFDVIKSDVMVVVN- 409

Query: 789 LAADATLVRSALADR 803
                 L + +L ++
Sbjct: 410 -----KLHKYSLVEK 419

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 62.8 bits (152), Expect = 2e-10
 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 15/161 (9%)

Query: 1067 IDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA---NA 1123
            +D ++     L  L+   G  ++             +       E+      +      +
Sbjct: 163  LDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYS 222

Query: 1124 HGFISRMPEGYQSHVGDRGV-----QLSGGQKQRV------AIARAILKNPSILLLDEAT 1172
               +       +  V   G       LSGG++  +      A++  +    S+L+LDE T
Sbjct: 223  EVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT 282

Query: 1173 SALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRNADKI 1212
              LD      +   +++ ++     I+V+H       AD +
Sbjct: 283  PYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 51.2 bits (122), Expect = 1e-06
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 513 TQLSGGQKQ------RIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RT 565
           T LSGG++       R+A++  +     +L+LDE T  LD E    +   +E+ +     
Sbjct: 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 306

Query: 566 TIVVAHRLSTVRDVDTIMVLK 586
            I+V+H        D ++ + 
Sbjct: 307 VILVSHDEELKDAADHVIRIS 327

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 1144 QLSGGQKQRVAIA------RAILKNPSILLLDEATSALDTASENLIQEALDKLME-GRTT 1196
             LSGG++  + +A        +    S+L+LDE T  LD      +   +++ ++     
Sbjct: 57   FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116

Query: 1197 IMVAHRLSTIRNADKI 1212
            I+V+H       AD +
Sbjct: 117  ILVSHDEELKDAADHV 132

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 503 GYQTQVGEGGTQLSGGQKQRIAIA------RAVLRNPKILLLDEATSALDAESELIVQRA 556
            ++       T LSGG++  + +A        +     +L+LDE T  LD E    +   
Sbjct: 47  VWEG-KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI 105

Query: 557 LEKIMSN-RTTIVVAHRLSTVRDVDTI 582
           +E+ +      I+V+H        D +
Sbjct: 106 MERYLKKIPQVILVSHDEELKDAADHV 132

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 11/151 (7%)

Query: 1076 NLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 1135
             L  +RR  G    +  L    +    KY NE  SE +L  +         +        
Sbjct: 216  YLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGV 275

Query: 1136 SHVGDRGVQLSGGQKQRVAIARAI-------LKNPSILLLDEATSALDTASENLIQEALD 1188
              +      LSGG++  VA++  +             ++LDE T  LD      + E   
Sbjct: 276  LTID----NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFR 331

Query: 1189 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGK 1219
            K+      I++ H       AD I  +++  
Sbjct: 332  KVKSIPQMIIITHHRELEDVADVIINVKKDG 362

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 514 QLSGGQKQRI------AIARAVLRNP-KILLLDEATSALDAESELIVQRALEKIMSNRTT 566
            LSGG++  +      AIA A++ N  + ++LDE T  LD      +     K+ S    
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339

Query: 567 IVVAHRLSTVRDVDT-IMVLKNGQV 590
           I++ H        D  I V K+G V
Sbjct: 340 IIITHHRELEDVADVIINVKKDGNV 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1253
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-102
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-100
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-96
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	6e-96
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	8e-91
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	3e-88
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	8e-90
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-85
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	6e-87
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	5e-85
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	5e-75
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-74
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	1e-53
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	3e-52
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	3e-49
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	5e-45
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	8e-46
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	6e-43
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	1e-45
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	5e-45
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-45
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-43
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	6e-40
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	7e-36
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	8e-40
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	5e-38
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	6e-39
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	8e-37
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-38
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	4e-37
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-38
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	6e-36
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-37
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	7e-36
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	1e-35
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	3e-34
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	8e-35
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	2e-33
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	4e-34
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	5e-32
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-25
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	3e-24
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-12
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-10
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	6e-12
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-10
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	7e-05
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	7e-08
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-06
d2hyda2	323	f.37.1.1 (A:1-323) Putative multidrug export ATP-b	3e-05
d3b60a2	319	f.37.1.1 (A:10-328) Multidrug resistance ABC trans	3e-05
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	5e-04

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  322 bits (826), Expect = e-102
 Identities = 127/254 (50%), Positives = 180/254 (70%), Gaps = 2/254 (0%)

Query: 992  DDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVI 1051
            +   ++ +   +G I++ +VSF+Y    +  I +++NL +  G ++A VG SG GKST+I
Sbjct: 3    NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61

Query: 1052 SLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASE 1111
            +L+ RFYD  SG +LIDG++I+     SLR +IGLVQQ+  LFS T+ ENI  G   A++
Sbjct: 62   NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
             E+++A K ANAH FI  +P+GY + VG+RGV+LSGGQKQR++IAR  L NP IL+LDEA
Sbjct: 122  EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 181

Query: 1172 TSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231
            TSALD  SE++IQEALD L + RTT++VAHRLSTI +ADKI V++ G + E G+H +L+ 
Sbjct: 182  TSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241

Query: 1232 KENGIYKQLIRLQQ 1245
            K  G Y+ L  +Q 
Sbjct: 242  K-QGAYEHLYSIQN 254

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  317 bits (814), Expect = e-100
 Identities = 124/245 (50%), Positives = 175/245 (71%)

Query: 370 LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429
           +    G+I+   V F Y      + +++N S++ G+T AFVG SG GKST+I+++ R Y+
Sbjct: 10  IEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 69

Query: 430 PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAK 489
            TSG+IL+DGH++K      LR Q+GLV Q+  LF+ ++  NILLG+  A+ + V+EAAK
Sbjct: 70  VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAK 129

Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
            ANAH F+  LP GY T+VGE G +LSGGQKQR++IAR  L NP IL+LDEATSALD ES
Sbjct: 130 MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 189

Query: 550 ELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAAL 609
           E I+Q AL+ +  +RTT++VAHRLST+   D I+V++NG +VE+GTH +LI+K G Y  L
Sbjct: 190 ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 249

Query: 610 VNLQS 614
            ++Q+
Sbjct: 250 YSIQN 254

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  306 bits (786), Expect = 1e-96
 Identities = 122/252 (48%), Positives = 168/252 (66%), Gaps = 2/252 (0%)

Query: 365 DDG-ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISM 423
           D+G   + +  G +EF  V F YP R      N+N  + AGKT A VG SGSGKSTI S+
Sbjct: 1   DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60

Query: 424 VQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDASMD 482
           + R Y+   G IL+DGHDL+   L  LR Q+ LVSQ   LF  ++ANNI   + E+ S +
Sbjct: 61  ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120

Query: 483 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEAT 542
           ++ EAA+ A A  F+  + +G  T +GE G  LSGGQ+QRIAIARA+LR+  IL+LDEAT
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180

Query: 543 SALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602
           SALD ESE  +Q AL+++  NRT++V+AHRLST+   D I+V+++G +VE GTH +L+++
Sbjct: 181 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240

Query: 603 GGEYAALVNLQS 614
            G YA L  +Q 
Sbjct: 241 HGVYAQLHKMQF 252

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  305 bits (782), Expect = 6e-96
 Identities = 120/253 (47%), Positives = 177/253 (69%), Gaps = 3/253 (1%)

Query: 993  DPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVIS 1052
            D   + +    G++E RNV+F YP R ++    N+NLK+ AG+++A+VG+SGSGKST+ S
Sbjct: 1    DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59

Query: 1053 LVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN-EDASE 1111
            L+ RFYD   G +L+DG+D+R   L SLR ++ LV Q   LF+ T+  NI Y   E+ S 
Sbjct: 60   LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119

Query: 1112 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171
             ++ +A + A A  FI++M  G  + +G+ GV LSGGQ+QR+AIARA+L++  IL+LDEA
Sbjct: 120  EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179

Query: 1172 TSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1231
            TSALDT SE  IQ ALD+L + RT++++AHRLSTI  AD+I V++ G + E G+H +LL 
Sbjct: 180  TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239

Query: 1232 KENGIYKQLIRLQ 1244
            + +G+Y QL ++Q
Sbjct: 240  Q-HGVYAQLHKMQ 251

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  291 bits (745), Expect = 8e-91
 Identities = 94/245 (38%), Positives = 150/245 (61%), Gaps = 4/245 (1%)

Query: 1001 EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060
             ++G ++ ++VSF YP RPD+ + + L   +  G   A+VG +GSGKSTV +L+   Y P
Sbjct: 7    HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66

Query: 1061 ISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-NEDASEIELMKATK 1119
              G +L+DG  +     R L R++  V QEP +F  ++ ENI YG  +  +  E+  A  
Sbjct: 67   TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 126

Query: 1120 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1179
             + AH FIS +P+GY + V + G QLSGGQ+Q VA+ARA+++ P +L+LD+ATSALD  S
Sbjct: 127  KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186

Query: 1180 ENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1237
            +  +++ L +  E   R+ +++   LS +  AD I  L+ G + E G+H+QL+ K  G Y
Sbjct: 187  QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245

Query: 1238 KQLIR 1242
              +++
Sbjct: 246  WAMVQ 250

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  284 bits (727), Expect = 3e-88
 Identities = 108/248 (43%), Positives = 162/248 (65%), Gaps = 4/248 (1%)

Query: 368 ITLPKLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426
           +T   L G ++F +V FAYP+RP  +V + L F++  G+  A VGP+GSGKST+ +++Q 
Sbjct: 3   LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62

Query: 427 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVI 485
           LY+PT G++LLDG  L   + ++L  Q+  V QEP +F  S+  NI  G  +  +M+ + 
Sbjct: 63  LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122

Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
            AA  + AHSF+ GLP GY T+V E G+QLSGGQ+Q +A+ARA++R P +L+LD+ATSAL
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182

Query: 546 DAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603
           DA S+L V++ L +     +R+ +++   LS V   D I+ L+ G + E GTH  L+ K 
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 242

Query: 604 GEYAALVN 611
           G Y A+V 
Sbjct: 243 GCYWAMVQ 250

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  287 bits (737), Expect = 8e-90
 Identities = 112/242 (46%), Positives = 165/242 (68%), Gaps = 1/242 (0%)

Query: 1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            +I  RN+ F+Y       I +N+NL +  G  + +VG+SGSGKST+  L+ RFY P +G 
Sbjct: 1    DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59

Query: 1065 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 1124
            VLIDG+D+   +   LRR++G+V Q+  L + +I +NI   N   S  +++ A K A AH
Sbjct: 60   VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
             FIS + EGY + VG++G  LSGGQ+QR+AIARA++ NP IL+ DEATSALD  SE++I 
Sbjct: 120  DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179

Query: 1185 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
              + K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL +   +Y  L +LQ
Sbjct: 180  RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239

Query: 1245 QD 1246
             D
Sbjct: 240  SD 241

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  276 bits (706), Expect = 1e-85
 Identities = 116/239 (48%), Positives = 159/239 (66%), Gaps = 1/239 (0%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           I F  + F Y     ++ +N+N S+  G+    VG SGSGKST+  ++QR Y P +G++L
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
           +DGHDL      WLR Q+G+V Q+  L   SI +NI L     S+++VI AAK A AH F
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121

Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
           +  L +GY T VGE G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R 
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181

Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQS 614
           + KI   RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+    Y+ L  LQS
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  279 bits (716), Expect = 6e-87
 Identities = 102/240 (42%), Positives = 158/240 (65%), Gaps = 4/240 (1%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +  R+V F Y       I  +++ +      +A  G SG GKST+ SL+ RFY P +G +
Sbjct: 2    LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAH 1124
             IDG  I  ++L + R +IG V Q+ A+ + TI EN+ YG E D ++ +L +    A A 
Sbjct: 60   TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
             F+  MP+   + VG+RGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ SE+++Q
Sbjct: 120  SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 1185 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244
            +ALD LM+GRTT+++AHRLSTI +ADKI  +++G++   G H +L+   + +Y + +  Q
Sbjct: 180  KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  274 bits (702), Expect = 5e-85
 Identities = 108/240 (45%), Positives = 158/240 (65%), Gaps = 2/240 (0%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +    V FAY      +  +++F        AF GPSG GKSTI S+++R Y+PT+G+I 
Sbjct: 2   LSARHVDFAYDDSEQ-ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHS 495
           +DG  + ++ L+  R Q+G VSQ+ A+ A +I  N+  G E D + + + +    A A S
Sbjct: 61  IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
           FVE +PD   T+VGE G ++SGGQ+QR+AIARA LRNPKIL+LDEAT++LD+ESE +VQ+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180

Query: 556 ALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 615
           AL+ +M  RTT+V+AHRLST+ D D I  ++ GQ+  SG H +L++    YA  V+ Q +
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQLT 240

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  248 bits (634), Expect = 5e-75
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 20/256 (7%)

Query: 991  PDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTV 1050
                  ++ +  + N+   ++       P   + +N+NL +  G  LA+ G +GSGK+++
Sbjct: 24   QQSNGDRKHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEMLAITGSTGSGKTSL 78

Query: 1051 ISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 1110
            + L++   +   G +   G             ++    Q   +   TI ENI +G     
Sbjct: 79   LMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVS-YD 124

Query: 1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170
            E       KA      I++  E   + +G+ GV LSGGQ+ R+++ARA+ K+  + LLD 
Sbjct: 125  EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 184

Query: 1171 ATSALDTAS-ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1229
                LD  + E + +  + KLM  +T I+V  ++  +R ADKI +L QG     G+  +L
Sbjct: 185  PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 244

Query: 1230 LRKENGIYKQLIRLQQ 1245
                     +L+    
Sbjct: 245  QSLRPDFSSKLMGYDT 260

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  246 bits (629), Expect = 2e-74
 Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 20/257 (7%)

Query: 365 DDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMV 424
           +           + FS +C      P  V +N+N +++ G+  A  G +GSGK++++ ++
Sbjct: 27  NGDRKHSSDENNVSFSHLCLVG--NP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 82

Query: 425 QRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRV 484
               E + G I   G             ++   SQ   +   +I  NI+ G       R 
Sbjct: 83  LGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVS-YDEYRY 128

Query: 485 IEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSA 544
               KA      +    +   T +GEGG  LSGGQ+ RI++ARAV ++  + LLD     
Sbjct: 129 KSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188

Query: 545 LDAES-ELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603
           LD  + E + +  + K+M+N+T I+V  ++  +R  D I++L  G     GT  +L S  
Sbjct: 189 LDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR 248

Query: 604 GEYAA-LVNLQSSEHLS 619
            ++++ L+   + +  +
Sbjct: 249 PDFSSKLMGYDTFDQFT 265

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  185 bits (470), Expect = 1e-53
 Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 13/229 (5%)

Query: 1006 IELRNVSFKYPVR-PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I+L+NV+  Y +    I   +N+NL +  G  ++++G SGSGKST+++++     P  G 
Sbjct: 2    IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 1065 VLIDGYDIRTLNLRSLRR----KIGLVQQEPALF-STTIYENIKYGNEDA--SEIELMKA 1117
            V ID      L+   L +    KIG V Q+  L    T  EN++          +   + 
Sbjct: 62   VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121

Query: 1118 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1177
             K A     ++ + E + +H   +  QLSGGQ+QRVAIARA+  NP I+L D+ T ALD+
Sbjct: 122  RKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178

Query: 1178 ASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIG 1224
             +   I + L KL E  G+T ++V H ++  R  ++I  L+ G+V    
Sbjct: 179  KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  181 bits (460), Expect = 3e-52
 Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 14/230 (6%)

Query: 377 IEFSEVCFAYPS--RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           I+   V   Y          +N+N ++  G+  + +GPSGSGKST+++++  L +PT G+
Sbjct: 2   IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 435 ILLDGHDLKSL----QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVI--EA 487
           + +D      L      K  R+++G V Q+  L    +   N+ L         +   E 
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121

Query: 488 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
            K A     +  L + +         QLSGGQ+QR+AIARA+  NP I+L D+ T ALD+
Sbjct: 122 RKRALECLKMAELEERFANHK---PNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178

Query: 548 ESELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT 595
           ++   + + L+K+     +T +VV H ++  R  + I+ LK+G+V     
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  172 bits (437), Expect = 3e-49
 Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 28/239 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            ++L++V+         T    L+ +V AG  L +VG +G+GKST+++ +        G++
Sbjct: 4    MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPAL-FSTTIYENIKYGNEDASEIELMKATKAANAH 1124
               G  +   +   L      + Q+    F+T ++  +     D +  EL+     A   
Sbjct: 56   QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK-------NPSILLLDEATSALDT 1177
                         +G    QLSGG+ QRV +A  +L+          +LLLDE  ++LD 
Sbjct: 114  --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165

Query: 1178 ASENLIQEALDKLM-EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1234
            A ++ + + L  L  +G   +M +H L+ T+R+A +  +L+ GK+   G  E++L   N
Sbjct: 166  AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  160 bits (406), Expect = 5e-45
 Identities = 52/236 (22%), Positives = 102/236 (43%), Gaps = 27/236 (11%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           ++  +V  +           L+  V AG+    VGP+G+GKST+++ +  +     G I 
Sbjct: 4   MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 56

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHS 495
             G  L++     L      +SQ+    FAT + + + L + D +   ++     A    
Sbjct: 57  FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--- 113

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR-------NPKILLLDEATSALDAE 548
                      ++G    QLSGG+ QR+ +A  VL+         ++LLLDE  ++LD  
Sbjct: 114 -------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166

Query: 549 SELIVQRALEKIM-SNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
            +  + + L  +       ++ +H L+          +LK G+++ SG   ++++ 
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  163 bits (413), Expect = 8e-46
 Identities = 77/241 (31%), Positives = 119/241 (49%), Gaps = 25/241 (10%)

Query: 1006 IELRNVSFKYPVRP-DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064
            I+L N++  +      I    N++L V AG+   V+G SG+GKST+I  V     P  G+
Sbjct: 2    IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 1065 VLIDGYDIRTLN---LRSLRRKIGLVQQEPALF-STTIYENIKYG------NEDASEIEL 1114
            VL+DG ++ TL+   L   RR+IG++ Q   L  S T++ N+          +D  +  +
Sbjct: 62   VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121

Query: 1115 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174
             +              P             LSGGQKQRVAIARA+  NP +LL DEATSA
Sbjct: 122  TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170

Query: 1175 LDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231
            LD A+   I E L  +    G T +++ H +  ++   D +AV+  G++ E  +  ++  
Sbjct: 171  LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230

Query: 1232 K 1232
             
Sbjct: 231  H 231

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  154 bits (391), Expect = 6e-43
 Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 14/235 (5%)

Query: 377 IEFSEVCFAYPSRPHMV--FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           I+ S +   +      +    N++  V AG+ +  +G SG+GKST+I  V  L  PT G 
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 435 ILLDGHDLKSL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKA 490
           +L+DG +L +L   +L   R Q+G++ Q   L ++ ++  N+ L  E  +  +     + 
Sbjct: 62  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121

Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
               S V GL D + +        LSGGQKQR+AIARA+  NPK+LL DEATSALD  + 
Sbjct: 122 TELLSLV-GLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176

Query: 551 LIVQRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
             +   L+ I      T +++ H +  V+ + D + V+ NG+++E  T  ++ S 
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  162 bits (411), Expect = 1e-45
 Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 27/247 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            ++L N++ ++    + T    LNL +  G  L ++G SG GK+T + ++    +P  G +
Sbjct: 7    VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYG------NEDASEIELMKAT 1118
                 D+    L    R I +V Q  A++   T+YENI +        +D  +  +  A 
Sbjct: 64   YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            +       ++R P            QLSGGQ+QRVA+ARAI+  P +LL+DE  S LD  
Sbjct: 122  ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170

Query: 1179 SENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENG 1235
                ++  + KL      TTI V H         D+IAV+ +G++ +IGS  ++  + N 
Sbjct: 171  LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230

Query: 1236 IY-KQLI 1241
            ++    I
Sbjct: 231  VFVATFI 237

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  160 bits (407), Expect = 5e-45
 Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 13/231 (5%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           +++   +   + +        LN ++  G+    +GPSG GK+T + M+  L EPT G+I
Sbjct: 6   EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAH 494
                D+    L      + +V Q  A++   ++  NI    +     +     +   A 
Sbjct: 64  YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121

Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
             +  + +           QLSGGQ+QR+A+ARA++  P +LL+DE  S LDA+  + ++
Sbjct: 122 ELL-QIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176

Query: 555 RALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
             ++K+      TTI V H       + D I V+  GQ+++ G+  ++  +
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  162 bits (412), Expect = 2e-45
 Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 32/248 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + + ++  +Y       + + ++L+  AG  ++++G SGSGKST +  +     P  G +
Sbjct: 3    LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59

Query: 1066 LIDGYDIRTLN-------------LRSLRRKIGLVQQEPALFST-TIYENI-----KYGN 1106
            +++G +I  +              LR LR ++ +V Q   L+S  T+ EN+     +   
Sbjct: 60   IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119

Query: 1107 EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSIL 1166
                +    +A K     G   R    Y          LSGGQ+QRV+IARA+   P +L
Sbjct: 120  LSKHDAR-ERALKYLAKVGIDERAQGKYPV-------HLSGGQQQRVSIARALAMEPDVL 171

Query: 1167 LLDEATSALD-TASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224
            L DE TSALD      +++       EG+T ++V H +   R+ +  +  L QGK+ E G
Sbjct: 172  LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231

Query: 1225 SHEQLLRK 1232
              EQ+   
Sbjct: 232  DPEQVFGN 239

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  156 bits (397), Expect = 2e-43
 Identities = 60/244 (24%), Positives = 114/244 (46%), Gaps = 23/244 (9%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           ++   ++   Y      V + ++    AG   + +G SGSGKST +  +  L +P+ G I
Sbjct: 2   KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59

Query: 436 LLDGHDLKSL-------------QLKWLREQMGLVSQEPALFAT-SIANNILLG-KEDAS 480
           +++G ++  +             QL+ LR ++ +V Q   L++  ++  N++    +   
Sbjct: 60  IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119

Query: 481 MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDE 540
           + +     +A    + V G+ +  Q +       LSGGQ+QR++IARA+   P +LL DE
Sbjct: 120 LSKHDARERALKYLAKV-GIDERAQGKY---PVHLSGGQQQRVSIARALAMEPDVLLFDE 175

Query: 541 ATSALDA-ESELIVQRALEKIMSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVD 598
            TSALD      +++   +     +T +VV H +   R V   ++ L  G++ E G    
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235

Query: 599 LISK 602
           +   
Sbjct: 236 VFGN 239

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  144 bits (365), Expect = 6e-40
 Identities = 40/217 (18%), Positives = 99/217 (45%), Gaps = 27/217 (12%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E+R++S  Y    D  + E + + +  G  +   G +G GK+T++  +  +  P+ G +
Sbjct: 3    LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNE----DASEIELMKATKA 1120
            + +G  I       ++ KI  + +E  +    ++ + +K          ++ E+M A ++
Sbjct: 59   IYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113

Query: 1121 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
                             +  +  +LS G  +RV +A  +L N  I +LD+   A+D  S+
Sbjct: 114  VEVL------------DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161

Query: 1181 NLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1217
            + + +++ ++++ +  ++++ R   +   D    L +
Sbjct: 162  HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  133 bits (335), Expect = 7e-36
 Identities = 35/202 (17%), Positives = 92/202 (45%), Gaps = 25/202 (12%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           ++E  ++   Y      V E +  +++ G    F GP+G GK+T++  +    +P  G+I
Sbjct: 2   KLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58

Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKE----DASMDRVIEAAKA 490
           + +G       +  ++ ++  + +E  +    S+ + +           + + +++A ++
Sbjct: 59  IYNGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113

Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
                              +   +LS G  +R+ +A  +L N +I +LD+   A+D +S+
Sbjct: 114 VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161

Query: 551 LIVQRALEKIMSNRTTIVVAHR 572
             V +++ +I+  +  ++++ R
Sbjct: 162 HKVLKSILEILKEKGIVIISSR 183

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  145 bits (368), Expect = 8e-40
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 28/241 (11%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            + L +V   +    ++T    ++L+V  G  + ++G SG GK+T + ++    +P  G +
Sbjct: 4    VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60

Query: 1066 LIDGYDIRTLNLRSLRR----KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAA 1121
             I    +               I +V Q  AL+      +         ++   +  +  
Sbjct: 61   YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120

Query: 1122 NA-------HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSA 1174
                        ++R P            +LSGGQ+QRVA+ RAI++ P + L+DE  S 
Sbjct: 121  REVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169

Query: 1175 LDTASENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231
            LD      ++  L KL    G TTI V H         D+IAV+ +G + ++GS +++  
Sbjct: 170  LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229

Query: 1232 K 1232
            K
Sbjct: 230  K 230

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  140 bits (355), Expect = 5e-38
 Identities = 57/234 (24%), Positives = 103/234 (44%), Gaps = 15/234 (6%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +   +V   +          ++  V  G+    +GPSG GK+T + M+  L EP+ G+I 
Sbjct: 4   VRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61

Query: 437 LDGHDLKSLQLKWLRE----QMGLVSQEPALFATSIAN-NILLGKEDASMDRVIEAAKAA 491
           +    +   +           + +V Q  AL+       NI    +   + R     +  
Sbjct: 62  IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121

Query: 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
                + GL +    +      +LSGGQ+QR+A+ RA++R P++ L+DE  S LDA+  +
Sbjct: 122 EVAELL-GLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176

Query: 552 IVQRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
            ++  L+K+      TTI V H       + D I V+  G + + G+  ++  K
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  143 bits (361), Expect = 6e-39
 Identities = 51/249 (20%), Positives = 117/249 (46%), Gaps = 21/249 (8%)

Query: 1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063
            G + ++++  +        I + ++ ++  G    ++G +G+GK+T + ++     P SG
Sbjct: 1    GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57

Query: 1064 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAAN 1122
             V + G ++       +R+ I  + +E   +      E +++            A+ ++ 
Sbjct: 58   IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG-------FYASSSSE 109

Query: 1123 AHGFISRMPE--GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1180
                + R  E  G    + DR    S G  +++ IARA++ NP + +LDE TS LD  + 
Sbjct: 110  IEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 169

Query: 1181 NLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENG--- 1235
              +++ L +   EG T ++ +H +  +    D+IA++  G + E G+ E+L  +      
Sbjct: 170  REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229

Query: 1236 --IYKQLIR 1242
              +++++++
Sbjct: 230  EEVFEEVVK 238

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  137 bits (345), Expect = 8e-37
 Identities = 51/231 (22%), Positives = 109/231 (47%), Gaps = 11/231 (4%)

Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
           G +   ++      +   + + ++F ++ G+ F  +GP+G+GK+T + ++  L +P+SG 
Sbjct: 1   GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58

Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANA 493
           + + G +    +   +R+ +  + +E   +        +       +            A
Sbjct: 59  VTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117

Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
                GL +  + +V       S G  +++ IARA++ NP++ +LDE TS LD  +   V
Sbjct: 118 TEIA-GLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172

Query: 554 QRALEKIMSNRTTIV-VAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
           ++ L++      TI+  +H +  V  + D I ++ NG +VE+GT  +L  +
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  142 bits (360), Expect = 1e-38
 Identities = 51/239 (21%), Positives = 101/239 (42%), Gaps = 15/239 (6%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +   N+   +    +    + +++ V+ G    ++G +GSGKST+I+++  F     G V
Sbjct: 5    LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61

Query: 1066 LIDGYDIRTLNLRSLRRK-IGLVQQEPALF-STTIYENIKYGNE---DASEIELMKATKA 1120
              +  DI       L    I    Q P      T+ EN+  G     ++    L      
Sbjct: 62   YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121

Query: 1121 ANAHGFISRMPE-----GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1175
                  + +  +             +  +LSGGQ + V I RA++ NP ++++DE  + +
Sbjct: 122  PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181

Query: 1176 DTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
                 + I   + +L  +G T +++ HRL  + N  D + V+  G++   G  E+ ++ 
Sbjct: 182  APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  138 bits (349), Expect = 4e-37
 Identities = 51/241 (21%), Positives = 104/241 (43%), Gaps = 24/241 (9%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +    +   +        + ++ SV+ G     +GP+GSGKST+I+++    +   G++ 
Sbjct: 5   LRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62

Query: 437 LDGHDLKSLQLKWL-REQMGLVSQEPALFAT-SIANNILLGKE-------------DASM 481
            +  D+ + +   L    +    Q P      ++  N+L+G+                  
Sbjct: 63  FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122

Query: 482 DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEA 541
                  KA     F+  L   Y  + G    +LSGGQ + + I RA++ NPK++++DE 
Sbjct: 123 KEEEMVEKAFKILEFL-KLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEP 177

Query: 542 TSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 599
            + +       +   + ++ +   T +++ HRL  V +  D + V+ NGQ++  G   + 
Sbjct: 178 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237

Query: 600 I 600
           I
Sbjct: 238 I 238

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  141 bits (357), Expect = 2e-38
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 26/237 (10%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            ++L+NV+  +    ++ + +++NL +  G  +  VG SG GKST++ ++       SG +
Sbjct: 1    VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYG------NEDASEIELMKAT 1118
             I    +   +     R +G+V Q  AL+   ++ EN+ +G       ++     + +  
Sbjct: 58   FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115

Query: 1119 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1178
            +       + R P+            LSGGQ+QRVAI R ++  PS+ LLDE  S LD A
Sbjct: 116  EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164

Query: 1179 SENLIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
                ++  + +L    GRT I V H        ADKI VL  G+VA++G   +L   
Sbjct: 165  LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  134 bits (338), Expect = 6e-36
 Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 13/230 (5%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           ++   V  A+      V +++N  +  G+   FVGPSG GKST++ M+  L   TSG + 
Sbjct: 1   VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALF-ATSIANNILLGKEDASMDRVIEAAKAANAHS 495
           +    +           +G+V Q  AL+   S+A N+  G + A   + +   +      
Sbjct: 59  IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
            ++ L      +       LSGGQ+QR+AI R ++  P + LLDE  S LDA   + ++ 
Sbjct: 117 VLQ-LAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 171

Query: 556 ALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
            + ++     RT I V H       + D I+VL  G+V + G  ++L   
Sbjct: 172 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  138 bits (348), Expect = 3e-37
 Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 12/232 (5%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            +E++++   Y     I   + ++LKV  G+ + ++G +G+GK+T +S +        G +
Sbjct: 7    LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63

Query: 1066 LIDGYDIRTLNLRSLR-RKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANA 1123
            + +G DI       +    I LV +   +F   T+YEN+  G  +  + E +K       
Sbjct: 64   IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-- 121

Query: 1124 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1183
               I  +    +  +   G  LSGG++Q +AI RA++  P +L++DE +  L     + +
Sbjct: 122  ---IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178

Query: 1184 QEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKE 1233
             E + K+  EG T ++V          A    VL+ G++   G   +LL  E
Sbjct: 179  FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  134 bits (339), Expect = 7e-36
 Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 9/228 (3%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           +E   +   Y +      + ++  V  G+    +G +G+GK+T +S +  L     GKI+
Sbjct: 7   LEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64

Query: 437 LDGHDLKSL-QLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 495
            +G D+ +       R  + LV +   +F        L+       D+           S
Sbjct: 65  FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124

Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQR 555
               L +  +   G     LSGG++Q +AI RA++  PK+L++DE +  L       V  
Sbjct: 125 LFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180

Query: 556 ALEKIMS-NRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLIS 601
            ++KI     T ++V         V     VL+ GQ+V  G   +L+ 
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  133 bits (336), Expect = 1e-35
 Identities = 68/221 (30%), Positives = 110/221 (49%), Gaps = 14/221 (6%)

Query: 1026 NLNLKVSAGRS-LAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084
             LN+    GR    ++G +G+GKS  + L+     P  G V ++G DI    L   RR I
Sbjct: 15   RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72

Query: 1085 GLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 1143
            G V Q+ ALF   ++Y NI YG  +   +E  +  +             G    +  +  
Sbjct: 73   GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPA 125

Query: 1144 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL--MEGRTTIMVAH 1201
            +LSGG++QRVA+ARA++  P +LLLDE  SA+D  ++ ++ E L  +        + V H
Sbjct: 126  RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185

Query: 1202 RLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241
             L      AD++AV+  G++ E G  ++L   +NG   + +
Sbjct: 186  DLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  129 bits (326), Expect = 3e-34
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 14/218 (6%)

Query: 396 NLNFSVDAGK-TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
            LN   + G+     +GP+G+GKS  + ++  + +P  G++ L+G D+    L   R  +
Sbjct: 15  RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72

Query: 455 GLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
           G V Q+ ALF   S+  NI  G  +          +       +  L D           
Sbjct: 73  GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-------PA 125

Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI--MSNRTTIVVAH 571
           +LSGG++QR+A+ARA++  P++LLLDE  SA+D +++ ++   L  +    +   + V H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185

Query: 572 RLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAA 608
            L     + D + V+ NG++VE G   +L S      A
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  131 bits (330), Expect = 8e-35
 Identities = 67/244 (27%), Positives = 119/244 (48%), Gaps = 14/244 (5%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            I ++NVS  +  +  +   +N+N+ +  G    ++G SG+GK+T + ++     P +G +
Sbjct: 4    IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62

Query: 1066 LIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAA 1121
              D   + +     +    RKIG+V Q  AL+   T +ENI +   +    +     +  
Sbjct: 63   YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122

Query: 1122 NAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1181
                 +          +     +LSG Q+QRVA+ARA++K+PS+LLLDE  S LD    +
Sbjct: 123  EVAKIL-----DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177

Query: 1182 LIQEALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIY- 1237
              +  + ++    G T ++V+H  + I   AD++ VL +GK+ ++G  E L      I  
Sbjct: 178  SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237

Query: 1238 KQLI 1241
              LI
Sbjct: 238  ASLI 241

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  127 bits (319), Expect = 2e-33
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
           +I    V   +     +  +N+N +++ G+ F  +GPSG+GK+T + ++  L  P++G++
Sbjct: 3   RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62

Query: 436 LLDGHDLKSLQLKWLRE---QMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAA 491
             D   + S     +     ++G+V Q  AL+   +   NI     +  M +     +  
Sbjct: 63  YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122

Query: 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
                +  +             +LSG Q+QR+A+ARA++++P +LLLDE  S LDA    
Sbjct: 123 EVAKIL-DIHHVLNHFPR----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177

Query: 552 IVQRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
             +  ++++      T +VV+H  + +  + D + VL  G++V+ G   DL   
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score =  129 bits (324), Expect = 4e-34
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 18/231 (7%)

Query: 1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 1065
            IE+ ++S K+         +NL+LKV +G    ++G +G+GK+  + L+  F+ P SG +
Sbjct: 2    IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

Query: 1066 LIDGYDIRTLNLRSLRRKIGLVQQEPALF-STTIYENIKYGNEDASEIELMKATKAANAH 1124
            L+DG D+   +L   +  I  V Q  +LF    + +N+++G       +  +    A   
Sbjct: 58   LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115

Query: 1125 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1184
                      +  +    + LSGG++QRVA+ARA++ NP ILLLDE  SALD  ++   +
Sbjct: 116  KI--------EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167

Query: 1185 EALDKL--MEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232
            E L  L      T + + H  +  R  AD+IAV+  GK+ ++G  E++  K
Sbjct: 168  EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score =  122 bits (308), Expect = 5e-32
 Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 25/234 (10%)

Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
           IE   +   + +      +NL+  V++G+ F  +GP+G+GK+  + ++   + P SG+IL
Sbjct: 2   IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58

Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALF-----ATSIANNILLGKEDASMDRVIEAAKAA 491
           LDG D+  L     +  +  V Q  +LF       ++   + + K      RV++ A+  
Sbjct: 59  LDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDL 115

Query: 492 NAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL 551
                ++  P             LSGG++QR+A+ARA++ NPKILLLDE  SALD  ++ 
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164

Query: 552 IVQRALEKI--MSNRTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
             +  L  +   +  T + + H  +  R + D I V+ +G++++ G   ++  K
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score =  102 bits (255), Expect = 1e-25
 Identities = 19/198 (9%), Positives = 47/198 (23%), Gaps = 31/198 (15%)

Query: 1037 LAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFST 1096
            + + G+ G GK+T++  ++      +     +         R+  R I    ++    S 
Sbjct: 3    IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62

Query: 1097 TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIA 1156
                    G+                               V  +  +         A  
Sbjct: 63   FFTSKKLVGSY-----------------------------GVNVQYFEELAIPILERAYR 93

Query: 1157 RAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQ 1216
             A      ++++DE       + +                +             +I  L 
Sbjct: 94   EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153

Query: 1217 QGKVAEIGSH--EQLLRK 1232
               + E+     + +L  
Sbjct: 154  GAVLIELTPENRDVILED 171

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 98.5 bits (244), Expect = 3e-24
 Identities = 18/189 (9%), Positives = 41/189 (21%), Gaps = 29/189 (15%)

Query: 408 AFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATS 467
              G  G GK+T++  +       +     +       + +     +    ++    +  
Sbjct: 4   IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63

Query: 468 IANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527
             +  L+G                                V     +         A   
Sbjct: 64  FTSKKLVG-----------------------------SYGVNVQYFEELAIPILERAYRE 94

Query: 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587
           A     K++++DE         +            N   +           V  I  L  
Sbjct: 95  AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154

Query: 588 GQVVESGTH 596
             ++E    
Sbjct: 155 AVLIELTPE 163

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 7e-08
 Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 5/148 (3%)

Query: 410 VGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIA 469
            GP G GK+T+I     + + +   +     +      + +   +  +S      +    
Sbjct: 7   TGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGL 66

Query: 470 NNILLGKEDASMDRVIEAAKAANAHSFV-----EGLPDGYQTQVGEGGTQLSGGQKQRIA 524
                 +E      V++          V          G +  V +   ++    +  I 
Sbjct: 67  EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126

Query: 525 IARAVLRNPKILLLDEATSALDAESELI 552
             R  L  P  ++L            L+
Sbjct: 127 AVRQTLSTPGTIILGTIPVPKGKPLALV 154

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 5/153 (3%)

Query: 1035 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 1094
            R + + G  G GK+T+I             V     +      R +   +  +       
Sbjct: 2    RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61

Query: 1095 STTIYENIKYGNEDASEIELMKATKAANAHGFISRM-----PEGYQSHVGDRGVQLSGGQ 1149
            S    E      E      ++  T        + R        G +  V D   ++    
Sbjct: 62   SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121

Query: 1150 KQRVAIARAILKNPSILLLDEATSALDTASENL 1182
            +  +   R  L  P  ++L             +
Sbjct: 122  QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALV 154

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 45.3 bits (105), Expect = 3e-05
 Identities = 38/314 (12%), Positives = 95/314 (30%), Gaps = 2/314 (0%)

Query: 672 LLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFV 731
            L+             +  I+      L  L I + +    + H       V  + +   
Sbjct: 5   YLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIG 64

Query: 732 GLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDL--DENNTGLLISTL 789
               + + V     +    + +  + ++   +   + ++           N  G +IS +
Sbjct: 65  IALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRV 124

Query: 790 AADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQLF 849
             D    +  +   L  I  +    + A  I F L  +L        P  I         
Sbjct: 125 INDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGR 184

Query: 850 LKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHIS 909
           L+    + ++A +       E +  I  V ++ IE   +  F  + +    +AL     +
Sbjct: 185 LRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244

Query: 910 GFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDI 969
            + +     ++     + +   + L        G +      L +    +   +A    +
Sbjct: 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTL 304

Query: 970 VKGSQALGPVFGIL 983
            +   ++  VF ++
Sbjct: 305 TQSFASMDRVFQLI 318

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 45.3 bits (105), Expect = 3e-05
 Identities = 51/318 (16%), Positives = 116/318 (36%), Gaps = 5/318 (1%)

Query: 669 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVAL 728
              L    A      ++  +  IL           +  +L   +   D  +   +  + L
Sbjct: 4   FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPL 60

Query: 729 IFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLIST 788
           + +GL ++      +  Y  + +   +   +R  +F  ++   + +FD     T   +S 
Sbjct: 61  VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTL--LSR 118

Query: 789 LAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRLAAVVAASLPLLIGAFVAEQL 848
           +  D+  V S+ +  L  +V+  A  +  F++ F  SW+L+ ++    P++  A      
Sbjct: 119 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 178

Query: 849 FLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHI 908
             +    +      + T+ A + +   + V  +G ++  + +F    ++   Q +     
Sbjct: 179 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238

Query: 909 SGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPD 968
           S     + QL++  + A  L+ AS          G I   F  +I     +     +   
Sbjct: 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 298

Query: 969 IVKGSQALGPVFGILYRK 986
             +G  A   +F IL  +
Sbjct: 299 FQRGMAACQTLFAILDSE 316

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 1146 SGGQKQRVAI----ARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT-TIMVA 1200
            SGG+K   A+    A    +     +LDE  +ALD  +   I   + +        I+++
Sbjct: 334  SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393

Query: 1201 HRLSTIRNADKI 1212
             + +    +D +
Sbjct: 394  LKNTMFEKSDAL 405

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1253
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	99.98
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	99.97
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	99.95
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	99.94
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.72
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.65
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.49
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.31
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.2
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.12
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.09
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.99
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.89
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.76
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.69
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.61
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.04
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.57
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.48
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.27
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.15
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.14
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.09
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.03
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.01
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.93
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.88
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.8
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.8
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.76
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.75
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.72
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.71
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.7
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.69
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.53
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.39
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.29
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.0
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.9
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.87
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.85
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.74
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.7
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.7
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.67
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.66
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.58
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.57
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.56
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.42
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.41
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.37
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.36
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.33
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.31
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.26
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	94.23
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.21
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	94.16
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	94.1
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.09
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.03
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.03
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.0
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	93.91
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.9
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.88
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.73
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.7
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.69
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.68
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.59
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	93.5
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.44
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.41
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	93.38
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.34
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.24
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	93.2
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.19
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.17
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.16
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	93.12
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.09
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.08
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	93.0
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	92.98
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	92.96
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.9
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	92.75
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.65
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	92.63
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	92.61
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	92.59
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	92.49
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	92.45
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.43
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.41
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.29
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	92.19
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	92.17
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	92.15
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.05
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.04
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	92.01
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	92.0
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	91.82
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	91.8
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.8
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	91.76
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.76
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	91.74
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.56
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	91.56
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.5
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	91.36
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	91.35
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	91.34
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	91.24
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.16
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	91.09
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	91.06
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.06
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	91.04
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	91.01
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.99
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	90.96
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	90.96
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	90.93
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	90.8
d1vmaa2	213	GTPase domain of the signal recognition particle r	90.71
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	90.68
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	90.66
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	90.6
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	90.59
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.58
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	90.58
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	90.58
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.57
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	90.55
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	90.52
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	90.52
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.45
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	90.42
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	90.42
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.4
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	90.38
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	90.36
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	90.32
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	90.3
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	90.23
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	90.17
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	90.17
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	90.14
d1nrjb_	209	Signal recognition particle receptor beta-subunit	90.13
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	90.09
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	90.03
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	90.03
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	90.03
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	90.01
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	90.0
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	89.96
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	89.92
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	89.81
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	89.7
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	89.67
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	89.66
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	89.66
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	89.59
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	89.59
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	89.58
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	89.58
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.58
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	89.57
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	89.57
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	89.55
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	89.54
d1okkd2	207	GTPase domain of the signal recognition particle r	89.46
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	89.46
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	89.29
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	89.18
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	89.14
d1okkd2	207	GTPase domain of the signal recognition particle r	89.08
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	89.07
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.02
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	88.92
d2fh5b1	207	Signal recognition particle receptor beta-subunit	88.9
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	88.8
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	88.76
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	88.72
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	88.66
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	88.66
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	88.63
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	88.55
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	88.42
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	88.2
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	88.18
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	88.11
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	88.01
d1xpua3	289	Transcription termination factor Rho, ATPase domai	88.0
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	87.93
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	87.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	87.85
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	87.84
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	87.82
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	87.8
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	87.78
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	87.75
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	87.74
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	87.72
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	87.67
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	87.63
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	87.63
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	87.61
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	87.51
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	87.5
d2fh5b1	207	Signal recognition particle receptor beta-subunit	87.48
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	87.47
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	87.44
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	87.33
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	87.29
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	87.29
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	87.29
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	87.19
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	87.15
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	87.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	86.86
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	86.77
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	86.67
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	86.56
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	86.56
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	86.54
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	86.54
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	86.52
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	86.51
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	86.38
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	86.29
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	86.2
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	86.2
d2qy9a2	211	GTPase domain of the signal recognition particle r	86.17
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	86.17
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	86.14
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	86.08
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	86.08
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	86.06
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	86.03
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	86.01
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	86.01
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	86.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	85.93
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	85.91
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	85.82
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	85.74
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	85.74
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	85.72
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	85.7
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	85.68
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	85.67
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	85.67
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	85.66
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	85.64
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	85.64
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	85.6
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	85.56
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.48
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	85.46
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	85.41
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	85.37
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.19
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	85.12
d2qy9a2	211	GTPase domain of the signal recognition particle r	85.1
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	85.06
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	85.03
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	85.02
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	84.98
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	84.71
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	84.69
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	84.64
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	84.61
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	84.54
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	84.54
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	84.53
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	84.51
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	84.5
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	84.47
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	84.25
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	84.17
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	84.12
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.11
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	84.07
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	84.06
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	83.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	83.96
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	83.94
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	83.92
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	83.86
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	83.68
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	83.67
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	83.48
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	83.48
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	83.44
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	83.43
d1vmaa2	213	GTPase domain of the signal recognition particle r	83.38
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	83.38
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	83.29
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	83.28
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	83.19
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	83.11
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	82.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	82.73
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	82.6
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	82.55
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	82.5
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	82.49
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	82.48
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	82.41
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	82.37
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	82.33
d1xpua3	289	Transcription termination factor Rho, ATPase domai	82.29
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	82.27
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	82.2
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	82.13
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	82.11
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	82.03
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	82.03
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	82.0
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	81.87
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	81.85
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	81.74
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	81.74
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	81.63
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	81.57
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	81.5
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	81.45
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	81.36
d1j8yf2	211	GTPase domain of the signal sequence recognition p	80.97
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	80.9
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	80.9
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	80.88
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	80.76
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	80.71
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	80.69
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	80.68
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	80.63
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	80.39
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	80.21
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	80.21
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	80.19
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	80.14
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	80.12
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	80.09
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	80.07
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	80.05

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=0  Score=521.93  Aligned_cols=245  Identities=51%  Similarity=0.832  Sum_probs=235.0

Q ss_pred             CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
Q ss_conf             55666749999688987999896541120387748968999849999688999998423789841899999517999978
Q 000851          999 VTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLR 1078 (1253)
Q Consensus       999 ~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~ 1078 (1253)
                      .....|.|+|+||+|+|+++ ..++|+||||+|++||++||+|+||||||||+++|+|+|+|++|+|.+||.|+++++..
T Consensus        10 l~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~   88 (255)
T d2hyda1          10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG   88 (255)
T ss_dssp             CCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred             CCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf             77778879999889995999-97606443899839989999889998099999999712786300015399875307888


Q ss_pred             HHHCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             77233288806787652138888502998879999999999900989997287876542259999889249999999998
Q 000851         1079 SLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1079 ~lR~~i~~v~Qd~~LF~gTIreNL~~g~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARA 1158 (1253)
                      .+|++++||||++.+|++||+|||.++.++.+++++++|++.+++++++.++|+||||.++++|.+||||||||+|||||
T Consensus        89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa  168 (255)
T d2hyda1          89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI  168 (255)
T ss_dssp             HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred             HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             86341456510156899879999851586799999999999969799997362420103338889849999999999999


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf             60599878972666899969899999999987289649998159115550488999959789882595689500162389
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1238 (1253)
Q Consensus      1159 Llr~p~ILILDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aD~I~vl~~G~ive~G~~~eLl~~~~g~y~ 1238 (1253)
                      ++++|+|||||||||+||+.|++.|++.|+++.+++|+|+||||++.+..||+|++|++|++++.|+|+||++ .++.|+
T Consensus       169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~-~~~~y~  247 (255)
T d2hyda1         169 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYE  247 (255)
T ss_dssp             HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH-TTSHHH
T ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHHH
T ss_conf             8559989998376544797799999999998753888999968999998599999998999999889999986-884999


Q ss_pred             HHHHHHH
Q ss_conf             9999962
Q 000851         1239 QLIRLQQ 1245 (1253)
Q Consensus      1239 ~l~~~~~ 1245 (1253)
                      +||+.|.
T Consensus       248 ~l~~~Q~  254 (255)
T d2hyda1         248 HLYSIQN  254 (255)
T ss_dssp             HHHTTTT
T ss_pred             HHHHHCC
T ss_conf             9999747

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=516.64  Aligned_cols=241  Identities=46%  Similarity=0.779  Sum_probs=232.5

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf             49999688987999896541120387748968999849999688999998423789841899999517999978772332
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+|+||+|+|+.. .+++|+||||+|++||++||+|+||||||||+++|+|+|+|++|+|++||.|+++++.+++|+++
T Consensus         1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i   79 (241)
T d2pmka1           1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV   79 (241)
T ss_dssp             EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf             92999999990899-96037424899849999999999999899999999735788888999999994400246553528


Q ss_pred             EEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             88806787652138888502998879999999999900989997287876542259999889249999999998605998
Q 000851         1085 GLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 1164 (1253)
Q Consensus      1085 ~~v~Qd~~LF~gTIreNL~~g~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1164 (1253)
                      +||||+|.+|++||+|||.++.+..++++++++++.+++.+++..+|+|++|.++++|.+||||||||+|||||++++|+
T Consensus        80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~  159 (241)
T d2pmka1          80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  159 (241)
T ss_dssp             EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             89824465578400035223575543888999999975578887632013443278788669889898754434441651


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
Q ss_conf             78972666899969899999999987289649998159115550488999959789882595689500162389999996
Q 000851         1165 ILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244 (1253)
Q Consensus      1165 ILILDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aD~I~vl~~G~ive~G~~~eLl~~~~g~y~~l~~~~ 1244 (1253)
                      |+|||||||+||+.+++.|++.|+++.+++|+|+||||++.++.||+|+||++|+|+|+|+|+||+++.++.|++||+.|
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q  239 (241)
T d2pmka1         160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ  239 (241)
T ss_dssp             EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf             35564776555989999999999998589989999788999984999999989999998899999829987899999981


Q ss_pred             HC
Q ss_conf             21
Q 000851         1245 QD 1246 (1253)
Q Consensus      1245 ~~ 1246 (1253)
                      .+
T Consensus       240 ~d  241 (241)
T d2pmka1         240 SD  241 (241)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             39

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=510.28  Aligned_cols=245  Identities=49%  Similarity=0.802  Sum_probs=233.7

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf             56667499996889879998965411203877489689998499996889999984237898418999995179999787
Q 000851         1000 TEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS 1079 (1253)
Q Consensus      1000 ~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~ 1079 (1253)
                      ++..|.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++...
T Consensus         8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~   86 (253)
T d3b60a1           8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS   86 (253)
T ss_dssp             SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred             CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf             7783079999889992999-976353328998599999999999985999999986216888468987880121110665


Q ss_pred             HHCCEEEECCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             723328880678765213888850299-8879999999999900989997287876542259999889249999999998
Q 000851         1080 LRRKIGLVQQEPALFSTTIYENIKYGN-EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1080 lR~~i~~v~Qd~~LF~gTIreNL~~g~-~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARA 1158 (1253)
                      +|++++||||+|.+|++|+++|+.++. ...+++++++|++.++++++++.+|+||+|.+++.|.+||||||||+|||||
T Consensus        87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa  166 (253)
T d3b60a1          87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA  166 (253)
T ss_dssp             HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred             HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             42068799502544786202433205722089999999999981799997355441014348889849999999999999


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf             60599878972666899969899999999987289649998159115550488999959789882595689500162389
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1238 (1253)
Q Consensus      1159 Llr~p~ILILDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aD~I~vl~~G~ive~G~~~eLl~~~~g~y~ 1238 (1253)
                      |+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++.+..||+|+||++|+|+|+|+|+||++ +++.|+
T Consensus       167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~-~~~~y~  245 (253)
T d3b60a1         167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYA  245 (253)
T ss_dssp             HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH-HTSSHH
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHHH
T ss_conf             9549988995164445898899999999987522788999988799998599999998999999889999986-893999


Q ss_pred             HHHHHHHC
Q ss_conf             99999621
Q 000851         1239 QLIRLQQD 1246 (1253)
Q Consensus      1239 ~l~~~~~~ 1246 (1253)
                      +||+.|.+
T Consensus       246 ~l~~~Q~g  253 (253)
T d3b60a1         246 QLHKMQFG  253 (253)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHCCC
T ss_conf             99997259

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=502.24  Aligned_cols=241  Identities=39%  Similarity=0.714  Sum_probs=229.1

Q ss_pred             CCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf             66674999968898799989654112038774896899984999968899999842378984189999951799997877
Q 000851         1001 EIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 1080 (1253)
Q Consensus      1001 ~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~l 1080 (1253)
                      ..+|.|+|+||+|+||++++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||.|+++++...+
T Consensus         7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~   86 (251)
T d1jj7a_           7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL   86 (251)
T ss_dssp             CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred             CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf             65336999998998899999976744389984998999999999849999999861437876899889985311013788


Q ss_pred             HCCEEEECCCCCCCCCCHHHHHCCC-CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             2332888067876521388885029-988799999999999009899972878765422599998892499999999986
Q 000851         1081 RRKIGLVQQEPALFSTTIYENIKYG-NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 1159 (1253)
Q Consensus      1081 R~~i~~v~Qd~~LF~gTIreNL~~g-~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL 1159 (1253)
                      |++++||||+|.+|++||+||+.++ .+..+++++.++++.+++.++++.+|+|+++.+++.|.+||||||||+|||||+
T Consensus        87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal  166 (251)
T d1jj7a_          87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL  166 (251)
T ss_dssp             HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf             87765404565002763465545421013027889999999989999985612111367516766895470489986044


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf             059987897266689996989999999998728--964999815911555048899995978988259568950016238
Q 000851         1160 LKNPSILLLDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1237 (1253)
Q Consensus      1160 lr~p~ILILDEpTSaLD~~te~~I~~~l~~~~~--~~TvI~IsHrl~~i~~aD~I~vl~~G~ive~G~~~eLl~~~~g~y 1237 (1253)
                      +++|+|+|||||||+||+.++..|++.|++..+  ++|+|+||||++.++.||+|+||++|+|+++|+|+||++ .++.|
T Consensus       167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~-~~~~y  245 (251)
T d1jj7a_         167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGCY  245 (251)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HTSHH
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCCHH
T ss_conf             56870787167576568536899999999976506989999959799998599999998999999889999985-97588


Q ss_pred             HHHHH
Q ss_conf             99999
Q 000851         1238 KQLIR 1242 (1253)
Q Consensus      1238 ~~l~~ 1242 (1253)
                      ++||+
T Consensus       246 ~~l~~  250 (251)
T d1jj7a_         246 WAMVQ  250 (251)
T ss_dssp             HHHHC
T ss_pred             HHHHC
T ss_conf             99962

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=0  Score=502.93  Aligned_cols=238  Identities=42%  Similarity=0.742  Sum_probs=228.3

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf             99996889879998965411203877489689998499996889999984237898418999995179999787723328
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++||+|+|++  .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+++++.+.+|++|+
T Consensus         2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   79 (242)
T d1mv5a_           2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (242)
T ss_dssp             EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf             799988998799--984142258998599999999999997999999999960989877988998844246788874367


Q ss_pred             EECCCCCCCCCCHHHHHCCC-CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             88067876521388885029-98879999999999900989997287876542259999889249999999998605998
Q 000851         1086 LVQQEPALFSTTIYENIKYG-NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 1164 (1253)
Q Consensus      1086 ~v~Qd~~LF~gTIreNL~~g-~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1164 (1253)
                      ||||+|.+|++||+||+.++ .+..++++++++++.+++.+++..+|++++|.++++|.+||||||||+||||||+++|+
T Consensus        80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~  159 (242)
T d1mv5a_          80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (242)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             97566545785345430124455542356778999997555420374210152368789879999999999999852998


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
Q ss_conf             78972666899969899999999987289649998159115550488999959789882595689500162389999996
Q 000851         1165 ILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1244 (1253)
Q Consensus      1165 ILILDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aD~I~vl~~G~ive~G~~~eLl~~~~g~y~~l~~~~ 1244 (1253)
                      |||||||||+||+.+++.|++.|+++.+++|+|+||||++.+..||+|+||++|+|+++|+|+||++ .++.|+++++.|
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~-~~~~y~~l~~~Q  238 (242)
T d1mv5a_         160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSEQ  238 (242)
T ss_dssp             EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH-HCHHHHHHHHCC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHH-CCHHHHHHHHHH
T ss_conf             9996588655698899999887888717998999978799998499999998999999999999986-896999999998


Q ss_pred             HC
Q ss_conf             21
Q 000851         1245 QD 1246 (1253)
Q Consensus      1245 ~~ 1246 (1253)
                      ..
T Consensus       239 ~~  240 (242)
T d1mv5a_         239 LT  240 (242)
T ss_dssp             CC
T ss_pred             HH
T ss_conf             50

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=0  Score=478.55  Aligned_cols=243  Identities=51%  Similarity=0.843  Sum_probs=234.4

Q ss_pred             CCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf             98775899878998899999641120288838999999858999389999999715889975899999617998888874
Q 000851          372 KLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR  451 (1253)
Q Consensus       372 ~~~~~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~  451 (1253)
                      ...|.|+++||+|+|++...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.|+++++..++|
T Consensus        12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr   91 (255)
T d2hyda1          12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR   91 (255)
T ss_dssp             CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred             CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf             77887999988999599997606443899839989999889998099999999712786300015399875307888863


Q ss_pred             CCCEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             00378804676681238999733999999999999999817188886199875441258998789689999999998424
Q 000851          452 EQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       452 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~  531 (1253)
                      ++++||+|+|++|++||+|||++|.++.++++++++++.+++++++..+|+|++|.++++|.+||||||||++||||+++
T Consensus        92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~  171 (255)
T d2hyda1          92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  171 (255)
T ss_dssp             HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             41456510156899879999851586799999999999969799997362420103338889849999999999999855


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHHHCCCHHHHHHH
Q ss_conf             99888983768888999899999999987089739998149235440498999969789884072022211943799999
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN  611 (1253)
Q Consensus       532 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~  611 (1253)
                      +|+++|||||||+||+.++..+.+.+..+.+++|+|+||||++.+..||+|++|++|++++.|+|+||+++++.|+++|.
T Consensus       172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~  251 (255)
T d2hyda1         172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS  251 (255)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
T ss_conf             99899983765447977999999999987538889999689999985999999989999998899999868849999999


Q ss_pred             HHH
Q ss_conf             530
Q 000851          612 LQS  614 (1253)
Q Consensus       612 ~~~  614 (1253)
                      .|.
T Consensus       252 ~Q~  254 (255)
T d2hyda1         252 IQN  254 (255)
T ss_dssp             TTT
T ss_pred             HCC
T ss_conf             747

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=470.89  Aligned_cols=239  Identities=49%  Similarity=0.804  Sum_probs=230.4

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf             58998789988999996411202888389999998589993899999997158899758999996179988888740037
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~  455 (1253)
                      +|+|+||+|+|+....++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||+|+.+++..++|++++
T Consensus         1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   80 (241)
T d2pmka1           1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG   80 (241)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf             92999999990899960374248998499999999999998999999997357888889999999944002465535288


Q ss_pred             EEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             88046766812389997339999999999999998171888861998754412589987896899999999984249988
Q 000851          456 LVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI  535 (1253)
Q Consensus       456 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~~~~i  535 (1253)
                      ||+|+|++|++||+|||.++.++.+.++++.+++.+++.+++..+|+|++|.++++|.+||||||||++||||++++|+|
T Consensus        81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i  160 (241)
T d2pmka1          81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI  160 (241)
T ss_dssp             EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf             98244655784000352235755438889999999755788876320134432787886698898987544344416513


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHHHC-CCHHHHHHHHHH
Q ss_conf             8983768888999899999999987089739998149235440498999969789884072022211-943799999530
Q 000851          536 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK-GGEYAALVNLQS  614 (1253)
Q Consensus       536 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~  614 (1253)
                      +|||||||+||+.++..+.+.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|++++++ ++.|+++|+.|.
T Consensus       161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q~  240 (241)
T d2pmka1         161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS  240 (241)
T ss_dssp             EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHHC
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHC
T ss_conf             55647765559899999999999985899899997889999849999999899999988999998299878999999813

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=470.10  Aligned_cols=245  Identities=49%  Similarity=0.774  Sum_probs=234.1

Q ss_pred             CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf             89987758998789988999996411202888389999998589993899999997158899758999996179988888
Q 000851          370 LPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW  449 (1253)
Q Consensus       370 ~~~~~~~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~  449 (1253)
                      .+...|.|+|+||+|+|++...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.|+.+++..+
T Consensus         7 ~~~~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~   86 (253)
T d3b60a1           7 IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS   86 (253)
T ss_dssp             CSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred             CCCCCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf             67783079999889992999976353328998599999999999985999999986216888468987880121110665


Q ss_pred             HHCCCEEEECCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             7400378804676681238999733999-999999999999817188886199875441258998789689999999998
Q 000851          450 LREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       450 ~~~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARa  528 (1253)
                      +|++++||+|+|++|++|+++|+.++.+ ..++++++++++.++++++++.+|+|++|.++++|.+|||||||||+||||
T Consensus        87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa  166 (253)
T d3b60a1          87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA  166 (253)
T ss_dssp             HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred             HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             42068799502544786202433205722089999999999981799997355441014348889849999999999999


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHHHCCCHHHH
Q ss_conf             42499888983768888999899999999987089739998149235440498999969789884072022211943799
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA  608 (1253)
Q Consensus       529 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~  608 (1253)
                      ++++|+++|||||||+||+.++..+.+.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++++.|++
T Consensus       167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~  246 (253)
T d3b60a1         167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQ  246 (253)
T ss_dssp             HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHH
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf             95499889951644458988999999999875227889999887999985999999989999998899999868939999


Q ss_pred             HHHHHH
Q ss_conf             999530
Q 000851          609 LVNLQS  614 (1253)
Q Consensus       609 ~~~~~~  614 (1253)
                      +|+.|.
T Consensus       247 l~~~Q~  252 (253)
T d3b60a1         247 LHKMQF  252 (253)
T ss_dssp             HHHHTC
T ss_pred             HHHHCC
T ss_conf             999725

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=456.61  Aligned_cols=240  Identities=45%  Similarity=0.795  Sum_probs=226.5

Q ss_pred             CCCCCEEEEEEEEECCCCCC-CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf             98775899878998899999-64112028883899999985899938999999971588997589999961799888887
Q 000851          372 KLAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL  450 (1253)
Q Consensus       372 ~~~~~i~~~~v~f~y~~~~~-~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~  450 (1253)
                      ...|.|+|+||+|+|++.++ .+|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+|+.+++..++
T Consensus         7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~   86 (251)
T d1jj7a_           7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL   86 (251)
T ss_dssp             CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred             CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf             65336999998998899999976744389984998999999999849999999861437876899889985311013788


Q ss_pred             HCCCEEEECCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             400378804676681238999733999-9999999999998171888861998754412589987896899999999984
Q 000851          451 REQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       451 ~~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal  529 (1253)
                      |++++||+|+|++|++|++||+.+|.. ....+++..+++.+++.++++.+|+|++|.++++|.+||||||||++||||+
T Consensus        87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal  166 (251)
T d1jj7a_          87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL  166 (251)
T ss_dssp             HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf             87765404565002763465545421013027889999999989999985612111367516766895470489986044


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHHHCCCHHH
Q ss_conf             249988898376888899989999999998708--973999814923544049899996978988407202221194379
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA  607 (1253)
Q Consensus       530 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~  607 (1253)
                      +++|+|+|||||||+||+.++..+++.+.++.+  ++|+|+||||++.+..||+|++|++|+|+++|+|+||+++++.|+
T Consensus       167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~  246 (251)
T d1jj7a_         167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW  246 (251)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf             56870787167576568536899999999976506989999959799998599999998999999889999985975889


Q ss_pred             HHHH
Q ss_conf             9999
Q 000851          608 ALVN  611 (1253)
Q Consensus       608 ~~~~  611 (1253)
                      +|++
T Consensus       247 ~l~~  250 (251)
T d1jj7a_         247 AMVQ  250 (251)
T ss_dssp             HHHC
T ss_pred             HHHC
T ss_conf             9962

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=0  Score=459.19  Aligned_cols=237  Identities=46%  Similarity=0.744  Sum_probs=226.6

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf             89987899889999964112028883899999985899938999999971588997589999961799888887400378
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~  456 (1253)
                      |+++||+|+|++. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.|+.+++...+|++|+|
T Consensus         2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   80 (242)
T d1mv5a_           2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (242)
T ss_dssp             EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf             7999889987999-841422589985999999999999979999999999609898779889988442467888743679


Q ss_pred             EECCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             804676681238999733999-9999999999998171888861998754412589987896899999999984249988
Q 000851          457 VSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKI  535 (1253)
Q Consensus       457 v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~~~~i  535 (1253)
                      |+|+|++|++|++||+.++.. ..++++++++++.+.+.+++..+|++++|.++++|.+|||||||||+||||++++|+|
T Consensus        81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i  160 (242)
T d1mv5a_          81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI  160 (242)
T ss_dssp             ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             75665457853454301244555423567789999975554203742101523687898799999999999998529989


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHHHCCCHHHHHHHHHH
Q ss_conf             8983768888999899999999987089739998149235440498999969789884072022211943799999530
Q 000851          536 LLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS  614 (1253)
Q Consensus       536 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~  614 (1253)
                      +|||||||+||+.++..+++.++++.+++|+|+||||++.+..||+|++|++|++++.|+|+||++.++.|++++..|.
T Consensus       161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q~  239 (242)
T d1mv5a_         161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQL  239 (242)
T ss_dssp             EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCCC
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHHH
T ss_conf             9965886556988999998878887179989999787999984999999989999999999999868969999999985

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=419.60  Aligned_cols=220  Identities=29%  Similarity=0.475  Sum_probs=200.2

Q ss_pred             CCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC
Q ss_conf             67499996889879998965411203877489689998499996889999984237898418999995179999787723
Q 000851         1003 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 1082 (1253)
Q Consensus      1003 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~ 1082 (1253)
                      ...|+|+|++|.+     .|+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||             
T Consensus        36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------   97 (281)
T d1r0wa_          36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------   97 (281)
T ss_dssp             ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred             CCCEEEEECCCCC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf             8967999769899-----7677375999859999999989998299999999579747882899999-------------


Q ss_pred             CEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             32888067876521388885029988799999999999009899972878765422599998892499999999986059
Q 000851         1083 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 1162 (1253)
Q Consensus      1083 ~i~~v~Qd~~LF~gTIreNL~~g~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1162 (1253)
                      +++|+||++.+|++||+||+.++. ..++.+.+++++.+.+.+++..+|+++++.+++.|.+||||||||++|||||+++
T Consensus        98 ~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~  176 (281)
T d1r0wa_          98 RVSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD  176 (281)
T ss_dssp             CEEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             999981643026760321420333-4560579999999776999984612332355554237799999999999999869


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf             9878972666899969899999999-987289649998159115550488999959789882595689500162389999
Q 000851         1163 PSILLLDEATSALDTASENLIQEAL-DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1163 p~ILILDEpTSaLD~~te~~I~~~l-~~~~~~~TvI~IsHrl~~i~~aD~I~vl~~G~ive~G~~~eLl~~~~g~y~~l~ 1241 (1253)
                      |+|||||||||+||+.++..+++.+ ....+++|+|+||||++.++.||||++|++|+++++|+|+||++ .++.|++.+
T Consensus       177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~-~~~~~~~~~  255 (281)
T d1r0wa_         177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS-LRPDFSSKL  255 (281)
T ss_dssp             CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HCHHHHHHH
T ss_pred             CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHC-CCCHHHHHH
T ss_conf             6351333855448989999999999988628999999925289998599999998999999878999960-594899987


Q ss_pred             H
Q ss_conf             9
Q 000851         1242 R 1242 (1253)
Q Consensus      1242 ~ 1242 (1253)
                      .
T Consensus       256 ~  256 (281)
T d1r0wa_         256 M  256 (281)
T ss_dssp             H
T ss_pred             C
T ss_conf             2

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=391.48  Aligned_cols=219  Identities=29%  Similarity=0.497  Sum_probs=199.3

Q ss_pred             CCEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf             75899878998899999641120288838999999858999389999999715889975899999617998888874003
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i  454 (1253)
                      ..|.|+|++|.+    .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|             ++
T Consensus        37 ~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i   99 (281)
T d1r0wa_          37 NNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV   99 (281)
T ss_dssp             ---CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred             CCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------EE
T ss_conf             967999769899----7677375999859999999989998299999999579747882899999-------------99


Q ss_pred             EEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             78804676681238999733999999999999999817188886199875441258998789689999999998424998
Q 000851          455 GLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK  534 (1253)
Q Consensus       455 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~~~~  534 (1253)
                      +|++|++++|++||+||+.++.. ....++..+++.+.+.+++..+|+++++.++++|.+||||||||++||||++++|+
T Consensus       100 ~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~  178 (281)
T d1r0wa_         100 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD  178 (281)
T ss_dssp             EEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred             EEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99816430267603214203334-56057999999977699998461233235555423779999999999999986963


Q ss_pred             EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHHHCCCHHHHHHH
Q ss_conf             8898376888899989999999-9987089739998149235440498999969789884072022211943799999
Q 000851          535 ILLLDEATSALDAESELIVQRA-LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN  611 (1253)
Q Consensus       535 ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~  611 (1253)
                      |+|||||||+||+.++..+.+. +..+..++|+|+|||+++.+..||+|++|++|++++.|+|+||+..++.|...+.
T Consensus       179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~  256 (281)
T d1r0wa_         179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM  256 (281)
T ss_dssp             EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred             CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHC
T ss_conf             513338554489899999999999886289999999252899985999999989999998789999605948999872

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-45  Score=383.10  Aligned_cols=217  Identities=31%  Similarity=0.500  Sum_probs=190.9

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf             99996889879998965411203877489689998499996889999984237898418999995179999787723328
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++||+++|.   +..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|++||.++.+.+..  |++|+
T Consensus         1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig   75 (232)
T d2awna2           1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG   75 (232)
T ss_dssp             EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred             CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf             99999999989---99998111778869989999989998299999999658788888899999977888644--43222


Q ss_pred             EECCCCCCCCC-CHHHHHCCCCCC------CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             88067876521-388885029988------79999999999900989997287876542259999889249999999998
Q 000851         1086 LVQQEPALFST-TIYENIKYGNED------ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 1158 (1253)
Q Consensus      1086 ~v~Qd~~LF~g-TIreNL~~g~~~------~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARA 1158 (1253)
                      ||||++.+|+. |++||+.++...      ..++.+.++++.+++.++.++.|           ..||||||||++||||
T Consensus        76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra  144 (232)
T d2awna2          76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT  144 (232)
T ss_dssp             EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHH
T ss_conf             34334202643337889789998759988999999999997578865664896-----------5699999999999999


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf             605998789726668999698999999999872--89649998159115550-488999959789882595689500162
Q 000851         1159 ILKNPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENG 1235 (1253)
Q Consensus      1159 Llr~p~ILILDEpTSaLD~~te~~I~~~l~~~~--~~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G~~~eLl~~~~g 1235 (1253)
                      |+.+|++|+|||||++||+.+...+++.|++..  .|+|+|+|||+++.+.. ||||++|++|++++.|+++|++++...
T Consensus       145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~  224 (232)
T d2awna2         145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD  224 (232)
T ss_dssp             HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf             70399889975888788988998999999999874298799994899999996999999979999998089999738999


Q ss_pred             HHH
Q ss_conf             389
Q 000851         1236 IYK 1238 (1253)
Q Consensus      1236 ~y~ 1238 (1253)
                      .|.
T Consensus       225 ~~v  227 (232)
T d2awna2         225 RFV  227 (232)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             799

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=7e-45  Score=379.73  Aligned_cols=219  Identities=31%  Similarity=0.515  Sum_probs=189.3

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf             49999688987999896541120387748968999849999688999998423789841899999517999978772332
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++|++++|+   +..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|.+||.|+.+.++.  |+++
T Consensus         6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i   80 (239)
T d1v43a3           6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI   80 (239)
T ss_dssp             CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred             EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf             499987999999---99998130678879989999999998299999999758999878799916413547700--0158


Q ss_pred             EEECCCCCCCCC-CHHHHHCCCCC--CCCHHHH----HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             888067876521-38888502998--8799999----9999990098999728787654225999988924999999999
Q 000851         1085 GLVQQEPALFST-TIYENIKYGNE--DASEIEL----MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 1157 (1253)
Q Consensus      1085 ~~v~Qd~~LF~g-TIreNL~~g~~--~~s~~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLAR 1157 (1253)
                      +||||++.+|+. |++||+.++..  ..+.+++    .++++.+++           +.........||||||||++|||
T Consensus        81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGq~QRvaiAr  149 (239)
T d1v43a3          81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-----------EELLNRYPAQLSGGQRQRVAVAR  149 (239)
T ss_dssp             EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-----------GGGTTSCTTTCCSSCHHHHHHHH
T ss_pred             EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHH
T ss_conf             9980033534222099999999987399999999999999987598-----------55660995469999988999976


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf             8605998789726668999698999999999872-8-9649998159115550-48899995978988259568950016
Q 000851         1158 AILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN 1234 (1253)
Q Consensus      1158 ALlr~p~ILILDEpTSaLD~~te~~I~~~l~~~~-~-~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G~~~eLl~~~~ 1234 (1253)
                      ||+.+|+|||||||||+||+.+...+++.++++. + |+|+|+|||+++.+.. ||||++|++|+|++.|+++|+.++..
T Consensus       150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~  229 (239)
T d1v43a3         150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN  229 (239)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred             HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf             64049982430688666898999899999999987319807999489999998699999998999999859999986899


Q ss_pred             CHHHH
Q ss_conf             23899
Q 000851         1235 GIYKQ 1239 (1253)
Q Consensus      1235 g~y~~ 1239 (1253)
                      ..|.+
T Consensus       230 ~~~~~  234 (239)
T d1v43a3         230 SVFVA  234 (239)
T ss_dssp             BHHHH
T ss_pred             CHHHH
T ss_conf             98999

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=4.2e-45  Score=381.97  Aligned_cols=215  Identities=33%  Similarity=0.542  Sum_probs=188.5

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf             99996889879998965411203877489689998499996889999984237898418999995179999787723328
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      |+++||+++|.+    .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+.+.+..  |++++
T Consensus         2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig   75 (229)
T d3d31a2           2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA   75 (229)
T ss_dssp             EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred             EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf             899989999499----788433789879989999989998299999999647688878899956734652165--74056


Q ss_pred             EECCCCCCCCC-CHHHHHCCCC---CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             88067876521-3888850299---8879999999999900989997287876542259999889249999999998605
Q 000851         1086 LVQQEPALFST-TIYENIKYGN---EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK 1161 (1253)
Q Consensus      1086 ~v~Qd~~LF~g-TIreNL~~g~---~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1161 (1253)
                      ||||++.+|+. |++||+.++.   .....+++.++++..++.++.           ......||||||||++|||||+.
T Consensus        76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGG~~QRvaiAraL~~  144 (229)
T d3d31a2          76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVT  144 (229)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTS
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-----------HCCHHHCCHHHHCCHHHHHHHHC
T ss_conf             1512111174665778888877640553899999999982565557-----------58955479998401403043443


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHH
Q ss_conf             998789726668999698999999999872--89649998159115550-48899995978988259568950016238
Q 000851         1162 NPSILLLDEATSALDTASENLIQEALDKLM--EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIY 1237 (1253)
Q Consensus      1162 ~p~ILILDEpTSaLD~~te~~I~~~l~~~~--~~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G~~~eLl~~~~g~y 1237 (1253)
                      +|++||||||||+||+.+...+++.|+++.  .+.|+|+|||+++.+.. ||||++|++|++++.|+|+|++++....|
T Consensus       145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~  223 (229)
T d3d31a2         145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR  223 (229)
T ss_dssp             CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf             6771443478767998999999999999986479689997499999999699999997999999869999986899879

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=4.2e-45  Score=382.19  Aligned_cols=221  Identities=28%  Similarity=0.474  Sum_probs=189.2

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH----H
Q ss_conf             499996889879998965411203877489689998499996889999984237898418999995179999787----7
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS----L 1080 (1253)
Q Consensus      1005 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~----l 1080 (1253)
                      .|+++||+++|.   +..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|.+||.++...+...    .
T Consensus         3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~   79 (240)
T d1g2912           3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK   79 (240)
T ss_dssp             EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred             CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf             189986999989---99998560668869989999999998099999999648788989899999980356644424532


Q ss_pred             HCCEEEECCCCCCCCC-CHHHHHCCCC--CCCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             2332888067876521-3888850299--88799----999999999009899972878765422599998892499999
Q 000851         1081 RRKIGLVQQEPALFST-TIYENIKYGN--EDASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1081 R~~i~~v~Qd~~LF~g-TIreNL~~g~--~~~s~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRl 1153 (1253)
                      |++++||||++.||+. |++||+.++.  ...+.    +.+.+.++.+++.++..           .....||||||||+
T Consensus        80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqkQRv  148 (240)
T d1g2912          80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV  148 (240)
T ss_dssp             GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred             CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHH
T ss_conf             2551200221222310116676330687729998999999999998759966762-----------99334999999999


Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHC-CCEEEEEECCEEEEECCHHHHH
Q ss_conf             99998605998789726668999698999999999872-8-9649998159115550-4889999597898825956895
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1230 (1253)
Q Consensus      1154 aLARALlr~p~ILILDEpTSaLD~~te~~I~~~l~~~~-~-~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G~~~eLl 1230 (1253)
                      +|||||+.+|++|||||||++||+.+...+++.|+++. + |.|+|+|||+++.+.. ||||++|++|++++.|+++|++
T Consensus       149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~  228 (240)
T d1g2912         149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (240)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf             99999826998898258876569899989999999998636988999959999999969999999899999985999998


Q ss_pred             HCCCCHHHH
Q ss_conf             001623899
Q 000851         1231 RKENGIYKQ 1239 (1253)
Q Consensus      1231 ~~~~g~y~~ 1239 (1253)
                      ++....|.+
T Consensus       229 ~~P~~~~~~  237 (240)
T d1g2912         229 DKPANTFVA  237 (240)
T ss_dssp             HSCSBHHHH
T ss_pred             HCCCCHHHH
T ss_conf             289998989

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=4.2e-45  Score=381.16  Aligned_cols=222  Identities=31%  Similarity=0.489  Sum_probs=189.6

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHHHH
Q ss_conf             499996889879998965411203877489689998499996889999984237898418999995179999---78772
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN---LRSLR 1081 (1253)
Q Consensus      1005 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~---~~~lR 1081 (1253)
                      .|+++||+++|+.. +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+   ...+|
T Consensus         3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r   81 (242)
T d1oxxk2           3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (242)
T ss_dssp             CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf             89997579998899-98998040789879989999989998099999999758688874599999995137311153120


Q ss_pred             CCEEEECCCCCCCCC-CHHHHHCCCCC--CCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             332888067876521-38888502998--8799----9999999990098999728787654225999988924999999
Q 000851         1082 RKIGLVQQEPALFST-TIYENIKYGNE--DASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1082 ~~i~~v~Qd~~LF~g-TIreNL~~g~~--~~s~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRla 1154 (1253)
                      ++++||+|++.||+. |++||+.++..  ..+.    +.+.++++.+++.++.           ......||||||||++
T Consensus        82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~p~~LSGGqkQRva  150 (242)
T d1oxxk2          82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-----------NHFPRELSGAQQQRVA  150 (242)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH-----------HCCHHHCCHHHHHHHH
T ss_conf             45147730433466665777766556761379999999999998665917666-----------4895459999985899


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf             9998605998789726668999698999999999872-8-9649998159115550-48899995978988259568950
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILILDEpTSaLD~~te~~I~~~l~~~~-~-~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G~~~eLl~ 1231 (1253)
                      |||||+.+|++||||||||+||+.+...+++.|+++. + |.|+|+|||+++.+.. ||||++|++|++++.|+|+|+.+
T Consensus       151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf             87577604661454478667998998899899999986359879999799999999699999998999999869999986


Q ss_pred             CCCCHHH
Q ss_conf             0162389
Q 000851         1232 KENGIYK 1238 (1253)
Q Consensus      1232 ~~~g~y~ 1238 (1253)
                      +....|.
T Consensus       231 ~P~~~~~  237 (242)
T d1oxxk2         231 NPVSIQV  237 (242)
T ss_dssp             SCSSHHH
T ss_pred             CCCCHHH
T ss_conf             8999799

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.2e-45  Score=381.91  Aligned_cols=221  Identities=33%  Similarity=0.513  Sum_probs=189.4

Q ss_pred             EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH---HH
Q ss_conf             999968898799989-65411203877489689998499996889999984237898418999995179999787---72
Q 000851         1006 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRS---LR 1081 (1253)
Q Consensus      1006 I~~~nVsf~Y~~~~~-~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~---lR 1081 (1253)
                      |+++||+++|+.+.. ..+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.++|.|+...+...   +|
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR   81 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred             EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf             79982799969998148986150578869979999899989888999987588636677328867685208755511554


Q ss_pred             CCEEEECCCCCCCCC-CHHHHHCCCC--CCCC----HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             332888067876521-3888850299--8879----99999999990098999728787654225999988924999999
Q 000851         1082 RKIGLVQQEPALFST-TIYENIKYGN--EDAS----EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA 1154 (1253)
Q Consensus      1082 ~~i~~v~Qd~~LF~g-TIreNL~~g~--~~~s----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRla 1154 (1253)
                      ++++||||++.+|+. |++||+.++.  ...+    .+.+.++++.+++.++.           ......||||||||++
T Consensus        82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva  150 (240)
T d3dhwc1          82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA  150 (240)
T ss_dssp             HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHHHHHHH
T ss_conf             16643022522279964999999999984999899999999999976990355-----------4894349999998999


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf             9998605998789726668999698999999999872-8-9649998159115550-48899995978988259568950
Q 000851         1155 IARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1155 LARALlr~p~ILILDEpTSaLD~~te~~I~~~l~~~~-~-~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G~~~eLl~ 1231 (1253)
                      |||||+.+|++|||||||++||+.+...|++.|+++. + |.|+|+|||+++.+.. ||||++|++|++++.|+++|+++
T Consensus       151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~  230 (240)
T d3dhwc1         151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  230 (240)
T ss_dssp             HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred             HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf             86401058986874465565898885679999999986469789998389999998699999997999999879999972


Q ss_pred             CCCCHH
Q ss_conf             016238
Q 000851         1232 KENGIY 1237 (1253)
Q Consensus      1232 ~~~g~y 1237 (1253)
                      +....|
T Consensus       231 ~P~~~~  236 (240)
T d3dhwc1         231 HPKTPL  236 (240)
T ss_dssp             SSCCTT
T ss_pred             CCCCHH
T ss_conf             899857

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=4.8e-44  Score=372.99  Aligned_cols=225  Identities=30%  Similarity=0.487  Sum_probs=189.8

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC--------
Q ss_conf             499996889879998965411203877489689998499996889999984237898418999995179999--------
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLN-------- 1076 (1253)
Q Consensus      1005 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~-------- 1076 (1253)
                      .|+++|++++|.   +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+        
T Consensus         2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~   78 (258)
T d1b0ua_           2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV   78 (258)
T ss_dssp             CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred             EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf             699997899989---99988150668869979999989998299999999747667899779999993367752000023


Q ss_pred             -----HHHHHCCEEEECCCCCCCCC-CHHHHHCCC---CCCCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             -----78772332888067876521-388885029---988799----99999999900989997287876542259999
Q 000851         1077 -----LRSLRRKIGLVQQEPALFST-TIYENIKYG---NEDASE----IELMKATKAANAHGFISRMPEGYQSHVGDRGV 1143 (1253)
Q Consensus      1077 -----~~~lR~~i~~v~Qd~~LF~g-TIreNL~~g---~~~~s~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~ 1143 (1253)
                           ...+|++++||+|++.+|+. |+.||+.++   ....+.    +.+.++++.+++.+....          ....
T Consensus        79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~p~  148 (258)
T d1b0ua_          79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG----------KYPV  148 (258)
T ss_dssp             SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT----------SCGG
T ss_pred             CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC----------CCCC
T ss_conf             517679997454489983323141101021365657876299989999999999998299524430----------6822


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHC-CCEEEEEECCEEE
Q ss_conf             889249999999998605998789726668999698999999999872-89649998159115550-4889999597898
Q 000851         1144 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVA 1221 (1253)
Q Consensus      1144 ~LSGGQrQRlaLARALlr~p~ILILDEpTSaLD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~-aD~I~vl~~G~iv 1221 (1253)
                      +|||||+||++|||||..+|++|||||||++||+.+...|++.|+++. +|+|+|+|||+++.+.. ||||+||++|+|+
T Consensus       149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv  228 (258)
T d1b0ua_         149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE  228 (258)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf             05677888989999984399878852455568878888998765541036883389948999999869999999799999


Q ss_pred             EECCHHHHHHCCCCHHH-HHHH
Q ss_conf             82595689500162389-9999
Q 000851         1222 EIGSHEQLLRKENGIYK-QLIR 1242 (1253)
Q Consensus      1222 e~G~~~eLl~~~~g~y~-~l~~ 1242 (1253)
                      +.|+++|++++....|. +++.
T Consensus       229 ~~g~~~ev~~~P~~~~~~~ll~  250 (258)
T d1b0ua_         229 EEGDPEQVFGNPQSPRLQQFLK  250 (258)
T ss_dssp             EEECHHHHHHSCCSHHHHHHHH
T ss_pred             EECCHHHHHHCCCCHHHHHHHH
T ss_conf             9849999983899999999881

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.8e-44  Score=373.88  Aligned_cols=214  Identities=36%  Similarity=0.531  Sum_probs=176.7

Q ss_pred             EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH----
Q ss_conf             999968898799989-654112038774896899984999968899999842378984189999951799997877----
Q 000851         1006 IELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL---- 1080 (1253)
Q Consensus      1006 I~~~nVsf~Y~~~~~-~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~l---- 1080 (1253)
                      |+++||+++|+.... ..+|+||||+|++||.+||+||||||||||++++.|+++|++|+|++||.++..++...+    
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf             89990799948998208987133778849979999889999821655750688777766269999985768855512312


Q ss_pred             HCCEEEECCCCCCCCC-CHHHHHCCC-----CCCCCHHHHH-HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             2332888067876521-388885029-----9887999999-99999009899972878765422599998892499999
Q 000851         1081 RRKIGLVQQEPALFST-TIYENIKYG-----NEDASEIELM-KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1081 R~~i~~v~Qd~~LF~g-TIreNL~~g-----~~~~s~~ei~-~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRl 1153 (1253)
                      |++|+||+|++.+|+. |++||+.++     .+..+.++.. ++.+..+.    ..+++.   .......+||||||||+
T Consensus        82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~L~~~---~~~~~p~~LSGGqkQRv  154 (230)
T d1l2ta_          82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM----AELEER---FANHKPNQLSGGQQQRV  154 (230)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHH----TTCCGG---GTTCCGGGSCHHHHHHH
T ss_pred             CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HCHHHH---HHCCCHHHCCHHHHHHH
T ss_conf             55577880412417686688877578887224789999999999998876----242345---53488023899999999


Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHCCCEEEEEECCEEEEECCH
Q ss_conf             99998605998789726668999698999999999872-8-9649998159115550488999959789882595
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSH 1226 (1253)
Q Consensus      1154 aLARALlr~p~ILILDEpTSaLD~~te~~I~~~l~~~~-~-~~TvI~IsHrl~~i~~aD~I~vl~~G~ive~G~~ 1226 (1253)
                      +|||||+.+|++||||||||+||+.+...|++.|+++. + |+|+|+|||+++.++.||||++|++|+|++.|++
T Consensus       155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf             987565227888994687654698999999999999998439999998788899986998999989999995257

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.5e-42  Score=360.63  Aligned_cols=220  Identities=25%  Similarity=0.421  Sum_probs=183.2

Q ss_pred             CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH-C
Q ss_conf             749999688987999896541120387748968999849999688999998423789841899999517999978772-3
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR-R 1082 (1253)
Q Consensus      1004 ~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR-~ 1082 (1253)
                      .-|+++|++++|.   +..+|+||||+|++||.+||+||||||||||+++++|+++|++|+|++||.|+...+.+..+ .
T Consensus         5 ~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~   81 (240)
T d1ji0a_           5 IVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM   81 (240)
T ss_dssp             EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred             EEEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf             0799961899989---9888830257888997999999999859999999967888880389842443446608888874


Q ss_pred             CEEEECCCCCCCCC-CHHHHHCCCCCC-CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             32888067876521-388885029988-7999999999990098999728787654225999988924999999999860
Q 000851         1083 KIGLVQQEPALFST-TIYENIKYGNED-ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160 (1253)
Q Consensus      1083 ~i~~v~Qd~~LF~g-TIreNL~~g~~~-~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl 1160 (1253)
                      .++|+||++.+|+. |++||+.++... ...++..+.++.+-  +...    ++.........+||||||||++|||||+
T Consensus        82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~----~l~~~~~~~~~~LSGG~~Qrv~iAraL~  155 (240)
T d1ji0a_          82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFP----RLKERLKQLGGTLSGGEQQMLAIGRALM  155 (240)
T ss_dssp             TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCH----HHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHH----CHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf             235567655457763699999988873278889999999999--8741----7688875854338999999999999998


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf             5998789726668999698999999999872-89649998159115550-488999959789882595689500
Q 000851         1161 KNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1161 r~p~ILILDEpTSaLD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G~~~eLl~~ 1232 (1253)
                      .+|++|||||||++||+.+...+++.|+++. +|+|+|++||+++.+.. ||||++|++|++++.|+++|++++
T Consensus       156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  229 (240)
T d1ji0a_         156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN  229 (240)
T ss_dssp             TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred             HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf             29987400398867999999999999999996899899995889999996999999989999998489998429

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=7e-43  Score=363.47  Aligned_cols=216  Identities=25%  Similarity=0.399  Sum_probs=182.2

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC-C
Q ss_conf             499996889879998965411203877489689998499996889999984237898418999995179999787723-3
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR-K 1083 (1253)
Q Consensus      1005 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~-~ 1083 (1253)
                      -|+++||+.+|.   +..+|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.|+...++.+.++ .
T Consensus         4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g   80 (254)
T d1g6ha_           4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   80 (254)
T ss_dssp             EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf             699977899979---96887121799889979999999998499999999779768873799999966405699999833


Q ss_pred             EEEECCCCCCCCC-CHHHHHCCCCCC---------------CCHHHH-HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             2888067876521-388885029988---------------799999-99999900989997287876542259999889
Q 000851         1084 IGLVQQEPALFST-TIYENIKYGNED---------------ASEIEL-MKATKAANAHGFISRMPEGYQSHVGDRGVQLS 1146 (1253)
Q Consensus      1084 i~~v~Qd~~LF~g-TIreNL~~g~~~---------------~s~~ei-~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1146 (1253)
                      |+++||++.+|.. |++||+.++...               ..+++. .++.      +.++.+  +++........+||
T Consensus        81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~l~~~~~~~~~~LS  152 (254)
T d1g6ha_          81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF------KILEFL--KLSHLYDRKAGELS  152 (254)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHH------HHHHHT--TCGGGTTSBGGGSC
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHH------HHHHHC--CCCHHCCCCHHHCC
T ss_conf             8725776424788742321430133303450456654213532899999999------998761--96302059535699


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHC-CCEEEEEECCEEEEEC
Q ss_conf             249999999998605998789726668999698999999999872-89649998159115550-4889999597898825
Q 000851         1147 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIG 1224 (1253)
Q Consensus      1147 GGQrQRlaLARALlr~p~ILILDEpTSaLD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G 1224 (1253)
                      ||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. +|+|+|+|+|+++.+.. ||||+||++|++++.|
T Consensus       153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g  232 (254)
T d1g6ha_         153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG  232 (254)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf             18888999999997592723243976569999999999999999978998999947699999869999999699899996


Q ss_pred             CHHHHHH
Q ss_conf             9568950
Q 000851         1225 SHEQLLR 1231 (1253)
Q Consensus      1225 ~~~eLl~ 1231 (1253)
                      +++|+.+
T Consensus       233 ~~~e~~~  239 (254)
T d1g6ha_         233 RGEEEIK  239 (254)
T ss_dssp             ESHHHHH
T ss_pred             CHHHHHH
T ss_conf             6899865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.5e-42  Score=355.01  Aligned_cols=227  Identities=22%  Similarity=0.428  Sum_probs=190.0

Q ss_pred             CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCC
Q ss_conf             74999968898799989654112038774896899984999968899999842378984189999951799997877233
Q 000851         1004 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 1083 (1253)
Q Consensus      1004 ~~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~ 1083 (1253)
                      |.|+++|++.+|.   +..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.|+.+ ....+|++
T Consensus         1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~   76 (238)
T d1vpla_           1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL   76 (238)
T ss_dssp             CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred             CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf             9789995899999---9999806256884897999999999999999999966988788879998672446-83988721


Q ss_pred             EEEECCCCCCCCC-CHHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             2888067876521-3888850299--887999999999990098999728787654225999988924999999999860
Q 000851         1084 IGLVQQEPALFST-TIYENIKYGN--EDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAIL 1160 (1253)
Q Consensus      1084 i~~v~Qd~~LF~g-TIreNL~~g~--~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl 1160 (1253)
                      ++||||++.+|.. |++||+.+..  ...+..++.+.++.+     ++.+  +++....+....||||||||++|||||+
T Consensus        77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~  149 (238)
T d1vpla_          77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM  149 (238)
T ss_dssp             EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             86750015468786677888989986179989999999999-----9867--9788885045337998989999999986


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCC-CHH
Q ss_conf             5998789726668999698999999999872-89649998159115550-48899995978988259568950016-238
Q 000851         1161 KNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKEN-GIY 1237 (1253)
Q Consensus      1161 r~p~ILILDEpTSaLD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G~~~eLl~~~~-g~y 1237 (1253)
                      .+|++|+|||||++||+.+.+.+++.+++.. +|+|+|++||+++.+.. ||||++|++|++++.|+|+|+.++.+ ...
T Consensus       150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~  229 (238)
T d1vpla_         150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI  229 (238)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSH
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHH
T ss_conf             59998873379889798999999999999996599899995989999996999999989999999289999865287669


Q ss_pred             HHHH
Q ss_conf             9999
Q 000851         1238 KQLI 1241 (1253)
Q Consensus      1238 ~~l~ 1241 (1253)
                      .+.+
T Consensus       230 ~~~f  233 (238)
T d1vpla_         230 EEVF  233 (238)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=8.8e-42  Score=354.45  Aligned_cols=210  Identities=30%  Similarity=0.568  Sum_probs=185.0

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf             89987899889999964112028883899999985899938999999971588997589999961799888887400378
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~  456 (1253)
                      |+++|++++|++   .+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|+|+.+.+..  |+++||
T Consensus         2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~   76 (229)
T d3d31a2           2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF   76 (229)
T ss_dssp             EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred             EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf             899989999499---788433789879989999989998299999999647688878899956734652165--740561


Q ss_pred             EECCCCCCCC-CHHHHHHCCCC---CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             8046766812-38999733999---9999999999998171888861998754412589987896899999999984249
Q 000851          457 VSQEPALFAT-SIANNILLGKE---DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN  532 (1253)
Q Consensus       457 v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~~  532 (1253)
                      |+|++.+|+. |++||+.++..   ....+++.++++..++.++.           .....+||||||||++||||++.+
T Consensus        77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGG~~QRvaiAraL~~~  145 (229)
T d3d31a2          77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVTN  145 (229)
T ss_dssp             ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-----------HCCHHHCCHHHHCCHHHHHHHHCC
T ss_conf             512111174665778888877640553899999999982565557-----------589554799984014030434436


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHHHC
Q ss_conf             98889837688889998999999999870--89739998149235440-498999969789884072022211
Q 000851          533 PKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       533 ~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |+++||||||++||+.+...+++.++++.  .+.|+|++||+++.+.. |||+++|++|++++.|++++++++
T Consensus       146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~  218 (229)
T d3d31a2         146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK  218 (229)
T ss_dssp             CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf             7714434787679989999999999999864796899974999999996999999979999998699999868

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=2.6e-42  Score=358.82  Aligned_cols=217  Identities=30%  Similarity=0.466  Sum_probs=186.6

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf             58998789988999996411202888389999998589993899999997158899758999996179988---888740
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---LKWLRE  452 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~---~~~~~~  452 (1253)
                      .|+++|+++.|+.+...+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|+++...+   ...+|+
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr   82 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf             89997579998899989980407898799899999899980999999997586888745999999951373111531204


Q ss_pred             CCEEEECCCCCCCC-CHHHHHHCCCCCC--C----HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             03788046766812-3899973399999--9----999999999817188886199875441258998789689999999
Q 000851          453 QMGLVSQEPALFAT-SIANNILLGKEDA--S----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI  525 (1253)
Q Consensus       453 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrial  525 (1253)
                      ++|||+|++.+|+. |++||+.++....  +    .+++.+.++..++.++..           .....||||||||++|
T Consensus        83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~p~~LSGGqkQRvai  151 (242)
T d1oxxk2          83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-----------HFPRELSGAQQQRVAL  151 (242)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH-----------CCHHHCCHHHHHHHHH
T ss_conf             51477304334666657777665567613799999999999986659176664-----------8954599999858998


Q ss_pred             HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHHHC
Q ss_conf             9984249988898376888899989999999998708--9739998149235440-498999969789884072022211
Q 000851          526 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       526 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      ||||..+|+++++||||++||+.+...+++.++++.+  +.|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~  231 (242)
T d1oxxk2         152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN  231 (242)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf             75776046614544786679989988998999999863598799997999999996999999989999998699999868


Q ss_pred             C
Q ss_conf             9
Q 000851          603 G  603 (1253)
Q Consensus       603 ~  603 (1253)
                      .
T Consensus       232 P  232 (242)
T d1oxxk2         232 P  232 (242)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1e-41  Score=353.87  Aligned_cols=213  Identities=29%  Similarity=0.473  Sum_probs=184.9

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf             58998789988999996411202888389999998589993899999997158899758999996179988888740037
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~  455 (1253)
                      .|+++|++++|++  ..+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|+|+...+..  +++||
T Consensus         6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig   81 (239)
T d1v43a3           6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS   81 (239)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred             EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf             4999879999999--9998130678879989999999998299999999758999878799916413547700--01589


Q ss_pred             EEECCCCCCCC-CHHHHHHCCCCCC--CH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             88046766812-3899973399999--99----99999999817188886199875441258998789689999999998
Q 000851          456 LVSQEPALFAT-SIANNILLGKEDA--SM----DRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA  528 (1253)
Q Consensus       456 ~v~Q~~~l~~~-ti~~ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARa  528 (1253)
                      ||+|++.+|+. |++||+.++....  +.    +++.+.++..++           ..........||||||||++||||
T Consensus        82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGq~QRvaiAra  150 (239)
T d1v43a3          82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-----------EELLNRYPAQLSGGQRQRVAVARA  150 (239)
T ss_dssp             EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-----------GGGTTSCTTTCCSSCHHHHHHHHH
T ss_pred             EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHHH
T ss_conf             980033534222099999999987399999999999999987598-----------556609954699999889999766


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHHHCC
Q ss_conf             424998889837688889998999999999870--89739998149235440-4989999697898840720222119
Q 000851          529 VLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       529 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      |..+|++++|||||++||+.+...+++.++++.  .++|+|++||+++.+.. ||||++|++|++++.|+++++..+.
T Consensus       151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P  228 (239)
T d1v43a3         151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP  228 (239)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf             404998243068866689899989999999998731980799948999999869999999899999985999998689

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-41  Score=352.84  Aligned_cols=215  Identities=33%  Similarity=0.518  Sum_probs=185.0

Q ss_pred             EEEEEEEEECCCCCC--CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf             899878998899999--6411202888389999998589993899999997158899758999996179988888---74
Q 000851          377 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW---LR  451 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~--~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~---~~  451 (1253)
                      |+++|+++.|+.+..  .+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|+|+...+...   +|
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR   81 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred             EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf             79982799969998148986150578869979999899989888999987588636677328867685208755511554


Q ss_pred             CCCEEEECCCCCCCC-CHHHHHHCCC-----CCC-CHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             003788046766812-3899973399-----999-999999999981718888619987544125899878968999999
Q 000851          452 EQMGLVSQEPALFAT-SIANNILLGK-----EDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       452 ~~i~~v~Q~~~l~~~-ti~~ni~~~~-----~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqria  524 (1253)
                      +++|||+|++.+|+. |++||+.++.     +.. ..+++.+.++.+++.+..           ......||||||||++
T Consensus        82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva  150 (240)
T d3dhwc1          82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA  150 (240)
T ss_dssp             HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHHHHHHH
T ss_conf             16643022522279964999999999984999899999999999976990355-----------4894349999998999


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHHH
Q ss_conf             99984249988898376888899989999999998708--9739998149235440-49899996978988407202221
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      ||||+..+|+++|+||||++||+.+...+++.++++.+  +.|+|+|||++..+.. |||+++|++|++++.|+++++++
T Consensus       151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~  230 (240)
T d3dhwc1         151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  230 (240)
T ss_dssp             HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred             HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf             86401058986874465565898885679999999986469789998389999998699999997999999879999972


Q ss_pred             C
Q ss_conf             1
Q 000851          602 K  602 (1253)
Q Consensus       602 ~  602 (1253)
                      +
T Consensus       231 ~  231 (240)
T d3dhwc1         231 H  231 (240)
T ss_dssp             S
T ss_pred             C
T ss_conf             8

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.5e-42  Score=355.00  Aligned_cols=211  Identities=31%  Similarity=0.496  Sum_probs=184.3

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf             89987899889999964112028883899999985899938999999971588997589999961799888887400378
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~  456 (1253)
                      |+++|++++|++  ..+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|+++.+.+..  +++|||
T Consensus         1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~   76 (232)
T d2awna2           1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM   76 (232)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred             CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEEE
T ss_conf             999999999899--9998111778869989999989998299999999658788888899999977888644--432223


Q ss_pred             EECCCCCCCC-CHHHHHHCCCCCC------CHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             8046766812-3899973399999------99999999998171888861998754412589987896899999999984
Q 000851          457 VSQEPALFAT-SIANNILLGKEDA------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV  529 (1253)
Q Consensus       457 v~Q~~~l~~~-ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal  529 (1253)
                      |+|+|.+|+. |++||+.++....      ..+++.+.++..++.++..+.           ..+||||||||++|||||
T Consensus        77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAraL  145 (232)
T d2awna2          77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL  145 (232)
T ss_dssp             ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHHHH
T ss_conf             433420264333788978999875998899999999999757886566489-----------656999999999999997


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHHHC
Q ss_conf             24998889837688889998999999999870--89739998149235440-498999969789884072022211
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       530 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      +.+|++++|||||++||+.+...+++.++++.  .++|+|++||+++.+.. |||+++|++|++++.|+++|+++.
T Consensus       146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~  221 (232)
T d2awna2         146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  221 (232)
T ss_dssp             HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf             0399889975888788988998999999999874298799994899999996999999979999998089999738

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.2e-41  Score=353.19  Aligned_cols=210  Identities=32%  Similarity=0.494  Sum_probs=175.5

Q ss_pred             EEEEEEEEECCCCCC--CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf             899878998899999--64112028883899999985899938999999971588997589999961799888887----
Q 000851          377 IEFSEVCFAYPSRPH--MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL----  450 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~--~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~----  450 (1253)
                      |+++|++++|+.+..  .+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|.++...+...+    
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf             89990799948998208987133778849979999889999821655750688777766269999985768855512312


Q ss_pred             HCCCEEEECCCCCCCC-CHHHHHHCCC-----CCCCHHH----HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             4003788046766812-3899973399-----9999999----9999998171888861998754412589987896899
Q 000851          451 REQMGLVSQEPALFAT-SIANNILLGK-----EDASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQK  520 (1253)
Q Consensus       451 ~~~i~~v~Q~~~l~~~-ti~~ni~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqk  520 (1253)
                      |++||||+|+|.+++. |++||+.++.     ...+.++    +.+.++..++       ++.   .......+||||||
T Consensus        82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~---~~~~~p~~LSGGqk  151 (230)
T d1l2ta_          82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-------EER---FANHKPNQLSGGQQ  151 (230)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTC-------CGG---GTTCCGGGSCHHHH
T ss_pred             CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCH-------HHH---HHCCCHHHCCHHHH
T ss_conf             55577880412417686688877578887224789999999999998876242-------345---53488023899999


Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECC
Q ss_conf             99999998424998889837688889998999999999870--89739998149235440498999969789884072
Q 000851          521 QRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTH  596 (1253)
Q Consensus       521 qrialARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~~  596 (1253)
                      ||++|||||..+|++++||||||+||+.++..+++.+.++.  .+.|+|+|||+++.+..|||+++|++|+|+++|+.
T Consensus       152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf             999987565227888994687654698999999999999998439999998788899986998999989999995257

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=9.6e-41  Score=345.93  Aligned_cols=220  Identities=30%  Similarity=0.535  Sum_probs=181.2

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEE
Q ss_conf             99996889879998965411203877489689998499996889999984237898418999995179999787723328
Q 000851         1006 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 1085 (1253)
Q Consensus      1006 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1085 (1253)
                      +++ ++.-+|.   +. .+ ||||+++ +|.++|+||||||||||+++|.|+++|++|+|.+||.|+.++++.  |++|+
T Consensus         3 l~v-~~~k~~g---~~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig   73 (240)
T d2onka1           3 LKV-RAEKRLG---NF-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG   73 (240)
T ss_dssp             EEE-EEEEEET---TE-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred             EEE-EEEEEEC---CE-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf             999-9999989---99-99-9999749-979999979998099999999739998962899999998869989--92852


Q ss_pred             EECCCCCCCCC-CHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             88067876521-38888502998879999999999900989997287876542259999889249999999998605998
Q 000851         1086 LVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPS 1164 (1253)
Q Consensus      1086 ~v~Qd~~LF~g-TIreNL~~g~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1164 (1253)
                      ||||++.+|+. ||+||+.++....+..+..+-     +.+.++.+  |+..........||||||||++|||||+.+|+
T Consensus        74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~  146 (240)
T d2onka1          74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR  146 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf             252314435220155766653233677889999-----99999863--83756657944489999899999877751677


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCCHHHHHH
Q ss_conf             789726668999698999999999872-8-9649998159115550-488999959789882595689500162389999
Q 000851         1165 ILLLDEATSALDTASENLIQEALDKLM-E-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1241 (1253)
Q Consensus      1165 ILILDEpTSaLD~~te~~I~~~l~~~~-~-~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G~~~eLl~~~~g~y~~l~ 1241 (1253)
                      +|+||||||+||+.+...+++.++++. + +.|+|+|||+++.+.. ||||++|++|++++.|+++|+++..+...++++
T Consensus       147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl  226 (240)
T d2onka1         147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL  226 (240)
T ss_dssp             SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf             06752865558879999999999999874397699981899999996999999989999999069998329988999985

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.2e-41  Score=353.35  Aligned_cols=215  Identities=27%  Similarity=0.435  Sum_probs=184.7

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf             58998789988999996411202888389999998589993899999997158899758999996179988888----74
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW----LR  451 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~----~~  451 (1253)
                      .|+++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...    .|
T Consensus         3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~   80 (240)
T d1g2912           3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD   80 (240)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred             CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf             1899869999899--99985606688699899999999980999999996487889898999999803566444245322


Q ss_pred             CCCEEEECCCCCCCC-CHHHHHHCCCCC--CC----HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             003788046766812-389997339999--99----99999999981718888619987544125899878968999999
Q 000851          452 EQMGLVSQEPALFAT-SIANNILLGKED--AS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIA  524 (1253)
Q Consensus       452 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqria  524 (1253)
                      ++++||+|+|.+|+. |+.||+.++...  .+    .+++.+.++..++.++..+           ...+||||||||++
T Consensus        81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqkQRv~  149 (240)
T d1g2912          81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQRVA  149 (240)
T ss_dssp             SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHHHH
T ss_pred             CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHHHHHH
T ss_conf             5512002212223101166763306877299989999999999987599667629-----------93349999999999


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHHH
Q ss_conf             9998424998889837688889998999999999870-8-9739998149235440-49899996978988407202221
Q 000851          525 IARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-S-NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLIS  601 (1253)
Q Consensus       525 lARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~  601 (1253)
                      |||||..+|+++||||||++||+.+...+++.++++. + +.|+|++||+++.+.. ||++++|++|++++.|+++|++.
T Consensus       150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~  229 (240)
T d1g2912         150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (240)
T ss_dssp             HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf             99998269988982588765698999899999999986369889999599999999699999998999999859999982


Q ss_pred             CC
Q ss_conf             19
Q 000851          602 KG  603 (1253)
Q Consensus       602 ~~  603 (1253)
                      +.
T Consensus       230 ~P  231 (240)
T d1g2912         230 KP  231 (240)
T ss_dssp             SC
T ss_pred             CC
T ss_conf             89

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.3e-39  Score=336.67  Aligned_cols=217  Identities=23%  Similarity=0.398  Sum_probs=181.4

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-CC
Q ss_conf             58998789988999996411202888389999998589993899999997158899758999996179988888740-03
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE-QM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~-~i  454 (1253)
                      -++++|++++|++  ..+|+||||++++||+++|+||||||||||+++|.|+++|++|+|.++|+|+...++...++ .|
T Consensus         4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi   81 (254)
T d1g6ha_           4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI   81 (254)
T ss_dssp             EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf             6999778999799--68871217998899799999999984999999997797688737999999664056999998338


Q ss_pred             EEEECCCCCCCC-CHHHHHHCCCCCC----------------CHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf             788046766812-3899973399999----------------99999999998171888861998754412589987896
Q 000851          455 GLVSQEPALFAT-SIANNILLGKEDA----------------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSG  517 (1253)
Q Consensus       455 ~~v~Q~~~l~~~-ti~~ni~~~~~~~----------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSg  517 (1253)
                      +|++|+|.+|+. |++||+.++....                ..+...++.      +.++.+  ++.........+|||
T Consensus        82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~l~~~~~~~~~~LSg  153 (254)
T d1g6ha_          82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF------KILEFL--KLSHLYDRKAGELSG  153 (254)
T ss_dssp             EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHH------HHHHHT--TCGGGTTSBGGGSCH
T ss_pred             CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHH------HHHHHC--CCCHHCCCCHHHCCC
T ss_conf             725776424788742321430133303450456654213532899999999------998761--963020595356991


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEEC
Q ss_conf             89999999998424998889837688889998999999999870-89739998149235440-49899996978988407
Q 000851          518 GQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGT  595 (1253)
Q Consensus       518 GqkqrialARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~  595 (1253)
                      |||||++||||+..+|+++||||||++||+.+...+++.++++. +|+|++++||+++.+.. ||||++|++|+++++|+
T Consensus       154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~  233 (254)
T d1g6ha_         154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR  233 (254)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf             88889999999975927232439765699999999999999999789989999476999998699999996998999966


Q ss_pred             CCHHHHC
Q ss_conf             2022211
Q 000851          596 HVDLISK  602 (1253)
Q Consensus       596 ~~~l~~~  602 (1253)
                      ++|+.+.
T Consensus       234 ~~e~~~~  240 (254)
T d1g6ha_         234 GEEEIKN  240 (254)
T ss_dssp             SHHHHHH
T ss_pred             HHHHHHC
T ss_conf             8998654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.5e-40  Score=344.31  Aligned_cols=216  Identities=28%  Similarity=0.502  Sum_probs=182.8

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---------
Q ss_conf             58998789988999996411202888389999998589993899999997158899758999996179988---------
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQ---------  446 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~---------  446 (1253)
                      .|+++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+         
T Consensus         2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   79 (258)
T d1b0ua_           2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   79 (258)
T ss_dssp             CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf             6999978999899--99881506688699799999899982999999997476678997799999933677520000235


Q ss_pred             ----HHHHHCCCEEEECCCCCCCC-CHHHHHHCCC---CCCC----HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             ----88874003788046766812-3899973399---9999----9999999998171888861998754412589987
Q 000851          447 ----LKWLREQMGLVSQEPALFAT-SIANNILLGK---EDAS----MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ  514 (1253)
Q Consensus       447 ----~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~  514 (1253)
                          ...+|+++|||+|+|.+|+. |+.||+.++.   ....    .+++.+.++..++.+...          .....+
T Consensus        80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~~  149 (258)
T d1b0ua_          80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPVH  149 (258)
T ss_dssp             CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGGG
T ss_pred             CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH----------CCCCCC
T ss_conf             1767999745448998332314110102136565787629998999999999999829952443----------068220


Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEE
Q ss_conf             89689999999998424998889837688889998999999999870-89739998149235440-49899996978988
Q 000851          515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVE  592 (1253)
Q Consensus       515 LSgGqkqrialARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~  592 (1253)
                      |||||+||++||||+..+|+++||||||++||+.+...+++.++++. +++|+|+|||+++.+.. ||||++|++|+|++
T Consensus       150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~  229 (258)
T d1b0ua_         150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE  229 (258)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf             56778889899999843998788524555688788889987655410368833899489999998699999997999999


Q ss_pred             EECCCHHHHCC
Q ss_conf             40720222119
Q 000851          593 SGTHVDLISKG  603 (1253)
Q Consensus       593 ~g~~~~l~~~~  603 (1253)
                      .|+++|++.+.
T Consensus       230 ~g~~~ev~~~P  240 (258)
T d1b0ua_         230 EGDPEQVFGNP  240 (258)
T ss_dssp             EECHHHHHHSC
T ss_pred             ECCHHHHHHCC
T ss_conf             84999998389

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.1e-39  Score=337.15  Aligned_cols=219  Identities=23%  Similarity=0.410  Sum_probs=181.2

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH-CCC
Q ss_conf             5899878998899999641120288838999999858999389999999715889975899999617998888874-003
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR-EQM  454 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~-~~i  454 (1253)
                      -++++|++++|++  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+...+....+ ..+
T Consensus         6 ~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi   83 (240)
T d1ji0a_           6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             EEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCC
T ss_conf             7999618999899--88883025788899799999999985999999996788888038984244344660888887423


Q ss_pred             EEEECCCCCCCC-CHHHHHHCCCCCC-CHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             788046766812-3899973399999-99999999998171888861998754412589987896899999999984249
Q 000851          455 GLVSQEPALFAT-SIANNILLGKEDA-SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN  532 (1253)
Q Consensus       455 ~~v~Q~~~l~~~-ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~~  532 (1253)
                      +|++|++.+|+. |++||+.++.... ..+...+.....  .+...    ++.........+||||||||++||||+..+
T Consensus        84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~  157 (240)
T d1ji0a_          84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI--FSLFP----RLKERLKQLGGTLSGGEQQMLAIGRALMSR  157 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH--HHHCH----HHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHH----CHHHHHHCCHHHCCHHHHHHHHHHHHHHHC
T ss_conf             556765545776369999998887327888999999999--98741----768887585433899999999999999829


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHHHC
Q ss_conf             98889837688889998999999999870-89739998149235440-498999969789884072022211
Q 000851          533 PKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       533 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      |++++|||||++||+.+...+++.++++. +|+|++++||+++.+.. |||+++|++|++++.|+++|+.++
T Consensus       158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  229 (240)
T d1ji0a_         158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN  229 (240)
T ss_dssp             CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf             987400398867999999999999999996899899995889999996999999989999998489998429

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.5e-39  Score=332.23  Aligned_cols=218  Identities=23%  Similarity=0.432  Sum_probs=183.5

Q ss_pred             CCEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf             75899878998899999641120288838999999858999389999999715889975899999617998888874003
Q 000851          375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM  454 (1253)
Q Consensus       375 ~~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i  454 (1253)
                      |.|+++|++++|++.  .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+.+. ....|+.+
T Consensus         1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i   77 (238)
T d1vpla_           1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI   77 (238)
T ss_dssp             CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred             CCEEEEEEEEEECCE--EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf             978999589999999--998062568848979999999999999999999669887888799986724468-39887218


Q ss_pred             EEEECCCCCCCC-CHHHHHHCCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             788046766812-38999733999--999999999999817188886199875441258998789689999999998424
Q 000851          455 GLVSQEPALFAT-SIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       455 ~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~  531 (1253)
                      +||||++.+|.. |++||+.+...  .....++.+..+..  .+..     ++.........+||||||||++||||++.
T Consensus        78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--l~~~-----~l~~~~~~~~~~lSgG~~qrv~iA~al~~  150 (238)
T d1vpla_          78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA--TEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALMV  150 (238)
T ss_dssp             EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHH-----CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC-----CCHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf             6750015468786677888989986179989999999999--9867-----97888850453379989899999999865


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHHHC
Q ss_conf             998889837688889998999999999870-89739998149235440-498999969789884072022211
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       532 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                      +|++++|||||++||+.+...+++.++++. +|+|+|++||+++.+.. ||||++|++|+++..|+++++..+
T Consensus       151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  223 (238)
T d1vpla_         151 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER  223 (238)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf             9998873379889798999999999999996599899995989999996999999989999999289999865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=7.3e-38  Score=322.32  Aligned_cols=208  Identities=29%  Similarity=0.497  Sum_probs=175.2

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf             89987899889999964112028883899999985899938999999971588997589999961799888887400378
Q 000851          377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       377 i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~  456 (1253)
                      +++ ++..+|++-   .+ |+||++. +++++|+||||||||||+++|.|+++|++|+|.++|+|+...++.  |++|||
T Consensus         3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~   74 (240)
T d2onka1           3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF   74 (240)
T ss_dssp             EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred             EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf             999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522


Q ss_pred             EECCCCCCCC-CHHHHHHCCCCCCCHHH----HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             8046766812-38999733999999999----999999817188886199875441258998789689999999998424
Q 000851          457 VSQEPALFAT-SIANNILLGKEDASMDR----VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR  531 (1253)
Q Consensus       457 v~Q~~~l~~~-ti~~ni~~~~~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~  531 (1253)
                      |+|++.+|+. ||+||+.++.......+    +.+.++..           |+..........||||||||++||||++.
T Consensus        75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~-----------gl~~~~~~~~~~LSGG~kQRvaiAral~~  143 (240)
T d2onka1          75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALVI  143 (240)
T ss_dssp             CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----------CCHHHHHCCHHHCCHHHHHHHHHHHHHHC
T ss_conf             5231443522015576665323367788999999999863-----------83756657944489999899999877751


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHHHCC
Q ss_conf             9988898376888899989999999998708--9739998149235440-4989999697898840720222119
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMS--NRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISKG  603 (1253)
Q Consensus       532 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~  603 (1253)
                      +|++++||||||+||+.+...+++.++++.+  +.|+|++||+++.+.. ||++++|++|++++.|+++|+++..
T Consensus       144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~  218 (240)
T d2onka1         144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC
T ss_conf             677067528655588799999999999998743976999818999999969999999899999990699983299

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-38  Score=325.36  Aligned_cols=209  Identities=26%  Similarity=0.401  Sum_probs=181.1

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf             49999688987999896541120387748968999849999688999998423789841899999517999978772332
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      -++++||+++|       .|++|||+|++||.+||+||||||||||+++|.|++ |.+|+|.++|.|+..++...++.+.
T Consensus         3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~   74 (231)
T d1l7vc_           3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR   74 (231)
T ss_dssp             EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred             EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf             99998741571-------555888899489899999899980999999994887-9955999999999869989998640


Q ss_pred             EEECCCCC-CCCCCHHHHHCCCCCCCC-HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf             88806787-652138888502998879-999999999900989997287876542259999889249999999998605-
Q 000851         1085 GLVQQEPA-LFSTTIYENIKYGNEDAS-EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILK- 1161 (1253)
Q Consensus      1085 ~~v~Qd~~-LF~gTIreNL~~g~~~~s-~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr- 1161 (1253)
                      +|++|+.. .|..++.+|+.++..+.. .+.+.++++..++           +..++....+||||||||++||||+++ 
T Consensus        75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~LSgG~~Qrv~iA~al~~~  143 (231)
T d1l7vc_          75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQI  143 (231)
T ss_dssp             EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf             24512135774420988764100146689999999986598-----------7676768445699889999999999851


Q ss_pred             ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf             ------998789726668999698999999999872-89649998159115550-488999959789882595689500
Q 000851         1162 ------NPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1232 (1253)
Q Consensus      1162 ------~p~ILILDEpTSaLD~~te~~I~~~l~~~~-~~~TvI~IsHrl~~i~~-aD~I~vl~~G~ive~G~~~eLl~~ 1232 (1253)
                            +|+++||||||++||+.+...+++.++++. +|+|+|+++|+++.+.. ||||++|++|++++.|+++|+++.
T Consensus       144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~  222 (231)
T d1l7vc_         144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP  222 (231)
T ss_dssp             CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred             CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf             7133899889997187777898999999999999986799999996779999997999999979989998899998188

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.5e-35  Score=297.13  Aligned_cols=209  Identities=25%  Similarity=0.420  Sum_probs=178.8

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf             58998789988999996411202888389999998589993899999997158899758999996179988888740037
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~  455 (1253)
                      -++++||+++|      .|+++||+|++||+++|+||||||||||+++|.|++ |++|+|.++|+++...+...++...+
T Consensus         3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~   75 (231)
T d1l7vc_           3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA   75 (231)
T ss_dssp             EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred             EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf             99998741571------555888899489899999899980999999994887-99559999999998699899986402


Q ss_pred             EEECCCC-CCCCCHHHHHHCCCCCCC-HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf             8804676-681238999733999999-999999999817188886199875441258998789689999999998424--
Q 000851          456 LVSQEPA-LFATSIANNILLGKEDAS-MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLR--  531 (1253)
Q Consensus       456 ~v~Q~~~-l~~~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~--  531 (1253)
                      |++|+.. .|..++.+++.++..+.. .+.+.+.++..++           +..++....+||||||||++||||+++  
T Consensus        76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~LSgG~~Qrv~iA~al~~~~  144 (231)
T d1l7vc_          76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQIT  144 (231)
T ss_dssp             EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf             4512135774420988764100146689999999986598-----------76767684456998899999999998517


Q ss_pred             -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHHHC
Q ss_conf             -----998889837688889998999999999870-89739998149235440-498999969789884072022211
Q 000851          532 -----NPKILLLDEATSALDAESELIVQRALEKIM-SNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK  602 (1253)
Q Consensus       532 -----~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~  602 (1253)
                           +|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|+++|++..
T Consensus       145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~  222 (231)
T d1l7vc_         145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP  222 (231)
T ss_dssp             TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred             CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf             133899889997187777898999999999999986799999996779999997999999979989998899998188

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7.5e-35  Score=297.58  Aligned_cols=191  Identities=20%  Similarity=0.419  Sum_probs=158.2

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCE
Q ss_conf             49999688987999896541120387748968999849999688999998423789841899999517999978772332
Q 000851         1005 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 1084 (1253)
Q Consensus      1005 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i 1084 (1253)
                      .|+++|++++|+    .++|+|+||+|++||.+||+||||||||||+++++|+++|++|+|.+||.++.     .+|.++
T Consensus         2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i   72 (200)
T d1sgwa_           2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI   72 (200)
T ss_dssp             EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred             EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCE
T ss_conf             599998999939----92884208898599899999999971999999996620567788999989626-----736708


Q ss_pred             EEECCCCCCCCC-CHHHHHCCC----CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             888067876521-388885029----988799999999999009899972878765422599998892499999999986
Q 000851         1085 GLVQQEPALFST-TIYENIKYG----NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI 1159 (1253)
Q Consensus      1085 ~~v~Qd~~LF~g-TIreNL~~g----~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL 1159 (1253)
                      +|+||++.++.. |+.||+...    ....+++++.++++..++.+        ++..+    .+||||||||++||||+
T Consensus        73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al  140 (200)
T d1sgwa_          73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTL  140 (200)
T ss_dssp             EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHH
T ss_conf             9995013578882899999999975488637999999998748856--------30126----86897188889999988


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEEC
Q ss_conf             0599878972666899969899999999987289649998159115550488999959
Q 000851         1160 LKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1217 (1253)
Q Consensus      1160 lr~p~ILILDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aD~I~vl~~ 1217 (1253)
                      +.+|+++||||||++||+.++..+++.+.+..+++++++|+|+ +.+..||++.+|..
T Consensus       141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~  197 (200)
T d1sgwa_         141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK  197 (200)
T ss_dssp             TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred             HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf             6499899986862016999999999999999867999999991-62544161234010

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.7e-32  Score=274.69  Aligned_cols=191  Identities=19%  Similarity=0.423  Sum_probs=154.0

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf             58998789988999996411202888389999998589993899999997158899758999996179988888740037
Q 000851          376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG  455 (1253)
Q Consensus       376 ~i~~~~v~f~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~  455 (1253)
                      .|+++|++|+|+.   ++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..     .+.+++
T Consensus         2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF   73 (200)
T ss_dssp             EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred             EEEEEEEEEEECC---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf             5999989999399---28842088985998999999999719999999966205677889999896267-----367089


Q ss_pred             EEECCCCCCCC-CHHHHHHCC----CCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             88046766812-389997339----9999999999999981718888619987544125899878968999999999842
Q 000851          456 LVSQEPALFAT-SIANNILLG----KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVL  530 (1253)
Q Consensus       456 ~v~Q~~~l~~~-ti~~ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~  530 (1253)
                      |++|++.++.. |+.+|+.+.    ......+++.++.+..+..+        ++..+    .+||||||||++||||++
T Consensus        74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al~  141 (200)
T d1sgwa_          74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTLL  141 (200)
T ss_dssp             EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHHH
T ss_conf             995013578882899999999975488637999999998748856--------30126----868971888899999886


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEEC
Q ss_conf             499888983768888999899999999987089739998149235440498999969
Q 000851          531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN  587 (1253)
Q Consensus       531 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~  587 (1253)
                      .+|+++||||||++||+.++..+++.+.++.+++++++++|+. .+..||.+.+|.+
T Consensus       142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~  197 (200)
T d1sgwa_         142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK  197 (200)
T ss_dssp             SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf             4998999868620169999999999999998679999999916-2544161234010

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.98  E-value=2.3e-26  Score=227.91  Aligned_cols=318  Identities=15%  Similarity=0.202  Sum_probs=282.6

Q ss_pred             CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31799999962145688999999999999966789999999999883237899610143589999999999999999999
Q 000851           34 SGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPHRLTSRISEHALYLVYLGLVALVSAW  113 (1253)
Q Consensus        34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  113 (1253)
                      +..++++++|.+++++ .++++.++..+.+++.+..|++++.++|.....+ +    ...+...++.++++.++..++.+
T Consensus         1 Wk~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~-~----~~~l~~~~~~~~~~~~~~~i~~~   74 (319)
T d3b60a2           1 WQTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-D----RSVLLWMPLVVIGLMILRGITSY   74 (319)
T ss_dssp             CHHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-T----HHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9689999999999999-9999999999999999999999999999874468-7----78999999999999997645335


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999998099223502688118999999789999999989899999899999999999998
Q 000851          114 IGVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFT  193 (1253)
Q Consensus       114 ~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1253)
                      ++.+++.+.+.++..++|.+++++++++|+.+|++ .++|++++++++|++.+.+.+......++..+...++.++.++.
T Consensus        75 ~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  153 (319)
T d3b60a2          75 ISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY  153 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             46654434310001100047777650101111023-33221111121212100001111120011233445668888876


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97889999999999999999999999989999999999999999999993699999981099999999999999999989
Q 000851          194 SVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGK  273 (1253)
Q Consensus       194 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~  273 (1253)
                      ++|.++++.++.+|+..+......++.++..++.++..++.++...|.++|++++|.|++|+.+.+++++..++..+...
T Consensus       154 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~  233 (319)
T d3b60a2         154 YSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGM  233 (319)
T ss_dssp             HTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             52002102566899999988766668778789887644567788777624872353111010245666665313567788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999809889678999999999999999999999999999999999999997
Q 000851          274 KSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISII  353 (1253)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l  353 (1253)
                      +.....+...+...++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..++++.++.+|+.+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~ell  313 (319)
T d3b60a2         234 KMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL  313 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88877774064010000002379999999999809978999999999999999999999999999999999999999996


Q ss_pred             HCCCC
Q ss_conf             22478
Q 000851          354 KENSH  358 (1253)
Q Consensus       354 ~~~~~  358 (1253)
                      |.++|
T Consensus       314 d~~~E  318 (319)
T d3b60a2         314 DSEQE  318 (319)
T ss_dssp             HSCCS
T ss_pred             CCCCC
T ss_conf             69989

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=3.1e-26  Score=226.90  Aligned_cols=319  Identities=12%  Similarity=0.085  Sum_probs=274.1

Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999996214568899999999999996678999999999988323789961-0-1435899999999999999999999
Q 000851           37 FLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDSLGHLSSHPH-R-LTSRISEHALYLVYLGLVALVSAWI  114 (1253)
Q Consensus        37 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~  114 (1253)
                      +||+++|.+|+++ .++.++++.++.+++....|++++.++|.+........ . ....+...++.++.+.++...+.++
T Consensus         2 lKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (323)
T d2hyda2           2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI   80 (323)
T ss_dssp             HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999999999999-999999999999999999999999999998626774215568999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999980992235026881189999997899999999898999998999999999999989
Q 000851          115 GVAFWMQTGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTS  194 (1253)
Q Consensus       115 ~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1253)
                      +.++..+.+.++..++|.+++++++++|+.||++ .++|++++++++|++.+++.+...+..++..+...++.+++++.+
T Consensus        81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~  159 (323)
T d2hyda2          81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL  159 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             9999999998556778888766540233210001-222110001111332100111345420111466533465440000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78899999999999999999999999899999999999999999999936999999810999999999999999999899
Q 000851          195 VWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKK  274 (1253)
Q Consensus       195 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  274 (1253)
                      +|.++++.++..|+..+....+.++.++..++.++..++.++.+.|.++|+++||.|++|+.+.+++.+..++..+...|
T Consensus       160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k  239 (323)
T d2hyda2         160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK  239 (323)
T ss_dssp             CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf             14688899998877777776412333202677898999999787887559702346764111002330223111101567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999998098896789999999999999999999999999999999999999972
Q 000851          275 SGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIAKGKAAAANIISIIK  354 (1253)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~  354 (1253)
                      ..............+..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..++++.++++|+.+++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd  319 (323)
T d2hyda2         240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID  319 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             76520000111110120558999999999998499889999999999999999999999999999999999999999977


Q ss_pred             CCC
Q ss_conf             247
Q 000851          355 ENS  357 (1253)
Q Consensus       355 ~~~  357 (1253)
                      ++|
T Consensus       320 ~e~  322 (323)
T d2hyda2         320 EDY  322 (323)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             999

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=6.7e-22  Score=191.38  Aligned_cols=317  Identities=17%  Similarity=0.247  Sum_probs=281.2

Q ss_pred             CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02999989730045799999999999886788999999999997519992467748989999999999999999999999
Q 000851          667 PSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHY  746 (1253)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  746 (1253)
                      ..+++++++.+++++.++++.++..+.++..+..+..++.+++.......   ......+...++++.++..++.+++.+
T Consensus         2 k~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~l~~~~~~~~~~~~~~~i~~~~~~~   78 (319)
T d3b60a2           2 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPLVVIGLMILRGITSYISSY   78 (319)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT---HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68999999999999999999999999999999999999999998744687---789999999999999976453354665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999983997643346787468999999549999999988899999999999999999999969
Q 000851          747 FYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW  826 (1253)
Q Consensus       747 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~  826 (1253)
                      ...+.+.++..++|.++++++++.|..+|+.  +++|++++++++|++.+...+...+...+..+...+..++.++..+|
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  156 (319)
T d3b60a2          79 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW  156 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCHHHHHHHHHCCCCHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             4434310001100047777650101111023--33221111121212100001111120011233445668888876520


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999956999999999999999999881169999708279999999999848999999999
Q 000851          827 RLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRG  906 (1253)
Q Consensus       827 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ir~~~~~~~~~~~~~~~~~~~~~~~~~~~  906 (1253)
                      .+++++++..|+.........+...+...+.++...+..+...|.++|++++|+++.|+.+.+++.+..++..+...+..
T Consensus       157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  236 (319)
T d3b60a2         157 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV  236 (319)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             02102566899999988766668778789887644567788777624872353111010245666665313567788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99989999999999999999999999999816989888999999999999999999987999999999899999973233
Q 000851          907 HISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILYRK  986 (1253)
Q Consensus       907 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  986 (1253)
                      ...........++..+..++++++|.+++..|.++.|++++++.+......|+..+......+.++..+.+|+.++++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~  316 (319)
T d3b60a2         237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE  316 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             77774064010000002379999999999809978999999999999999999999999999999999999999996699


Q ss_pred             CC
Q ss_conf             56
Q 000851          987 TA  988 (1253)
Q Consensus       987 ~~  988 (1253)
                      +|
T Consensus       317 ~E  318 (319)
T d3b60a2         317 QE  318 (319)
T ss_dssp             CS
T ss_pred             CC
T ss_conf             89

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=9.3e-22  Score=190.22  Aligned_cols=317  Identities=13%  Similarity=0.148  Sum_probs=273.7

Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998973004579999999999988678899999999999751999246774----89899999999999999999999
Q 000851          669 IWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQIKR----VVDQVALIFVGLAVVTIPVYLLQ  744 (1253)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  744 (1253)
                      +++++++.+++++.+....++..+.+....+.++.++.+++............    ....+...+.+..+....+.+.+
T Consensus         2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (323)
T d2hyda2           2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR   81 (323)
T ss_dssp             HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999999999999999999999999999986267742155689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999839976433467874689999995499999999888999999999999999999999
Q 000851          745 HYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFIL  824 (1253)
Q Consensus       745 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~~~  824 (1253)
                      .+...+.+.+...++|.+++++++++|++||+.  +++|++++++++|++.+++.+...+...+.++...+..++.++..
T Consensus        82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~  159 (323)
T d2hyda2          82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL  159 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             999999998556778888766540233210001--222110001111332100111345420111466533465440000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             69999999999999999999999999569999999999999999998811699997082799999999998489999999
Q 000851          825 SWRLAAVVAASLPLLIGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALL  904 (1253)
Q Consensus       825 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ir~~~~~~~~~~~~~~~~~~~~~~~~~  904 (1253)
                      +|.++++.++..|+..+......+..++..++.++..++..+.+.|.++|+++||++|.++.+.+++.+..++..+...+
T Consensus       160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k  239 (323)
T d2hyda2         160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK  239 (323)
T ss_dssp             CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf             14688899998877777776412333202677898999999787887559702346764111002330223111101567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999899999999999999999999999998169898889999999999999999999879999999998999999732
Q 000851          905 RGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVLIITALAVAETLALAPDIVKGSQALGPVFGILY  984 (1253)
Q Consensus       905 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  984 (1253)
                      ..............+..+...+++++|.+++..|.+++|+++++..+......|+..+......+.++..+.+|+.++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd  319 (323)
T d2hyda2         240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID  319 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             76520000111110120558999999999998499889999999999999999999999999999999999999999977


Q ss_pred             CCC
Q ss_conf             335
Q 000851          985 RKT  987 (1253)
Q Consensus       985 ~~~  987 (1253)
                      +++
T Consensus       320 ~e~  322 (323)
T d2hyda2         320 EDY  322 (323)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             999

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.49  E-value=1.6e-15  Score=139.01  Aligned_cols=159  Identities=11%  Similarity=0.057  Sum_probs=112.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf             89998499996889999984237898418999995179999787723328880678765213888850299887999999
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 1115 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreNL~~g~~~~s~~ei~ 1115 (1253)
                      +++|+||+|||||||++.++|.++|..|.+.+++.+................++...++..+..++...+......+.  
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY--   79 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--
T ss_conf             899998999389999999981488886469987713288887653112336677788754113455443023037625--


Q ss_pred             HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf             9999900989997287876542259999889249999999998605998789726668999698999999999872--89
Q 000851         1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM--EG 1193 (1253)
Q Consensus      1116 ~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILILDEpTSaLD~~te~~I~~~l~~~~--~~ 1193 (1253)
                                                 ..+|+|++|+.++++++.++|+++++|||+...+.  .....+.+.+..  .+
T Consensus        80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~  130 (178)
T d1ye8a1          80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN  130 (178)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred             ---------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCC
T ss_conf             ---------------------------66532013789999997409974230277731004--5799999998750579


Q ss_pred             CEEEEECCCCHHHHCCCEEEEEECCEEEEECC
Q ss_conf             64999815911555048899995978988259
Q 000851         1194 RTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1225 (1253)
Q Consensus      1194 ~TvI~IsHrl~~i~~aD~I~vl~~G~ive~G~ 1225 (1253)
                      +|+|+++|+.+....+|++..+++|++++.+.
T Consensus       131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred             CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf             78999974477898636599871999999899

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.31  E-value=6.6e-14  Score=125.80  Aligned_cols=159  Identities=12%  Similarity=0.050  Sum_probs=104.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf             99998589993899999997158899758999996179988888740037880467668123899973399999999999
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVI  485 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~  485 (1253)
                      .++|+||+|||||||++.++|.+++..|.+.+++.+.................+...++..+...+...++.....    
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   77 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----   77 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECH----
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_conf             8999989993899999999814888864699877132888876531123366777887541134554430230376----


Q ss_pred             HHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf             9999817188886199875441258998789689999999998424998889837688889998999999999870--89
Q 000851          486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SN  563 (1253)
Q Consensus       486 ~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~  563 (1253)
                                               ....+++|+++|.++++++..+|+++++|||....+.  ...+.+.+.+..  .+
T Consensus        78 -------------------------~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~  130 (178)
T d1ye8a1          78 -------------------------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN  130 (178)
T ss_dssp             -------------------------HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred             -------------------------CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCC
T ss_conf             -------------------------2566532013789999997409974230277731004--5799999998750579


Q ss_pred             CEEEEECCCCHHHHHCCEEEEEECCEEEEEEC
Q ss_conf             73999814923544049899996978988407
Q 000851          564 RTTIVVAHRLSTVRDVDTIMVLKNGQVVESGT  595 (1253)
Q Consensus       564 ~t~i~itH~~~~~~~~d~i~vl~~G~i~~~g~  595 (1253)
                      .++|+++|+.+....+|++..+++|++++-+.
T Consensus       131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred             CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf             78999974477898636599871999999899

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=4.5e-10  Score=94.39  Aligned_cols=72  Identities=22%  Similarity=0.332  Sum_probs=61.5

Q ss_pred             CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHCCCEEEEE
Q ss_conf             8892499999999986----059987897266689996989999999998728-96499981591155504889999
Q 000851         1144 QLSGGQKQRVAIARAI----LKNPSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAHRLSTIRNADKIAVL 1215 (1253)
Q Consensus      1144 ~LSGGQrQRlaLARAL----lr~p~ILILDEpTSaLD~~te~~I~~~l~~~~~-~~TvI~IsHrl~~i~~aD~I~vl 1215 (1253)
                      .+|||||.++++|-.+    ..++|+++||||+++||+.....+.+.|.+... +.-+|+|||++..+..+|+++..
T Consensus       332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf             32230479999999999954799977999688777899999999999999728998899995878999736617999

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=1.8e-09  Score=89.52  Aligned_cols=73  Identities=22%  Similarity=0.308  Sum_probs=61.4

Q ss_pred             CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHCCEEEEE
Q ss_conf             87896899999999984----249988898376888899989999999998708-97399981492354404989999
Q 000851          513 TQLSGGQKQRIAIARAV----LRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHRLSTVRDVDTIMVL  585 (1253)
Q Consensus       513 ~~LSgGqkqrialARal----~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~vl  585 (1253)
                      ..||||||.++++|-.+    ..++|+++||||+++||+.....+.+.|.+... +.-+|+|||+...+..||+++.+
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf             332230479999999999954799977999688777899999999999999728998899995878999736617999

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=3.2e-09  Score=87.40  Aligned_cols=75  Identities=27%  Similarity=0.373  Sum_probs=62.1

Q ss_pred             CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCEEEE--EEC
Q ss_conf             8892499999999986----0599878972666899969899999999987289649998159115550488999--959
Q 000851         1144 QLSGGQKQRVAIARAI----LKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAV--LQQ 1217 (1253)
Q Consensus      1144 ~LSGGQrQRlaLARAL----lr~p~ILILDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i~~aD~I~v--l~~ 1217 (1253)
                      .+|+||++.+.++..+    ..+++++++|||-++|++.....+.+.|++..++.-+|++||++..+..+|+++.  +++
T Consensus       219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~  298 (308)
T d1e69a_         219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN  298 (308)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf             02577766777776655654226744554320335797899999999998554887999989889997324289999969


Q ss_pred             C
Q ss_conf             7
Q 000851         1218 G 1218 (1253)
Q Consensus      1218 G 1218 (1253)
                      |
T Consensus       299 g  299 (308)
T d1e69a_         299 G  299 (308)
T ss_dssp             S
T ss_pred             C
T ss_conf             9

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=2.1e-08  Score=80.66  Aligned_cols=76  Identities=26%  Similarity=0.367  Sum_probs=65.3

Q ss_pred             CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEE--EE
Q ss_conf             8789689999999998----42499888983768888999899999999987089739998149235440498999--96
Q 000851          513 TQLSGGQKQRIAIARA----VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMV--LK  586 (1253)
Q Consensus       513 ~~LSgGqkqrialARa----l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~v--l~  586 (1253)
                      ..+|+|||+...++..    ...+++++++|||-++|+|.....+.+.++...++.-+|++||+...+..+|+++.  ++
T Consensus       218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~  297 (308)
T d1e69a_         218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV  297 (308)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf             10257776677777665565422674455432033579789999999999855488799998988999732428999996


Q ss_pred             CC
Q ss_conf             97
Q 000851          587 NG  588 (1253)
Q Consensus       587 ~G  588 (1253)
                      +|
T Consensus       298 ~g  299 (308)
T d1e69a_         298 NG  299 (308)
T ss_dssp             SS
T ss_pred             CC
T ss_conf             99

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.04  E-value=0.0064  Score=35.73  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=28.1

Q ss_pred             CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             4112028883899999985899938999999971
Q 000851          393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       393 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .|+++.--+.+|+++.|.|++|+||||++.-++-
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             6888746978980899994799979999999997

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.019  Score=31.79  Aligned_cols=120  Identities=19%  Similarity=0.290  Sum_probs=63.1

Q ss_pred             EEEEEC-CCEEEEECCCCCCHHHHHHHH--------HCCCCCCC-CEEEECCEECCCCCHHHHHCCCEEEECCCCCCC-C
Q ss_conf             288838-999999858999389999999--------71588997-589999961799888887400378804676681-2
Q 000851          398 NFSVDA-GKTFAFVGPSGSGKSTIISMV--------QRLYEPTS-GKILLDGHDLKSLQLKWLREQMGLVSQEPALFA-T  466 (1253)
Q Consensus       398 ~l~i~~-g~~~~ivG~sGsGKSTl~~ll--------~g~~~~~~-G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~  466 (1253)
                      ++.+.+ +....|.|||.|||||+++.+        .|.+-|.+ .++.+-                     + .+|. -
T Consensus        34 di~l~~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~---------------------d-~I~~~~   91 (234)
T d1wb9a2          34 PLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPI---------------------D-RIFTRV   91 (234)
T ss_dssp             EEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCC---------------------C-EEEEEE
T ss_pred             EEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCC---------------------H-HHEEEE
T ss_conf             579889953999954673136899998799999987297674176661344---------------------2-023487


Q ss_pred             CHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             38999733999999999999999817188886199875441258998789689999999998424998889837688889
Q 000851          467 SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD  546 (1253)
Q Consensus       467 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~~~~ililDE~ts~lD  546 (1253)
                      ...|++.-|.... ..++.+..+      .++                              -..+..++++||...+-+
T Consensus        92 ~~~d~~~~~~S~F-~~E~~~~~~------il~------------------------------~~~~~sLvliDE~~~gT~  134 (234)
T d1wb9a2          92 GAADDLASGRSTF-MVEMTETAN------ILH------------------------------NATEYSLVLMDEIGRGTS  134 (234)
T ss_dssp             C-----------C-HHHHHHHHH------HHH------------------------------HCCTTEEEEEESCCCCSS
T ss_pred             CCCCCCCCCHHHH-HHHHHHHHH------HHH------------------------------HCCCCCEEEECCCCCCCC
T ss_conf             4675343653189-999999999------997------------------------------454660885322235877


Q ss_pred             HHHHHHHHHH-HHHHC-C-CCEEEEECCCCHHH
Q ss_conf             9989999999-99870-8-97399981492354
Q 000851          547 AESELIVQRA-LEKIM-S-NRTTIVVAHRLSTV  576 (1253)
Q Consensus       547 ~~~~~~i~~~-l~~~~-~-~~t~i~itH~~~~~  576 (1253)
                      +.....+-.+ +..+. + +..++++||.....
T Consensus       135 ~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         135 TYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf             456667898764543204544289852468776

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.022  Score=31.26  Aligned_cols=152  Identities=18%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHH
Q ss_conf             41120288838999999858999389999999715889975899999617998888874003788046766812389997
Q 000851          393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNI  472 (1253)
Q Consensus       393 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni  472 (1253)
                      ++.+    +.||+.+.|.|++|+|||||+.-++--..  .|.=..+.....       ...+-|+.-+.  ....+.+.+
T Consensus        22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~~-------~~~vl~~~~E~--~~~~~~~Rl   86 (274)
T d1nlfa_          22 VLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELP-------TGPVIYLPAED--PPTAIHHRL   86 (274)
T ss_dssp             EETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCC-------CCCEEEEESSS--CHHHHHHHH
T ss_pred             HHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCCCC-------CCCEEEEECCC--HHHHHHHHH
T ss_conf             8689----55895899992899989999999999997--699721112357-------87368985123--499999999


Q ss_pred             HCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CH
Q ss_conf             3399999999999999981718888619987544125899878968999999999842499888983768888-----99
Q 000851          473 LLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-----DA  547 (1253)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~~~~ililDE~ts~l-----D~  547 (1253)
                      .--..+...+..........    +..       ..+.......-   ..+.-......+++++++|--.+..     |.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~  152 (274)
T d1nlfa_          87 HALGAHLSAEERQAVADGLL----IQP-------LIGSLPNIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEENAS  152 (274)
T ss_dssp             HHHHTTSCHHHHHHHHHHEE----ECC-------CTTSCCCTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCTTCH
T ss_pred             HHHHHCCCHHHHHCCCCCCE----ECC-------CCCCCCHHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCCCCCCH
T ss_conf             99862368666531233323----214-------56742035789---99999887526765896281354226652322


Q ss_pred             HHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf             98999999999870--897399981492
Q 000851          548 ESELIVQRALEKIM--SNRTTIVVAHRL  573 (1253)
Q Consensus       548 ~~~~~i~~~l~~~~--~~~t~i~itH~~  573 (1253)
                      .....+...+..+.  .+++++++.|--
T Consensus       153 ~~~~~~~~~l~~la~~~~~~vi~v~H~~  180 (274)
T d1nlfa_         153 GPMAQVIGRMEAIAADTGCSIVFLHHAS  180 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf             5689999887777644797540131005

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.27  E-value=0.011  Score=33.86  Aligned_cols=176  Identities=15%  Similarity=0.154  Sum_probs=82.4

Q ss_pred             CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCCCCCCCHHHHHCC-EEEECCCCCCCCCCH
Q ss_conf             654112038774896899984999968899999842-378984189999951799997877233-288806787652138
Q 000851         1021 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR-FYDPISGTVLIDGYDIRTLNLRSLRRK-IGLVQQEPALFSTTI 1098 (1253)
Q Consensus      1021 ~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~g-l~~p~~G~I~idG~di~~i~~~~lR~~-i~~v~Qd~~LF~gTI 1098 (1253)
                      -+-|+++..-+.+|+.+.|.|++|+||||++.-++. +..-+.-.+.+-..   +.+......+ ++...+-+.--    
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~----   94 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQ----   94 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGG----
T ss_pred             CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHH----
T ss_conf             366888746978980899994799979999999997265533663457640---1111357769999864587101----


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCC
Q ss_conf             8885029988799999999999009899972878765422599998892499999999986--05998789726668999
Q 000851         1099 YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAI--LKNPSILLLDEATSALD 1176 (1253)
Q Consensus      1099 reNL~~g~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL--lr~p~ILILDEpTSaLD 1176 (1253)
                                 .+..-...++......+...+...-....-+........  ..+...+..  -.+|+++++|=-+ .++
T Consensus        95 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~-~l~  160 (277)
T d1cr2a_          95 -----------SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHIS-IVV  160 (277)
T ss_dssp             -----------CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEE-C--
T ss_pred             -----------HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCC-CCC
T ss_conf             -----------012222214567788898874035214662143310689--999986543213676259970542-120


Q ss_pred             H--------HHHHHHHHHHHHHC--CCCEEEEECCCC----------------HH------HH-CCCEEEEEEC
Q ss_conf             6--------98999999999872--896499981591----------------15------55-0488999959
Q 000851         1177 T--------ASENLIQEALDKLM--EGRTTIMVAHRL----------------ST------IR-NADKIAVLQQ 1217 (1253)
Q Consensus      1177 ~--------~te~~I~~~l~~~~--~~~TvI~IsHrl----------------~~------i~-~aD~I~vl~~ 1217 (1253)
                      +        .....+.+.++.+.  .+++|++++|=-                +.      +. .||.++.+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r  234 (277)
T d1cr2a_         161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER  234 (277)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf             34654430677899999999976501655203103563224445543333211212343001503869999984

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=5.2e-05  Score=52.83  Aligned_cols=133  Identities=13%  Similarity=-0.011  Sum_probs=54.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCC------CCC
Q ss_conf             89998499996889999984237898418999995179999787723328880678765213888850299------887
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN------EDA 1109 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreNL~~g~------~~~ 1109 (1253)
                      .+.|+||.|+|||||++.+.+.+....+.+.+.+.+........+......+.|+...+.....++.....      ...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV   82 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99998899971999999999999977997999984550122211465412343302466543001034441432231100


Q ss_pred             CHHHHHHHHHHHCHHHHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             99999999999009899972-87876542259999889249999999998605998789726
Q 000851         1110 SEIELMKATKAANAHGFISR-MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 1170 (1253)
Q Consensus      1110 s~~ei~~al~~a~l~~~I~~-lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILILDE 1170 (1253)
                      ..++...... ... +.+.. ...+.+..+.+.....+......+.+.+.++..++++++..
T Consensus        83 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (189)
T d2i3ba1          83 DLTSFEQLAL-PVL-RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGT  142 (189)
T ss_dssp             CHHHHHTTTT-TTT-CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEE
T ss_pred             CHHHHHHHHH-HHH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             3777777889-999-99988762189706861433330535999999999854686599961

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.14  E-value=0.035  Score=29.69  Aligned_cols=48  Identities=17%  Similarity=0.239  Sum_probs=32.6

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHH-HHHC-CCCEEEEECCCCHHHHH
Q ss_conf             499888983768888999899999999-9870-89739998149235440
Q 000851          531 RNPKILLLDEATSALDAESELIVQRAL-EKIM-SNRTTIVVAHRLSTVRD  578 (1253)
Q Consensus       531 ~~~~ililDE~ts~lD~~~~~~i~~~l-~~~~-~~~t~i~itH~~~~~~~  578 (1253)
                      .+..++++||...+-++.....+-.++ +.+. .+..++++||..+....
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l  162 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL  162 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred             CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf             97727855454568623320025888888886237613786520233322

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.09  E-value=0.0058  Score=36.07  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=20.9

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             389999998589993899999997158899758999
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILL  437 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i  437 (1253)
                      ..+..+.|+|++||||||+++.|+++.++..=-|++
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf             837888999403566257899986530145623311

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.03  E-value=0.036  Score=29.54  Aligned_cols=36  Identities=14%  Similarity=0.176  Sum_probs=27.8

Q ss_pred             CCCCCEE-EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             4112028-88389999998589993899999997158
Q 000851          393 VFENLNF-SVDAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       393 ~l~~i~l-~i~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .|+.+=- -+++|+.+.|.|++|||||+++.-++...
T Consensus        14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             7988456898698499999189999999999999999

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.01  E-value=0.039  Score=29.24  Aligned_cols=140  Identities=16%  Similarity=0.232  Sum_probs=73.8

Q ss_pred             CEEEEEEEEECCCC--CCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCCCCCC
Q ss_conf             49999688987999--8965411203877489689998499996889999984--------2378984189999951799
Q 000851         1005 NIELRNVSFKYPVR--PDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--------RFYDPISGTVLIDGYDIRT 1074 (1253)
Q Consensus      1005 ~I~~~nVsf~Y~~~--~~~~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~--------gl~~p~~G~I~idG~di~~ 1074 (1253)
                      .+++++.  ++|--  ....|=+|+++  . ++.+-|.|||.|||||++|.+.        |.+-|.+.           
T Consensus         9 ~~~i~~~--rHPlle~~~~~VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~-----------   72 (224)
T d1ewqa2           9 RLQIRAG--RHPVVERRTEFVPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE-----------   72 (224)
T ss_dssp             SEEEEEE--CCTTGGGTSCCCCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE-----------
T ss_pred             CEEEEEC--CCCEECCCCCEECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCC-----------
T ss_conf             2789857--188794899754555884--7-86799978873453234556589999985250461375-----------


Q ss_pred             CCHHHHHCCEEEECCCCCCCCC-CHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             9978772332888067876521-388885029988799999999999009899972878765422599998892499999
Q 000851         1075 LNLRSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 1153 (1253)
Q Consensus      1075 i~~~~lR~~i~~v~Qd~~LF~g-TIreNL~~g~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRl 1153 (1253)
                                +-+|.-..+|.. ...||+.-+.... ..|+.+      +...+.                         
T Consensus        73 ----------~~i~~~d~I~~~~~~~d~~~~~~StF-~~el~~------~~~il~-------------------------  110 (224)
T d1ewqa2          73 ----------AHLPLFDGIYTRIGASDDLAGGKSTF-MVEMEE------VALILK-------------------------  110 (224)
T ss_dssp             ----------EEECCCSEEEEECCC------CCSHH-HHHHHH------HHHHHH-------------------------
T ss_pred             ----------EEEEECCEEEEEECCCCCCCCCCCHH-HHHHHH------HHHHHC-------------------------
T ss_conf             ----------19940116999987776023783078-986788------987750-------------------------


Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-HC-CCCEEEEECCCCHHHH
Q ss_conf             999986059987897266689996989999999998-72-8964999815911555
Q 000851         1154 AIARAILKNPSILLLDEATSALDTASENLIQEALDK-LM-EGRTTIMVAHRLSTIR 1207 (1253)
Q Consensus      1154 aLARALlr~p~ILILDEpTSaLD~~te~~I~~~l~~-~~-~~~TvI~IsHrl~~i~ 1207 (1253)
                           -..+..++|+||..++-|+..-..+-.++-+ +. .+++++++||..+...
T Consensus       111 -----~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         111 -----EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             -----HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             -----CCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf             -----289772785545456862332002588888888623761378652023332

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.042  Score=28.99  Aligned_cols=167  Identities=14%  Similarity=0.140  Sum_probs=76.6

Q ss_pred             CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHH
Q ss_conf             54112038774896899984999968899999842378984189999951799997877233288806787652138888
Q 000851         1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYEN 1101 (1253)
Q Consensus      1022 ~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreN 1101 (1253)
                      .++.+    +.||+.+.|.|++|+||||++.-++--..  .|.=..++....       ...+-|+.-|..  ...+.+.
T Consensus        21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~~-------~~~vl~~~~E~~--~~~~~~R   85 (274)
T d1nlfa_          21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELP-------TGPVIYLPAEDP--PTAIHHR   85 (274)
T ss_dssp             EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCC-------CCCEEEEESSSC--HHHHHHH
T ss_pred             HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCCCC-------CCCEEEEECCCH--HHHHHHH
T ss_conf             98689----55895899992899989999999999997--699721112357-------873689851234--9999999


Q ss_pred             HCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----C
Q ss_conf             50299887999999999990098999728787654225999988924999999999860599878972666899-----9
Q 000851         1102 IKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL-----D 1176 (1253)
Q Consensus      1102 L~~g~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILILDEpTSaL-----D 1176 (1253)
                      +.--..+.+.++......         .+  .+....   +.....-..+.+.-.+.-..+++++++|--++..     |
T Consensus        86 l~~~~~~~~~~~~~~~~~---------~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~  151 (274)
T d1nlfa_          86 LHALGAHLSAEERQAVAD---------GL--LIQPLI---GSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENA  151 (274)
T ss_dssp             HHHHHTTSCHHHHHHHHH---------HE--EECCCT---TSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred             HHHHHHCCCHHHHHCCCC---------CC--EECCCC---CCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCC
T ss_conf             999862368666531233---------32--321456---7420357899999988752676589628135422665232


Q ss_pred             HHHHHHHHHHHHHHC--CCCEEEEECCCCH------------------HHH-CCCEEEEEEC
Q ss_conf             698999999999872--8964999815911------------------555-0488999959
Q 000851         1177 TASENLIQEALDKLM--EGRTTIMVAHRLS------------------TIR-NADKIAVLQQ 1217 (1253)
Q Consensus      1177 ~~te~~I~~~l~~~~--~~~TvI~IsHrl~------------------~i~-~aD~I~vl~~ 1217 (1253)
                      ......+...++.+.  .++++|++.|--.                  .+. .+|.++.|..
T Consensus       152 ~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r  213 (274)
T d1nlfa_         152 SGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSS  213 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEE
T ss_conf             25689999887777644797540131005554446886653356427778742558999983

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.0039  Score=37.51  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=16.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf             899999985899938999999971588997589
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI  435 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i  435 (1253)
                      +|++++++|+||.|||||+|.|.+......|+|
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v  126 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV  126 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf             698089978898778888773053555010684

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.80  E-value=0.0043  Score=37.16  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             89689998499996889999984237898418999
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~i 1067 (1253)
                      +|++.+++|+||.|||||+|.|.+-..-..|+|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf             69808997889877888877305355501068420

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.047  Score=28.58  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=28.3

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf             88389999998589993899999997158899758999996
Q 000851          400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGH  440 (1253)
Q Consensus       400 ~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~  440 (1253)
                      .+++..-+.+.||+|||||++++.++..+...  -+.++..
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~   79 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS   79 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHH
T ss_conf             99988867866899888228999999982998--7998869

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.76  E-value=0.0021  Score=39.69  Aligned_cols=27  Identities=30%  Similarity=0.561  Sum_probs=19.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             999999858999389999999715889
Q 000851          404 GKTFAFVGPSGSGKSTIISMVQRLYEP  430 (1253)
Q Consensus       404 g~~~~ivG~sGsGKSTl~~ll~g~~~~  430 (1253)
                      |+++.|+|||||||||+++.|...++.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             749999899999999999999845899

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.048  Score=28.50  Aligned_cols=30  Identities=23%  Similarity=0.489  Sum_probs=26.0

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             883899999985899938999999971588
Q 000851          400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       400 ~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      .+++..-+.+.||+|+|||++++.+++...
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             999887578878998763047788787718

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.72  E-value=0.05  Score=28.37  Aligned_cols=154  Identities=16%  Similarity=0.148  Sum_probs=72.7

Q ss_pred             CCCCEEE-EEECCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHH
Q ss_conf             4112038-77489689998499996889999984237-898418999995179999787723328880678765213888
Q 000851         1023 IFENLNL-KVSAGRSLAVVGQSGSGKSTVISLVMRFY-DPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYE 1100 (1253)
Q Consensus      1023 vL~~isl-~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~-~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIre 1100 (1253)
                      -|+.+=- -+++|..+-|.|++|+||||++.-++.-. ....-.++++-    +.+...+.++                 
T Consensus        14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~----e~~~~~~~~~-----------------   72 (242)
T d1tf7a2          14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY----EESRAQLLRN-----------------   72 (242)
T ss_dssp             HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES----SSCHHHHHHH-----------------
T ss_pred             HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEC----CCCHHHHHHH-----------------
T ss_conf             7988456898698499999189999999999999999872324411212----6799999999-----------------


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHC-CCCCEEEEECCCCCCCHH
Q ss_conf             850299887999999999990098999728787654225999988924999999-999860-599878972666899969
Q 000851         1101 NIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVA-IARAIL-KNPSILLLDEATSALDTA 1178 (1253)
Q Consensus      1101 NL~~g~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRla-LARALl-r~p~ILILDEpTSaLD~~ 1178 (1253)
                      --.++   .+.++.            +.   .+.-...........  ....+. +.+++- .+|++++.|-.++.....
T Consensus        73 ~~~~~---~~~~~~------------~~---~~~~~~~~~~~~~~~--~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~  132 (242)
T d1tf7a2          73 AYSWG---MDFEEM------------ER---QNLLKIVCAYPESAG--LEDHLQIIKSEINDFKPARIAIDSLSALARGV  132 (242)
T ss_dssp             HHTTS---CCHHHH------------HH---TTSEEECCCCGGGSC--HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSS
T ss_pred             HHHCC---CCHHHH------------HH---CCCEEEEEEECCHHH--HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCC
T ss_conf             99829---986998------------54---586179973000101--79999999999984088533220431430489


Q ss_pred             HHHHHHHHHH---HHC--CCCEEEEECCCC----------HHHH-CCCEEEEEEC
Q ss_conf             8999999999---872--896499981591----------1555-0488999959
Q 000851         1179 SENLIQEALD---KLM--EGRTTIMVAHRL----------STIR-NADKIAVLQQ 1217 (1253)
Q Consensus      1179 te~~I~~~l~---~~~--~~~TvI~IsHrl----------~~i~-~aD~I~vl~~ 1217 (1253)
                      +...+.+.+.   ...  .++|++++.|.-          ..+. .+|-|+.++.
T Consensus       133 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~  187 (242)
T d1tf7a2         133 SNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY  187 (242)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf             9999999999999999986983999985675125544577640464216999998

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.71  E-value=0.051  Score=28.34  Aligned_cols=25  Identities=32%  Similarity=0.307  Sum_probs=17.1

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             3899999985899938999999971
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      +..+.+.++|++||||||+++-+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             9998999989999989999999997

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.70  E-value=0.029  Score=30.27  Aligned_cols=20  Identities=35%  Similarity=0.346  Sum_probs=9.2

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q ss_conf             99998589993899999997
Q 000851          406 TFAFVGPSGSGKSTIISMVQ  425 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~  425 (1253)
                      .+.++|++||||||+++.|.
T Consensus         4 lIii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             99998999999999999999

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.033  Score=29.81  Aligned_cols=30  Identities=13%  Similarity=0.313  Sum_probs=19.2

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             774896899984999968899999842378
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1030 ~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      .+++...+-+.||+|+|||++++.+++-+.
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             999887578878998763047788787718

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.53  E-value=0.0039  Score=37.46  Aligned_cols=28  Identities=32%  Similarity=0.456  Sum_probs=24.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             9689998499996889999984237898
Q 000851         1034 GRSLAVVGQSGSGKSTVISLVMRFYDPI 1061 (1253)
Q Consensus      1034 Ge~iaIvG~SGSGKSTL~~lL~gl~~p~ 1061 (1253)
                      |+.+.|+||||||||||++.|..-++..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~   29 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNL   29 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             7499998999999999999998458997

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.39  E-value=0.012  Score=33.32  Aligned_cols=35  Identities=31%  Similarity=0.463  Sum_probs=26.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             8999999858999389999999715889975899999
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG  439 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g  439 (1253)
                      .|+.+.|.||+||||||+++.|...+...  -+.+++
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~   37 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS   37 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf             98599998899998899999999995999--799068

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.069  Score=27.26  Aligned_cols=141  Identities=21%  Similarity=0.249  Sum_probs=71.9

Q ss_pred             CCEEEEEEEEECCC----CCCCCCCCCEEEEEECC-CEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCC
Q ss_conf             74999968898799----98965411203877489-689998499996889999984--------237898418999995
Q 000851         1004 GNIELRNVSFKYPV----RPDITIFENLNLKVSAG-RSLAVVGQSGSGKSTVISLVM--------RFYDPISGTVLIDGY 1070 (1253)
Q Consensus      1004 ~~I~~~nVsf~Y~~----~~~~~vL~~isl~I~~G-e~iaIvG~SGSGKSTL~~lL~--------gl~~p~~G~I~idG~ 1070 (1253)
                      +.+++++.  ++|-    ..+..|=+++  .+.++ ..+-|.|||.|||||++|.+.        |.+-|.+- -.+   
T Consensus        10 ~~l~i~~~--rHPlle~~~~~~~VpNdi--~l~~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~-a~~---   81 (234)
T d1wb9a2          10 PGIRITEG--RHPVVEQVLNEPFIANPL--NLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-VEI---   81 (234)
T ss_dssp             SCEEEEEE--CCTTHHHHCSSCCCCEEE--EECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEE---
T ss_pred             CCEEEEEE--ECCEEECCCCCCCCCEEE--EECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC-EEC---
T ss_conf             96899973--787797446998264057--9889953999954673136899998799999987297674176-661---


Q ss_pred             CCCCCCHHHHHCCEEEECCCCCCCC-CCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf             1799997877233288806787652-138888502998879999999999900989997287876542259999889249
Q 000851         1071 DIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQ 1149 (1253)
Q Consensus      1071 di~~i~~~~lR~~i~~v~Qd~~LF~-gTIreNL~~g~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQ 1149 (1253)
                                       +--..+|. -...|++.-+.... ..|+.+..      ..++                     
T Consensus        82 -----------------~~~d~I~~~~~~~d~~~~~~S~F-~~E~~~~~------~il~---------------------  116 (234)
T d1wb9a2          82 -----------------GPIDRIFTRVGAADDLASGRSTF-MVEMTETA------NILH---------------------  116 (234)
T ss_dssp             -----------------CCCCEEEEEEC-----------C-HHHHHHHH------HHHH---------------------
T ss_pred             -----------------CCCHHHEEEECCCCCCCCCHHHH-HHHHHHHH------HHHH---------------------
T ss_conf             -----------------34420234874675343653189-99999999------9997---------------------


Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEECCCCHHH
Q ss_conf             9999999986059987897266689996989999999-99872--896499981591155
Q 000851         1150 KQRVAIARAILKNPSILLLDEATSALDTASENLIQEA-LDKLM--EGRTTIMVAHRLSTI 1206 (1253)
Q Consensus      1150 rQRlaLARALlr~p~ILILDEpTSaLD~~te~~I~~~-l~~~~--~~~TvI~IsHrl~~i 1206 (1253)
                               -..+..++|+||.-++-++..-..+-.+ ++.+.  .++.+++.||..+..
T Consensus       117 ---------~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         117 ---------NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             ---------HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             ---------HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf             ---------454660885322235877456667898764543204544289852468776

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.00  E-value=0.0075  Score=35.16  Aligned_cols=27  Identities=30%  Similarity=0.315  Sum_probs=19.3

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             389999998589993899999997158
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+|.++.|+|++||||||+.+.|..-+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             997699988999999999999999998

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.01  Score=33.95  Aligned_cols=28  Identities=29%  Similarity=0.519  Sum_probs=24.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             8999999858999389999999715889
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLYEP  430 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~~~  430 (1253)
                      .|..+.|+||||+|||||.+.|...++.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~   28 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPL   28 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             9809999999999999999999863986

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.00015  Score=49.09  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=28.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             99999858999389999999715889975899999
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG  439 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g  439 (1253)
                      +.+.|+||+|+|||||++.+.+.+....+.+.+.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             69999889997199999999999997799799998

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.85  E-value=0.012  Score=33.56  Aligned_cols=36  Identities=28%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             89689998499996889999984237898418999995
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY 1070 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~ 1070 (1253)
                      .|+.+.|+|++||||||+++.|.+-+..  --+.+|+-
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~d   38 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHSD   38 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECHH
T ss_conf             9859999889999889999999999599--97990689

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.013  Score=33.23  Aligned_cols=66  Identities=21%  Similarity=0.309  Sum_probs=40.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE--E----------EECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHH
Q ss_conf             89689998499996889999984237898418--9----------99995179999787723328880678765213888
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGT--V----------LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYE 1100 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~--I----------~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIre 1100 (1253)
                      .|..+.|+|||||||+||.+.|+.-++...-.  |          .+||+|..-++.+...+.+   .++-++..+++..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i---~~g~flE~~~~~g   77 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI---SRDAFLEHAEVFG   77 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHHH---HHHHHEEEEEECC
T ss_conf             9809999999999999999999863986684278887636788655432123343289999875---4211126999878


Q ss_pred             H
Q ss_conf             8
Q 000851         1101 N 1101 (1253)
Q Consensus      1101 N 1101 (1253)
                      |
T Consensus        78 ~   78 (205)
T d1s96a_          78 N   78 (205)
T ss_dssp             E
T ss_pred             C
T ss_conf             4

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.096  Score=26.07  Aligned_cols=40  Identities=20%  Similarity=0.241  Sum_probs=28.0

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf             774896899984999968899999842378984189999951
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 1071 (1253)
Q Consensus      1030 ~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~d 1071 (1253)
                      .+++...+-+.||+|+|||++++.+++-+...  -+.++.-+
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~   80 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD   80 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHH
T ss_conf             99988867866899888228999999982998--79988699

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.0058  Score=36.03  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             99998589993899999997158899
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYEPT  431 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~~~  431 (1253)
                      .++|+|++|||||||++-|.+.+...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             89999189998999999999999977

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.67  E-value=0.016  Score=32.41  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=23.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             689998499996889999984237898418999995
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY 1070 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~ 1070 (1253)
                      +.+.|+|++||||||+++.|..-.   .|...++.-
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d   35 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRD   35 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECHH
T ss_conf             799998999999999999999957---997996039

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.66  E-value=0.05  Score=28.35  Aligned_cols=113  Identities=19%  Similarity=0.295  Sum_probs=65.7

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCCC
Q ss_conf             3899999985899938999999971588997589-999961799888887400378804676681238999733999999
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDAS  480 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i-~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~  480 (1253)
                      .++-.+.+.||+||||||.+..++...+.....| ++.+ ++. +.       +-.+.|.                    
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEd-PiE-~~-------~~~~~q~--------------------  206 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED-PIE-FD-------IDGIGQT--------------------  206 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES-SCC-SC-------CSSSEEE--------------------
T ss_pred             HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECC-CCC-CC-------CCCCCEE--------------------
T ss_conf             410548987678777447799986662578746999626-743-45-------6788702--------------------


Q ss_pred             HHHHHHHHHHHCCHHHHHCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999999981718888619987544125-89987896899999999984249988898376888899989999999998
Q 000851          481 MDRVIEAAKAANAHSFVEGLPDGYQTQVG-EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK  559 (1253)
Q Consensus       481 ~~~~~~~~~~~~~~~~i~~l~~g~~t~i~-~~g~~LSgGqkqrialARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~  559 (1253)
                                                .+. ..+.  +    ---++..++-.||++++..|..   |+++.....++-  
T Consensus       207 --------------------------~v~~~~~~--~----~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa--  249 (401)
T d1p9ra_         207 --------------------------QVNPRVDM--T----FARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS--  249 (401)
T ss_dssp             --------------------------ECBGGGTB--C----HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH--
T ss_pred             --------------------------EECCCCCC--C----HHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHH--
T ss_conf             --------------------------65587677--9----9999999984138889845768---759999999997--


Q ss_pred             HCCCCEEEEECCCCHHHHHCCE
Q ss_conf             7089739998149235440498
Q 000851          560 IMSNRTTIVVAHRLSTVRDVDT  581 (1253)
Q Consensus       560 ~~~~~t~i~itH~~~~~~~~d~  581 (1253)
                       ..|+.|+..-|--+.....+|
T Consensus       250 -~tGhlV~tTlHa~~a~~~~~R  270 (401)
T d1p9ra_         250 -LTGHLVMSTLHTNTAVGAVTR  270 (401)
T ss_dssp             -HTTCEEEEEECCSSSHHHHHH
T ss_pred             -HCCCEEEEEECCCCHHHHHHH
T ss_conf             -249858998336766766543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.58  E-value=0.012  Score=33.51  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             9999858999389999999715889
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYEP  430 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~~  430 (1253)
                      +++|.|++||||||+++.|...+..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             9997898878999999999998363

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.57  E-value=0.0042  Score=37.22  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=16.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             8999999858999389999999715889975899
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL  436 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~  436 (1253)
                      +|++++++|+||.|||||+|.|.+......|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf             3564999877873487898751517676403555

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.56  E-value=0.0042  Score=37.19  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             89689998499996889999984237898418999
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~i 1067 (1253)
                      +|++..++|+||.|||||+|.|.+-..-..|+|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf             35649998778734878987515176764035553

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.06  Score=27.72  Aligned_cols=45  Identities=27%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf             4998889837688889998999999999870897399981492354
Q 000851          531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV  576 (1253)
Q Consensus       531 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~  576 (1253)
                      .+..++++||+-. +.......+.+.+........+|++|++.+.+
T Consensus       130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i  174 (252)
T d1sxje2         130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI  174 (252)
T ss_dssp             -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred             CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf             8724999424333-45431112210022135664300010211100

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.41  E-value=0.016  Score=32.47  Aligned_cols=28  Identities=21%  Similarity=0.490  Sum_probs=22.2

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             3899999985899938999999971588
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      |+|-.++|.||+||||||+.+.|...+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             9988899982899988999999999858

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.37  E-value=0.0086  Score=34.66  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             89998499996889999984237898
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPI 1061 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~ 1061 (1253)
                      .++|+|++|||||||++-|.+.+...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             89999189998999999999999977

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.36  E-value=0.021  Score=31.55  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .++++|++|+|||||++.|.|.-
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999999999999997787

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.33  E-value=0.1  Score=25.82  Aligned_cols=44  Identities=23%  Similarity=0.391  Sum_probs=32.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf             998789726668999698999999999872896499981591155
Q 000851         1162 NPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTI 1206 (1253)
Q Consensus      1162 ~p~ILILDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IsHrl~~i 1206 (1253)
                      +.+++++||+-. |.......+.+.+.+....+..|+++++++.+
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i  174 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI  174 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred             CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf             724999424333-45431112210022135664300010211100

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.02  Score=31.61  Aligned_cols=46  Identities=20%  Similarity=0.325  Sum_probs=32.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCH
Q ss_conf             999985899938999999971588997589999961799888887400378804676681238
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSI  468 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti  468 (1253)
                      +++|.|++||||||+.+.|........+.                 ..+..+++|.+..+...
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~  127 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQV  127 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHH
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHH
T ss_conf             99996899998768999999997304689-----------------96599952156898458

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.26  E-value=0.015  Score=32.76  Aligned_cols=28  Identities=18%  Similarity=0.301  Sum_probs=24.9

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             4896899984999968899999842378
Q 000851         1032 SAGRSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1032 ~~Ge~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      ++|..|.|+|.+||||||+.+.|..-+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9976999889999999999999999986

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.23  E-value=0.019  Score=31.75  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=19.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             99999985899938999999971588
Q 000851          404 GKTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       404 g~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      .+++.|.|++||||||+++.|...+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             85999989999998999999999728

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.21  E-value=0.017  Score=32.21  Aligned_cols=41  Identities=29%  Similarity=0.495  Sum_probs=33.1

Q ss_pred             EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             03877489689998499996889999984237898418999
Q 000851         1027 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067 (1253)
Q Consensus      1027 isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~i 1067 (1253)
                      +...++.|..+.|+|++||||||+++.|++..+|..=-|.|
T Consensus       159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf             99999837888999403566257899986530145623311

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.16  E-value=0.013  Score=33.06  Aligned_cols=24  Identities=33%  Similarity=0.613  Sum_probs=19.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             999998589993899999997158
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +.++|.|++|||||||++.|...+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             289998999998999999999984

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.10  E-value=0.13  Score=25.11  Aligned_cols=89  Identities=16%  Similarity=0.162  Sum_probs=51.4

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf             74896899984999968899999842378984189999951799997877233288806787652138888502998879
Q 000851         1031 VSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 1110 (1253)
Q Consensus      1031 I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreNL~~g~~~~s 1110 (1253)
                      -+.-+.+-++|+.||||||+++-++.-    .|.+.++.        +.++.                            
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~~----------------------------   50 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLGS----------------------------   50 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHCS----------------------------
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHHH----------------------------
T ss_conf             999989999899999899999999976----59789760--------77778----------------------------


Q ss_pred             HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf             999999999900989997287876542259999889249999-99999860599878972
Q 000851         1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQR-VAIARAILKNPSILLLD 1169 (1253)
Q Consensus      1111 ~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQR-laLARALlr~p~ILILD 1169 (1253)
                      ...+.+.++        ..+..|.+..+.  ..+++-.+|++ +.+|+..=-+..++.||
T Consensus        51 ~~~~~~~~~--------~~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~  100 (172)
T d1yj5a2          51 WQRCVSSCQ--------AALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC  100 (172)
T ss_dssp             HHHHHHHHH--------HHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             HHHHHHHHH--------HHHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             889999999--------999779995551--76799999999999998558887999948

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.018  Score=31.99  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +++|.|++||||||+.+.|...+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998999787999999999996

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.014  Score=33.02  Aligned_cols=48  Identities=17%  Similarity=0.354  Sum_probs=33.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHH
Q ss_conf             89998499996889999984237898418999995179999787723328880678765213888
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYE 1100 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIre 1100 (1253)
                      .|||.|++||||||+.+.|..+..-..+                 ..++..+++|.+..+...++
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~  129 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLK  129 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHH
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHH
T ss_conf             9999689999876899999999730468-----------------99659995215689845888

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.03  E-value=0.013  Score=33.11  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=16.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             99999858999389999999715889
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYEP  430 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~~~  430 (1253)
                      +.++|+|++|||||||+.-|.+.+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             09999809999899999999999986

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.00  E-value=0.023  Score=31.13  Aligned_cols=28  Identities=21%  Similarity=0.526  Sum_probs=25.1

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             4896899984999968899999842378
Q 000851         1032 SAGRSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1032 ~~Ge~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      |+|-.|.|.|++||||||+.+.|..-+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             9988899982899988999999999858

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=93.91  E-value=0.025  Score=30.86  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=23.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             96899984999968899999842378
Q 000851         1034 GRSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1034 Ge~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      .+.|.|.|++||||||+++.|...+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             85999989999998999999999728

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.90  E-value=0.018  Score=31.99  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .++|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHCCC
T ss_conf             9999899998799999985298

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.88  E-value=0.028  Score=30.46  Aligned_cols=29  Identities=31%  Similarity=0.531  Sum_probs=23.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf             99998589993899999997158899758
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYEPTSGK  434 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~~~~G~  434 (1253)
                      .++|+|++|+|||||+|.|.|...-..|.
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~   86 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGNEEEGA   86 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             79998999997899999995888677756

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.02  Score=31.58  Aligned_cols=27  Identities=33%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             389999998589993899999997158
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      ..+.++.|.|++||||||+.+.|...+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             987189998999989899999999986

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.70  E-value=0.023  Score=31.19  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             8999849999688999998423789
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDP 1060 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p 1060 (1253)
                      .|||.|++||||||+++.|...+..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             9997898878999999999998363

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.011  Score=33.83  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89999998589993899999997158
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +|.++.++|++||||||+.+.|...+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99699988999999999999999999

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.68  E-value=0.023  Score=31.13  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .++|+|.+|+||||++|.|.|.-
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89998999986999999985898

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.59  E-value=0.0095  Score=34.32  Aligned_cols=43  Identities=28%  Similarity=0.317  Sum_probs=27.8

Q ss_pred             EEEECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEE
Q ss_conf             88838999999858999389999999715889--97589999961
Q 000851          399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP--TSGKILLDGHD  441 (1253)
Q Consensus       399 l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g~~  441 (1253)
                      +.-.+|.++.+.|.|||||||+.+.|...+..  .--.+.+||.+
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~   63 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   63 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf             858998699998999999899999999887774275089975367

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.50  E-value=0.02  Score=31.59  Aligned_cols=25  Identities=24%  Similarity=0.604  Sum_probs=22.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             6899984999968899999842378
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      ++|+|+|++|||||||++.|..-+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             2899989999989999999999849

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.031  Score=30.04  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=14.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             999998589993899999997158
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +.+.|+||||+||+||++.|...+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf             719999989999999999999709

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.024  Score=30.99  Aligned_cols=28  Identities=36%  Similarity=0.385  Sum_probs=24.2

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             4896899984999968899999842378
Q 000851         1032 SAGRSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1032 ~~Ge~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      +.+..+.|+|++||||||+++.|..-+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9871899989999898999999999869

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=93.38  E-value=0.025  Score=30.86  Aligned_cols=32  Identities=28%  Similarity=0.555  Sum_probs=24.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             99999858999389999999715889975899999
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG  439 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g  439 (1253)
                      +.+.|+||+||||||+++.|...+.   +...+++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf             0899989999998999999999809---9889830

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.033  Score=29.90  Aligned_cols=48  Identities=10%  Similarity=0.190  Sum_probs=29.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCC-C----------CEEEECCCCCCCCCHHHHHC
Q ss_conf             689998499996889999984237898-4----------18999995179999787723
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYDPI-S----------GTVLIDGYDIRTLNLRSLRR 1082 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~p~-~----------G~I~idG~di~~i~~~~lR~ 1082 (1253)
                      +.+.|+|||||||+||.+.|+.-++-. .          -.-..||+|.-=++.+...+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~   62 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ   62 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHH
T ss_conf             71999998999999999999970976765230016689998645576540531465455

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.24  E-value=0.077  Score=26.86  Aligned_cols=52  Identities=21%  Similarity=0.286  Sum_probs=34.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCCEEEE
Q ss_conf             999985899938999999971588--99758999996179988888740037880
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYE--PTSGKILLDGHDLKSLQLKWLREQMGLVS  458 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~~~~~~~~~~~~~i~~v~  458 (1253)
                      .++|+|+.|+|||||+..|+..-.  ...|++. +|..+.+..+++..+++++-.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~   57 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRT   57 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEE
T ss_conf             999994889809999999999709755306622-221135626988873876875

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.20  E-value=0.022  Score=31.24  Aligned_cols=36  Identities=31%  Similarity=0.248  Sum_probs=26.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCC
Q ss_conf             689998499996889999984237898---418999995
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYDPI---SGTVLIDGY 1070 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~p~---~G~I~idG~ 1070 (1253)
                      +.++|+|++|||||||+.-|.+.+...   -|.|.-|+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~   40 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   40 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             099998099998999999999999867983799983167

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.19  E-value=0.062  Score=27.60  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9689998499996889999984237
Q 000851         1034 GRSLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1034 Ge~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      +=++||+|++|+|||||++.|+|-.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             8889999999999999999997787

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.034  Score=29.75  Aligned_cols=45  Identities=20%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCC
Q ss_conf             89998499996889999984237898418999995179999787723328880678765
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 1094 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF 1094 (1253)
                      .|||.|++||||||+.+.|...+.....       +       .-...+.++++|.+..
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~~~-------~-------~~~~~~~vi~~D~yy~   48 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQNEV-------D-------YRQKQVVILSQDSFYR   48 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGGGS-------C-------GGGCSEEEEEGGGGBC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCHHCC-------C-------CCCCCEEEEECCCCCC
T ss_conf             9999899978799999999999641013-------4-------5788439993465322

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.16  E-value=0.026  Score=30.73  Aligned_cols=30  Identities=17%  Similarity=0.195  Sum_probs=23.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             999999858999389999999715889975
Q 000851          404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSG  433 (1253)
Q Consensus       404 g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G  433 (1253)
                      .++++|.|++||||||+++.|...+.....
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~   30 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGV   30 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             988999899998989999999999987699

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=93.12  E-value=0.031  Score=30.07  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=25.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             689998499996889999984237898418999995
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGY 1070 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~ 1070 (1253)
                      ..+.|+|++||||||+++.|.+-+.   +...++|-
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d   35 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGD   35 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEHH
T ss_conf             0899989999998999999999809---98898307

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.09  E-value=0.027  Score=30.58  Aligned_cols=31  Identities=23%  Similarity=0.277  Sum_probs=25.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf             9689998499996889999984237898418
Q 000851         1034 GRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064 (1253)
Q Consensus      1034 Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~ 1064 (1253)
                      .+.|+|.|+.||||||+++.|...+......
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~   31 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN   31 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             9889998999989899999999999876998

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.08  E-value=0.043  Score=28.95  Aligned_cols=27  Identities=26%  Similarity=0.530  Sum_probs=23.0

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             389999998589993899999997158
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      |+|-.+.|+||.||||||+.+.|+..|
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             996389998999998899999999986

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=93.00  E-value=0.029  Score=30.26  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+.|+|++||||||+++.|+..+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             79898999999899999999997

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.018  Score=32.06  Aligned_cols=27  Identities=30%  Similarity=0.438  Sum_probs=24.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             896899984999968899999842378
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      +|..|.|+|++||||||+++.|...+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             996999889999999999999999997

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.032  Score=29.95  Aligned_cols=24  Identities=38%  Similarity=0.585  Sum_probs=20.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             999998589993899999997158
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +.+.++||+||||||+.+.|+..+
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             749998999999999999999996

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.90  E-value=0.045  Score=28.76  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=27.1

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             4896899984999968899999842378984189999
Q 000851         1032 SAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 1068 (1253)
Q Consensus      1032 ~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~id 1068 (1253)
                      |+|-++.|+||.||||||..+.|..-|    |-..++
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~   33 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA   33 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf             996389998999998899999999986----985775

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.75  E-value=0.036  Score=29.53  Aligned_cols=23  Identities=39%  Similarity=0.689  Sum_probs=16.5

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             99985899938999999971588
Q 000851          407 FAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       407 ~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      +.|+|||||||+||++.|...++
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
T ss_conf             99989999998999999997488

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.65  E-value=0.037  Score=29.41  Aligned_cols=22  Identities=41%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .++++|++|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999998899999999689

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.63  E-value=0.04  Score=29.19  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=19.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89999998589993899999997158
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +...+.|+||+||||||+.+.|+..|
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99489998999998899999999997

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=92.61  E-value=0.037  Score=29.44  Aligned_cols=25  Identities=32%  Similarity=0.501  Sum_probs=21.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             6899984999968899999842378
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      +.|.|+|++||||||+.+.|..-+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             7499989999999999999999969

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=92.59  E-value=0.041  Score=29.05  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      ++.|+|++||||||+++.|..-+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             798989999998999999999979

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.49  E-value=0.041  Score=29.11  Aligned_cols=44  Identities=27%  Similarity=0.594  Sum_probs=29.8

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCC-------------CCCCEEEECCCCCCCCCHHHHHC
Q ss_conf             99984999968899999842378-------------98418999995179999787723
Q 000851         1037 LAVVGQSGSGKSTVISLVMRFYD-------------PISGTVLIDGYDIRTLNLRSLRR 1082 (1253)
Q Consensus      1037 iaIvG~SGSGKSTL~~lL~gl~~-------------p~~G~I~idG~di~~i~~~~lR~ 1082 (1253)
                      |.|+|||||||+||++.|+.-++             |..|+  .+|+|..-++.+...+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~   60 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKS   60 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHHH
T ss_conf             99989999998999999997488662477764268999997--5784324324889999

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.45  E-value=0.047  Score=28.63  Aligned_cols=32  Identities=31%  Similarity=0.448  Sum_probs=25.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             896899984999968899999842378984189999
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 1068 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~id 1068 (1253)
                      +...|.|+||.||||||+++.|..-|    |-+.++
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~   36 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS   36 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf             99489998999998899999999997----992672

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.43  E-value=0.05  Score=28.40  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +++++|++|+|||||++.|.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999998999999996777

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.41  E-value=0.21  Score=23.31  Aligned_cols=44  Identities=25%  Similarity=0.383  Sum_probs=30.1

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf             998889837688889998999999999870897399981492354
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV  576 (1253)
Q Consensus       532 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~  576 (1253)
                      +.+++++||.- .+.......+...+........++++++....+
T Consensus        99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i  142 (227)
T d1sxjc2          99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL  142 (227)
T ss_dssp             SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred             CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf             71899996632-000237899998863112002320126708775

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.29  E-value=0.052  Score=28.26  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +++++|++|+|||||++.+.|.-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999999999999996888

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=92.19  E-value=0.065  Score=27.43  Aligned_cols=24  Identities=42%  Similarity=0.672  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899938999999971588
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      .++++|+.|||||||++.|++...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899991899839999999999884

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.17  E-value=0.039  Score=29.30  Aligned_cols=22  Identities=36%  Similarity=0.604  Sum_probs=16.5

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998589993899999997158
Q 000851          407 FAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       407 ~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +.|+|||||||+||++.|...+
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
T ss_conf             9999999999999999999748

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.15  E-value=0.035  Score=29.68  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=14.2

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999858999389999999715
Q 000851          407 FAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       407 ~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      +||+|++++|||||++.|.|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999899998799999999689

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.04  Score=29.19  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=23.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899999985899938999999971588
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      ++++++|-|+.||||||++++|...++
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             998899987888779999999999973

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.055  Score=28.04  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=14.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .++++|++|+|||||++.|.|.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999899999899999999688

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=92.01  E-value=0.069  Score=27.25  Aligned_cols=24  Identities=33%  Similarity=0.581  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      .++|+|+.|||||||++-|++...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899991899839999999999884

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=92.00  E-value=0.054  Score=28.11  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89998499996889999984237
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      +|+|+|++|+|||||++.|.|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99998999987999999852987

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.82  E-value=0.055  Score=28.05  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=16.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9999998589993899999997158
Q 000851          404 GKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       404 g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      -..+.|+||+||||||+++.|+.-|
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             7289998999999899999999985

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.80  E-value=0.052  Score=28.25  Aligned_cols=117  Identities=19%  Similarity=0.223  Sum_probs=60.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCCHH
Q ss_conf             89689998499996889999984237898418999995179999787723328880678765213888850299887999
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEI 1112 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreNL~~g~~~~s~~ 1112 (1253)
                      +-..+.|+||.||||||+++.|..-|    |-+.|+.-       +-+|+.   +.+...-....+++-..-+. ...+.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~---~~~~~~~~~~~i~~~~~~~~-~~~~~   71 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAE---QGRAGSQYGELIKNCIKEGQ-IVPQE   71 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHH---HHSTTCSCHHHHHHHHHTTC-CCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHH---HHHCCCHHHHHHHHHHHCCC-CCCCH
T ss_conf             97289998999999899999999985----99088535-------899988---62010178899887640000-23203


Q ss_pred             HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             99999999009899972878765422599998892499999999986059987897266
Q 000851         1113 ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171 (1253)
Q Consensus      1113 ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILILDEp 1171 (1253)
                      .+.......-......    .-+..+-+   .+-....|...+.+.+.....++.||=|
T Consensus        72 ~~~~~~~~~~~~~~~~----~~~~~vl~---g~p~~~~q~~~~~~~~~~~~~~i~l~~~  123 (196)
T d1ukza_          72 ITLALLRNAISDNVKA----NKHKFLID---GFPRKMDQAISFERDIVESKFILFFDCP  123 (196)
T ss_dssp             HHHHHHHHHHHHHHHT----TCCEEEEE---TCCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred             HHHHHHHHHHHHHHCC----CCCCEEEE---CCCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             6789999998864003----77753540---4313689999999861545543125798

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.80  E-value=0.058  Score=27.88  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      +++|+|++||||||+++.|..
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999989887789999999998

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.092  Score=26.21  Aligned_cols=29  Identities=17%  Similarity=0.316  Sum_probs=25.1

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88389999998589993899999997158
Q 000851          400 SVDAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       400 ~i~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      -+++|+.+.|.||+|||||||+.-++...
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             98599799999589999999999999999

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.76  E-value=0.063  Score=27.54  Aligned_cols=24  Identities=33%  Similarity=0.621  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899938999999971588
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      .++|-||+||||||.+++|+..|.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             999789998798999999999969

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.064  Score=27.52  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      +++++|.+|+|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999979999899999999589

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.56  E-value=0.039  Score=29.28  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=16.3

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999858999389999999715
Q 000851          407 FAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       407 ~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      ++|+|.+++|||||++.|.|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999899999899999999689

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.56  E-value=0.047  Score=28.63  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=19.8

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             99984999968899999842378
Q 000851         1037 LAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1037 iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      |.|+|||||||+||++.|...++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
T ss_conf             99999999999999999997488

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.50  E-value=0.066  Score=27.40  Aligned_cols=22  Identities=23%  Similarity=0.608  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .++|+|++|+|||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999998899999999679

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=91.36  E-value=0.065  Score=27.43  Aligned_cols=23  Identities=35%  Similarity=0.548  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+.|+|++||||||+.+.|+..+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
T ss_conf             39998999998899999999983

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.35  E-value=0.071  Score=27.12  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             9999985899938999999971588
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      ..++++|.+||||||+++.|...+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             8999989999999999999999997

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.34  E-value=0.04  Score=29.15  Aligned_cols=28  Identities=32%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             8389999998589993899999997158
Q 000851          401 VDAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       401 i~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +..+.++.|.||+||||||+.+.|+..|
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             4678289998999998799999999986

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=91.24  E-value=0.068  Score=27.28  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=17.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             999998589993899999997158
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +.+.++|++||||||+.+.|+..+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             988998899998899999999994

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.16  E-value=0.11  Score=25.65  Aligned_cols=42  Identities=10%  Similarity=0.286  Sum_probs=21.2

Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf             2499888983768888999899999999987089739998149235
Q 000851          530 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLST  575 (1253)
Q Consensus       530 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~  575 (1253)
                      ..+.+++|+|-.. .+. +.+..+.+.+++.  ++-+++|-...+.
T Consensus       133 ~~~~d~~l~~~~~-~~~-~~d~~l~~~l~~~--~k~~~~V~nK~D~  174 (400)
T d1tq4a_         133 FYEYDFFIIISAT-RFK-KNDIDIAKAISMM--KKEFYFVRTKVDS  174 (400)
T ss_dssp             GGGCSEEEEEESS-CCC-HHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred             HHCCEEEEEECCC-CCC-HHHHHHHHHHHHC--CCCEEEEEECCCC
T ss_conf             3226599996588-887-8899999999976--9987999708632

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=91.09  E-value=0.07  Score=27.18  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             6899984999968899999842378
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      +.+.++|++||||||+.+.|..-+.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9889988999988999999999949

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.12  Score=25.29  Aligned_cols=29  Identities=14%  Similarity=0.255  Sum_probs=25.0

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             77489689998499996889999984237
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1030 ~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      -+++|+.+-|.|++||||||++.-++.-.
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             98599799999589999999999999999

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.06  E-value=0.079  Score=26.74  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      +++|+|++||||||+++.+..
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999888887889999999998

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.092  Score=26.23  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=23.8

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             3899999985899938999999971588
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      ++|.+++|-|+-||||||++++|...+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9805999989988899999999999998

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.01  E-value=0.075  Score=26.92  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=26.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             999999858999389999999715889975899999
Q 000851          404 GKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG  439 (1253)
Q Consensus       404 g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g  439 (1253)
                      .+.+.+.||+||||||+++.|++.+...  -+.+++
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~~~--~~~i~~   65 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQGN--VIVIDN   65 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTTC--CEEECT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCC--EEEEEC
T ss_conf             9799988979988999999999986515--489832

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.00  E-value=0.083  Score=26.59  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89998499996889999984237
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      +++|+|++|+|||||+|.|+|-.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89998999986999999985898

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.99  E-value=0.18  Score=23.73  Aligned_cols=21  Identities=29%  Similarity=0.514  Sum_probs=16.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|.+|+|||||++-+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899798999999970

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.96  E-value=0.089  Score=26.31  Aligned_cols=25  Identities=32%  Similarity=0.503  Sum_probs=22.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             8999849999688999998423789
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDP 1060 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p 1060 (1253)
                      +|+|-||+||||||.+++|..-|.-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~   29 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGF   29 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             9997899987989999999999699

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=90.96  E-value=0.3  Score=22.03  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=21.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             9999985899938999999971588
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      .-+.+.||+|+|||++++.+.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             6488766898883599999998739

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.93  E-value=0.076  Score=26.91  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=18.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             999998589993899999997158
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      -+++|-|+.||||||+++.|....
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             199988999988899999999870

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=90.80  E-value=0.13  Score=24.93  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=23.0

Q ss_pred             CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             4112028883899999985899938999999971
Q 000851          393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       393 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++.-.+.+ .|.-+.+.|+||+||||++..+..
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             178999999-999999981899998999999998

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=90.71  E-value=0.31  Score=21.86  Aligned_cols=30  Identities=20%  Similarity=0.407  Sum_probs=19.3

Q ss_pred             EEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             888389999998589993899999997158
Q 000851          399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       399 l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +.-.+...+++|||+|+||||.+--|+..+
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             799999899998999998899999999999

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.054  Score=28.09  Aligned_cols=27  Identities=19%  Similarity=0.463  Sum_probs=24.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             896899984999968899999842378
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      +++.|+|-|+.||||||++++|...++
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             998899987888779999999999973

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.66  E-value=0.065  Score=27.43  Aligned_cols=25  Identities=24%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9999998589993899999997158
Q 000851          404 GKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       404 g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .-+++++|++|+|||||++-+.+-.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             7789999999989899999996788

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=90.60  E-value=0.083  Score=26.60  Aligned_cols=29  Identities=31%  Similarity=0.501  Sum_probs=23.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             899984999968899999842378984189999
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 1068 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~id 1068 (1253)
                      .+.|+|++||||||+.+.|...+    |--++|
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d   30 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD   30 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf             39998999998899999999983----998783

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.59  E-value=0.091  Score=26.26  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8999849999688999998423
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      +|+|+|++|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999998899999999689

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=90.58  E-value=0.091  Score=26.25  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=15.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .++++|.+|+|||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999998999999999679

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.58  E-value=0.091  Score=26.25  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +++++|++|+|||||++.+.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999999999999995899

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.58  E-value=0.1  Score=25.93  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=16.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+.|.||+||||||.++.|+..|
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99997999999899999999986

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=90.57  E-value=0.091  Score=26.24  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      ++.++|++|+|||||++-+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999998989999999659

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.55  E-value=0.12  Score=25.39  Aligned_cols=46  Identities=26%  Similarity=0.525  Sum_probs=36.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCC
Q ss_conf             999998589993899999997158899758999996179988888740037880467
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEP  461 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~  461 (1253)
                      +-+.++||+|||||-|++.|+++.+..  -+.+|...+.         ..|||..|.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV   95 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV   95 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEE---------ECCEEECCH
T ss_conf             647998999988999999999873898--8986255114---------111110444

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.52  E-value=0.07  Score=27.19  Aligned_cols=118  Identities=19%  Similarity=0.224  Sum_probs=66.1

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf             74896899984999968899999842378984189999951799997877233288806787652138888502998879
Q 000851         1031 VSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDAS 1110 (1253)
Q Consensus      1031 I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreNL~~g~~~~s 1110 (1253)
                      ++.+..+.|.||.||||||+++.|..-|    |-..|+.-+       -+|+.+   ...+ .....+.+.+.-+ ...+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~~-~~~~~~~~~~~~~-~~~~   68 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSGS-ARGKMLSEIMEKG-QLVP   68 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHTC-HHHHHHHHHHTTT-CCCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHH---HHHH-HHHHHHHHHHHHC-CCCC
T ss_conf             4678289998999998799999999986----984683347-------899999---8767-6514567777631-3776


Q ss_pred             HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99999999990098999728787654225999988924999999999860599878972666
Q 000851         1111 EIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEAT 1172 (1253)
Q Consensus      1111 ~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILILDEpT 1172 (1253)
                      ++.+...++.     .+...+...+..+-+   .+..-..|--.+.+.+.....++.+|.+.
T Consensus        69 ~~~~~~~~~~-----~l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~~  122 (194)
T d3adka_          69 LETVLDMLRD-----AMVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAGP  122 (194)
T ss_dssp             HHHHHHHHHH-----HHHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECCH
T ss_pred             HHEEEEEHHH-----HHHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCCH
T ss_conf             2224410245-----664032235660243---11101578999999837752000033312

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.1  Score=25.82  Aligned_cols=116  Identities=17%  Similarity=0.176  Sum_probs=57.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf             89998499996889999984237898418999995179999787723328880678765213888850299887999999
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELM 1115 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreNL~~g~~~~s~~ei~ 1115 (1253)
                      ++.|+||.||||||.++.|..-|    |-..|+-       -+-+|..+   .+....+.-.+.+.+.-+. ..+|+.+.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~-~v~d~~~~   67 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGK-IVPVEITI   67 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTC-CCCHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCC-CCCCCHHH
T ss_conf             99997999999899999999986----9926768-------89999988---7620468999999970697-21134036


Q ss_pred             HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCEE-EEECC
Q ss_conf             99999009899972878765422599998892499999999986059--9878-97266
Q 000851         1116 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN--PSIL-LLDEA 1171 (1253)
Q Consensus      1116 ~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~--p~IL-ILDEp 1171 (1253)
                      ..+...-. ....... .-+..+.+ |...  .+.|...+.+.+-..  +.++ ++|-+
T Consensus        68 ~~~~~~~~-~~~~~~~-~~~~~~~~-g~pr--~~~~~~~l~~~~~~~~~~~~vi~l~~~  121 (194)
T d1teva_          68 SLLKREMD-QTMAANA-QKNKFLID-GFPR--NQDNLQGWNKTMDGKADVSFVLFFDCN  121 (194)
T ss_dssp             HHHHHHHH-HHHHHCT-TCCEEEEE-SCCC--SHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred             HHHHHHHC-CCCHHHH-CCCCEEEC-CCHH--HHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             78887641-2100011-24511101-1030--489999986442105543389962476

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.45  E-value=0.049  Score=28.44  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=10.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      +|+|+|++++|||||++.|.+
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             899988999989999999858

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.42  E-value=0.11  Score=25.63  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89998499996889999984237
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      +|+++|++|+|||||++.|+|-.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999998999999996777

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.42  E-value=0.11  Score=25.66  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+.|+||+||||||+.+.|+..|
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998899999899999999987

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.40  E-value=0.1  Score=25.91  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=25.8

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf             489689998499996889999984237898418
Q 000851         1032 SAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064 (1253)
Q Consensus      1032 ~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~ 1064 (1253)
                      .++-.+.+.||+||||||.+..++...+....+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~  188 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN  188 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred             HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf             410548987678777447799986662578746

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=90.38  E-value=0.093  Score=26.17  Aligned_cols=22  Identities=41%  Similarity=0.676  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8999849999688999998423
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      .+||+|.+||||||+++.|..+
T Consensus         5 IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999898877899999999987

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.36  E-value=0.081  Score=26.67  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=17.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+.|.||+||||||+++.|..-|
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998899999899999999987

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.32  E-value=0.092  Score=26.23  Aligned_cols=111  Identities=18%  Similarity=0.223  Sum_probs=51.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH-HCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf             899984999968899999842378984189999951799997877-2332888067876521388885029988799999
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-RRKIGLVQQEPALFSTTIYENIKYGNEDASEIEL 1114 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~l-R~~i~~v~Qd~~LF~gTIreNL~~g~~~~s~~ei 1114 (1253)
                      ++.|.||.||||||+++.|..-|.    -..++        ..++ |..+    +...-....+.+.+..+.. ..++..
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~----~~~is--------~~~~~~~~~----~~~~~~~~~~~~~~~~g~~-~~~~~~   67 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQ----LAHIS--------AGDLLRAEI----AAGSENGKRAKEFMEKGQL-VPDEIV   67 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHC----CEECC--------HHHHHHHHH----HHTCHHHHHHHHHHHTTCC-CCHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC----CCEEE--------HHHHHHHHH----HCCCHHHHHHHHHHHCCCC-CCCEEE
T ss_conf             999988999998999999999879----91785--------007888764----1133789999999866885-432121


Q ss_pred             HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             999999009899972878765422599998892499999999986059987897266
Q 000851         1115 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171 (1253)
Q Consensus      1115 ~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILILDEp 1171 (1253)
                      .......-......  .+|+  .+..    +..-..|...+.+...+...+++||-+
T Consensus        68 ~~~~~~~~~~~~~~--~~~~--vid~----~~~~~~q~~~l~~~~~~p~~~i~L~~~  116 (189)
T d1zaka1          68 VNMVKERLRQPDAQ--ENGW--LLDG----YPRSYSQAMALETLEIRPDTFILLDVP  116 (189)
T ss_dssp             HHHHHHHHHSHHHH--HTCE--EEES----CCCSHHHHHHHHTTTCCCSEEEEEECC
T ss_pred             HHHHHHHHHHCCCC--CCCE--EEEC----CCHHHHHHHHHHHCCCCCCHHEEECHH
T ss_conf             03566676530144--6737--9606----212467775443013451121011100

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.30  E-value=0.1  Score=25.79  Aligned_cols=44  Identities=27%  Similarity=0.247  Sum_probs=32.4

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCCCCC
Q ss_conf             748968999849999688999998423789--84189999951799
Q 000851         1031 VSAGRSLAVVGQSGSGKSTVISLVMRFYDP--ISGTVLIDGYDIRT 1074 (1253)
Q Consensus      1031 I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p--~~G~I~idG~di~~ 1074 (1253)
                      =++|..+.+.|.|||||||+++.|..-+..  ..-.+.+||-.+++
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~   66 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF   66 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf             8998699998999999899999999887774275089975367887

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.23  E-value=0.12  Score=25.40  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89998499996889999984237
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      +|+++|++|+|||||++.|+|-.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999999999999996888

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=90.17  E-value=0.055  Score=28.06  Aligned_cols=28  Identities=25%  Similarity=0.353  Sum_probs=23.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             9999998589993899999997158899
Q 000851          404 GKTFAFVGPSGSGKSTIISMVQRLYEPT  431 (1253)
Q Consensus       404 g~~~~ivG~sGsGKSTl~~ll~g~~~~~  431 (1253)
                      .-.++|+|+.|+|||||++-+.+.+...
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             3289743899998999999999999756

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.17  E-value=0.13  Score=25.04  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899999985899938999999971588
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      +|+++++-|+.||||||+++.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             987899989988879999999999999

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.14  E-value=0.18  Score=23.78  Aligned_cols=29  Identities=24%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             38999999858999389999999715889
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQRLYEP  430 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g~~~~  430 (1253)
                      .+|.++++-|+-||||||++++|......
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             97689999899888699999999999971

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.13  E-value=0.11  Score=25.53  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8999849999688999998423
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      +|+|+|++|+|||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999998899999999679

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.09  E-value=0.11  Score=25.53  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      .+.++|.+||||||+++.|.+.+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999989999999999999999997

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.03  E-value=0.13  Score=24.87  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=25.4

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             48968999849999688999998423789
Q 000851         1032 SAGRSLAVVGQSGSGKSTVISLVMRFYDP 1060 (1253)
Q Consensus      1032 ~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p 1060 (1253)
                      ++|..|+|.|+-||||||++++|...+..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             98059999899888999999999999987

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.03  E-value=0.088  Score=26.37  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=22.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             6899984999968899999842378
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      -.|+|-|..||||||++++|...+.
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             1999889999888999999998707

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.03  E-value=0.12  Score=25.40  Aligned_cols=24  Identities=29%  Similarity=0.552  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      ++.|+|+.||||||+++.|..-|.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899988999998999999999879

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=90.01  E-value=0.12  Score=25.21  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+.|+||.||||||+++.|+.-|
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998899998799999999987

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.00  E-value=0.08  Score=26.73  Aligned_cols=22  Identities=36%  Similarity=0.457  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      +++|.|+.|||||||...|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             9983799878899999999999

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.96  E-value=0.36  Score=21.39  Aligned_cols=44  Identities=11%  Similarity=0.168  Sum_probs=27.4

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf             998889837688889998999999999870897399981492354
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTV  576 (1253)
Q Consensus       532 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~  576 (1253)
                      +.+++|+||+-. +...+...+.+.+.+-.++...|++|++.+.+
T Consensus       108 ~~kviIide~d~-l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l  151 (207)
T d1a5ta2         108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPERL  151 (207)
T ss_dssp             SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred             CCCEEEECHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             640477313442-00001499999998501111045530686551

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=89.92  E-value=0.12  Score=25.34  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      .+||+|..||||||+++.|..
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999888887889999999998

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=89.81  E-value=0.12  Score=25.23  Aligned_cols=21  Identities=19%  Similarity=0.457  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999858999389999999715
Q 000851          407 FAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       407 ~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      +||+|+..+|||||++.|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCHHHHHHHHHHH
T ss_conf             999907787099999999974

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=89.70  E-value=0.17  Score=24.05  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .++++|++|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99999999989999999980899

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=89.67  E-value=0.13  Score=24.90  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899938999999971588
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      +++|.||+||||||+.+.|..-|.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899779998898999999999969

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.66  E-value=0.16  Score=24.30  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=23.3

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             883899999985899938999999971
Q 000851          400 SVDAGKTFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       400 ~i~~g~~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      -+++|+.+.|.|++||||||++.-++-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             986996999983899988999999999

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.66  E-value=0.057  Score=27.95  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             9999985899938999999971588
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      =+++|.|+|||||||+.+.+...+.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             8999989997809999999999971

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=89.59  E-value=0.13  Score=24.95  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=21.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      +|.|+|+.||||||+++.|..-|.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899988999987999999999879

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.59  E-value=0.15  Score=24.40  Aligned_cols=31  Identities=19%  Similarity=0.418  Sum_probs=26.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf             89689998499996889999984237898418
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 1064 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~ 1064 (1253)
                      +|..|+|-|..||||||++++|...+.. .|.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~   32 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK   32 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf             7689999899888699999999999971-977

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=89.58  E-value=0.13  Score=24.86  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=22.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             8999849999688999998423789
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDP 1060 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p 1060 (1253)
                      .|+|-||.||||||+.+.|..-|.-
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl   29 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQW   29 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             8997799988989999999999699

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=89.58  E-value=0.15  Score=24.49  Aligned_cols=27  Identities=22%  Similarity=0.466  Sum_probs=24.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             896899984999968899999842378
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      +|..|+|-|+-||||||+++.|...++
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             987899989988879999999999999

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.58  E-value=0.0052  Score=36.43  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=28.8

Q ss_pred             CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             411202888389999998589993899999997158
Q 000851          393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       393 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+++.++.+.+| ++.|+|+|||||||++.+|.-..
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             870279974998-08998899998799999999996

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=89.57  E-value=0.079  Score=26.74  Aligned_cols=27  Identities=30%  Similarity=0.343  Sum_probs=19.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             968999849999688999998423789
Q 000851         1034 GRSLAVVGQSGSGKSTVISLVMRFYDP 1060 (1253)
Q Consensus      1034 Ge~iaIvG~SGSGKSTL~~lL~gl~~p 1060 (1253)
                      .-++||+|+-|||||||++-|.+.+..
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             328974389999899999999999975

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.57  E-value=0.24  Score=22.80  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=16.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899298999999971

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.55  E-value=0.12  Score=25.13  Aligned_cols=22  Identities=41%  Similarity=0.484  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998589993899999997158
Q 000851          407 FAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       407 ~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +.++|++||||||+.+.|...+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             8998899998899999999984

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=89.54  E-value=0.09  Score=26.31  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             9999985899938999999971588
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      +++.|.|++||||||+++.|...+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             1999989899898999999999998

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=89.46  E-value=0.14  Score=24.79  Aligned_cols=30  Identities=33%  Similarity=0.574  Sum_probs=21.6

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             389999998589993899999997158899
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQRLYEPT  431 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~  431 (1253)
                      +++..++++||+|+||||.+--|+..+...
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~   33 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNL   33 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             997799998999998899999999999977

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.46  E-value=0.1  Score=25.74  Aligned_cols=24  Identities=33%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      ++.++|++||||||+.++|..-+.
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             489988999988999999999849

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.29  E-value=0.13  Score=24.99  Aligned_cols=35  Identities=26%  Similarity=0.496  Sum_probs=25.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             8999999858999389999999715889975899999
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG  439 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g  439 (1253)
                      |+.-+.++||+|||||.|++.+++.....  -+.+++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~--~~~i~~   82 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAP--FIKVEA   82 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCC--EEEEEG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCCC--HHCCCC
T ss_conf             98669998999988889999986213221--000344

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=89.18  E-value=0.23  Score=22.88  Aligned_cols=33  Identities=21%  Similarity=0.170  Sum_probs=22.5

Q ss_pred             CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             4112028883899999985899938999999971
Q 000851          393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       393 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++.-.+ --.|.-+.+.|+||+||||++..+..
T Consensus         4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_           4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             2899999-99999999980899998999999998

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.14  E-value=0.15  Score=24.39  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8999849999688999998423
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      .|+|+|.+|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999979999899999999589

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=89.08  E-value=0.16  Score=24.28  Aligned_cols=42  Identities=33%  Similarity=0.517  Sum_probs=27.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf             896899984999968899999842378984189999951799
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT 1074 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~ 1074 (1253)
                      ++..+++|||+|+||||.+-=|...+.-..-+|.+=..|...
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   46 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR   46 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             977999989999988999999999999779907999813666

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=89.07  E-value=0.13  Score=24.85  Aligned_cols=28  Identities=21%  Similarity=0.440  Sum_probs=23.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             9999858999389999999715889975
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYEPTSG  433 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~~~~G  433 (1253)
                      .+.+.||+|+||||++++++..+....+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             4898799997388999999850388853

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.02  E-value=0.086  Score=26.44  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8999849999688999998423
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      .|||+|++++|||||++.|.|-
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             6999899998799999999689

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.92  E-value=0.17  Score=24.00  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999698999999970

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.90  E-value=0.15  Score=24.37  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             99999858999389999999715
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      +.++|+|+.|+|||||++.+.+-
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
T ss_conf             98999999998989999999809

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=88.80  E-value=0.16  Score=24.33  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=16.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+.++||.||||||..+.|...+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998799999899999999986

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=88.76  E-value=0.092  Score=26.23  Aligned_cols=25  Identities=40%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             8999849999688999998423789
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDP 1060 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p 1060 (1253)
                      .+.|.|++||||||+++.|...+.-
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             9999898998989999999999987

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.72  E-value=0.18  Score=23.86  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=21.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             9999858999389999999715889
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYEP  430 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~~  430 (1253)
                      .+.+.||+|+||||++++++..+..
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~~   78 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELGY   78 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             4999879999888999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=0.43  Score=20.70  Aligned_cols=29  Identities=31%  Similarity=0.516  Sum_probs=22.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf             899984999968899999842-----37898418
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR-----FYDPISGT 1064 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g-----l~~p~~G~ 1064 (1253)
                      |++++|.+|+|||||++-+.+     -|.|+.|.
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~   37 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED   37 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf             8999998997989999999709998763761331

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=88.66  E-value=0.16  Score=24.29  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      ++.|+|+.||||||..+.|..-|.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899987999998999999999869

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=88.63  E-value=0.17  Score=24.12  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      +++|+|..||||||+++.+..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999789886889999999998

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.15  Score=24.40  Aligned_cols=77  Identities=9%  Similarity=0.073  Sum_probs=40.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEECCCCHHHHCCCEEEEEECCEEEE
Q ss_conf             92499999999986059987897266689996989999-999998728964999815911555048899995978988
Q 000851         1146 SGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI-QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAE 1222 (1253)
Q Consensus      1146 SGGQrQRlaLARALlr~p~ILILDEpTSaLD~~te~~I-~~~l~~~~~~~TvI~IsHrl~~i~~aD~I~vl~~G~ive 1222 (1253)
                      ...+......+...++++++++++=.-..-+...+... .+.++....++.+|++....+........--...-.+.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~  141 (161)
T d2gj8a1          64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIR  141 (161)
T ss_dssp             SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             520247899999998741332011025654203455544455542014101020465444335588798727996799

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.42  E-value=0.18  Score=23.75  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=11.8

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998589993899999997158
Q 000851          407 FAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       407 ~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +.|.||+||||||+.+.|..-|
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9998899999799999999998

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.20  E-value=0.24  Score=22.81  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=23.9

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             774896899984999968899999842
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1030 ~I~~Ge~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      -+++|+.+-|.|++||||||++.-++-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             986996999983899988999999999

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.18  E-value=0.21  Score=23.35  Aligned_cols=26  Identities=19%  Similarity=0.373  Sum_probs=22.8

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             88389999998589993899999997
Q 000851          400 SVDAGKTFAFVGPSGSGKSTIISMVQ  425 (1253)
Q Consensus       400 ~i~~g~~~~ivG~sGsGKSTl~~ll~  425 (1253)
                      -+++|+.+.|.|++||||||+..-++
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             95588799998589898899999999

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=88.11  E-value=0.19  Score=23.63  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8999849999688999998423
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      |+.++|++|+|||||++-+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999998989999999659

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=88.01  E-value=0.18  Score=23.83  Aligned_cols=37  Identities=11%  Similarity=0.381  Sum_probs=23.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf             968999849999688999998423789841899999517
Q 000851         1034 GRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI 1072 (1253)
Q Consensus      1034 Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di 1072 (1253)
                      +..+.++||+|+|||.|++.|++.+..  --+.+|+-++
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~   85 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF   85 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCCCC
T ss_conf             866999899998888999998621322--1000344330

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=88.00  E-value=0.16  Score=24.22  Aligned_cols=34  Identities=18%  Similarity=0.358  Sum_probs=29.1

Q ss_pred             CCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             2028883899999985899938999999971588
Q 000851          396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       396 ~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      |.=+.+.+|+..+|.|++|+|||||+.-+.+-..
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             4125645787556867999887899999999775

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.93  E-value=0.043  Score=28.94  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=15.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .++++|++|+|||||++.|.|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999999999999999589

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.93  E-value=0.2  Score=23.38  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      ++.|.|+.||||||+.+.|..-|.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899988999997999999999989

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=87.85  E-value=0.2  Score=23.42  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8999849999688999998423
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      +++|||++|+|||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999998999999999679

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.84  E-value=0.21  Score=23.26  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89998499996889999984237
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      .+||.|+.|||||||...|....
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99837998788999999999999

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=87.82  E-value=0.28  Score=22.30  Aligned_cols=32  Identities=22%  Similarity=0.448  Sum_probs=24.7

Q ss_pred             CCCCCEE-EEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf             4112028-8838999999858999389999999
Q 000851          393 VFENLNF-SVDAGKTFAFVGPSGSGKSTIISMV  424 (1253)
Q Consensus       393 ~l~~i~l-~i~~g~~~~ivG~sGsGKSTl~~ll  424 (1253)
                      .|+++-- -+++|+.+.|.|++|+|||+|+.-+
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf             798855689969839999947999999999999

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=87.80  E-value=0.2  Score=23.50  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=17.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             99999858999389999999715
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      =.++++|.+|||||||++-+.+-
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHCC
T ss_conf             79999999998989999999668

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=87.78  E-value=0.3  Score=21.96  Aligned_cols=25  Identities=28%  Similarity=0.201  Sum_probs=15.7

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             8389999998589993899999997
Q 000851          401 VDAGKTFAFVGPSGSGKSTIISMVQ  425 (1253)
Q Consensus       401 i~~g~~~~ivG~sGsGKSTl~~ll~  425 (1253)
                      .-.|.-+.|.|+||+||||++..+.
T Consensus        12 ~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          12 DVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EECCEEEEEEECCCCCHHHHHHHHH
T ss_conf             9999999998089999999999999

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.39  Score=21.10  Aligned_cols=30  Identities=30%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf             999985899938999999971-----588997589
Q 000851          406 TFAFVGPSGSGKSTIISMVQR-----LYEPTSGKI  435 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g-----~~~~~~G~i  435 (1253)
                      .++++|.+|+|||||++-+.+     .|.|+.|..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~   41 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS   41 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             89999999979999999997399885457664520

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=87.74  E-value=0.49  Score=20.28  Aligned_cols=54  Identities=19%  Similarity=0.410  Sum_probs=37.4

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHCCCEE
Q ss_conf             8838999999858999389999999715889975-89999961799888887400378
Q 000851          400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-KILLDGHDLKSLQLKWLREQMGL  456 (1253)
Q Consensus       400 ~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G-~i~i~g~~~~~~~~~~~~~~i~~  456 (1253)
                      -++.|.++-+.||+||||||++..++.......| -+++|...  .++++.. +++|+
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~a-~~~Gv  107 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVYA-RALGV  107 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHHH-HHTTC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHH-HHHCC
T ss_conf             8667547898058765227999999999970799899998876--5899999-98289

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=87.72  E-value=0.19  Score=23.68  Aligned_cols=23  Identities=35%  Similarity=0.611  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .++|+||.||||||+.+.|+.-|
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             69998899998799999999997

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=87.67  E-value=0.3  Score=21.98  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=27.0

Q ss_pred             CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             54112038774896899984999968899999842
Q 000851         1022 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1022 ~vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      ..+|.--+.+ .|.-+.|.|+||+||||++..|..
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             3178999999-999999981899998999999998

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=87.63  E-value=0.0094  Score=34.34  Aligned_cols=35  Identities=20%  Similarity=0.253  Sum_probs=27.5

Q ss_pred             CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             411203877489689998499996889999984237
Q 000851         1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1023 vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      .+++.++.+.+| .+.|+|+|||||||++.+|.-.+
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             870279974998-08998899998799999999996

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=87.63  E-value=0.21  Score=23.33  Aligned_cols=22  Identities=41%  Similarity=0.527  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8999849999688999998423
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      .+||+|..||||||..+.|..+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9997898868899999999987

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.61  E-value=0.087  Score=26.41  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      .|||.|.|||||||+.+.|...+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999989997809999999999971

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=87.51  E-value=0.29  Score=22.11  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89998499996889999984237
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      +++++|+.|+|||||++.|.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99999999989999999980899

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.50  E-value=0.21  Score=23.31  Aligned_cols=27  Identities=11%  Similarity=0.139  Sum_probs=24.1

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             883899999985899938999999971
Q 000851          400 SVDAGKTFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       400 ~i~~g~~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      -+++|+.+.|.|++|||||++..-++.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             976897999988998878899999999

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.48  E-value=0.23  Score=22.89  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             68999849999688999998423
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      +.|+|+|+.|+|||||++.|.+-
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
T ss_conf             98999999998989999999809

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.47  E-value=0.15  Score=24.40  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=22.5

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             489689998499996889999984237
Q 000851         1032 SAGRSLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1032 ~~Ge~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      ++.-+++|||++|+|||||++.|.+-.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             777789999999989899999996788

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.44  E-value=0.5  Score=20.15  Aligned_cols=37  Identities=27%  Similarity=0.557  Sum_probs=26.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCCC
Q ss_conf             6899984999968899999842-----37898418-----9999951
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMR-----FYDPISGT-----VLIDGYD 1071 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~g-----l~~p~~G~-----I~idG~d 1071 (1253)
                      -|++++|.+|+|||||++.+.+     -|.|+.|.     +.+||.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~   51 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE   51 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEE
T ss_conf             38999998992989999999719888544754211310388317679

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=87.33  E-value=0.25  Score=22.66  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=24.1

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             8389999998589993899999997158
Q 000851          401 VDAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       401 i~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +++|+++.|.|++|+||||++.-++--.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             6288599999179999899999999999

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.29  E-value=0.23  Score=22.99  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89998499996889999984237
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      |++++|++|+|||||++.|.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999999999999995899

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.29  E-value=0.51  Score=20.08  Aligned_cols=44  Identities=18%  Similarity=0.176  Sum_probs=32.3

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf             988898376888899989999999998708973999814923544
Q 000851          533 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR  577 (1253)
Q Consensus       533 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~  577 (1253)
                      .+++|+||+-. |+......+.+.+.+...+...|++|++.+-+.
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~  159 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  159 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred             CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf             87999978110-899999999999856898869999738856367

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.29  E-value=0.12  Score=25.27  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999849999688999998423
Q 000851         1037 LAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1037 iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      |||+|++++|||||++.|.|-
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999899999899999999689

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=87.19  E-value=0.23  Score=23.02  Aligned_cols=175  Identities=19%  Similarity=0.194  Sum_probs=87.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHH--CCCCCCCCH
Q ss_conf             899984999968899999842378--9841899999517999978772332888067876521388885--029988799
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD--PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENI--KYGNEDASE 1111 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~--p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreNL--~~g~~~~s~ 1111 (1253)
                      .+||+|+.|+|||||+..|+..-.  ...|++. +|....+..+++..+.+++-+.-..+-....+-|+  ++|..+.. 
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~-   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV-   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH-
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCHHHHH-
T ss_conf             999994889809999999999709755306622-221135626988873876875102222343210688068155433-


Q ss_pred             HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHH
Q ss_conf             999999999009899972878765422599998892499999999986059987897---26668999698999999999
Q 000851         1112 IELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLL---DEATSALDTASENLIQEALD 1188 (1253)
Q Consensus      1112 ~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILIL---DEpTSaLD~~te~~I~~~l~ 1188 (1253)
                      .++..+++.+...=          -.|+ .......+-++-+-.|+.. +-|.++++   |.+   -|..  +.+ +.++
T Consensus        82 ~e~~~al~~~D~av----------lvvd-a~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~---~~~~--~~l-~~~~  143 (267)
T d2dy1a2          82 GEIRGALEAADAAL----------VAVS-AEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG---GDYY--ALL-EDLR  143 (267)
T ss_dssp             HHHHHHHHHCSEEE----------EEEE-TTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC---CCHH--HHH-HHHH
T ss_pred             HHHHHHHCCCCCEE----------EEEE-CCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC---CCCH--HHH-HHHH
T ss_conf             55654312467338----------9842-3577421157887765540-44310133320222---2101--234-4688


Q ss_pred             HHCCCCEE-EEEC----CCCHHHHC--CCEEEEEECCEEEEECCHHHHHH
Q ss_conf             87289649-9981----59115550--48899995978988259568950
Q 000851         1189 KLMEGRTT-IMVA----HRLSTIRN--ADKIAVLQQGKVAEIGSHEQLLR 1231 (1253)
Q Consensus      1189 ~~~~~~Tv-I~Is----Hrl~~i~~--aD~I~vl~~G~ive~G~~~eLl~ 1231 (1253)
                      +.+ ++.+ +.+-    .....+-+  ..+.+..++|.-.+.--|.++.+
T Consensus       144 ~~l-g~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~  192 (267)
T d2dy1a2         144 STL-GPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE  192 (267)
T ss_dssp             HHH-CSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH
T ss_pred             HHH-CCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHH
T ss_conf             874-6586768600258832687624765489961898745407777899

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.15  E-value=0.22  Score=23.10  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999198999999973

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=87.00  E-value=0.33  Score=21.67  Aligned_cols=31  Identities=19%  Similarity=0.376  Sum_probs=25.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             8999999858999389999999715889975
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSG  433 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G  433 (1253)
                      +...+.|.||+|+||||+++.+...+....+
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             8881688898999899999999999754468

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=86.86  E-value=0.47  Score=20.37  Aligned_cols=29  Identities=34%  Similarity=0.518  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf             999985899938999999971-----58899758
Q 000851          406 TFAFVGPSGSGKSTIISMVQR-----LYEPTSGK  434 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g-----~~~~~~G~  434 (1253)
                      .+.++|.+|+|||||++-+..     .|.|+.|.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~   39 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD   39 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             9999998995889999999729998654775343

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.77  E-value=0.26  Score=22.46  Aligned_cols=23  Identities=30%  Similarity=0.651  Sum_probs=16.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+.+.||.||||||+.+.|+-.|
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998999999899999999996

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=86.67  E-value=0.23  Score=23.01  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89998499996889999984237
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      .+||+|+..+|||||++.|.+..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHC
T ss_conf             99999077870999999999743

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=86.56  E-value=0.23  Score=22.92  Aligned_cols=21  Identities=19%  Similarity=0.471  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999899999999964

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.56  E-value=0.31  Score=21.84  Aligned_cols=35  Identities=26%  Similarity=0.402  Sum_probs=27.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf             6899984999968899999842378984189999951
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 1071 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~d 1071 (1253)
                      .-+.+.||.|+||||+++.|++-+..  +-+.+++-+
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~d~   67 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDNDT   67 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECTHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEECHH
T ss_conf             79998897998899999999998651--548983289

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.43  Score=20.69  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=17.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999799999999984

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=86.54  E-value=0.51  Score=20.08  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .++|||...+|||||++.+.+-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             7999789999899999999778

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=86.52  E-value=0.3  Score=22.03  Aligned_cols=27  Identities=22%  Similarity=0.177  Sum_probs=22.6

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             389999998589993899999997158
Q 000851          402 DAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       402 ~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      ..+..+.|.||+|+|||||++-++...
T Consensus        27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          27 LRAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             059879998699982999999999977

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.51  E-value=0.42  Score=20.83  Aligned_cols=24  Identities=25%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899938999999971588
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      .+.++|.+|+|||||++-+.+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             999999899299999999972867

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.38  E-value=0.26  Score=22.47  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|.+|+|||||++-+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999198999999971

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=86.29  E-value=0.26  Score=22.54  Aligned_cols=43  Identities=21%  Similarity=0.303  Sum_probs=32.4

Q ss_pred             EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
Q ss_conf             88838999999858999389999999715889975-89999961
Q 000851          399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSG-KILLDGHD  441 (1253)
Q Consensus       399 l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G-~i~i~g~~  441 (1253)
                      =-+++|.++-+.||+||||||++.-++.......| -+++|...
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             99667358998057774789999999999870898799986544

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=86.20  E-value=0.38  Score=21.19  Aligned_cols=163  Identities=15%  Similarity=0.154  Sum_probs=74.0

Q ss_pred             CCCCCEEE-EEECCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHH
Q ss_conf             54112038-77489689998499996889999-98423789841899999517999978772332888067876521388
Q 000851         1022 TIFENLNL-KVSAGRSLAVVGQSGSGKSTVIS-LVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIY 1099 (1253)
Q Consensus      1022 ~vL~~isl-~I~~Ge~iaIvG~SGSGKSTL~~-lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIr 1099 (1253)
                      +-|+++-- -+++|+.+-|.|++|+|||+++. ++..........+.+...+   .+....                  +
T Consensus        13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e---~~~~~~------------------~   71 (242)
T d1tf7a1          13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE---ETPQDI------------------I   71 (242)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS---SCHHHH------------------H
T ss_pred             HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC---CCHHHH------------------H
T ss_conf             7798855689969839999947999999999999999998568874201266---799999------------------9


Q ss_pred             HHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHC--CCCCEEEEECCCCCCC
Q ss_conf             8850299887999999999990098999728787654225999988924999-999999860--5998789726668999
Q 000851         1100 ENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQ-RVAIARAIL--KNPSILLLDEATSALD 1176 (1253)
Q Consensus      1100 eNL~~g~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQ-RlaLARALl--r~p~ILILDEpTSaLD 1176 (1253)
                      ....-..  ...++...   .-       ....-......+.-..++..... .+.-.+..+  .+|+++++|--++-.+
T Consensus        72 ~~~~~~~--~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~  139 (242)
T d1tf7a1          72 KNARSFG--WDLAKLVD---EG-------KLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ  139 (242)
T ss_dssp             HHHGGGT--CCHHHHHH---TT-------SEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST
T ss_pred             HHHHHCC--CCHHHHHH---HC-------CHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999849--98489887---14-------302444210335444430245899999999998863122200207889987


Q ss_pred             H----HHHHHHHH-HHHHHC-CCCEEEEECCCCHH---------HH-CCCEEEEEEC
Q ss_conf             6----98999999-999872-89649998159115---------55-0488999959
Q 000851         1177 T----ASENLIQE-ALDKLM-EGRTTIMVAHRLST---------IR-NADKIAVLQQ 1217 (1253)
Q Consensus      1177 ~----~te~~I~~-~l~~~~-~~~TvI~IsHrl~~---------i~-~aD~I~vl~~ 1217 (1253)
                      .    ........ .++... .++|+++++|....         .. .+|.++.+..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~  196 (242)
T d1tf7a1         140 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  196 (242)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEEE
T ss_conf             605726789999999999986397168842102554222467623353629999887

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.20  E-value=0.55  Score=19.83  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899789999999973

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=86.17  E-value=0.18  Score=23.85  Aligned_cols=31  Identities=32%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             EEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             8883899999985899938999999971588
Q 000851          399 FSVDAGKTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       399 l~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      ++-.+-..+++|||+|+||||.+--|+..+.
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             7899997999989999998999999999999

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.17  E-value=0.25  Score=22.61  Aligned_cols=46  Identities=30%  Similarity=0.385  Sum_probs=28.3

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf             49988898376888899989999999998708973999814923544
Q 000851          531 RNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR  577 (1253)
Q Consensus       531 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~  577 (1253)
                      .++.++++||.- .+.......+...+.........|+++++.+.+.
T Consensus       108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~  153 (231)
T d1iqpa2         108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII  153 (231)
T ss_dssp             CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred             CCCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCH
T ss_conf             872288614344-3121478987641124776447886148766565

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.14  E-value=0.31  Score=21.90  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=24.4

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             774896899984999968899999842
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1030 ~I~~Ge~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      -|++|+.+-|.|++|+|||++..-++.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             976897999988998878899999999

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.08  E-value=0.26  Score=22.49  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .++++|...||||||++.|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             69997689897999999996898

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.08  E-value=0.3  Score=21.95  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999198999999961

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.06  E-value=0.35  Score=21.48  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=23.0

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             77489689998499996889999984
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVM 1055 (1253)
Q Consensus      1030 ~I~~Ge~iaIvG~SGSGKSTL~~lL~ 1055 (1253)
                      -+++|+.+-|.|++||||||+..-++
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             95588799998589898899999999

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=86.03  E-value=0.3  Score=22.00  Aligned_cols=110  Identities=19%  Similarity=0.237  Sum_probs=55.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf             68999849999688999998423789841899999517999978772332888067876521388885029988799999
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIEL 1114 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreNL~~g~~~~s~~ei 1114 (1253)
                      =++.|+|+-||||||+.+.|+.-|.    -..|+--       +-+|+.+    ++..-+...+.+.+.-+. ...++.+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g----~~~is~g-------dllr~~~----~~~~~~~~~~~~~~~~~~-~v~~~~~   70 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFE----LKHLSSG-------DLLRDNM----LRGTEIGVLAKTFIDQGK-LIPDDVM   70 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBC----CEEEEHH-------HHHHHHH----HTTCHHHHHHHHHHHTTC-CCCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHC----CEEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHHH-HCCCHHH
T ss_conf             1699988999987999999999979----8687189-------9999998----740156689998763664-1330344


Q ss_pred             HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             999999009899972878765422599998892499999999986059987897266
Q 000851         1115 MKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEA 1171 (1253)
Q Consensus      1115 ~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILILDEp 1171 (1253)
                      ....+.. +    ... ....-.+ + |  +..-..|.-.+.+. +.-..++.||-|
T Consensus        71 ~~l~~~~-~----~~~-~~~~~il-d-G--fPr~~~q~~~l~~~-~~~~~vi~L~v~  116 (189)
T d2ak3a1          71 TRLVLHE-L----KNL-TQYNWLL-D-G--FPRTLPQAEALDRA-YQIDTVINLNVP  116 (189)
T ss_dssp             HHHHHHH-H----HHH-TTSCEEE-E-S--CCCSHHHHHHHHTT-CCCCEEEEEECC
T ss_pred             HHHHHHH-H----HHH-HHCCCCC-C-C--CCCHHHHHHHHHHC-CCCEEEEEEECC
T ss_conf             5445554-4----212-1058424-4-5--21000678876315-753299997244

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=86.01  E-value=0.28  Score=22.22  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899938999999971588
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      .++++|...||||||++.|+|.--
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf             599981898979999999968997

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=86.01  E-value=0.3  Score=22.00  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89689998499996889999984237
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      .+..+.|.|++|+|||||++-++.-.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             59879998699982999999999977

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=86.00  E-value=0.27  Score=22.32  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=16.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             99999858999389999999715
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .+++|+|+-||||||+++.|...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
T ss_conf             89999799998899999999986

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.93  E-value=0.35  Score=21.43  Aligned_cols=21  Identities=24%  Similarity=0.585  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |++++|++|+|||||++-+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999698999999970

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.91  E-value=0.59  Score=19.56  Aligned_cols=30  Identities=37%  Similarity=0.536  Sum_probs=22.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf             899984999968899999842-----378984189
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR-----FYDPISGTV 1065 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g-----l~~p~~G~I 1065 (1253)
                      |+.++|.+|+|||||++-+..     -|.|+.|..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~   41 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS   41 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             89999999979999999997399885457664520

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.82  E-value=0.6  Score=19.52  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=17.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .+.++|.+|+|||||++-+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899598999999970

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=85.74  E-value=0.24  Score=22.80  Aligned_cols=24  Identities=25%  Similarity=0.540  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899938999999971588
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      .+.+.||+|+||||+++++.+.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             389889799878889999999849

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.74  E-value=0.29  Score=22.13  Aligned_cols=26  Identities=15%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             838999999858999389999999715
Q 000851          401 VDAGKTFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       401 i~~g~~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      ++.. .+||+|+..+|||||++.|++.
T Consensus         3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           3 IRSP-IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf             8998-7999969985499999999823

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.72  E-value=0.61  Score=19.48  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|.+|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899499999999973

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.70  E-value=0.29  Score=22.11  Aligned_cols=21  Identities=38%  Similarity=0.675  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999098999999982

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=0.33  Score=21.70  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899938999999971588
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      .++++|.+|+|||||++-+.+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999989899399999999818856

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.67  E-value=0.59  Score=19.62  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|.+|+|||||++-+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899789999999971

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=85.67  E-value=0.29  Score=22.09  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999898999999971

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.66  E-value=0.28  Score=22.30  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999799899999999980

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=85.64  E-value=0.38  Score=21.20  Aligned_cols=29  Identities=17%  Similarity=0.208  Sum_probs=24.6

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             77489689998499996889999984237
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1030 ~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      -+++|+.+-|.|++|+||||++.-++--.
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             86288599999179999899999999999

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.64  E-value=0.29  Score=22.07  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=17.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899598999999982

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.60  E-value=0.31  Score=21.83  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89998499996889999984237
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      .|||+|+..+|||||++.|++-.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHC
T ss_conf             79999699854999999998236

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.56  E-value=0.32  Score=21.78  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899938999999971588
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      +++|-|.-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899989987899999999999998

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.48  E-value=0.35  Score=21.45  Aligned_cols=29  Identities=28%  Similarity=0.437  Sum_probs=23.4

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             83899999985899938999999971588
Q 000851          401 VDAGKTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       401 i~~g~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      +++..-+.+.||+|+|||++++.+.....
T Consensus        35 ~~~~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          35 VKPPRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             99886468766998883089999998748

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.46  E-value=0.6  Score=19.55  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      +++++|..|+|||||++-+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899098999999984

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=85.41  E-value=0.37  Score=21.27  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=16.2

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             8389999998589993899999997158
Q 000851          401 VDAGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       401 i~~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .+||.++++.|+-||||||+++.+.+-+
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             7998299996687765889999987642

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.37  E-value=0.48  Score=20.33  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=21.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9999998589993899999997158
Q 000851          404 GKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       404 g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .-.++|+|+.|+|||||+.-+...+
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             1598611799888999999999987

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.19  E-value=0.62  Score=19.42  Aligned_cols=109  Identities=16%  Similarity=0.233  Sum_probs=64.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCCCHH
Q ss_conf             89999998589993899999997158899758999996179988888740037880467668123899973399999999
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD  482 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~  482 (1253)
                      .+..+.+.||+|+||+|++..+.....-..-         ..       ..+-++  +|   .         + ....-+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~---------~h-------~D~~~i--~~---~---------~-~~I~Id   62 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPP---------KA-------SDVLEI--DP---E---------G-ENIGID   62 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCC---------CT-------TTEEEE--CC---S---------S-SCBCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCC---------CC-------CCEEEE--EC---C---------C-CCCCHH
T ss_conf             9855998898998889999999999843456---------79-------988998--07---7---------6-789989


Q ss_pred             HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             99999998171888861998754412589987896899999999984249988898376888899989999999998708
Q 000851          483 RVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS  562 (1253)
Q Consensus       483 ~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqrialARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~  562 (1253)
                      ++.+..+      ++..-|.                           ..+.+|+|+||+- .|...+...+.+.+.+-..
T Consensus        63 ~IR~i~~------~~~~~~~---------------------------~~~~KviIId~ad-~l~~~aqNaLLK~LEEPp~  108 (198)
T d2gnoa2          63 DIRTIKD------FLNYSPE---------------------------LYTRKYVIVHDCE-RMTQQAANAFLKALEEPPE  108 (198)
T ss_dssp             HHHHHHH------HHTSCCS---------------------------SSSSEEEEETTGG-GBCHHHHHHTHHHHHSCCT
T ss_pred             HHHHHHH------HHHHCCC---------------------------CCCCEEEEEECCC-CCCHHHHHHHHHHHHCCCC
T ss_conf             9999999------9961754---------------------------5898799994731-0366666478887737898


Q ss_pred             CCEEEEECCCCHHH
Q ss_conf             97399981492354
Q 000851          563 NRTTIVVAHRLSTV  576 (1253)
Q Consensus       563 ~~t~i~itH~~~~~  576 (1253)
                      +...|++|++.+.+
T Consensus       109 ~t~fiLit~~~~~l  122 (198)
T d2gnoa2         109 YAVIVLNTRRWHYL  122 (198)
T ss_dssp             TEEEEEEESCGGGS
T ss_pred             CCEEEECCCCHHHC
T ss_conf             85222206995668

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.12  E-value=0.31  Score=21.92  Aligned_cols=22  Identities=32%  Similarity=0.668  Sum_probs=20.2

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998589993899999997158
Q 000851          407 FAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       407 ~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      +.+.||+|+||||+++.++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9998999998499999999997

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=85.10  E-value=0.25  Score=22.70  Aligned_cols=35  Identities=29%  Similarity=0.473  Sum_probs=23.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             89689998499996889999984237898418999
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLI 1067 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~i 1067 (1253)
                      +-..+++|||+|+||||.+-=|...+.-..-+|.+
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l   42 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML   42 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99799998999999899999999999977994799

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.06  E-value=0.34  Score=21.54  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=22.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC---CCCCEEEEC
Q ss_conf             96899984999968899999842378---984189999
Q 000851         1034 GRSLAVVGQSGSGKSTVISLVMRFYD---PISGTVLID 1068 (1253)
Q Consensus      1034 Ge~iaIvG~SGSGKSTL~~lL~gl~~---p~~G~I~id 1068 (1253)
                      .-++||.|+=|+|||||+.-|...+.   ..-|-|.+|
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD   88 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD   88 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             15986117998889999999999876368751344346

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.03  E-value=0.37  Score=21.28  Aligned_cols=24  Identities=25%  Similarity=0.482  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      .|+|-|.-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899989987899999999999998

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=85.02  E-value=0.48  Score=20.31  Aligned_cols=30  Identities=17%  Similarity=0.395  Sum_probs=24.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             968999849999688999998423789841
Q 000851         1034 GRSLAVVGQSGSGKSTVISLVMRFYDPISG 1063 (1253)
Q Consensus      1034 Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G 1063 (1253)
                      ...+.|.||.|+||||+++.+...+....+
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             881688898999899999999999754468

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.98  E-value=0.36  Score=21.39  Aligned_cols=34  Identities=24%  Similarity=0.236  Sum_probs=25.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf             899984999968899999842378984189999951
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 1071 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~d 1071 (1253)
                      .+-+.||+|+||||+++++++-+.-.  -+.++..+
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~~   87 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASD   87 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH--HHCCCCCC
T ss_conf             49998799998889999999998751--20134432

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=84.71  E-value=0.15  Score=24.49  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             999998589993899999997158
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      -.++++|++++|||||++.|.+.-
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             789998899998999999985898

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.69  E-value=0.55  Score=19.85  Aligned_cols=21  Identities=33%  Similarity=0.553  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |++++|.+|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899598999999982

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=84.64  E-value=0.58  Score=19.64  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=24.2

Q ss_pred             CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             4112038774896899984999968899999842
Q 000851         1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1023 vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      .+|.- +---.|.-+.|+|+||+||||++..|..
T Consensus         4 ~lH~~-~v~~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_           4 SMHGV-LVDIYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEE-EEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEE-EEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             28999-9999999999980899998999999998

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=84.61  E-value=0.34  Score=21.58  Aligned_cols=39  Identities=26%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEE
Q ss_conf             883899999985899938999999971588997589-999961
Q 000851          400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI-LLDGHD  441 (1253)
Q Consensus       400 ~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i-~i~g~~  441 (1253)
                      .++++..+.+.||.|+|||++++.++++..   |.+ .+++.+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~  189 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPL  189 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCC
T ss_conf             899767699989999888999999999859---9789997742

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=84.54  E-value=0.37  Score=21.24  Aligned_cols=26  Identities=19%  Similarity=0.311  Sum_probs=21.8

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             48968999849999688999998423
Q 000851         1032 SAGRSLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1032 ~~Ge~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      ++.=++.++|..|+|||||++-|.+-
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf             98579999999998989999999668

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.54  E-value=0.33  Score=21.69  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=10.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999849999688999998423
Q 000851         1037 LAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1037 iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      +-|.||+|+||||++++++.-
T Consensus        48 lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             999789997487999999999

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=84.53  E-value=0.29  Score=22.13  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9999998589993899999997158
Q 000851          404 GKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       404 g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      ...+.+.||+|||||++++.++...
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             8079988969998899999986201

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.51  E-value=0.45  Score=20.52  Aligned_cols=32  Identities=22%  Similarity=0.338  Sum_probs=27.4

Q ss_pred             CCEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             20288838999999858999389999999715
Q 000851          396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       396 ~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      |.-+.+.+|++.+|.|++|+|||||+.-+..-
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             10256367887776679998989999999998

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.50  E-value=0.39  Score=21.06  Aligned_cols=30  Identities=17%  Similarity=0.355  Sum_probs=24.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             8999849999688999998423789841899999
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 1069 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG 1069 (1253)
                      ++.|.|+-||||||+.+.|.--|    |-..|+.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~   33 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT   33 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf             99998999999899999999996----9945834

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.47  E-value=0.37  Score=21.28  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .++++|.+|+|||||++-+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999998993999999999719

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=84.25  E-value=0.7  Score=18.99  Aligned_cols=32  Identities=22%  Similarity=0.179  Sum_probs=26.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             99998589993899999997158899758999
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILL  437 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i  437 (1253)
                      .+.|-|+-|+||||+++.|...+....+.+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99998886678999999999986569976998

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=84.17  E-value=0.46  Score=20.45  Aligned_cols=32  Identities=16%  Similarity=0.178  Sum_probs=27.9

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             77489689998499996889999984237898
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 1061 (1253)
Q Consensus      1030 ~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~ 1061 (1253)
                      ..+||..+.+.|+=||||||+++-+.+-+...
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             57998299996687765889999987642234

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.12  E-value=0.34  Score=21.51  Aligned_cols=26  Identities=23%  Similarity=0.209  Sum_probs=22.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89999998589993899999997158
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      |=..++|+||.++|||||+|.|.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf             87999988999997999999980998

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.11  E-value=0.52  Score=20.08  Aligned_cols=28  Identities=32%  Similarity=0.519  Sum_probs=16.2

Q ss_pred             EEEEECCCCCCHHHHHHHH--HCCCCCCCC
Q ss_conf             9999858999389999999--715889975
Q 000851          406 TFAFVGPSGSGKSTIISMV--QRLYEPTSG  433 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll--~g~~~~~~G  433 (1253)
                      .+.++|.+|+|||||++-+  ...+.|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf             999998999998999998846898887241

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=84.07  E-value=0.33  Score=21.69  Aligned_cols=30  Identities=27%  Similarity=0.414  Sum_probs=23.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             6899984999968899999842378984189999
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 1068 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~id 1068 (1253)
                      ..|||+|.-||||||.++.|..-+    |-..+|
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~   31 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf             899997999988999999999868----985980

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.06  E-value=0.36  Score=21.34  Aligned_cols=21  Identities=19%  Similarity=0.558  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999198999999972

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.96  E-value=0.37  Score=21.29  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .++++|.+|+|||||++-+...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999996789999999868

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.96  E-value=0.39  Score=21.07  Aligned_cols=21  Identities=19%  Similarity=0.328  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|.+|+|||||++-+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999799999999974

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.94  E-value=0.41  Score=20.87  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .+||||...+|||||++.|.|-
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             CEEEECCCCCCHHHHHHHHHCC
T ss_conf             1768899999899999999788

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.92  E-value=0.39  Score=21.06  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .++++|++|+|||||++-+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999993999999999629

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=83.86  E-value=0.44  Score=20.67  Aligned_cols=35  Identities=17%  Similarity=0.276  Sum_probs=25.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf             8999849999688999998423789841899999517
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI 1072 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~p~~G~I~idG~di 1072 (1253)
                      .+-+.||.|+||||+++++..-+....  +.+++.+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~   71 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVL   71 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCCC
T ss_conf             489879999738899999985038885--33257442

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.68  E-value=0.73  Score=18.81  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=17.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .+.++|.+|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999598999999972

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=83.67  E-value=0.73  Score=18.81  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             6899984999968899999842378
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      ..+-+.||.|+|||++++.+.+-+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             6488766898883599999998739

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=83.48  E-value=0.36  Score=21.40  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=22.1

Q ss_pred             CEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEEC
Q ss_conf             99999858999389999999-71588997589999
Q 000851          405 KTFAFVGPSGSGKSTIISMV-QRLYEPTSGKILLD  438 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll-~g~~~~~~G~i~i~  438 (1253)
                      ..+.|+|++|||||++++.+ ...+....+-|.+|
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             65899907999689999999999984799889996

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.48  E-value=0.64  Score=19.28  Aligned_cols=28  Identities=32%  Similarity=0.552  Sum_probs=14.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             9999858999389999999715889975
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLYEPTSG  433 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~~~~~G  433 (1253)
                      .+.++|..|+|||||++-+....-|+.|
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             9999999998889999988408979724

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.44  E-value=0.38  Score=21.16  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998499996889999984237
Q 000851         1037 LAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1037 iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      +-+.||+|+||||+++.+++-+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9998999998499999999997

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.43  E-value=0.45  Score=20.57  Aligned_cols=21  Identities=19%  Similarity=0.404  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |+.++|.+|+|||||++-+.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999198999999973

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=83.38  E-value=0.21  Score=23.31  Aligned_cols=26  Identities=27%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89689998499996889999984237
Q 000851         1033 AGRSLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1033 ~Ge~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      +...+++|||+|+||||.+-=|...+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99899998999998899999999999

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.38  E-value=0.44  Score=20.67  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|.+|+|||||++-+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999298999999973

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=83.29  E-value=0.42  Score=20.79  Aligned_cols=73  Identities=22%  Similarity=0.316  Sum_probs=44.7

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCC
Q ss_conf             7748968999849999688999998423789841-899999517999978772332888067876521388885029988
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG-TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNED 1108 (1253)
Q Consensus      1030 ~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G-~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreNL~~g~~~ 1108 (1253)
                      -|++|..+-|.|++||||||++.-++.-..-..| .++||.-.  .++++. -+++++=           -||+.+..++
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~~-a~~~Gvd-----------~d~v~~~~~~  115 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPIY-ARKLGVD-----------IDNLLCSQPD  115 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH-HHHTTCC-----------GGGCEEECCS
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCHHH-HHHHCCC-----------HHHEEEECCC
T ss_conf             9667358998057774789999999999870898799986544--548999-9983998-----------7997996289


Q ss_pred             CCHHHHHHH
Q ss_conf             799999999
Q 000851         1109 ASEIELMKA 1117 (1253)
Q Consensus      1109 ~s~~ei~~a 1117 (1253)
                       +.|+..+.
T Consensus       116 -~~E~~~~~  123 (263)
T d1u94a1         116 -TGEQALEI  123 (263)
T ss_dssp             -SHHHHHHH
T ss_pred             -CHHHHHHH
T ss_conf             -89999999

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=83.28  E-value=0.28  Score=22.20  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=16.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+.+
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999988999988733

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.19  E-value=0.46  Score=20.50  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89998499996889999984237
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFY 1058 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~ 1058 (1253)
                      .+++||...||||||++.|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             69997689897999999996898

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.11  E-value=0.47  Score=20.42  Aligned_cols=53  Identities=17%  Similarity=0.195  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             49999999998605998--7897266689996989999999998728964999815
Q 000851         1148 GQKQRVAIARAILKNPS--ILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1201 (1253)
Q Consensus      1148 GQrQRlaLARALlr~p~--ILILDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IsH 1201 (1253)
                      .+.+...+++.+++++.  |+....++..........+.+.+... ..+|++++++
T Consensus       153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk  207 (306)
T d1jwyb_         153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK  207 (306)
T ss_dssp             SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEEC
T ss_conf             899999999999827775168763256310034999999973867-8858999820

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.87  E-value=0.44  Score=20.67  Aligned_cols=45  Identities=22%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf             9988898376888899989999999998708973999814923544
Q 000851          532 NPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVR  577 (1253)
Q Consensus       532 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~  577 (1253)
                      +.+++++||.-. +.......+...+.........+++++..+.+.
T Consensus       101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~  145 (224)
T d1sxjb2         101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKII  145 (224)
T ss_dssp             CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred             CEEEEEEECCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHH
T ss_conf             359999824432-321577877520112333336653147430210

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=82.73  E-value=0.55  Score=19.83  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589993899999997158
Q 000851          406 TFAFVGPSGSGKSTIISMVQRLY  428 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~~  428 (1253)
                      .++++|+..+|||||++.|.|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHH
T ss_conf             99999345884999999997034

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.60  E-value=0.8  Score=18.50  Aligned_cols=21  Identities=24%  Similarity=0.556  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |+.++|++|+|||||++-+.+
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999799999999984

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.55  E-value=0.45  Score=20.55  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|+.|+|||||++-+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999098999999961

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.50  E-value=0.59  Score=19.60  Aligned_cols=28  Identities=36%  Similarity=0.422  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf             9999858999389999999-715889975
Q 000851          406 TFAFVGPSGSGKSTIISMV-QRLYEPTSG  433 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll-~g~~~~~~G  433 (1253)
                      .+.++|.+|+|||||++-+ .+.+.|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             79999899998899999895098278888

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.49  E-value=0.48  Score=20.31  Aligned_cols=21  Identities=24%  Similarity=0.556  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      +++++|.+|+|||||++-+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999498999999972

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.48  E-value=0.67  Score=19.15  Aligned_cols=21  Identities=38%  Similarity=0.629  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |++++|.+|+|||||++-+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999799899999999980

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=82.41  E-value=0.81  Score=18.45  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             99999858999389999999715
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      =.++|||-..+|||||++.|.+-
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
T ss_conf             34888899999889999999779

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.37  E-value=0.47  Score=20.38  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|.+|+|||||++-+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999799698999999973

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.33  E-value=0.46  Score=20.44  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      .+.++|.+|+|||||++-+..-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999998993889999999719

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=82.29  E-value=0.33  Score=21.62  Aligned_cols=34  Identities=15%  Similarity=0.278  Sum_probs=29.1

Q ss_pred             CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             2038774896899984999968899999842378
Q 000851         1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1026 ~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      |.=+.|-+|++.+|+|++|+|||||+..+.+-..
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             4125645787556867999887899999999775

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=82.27  E-value=0.53  Score=19.98  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      ++.++|++|+|||||++-+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999898999999971

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=0.57  Score=19.72  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |++++|.+|+|||||++-+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999198999999961

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.13  E-value=0.51  Score=20.13  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      +++++|..|+|||||++-+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899088999999971

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.11  E-value=0.54  Score=19.94  Aligned_cols=21  Identities=24%  Similarity=0.612  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |++++|.+|+|||||++-+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999198999999971

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=82.03  E-value=0.76  Score=18.69  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=24.6

Q ss_pred             CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             4112038774896899984999968899999842
Q 000851         1023 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1023 vL~~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      .+|. ++---.|.-+.|.|+||+||||++..|..
T Consensus         5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2           5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             4889-99999999999980899999999999998

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.03  E-value=0.48  Score=20.35  Aligned_cols=74  Identities=20%  Similarity=0.455  Sum_probs=45.5

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCC
Q ss_conf             88389999998589993899999997158899758-99999617998888874003788046766812389997339999
Q 000851          400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK-ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED  478 (1253)
Q Consensus       400 ~i~~g~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~-i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~  478 (1253)
                      -++.|.++-+.||+||||||++.-++.......|. ++||...  .+++++.+ ++|.-+           +|+.+..++
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~GvD~-----------d~il~~~~~  121 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGVDT-----------DSLLVSQPD  121 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTCCG-----------GGCEEECCS
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHH-HHCCCH-----------HHEEEECCC
T ss_conf             8666336999648874889999999998754898899998976--67999999-809988-----------995896699


Q ss_pred             CCHHHHHHHH
Q ss_conf             9999999999
Q 000851          479 ASMDRVIEAA  488 (1253)
Q Consensus       479 ~~~~~~~~~~  488 (1253)
                       +.|++.+.+
T Consensus       122 -~~E~~~~~~  130 (269)
T d1mo6a1         122 -TGEQALEIA  130 (269)
T ss_dssp             -SHHHHHHHH
T ss_pred             -CHHHHHHHH
T ss_conf             -899999999

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.00  E-value=0.55  Score=19.84  Aligned_cols=21  Identities=38%  Similarity=0.691  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |++++|+.|+|||||++-+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999098999999982

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.87  E-value=0.48  Score=20.33  Aligned_cols=73  Identities=18%  Similarity=0.321  Sum_probs=46.3

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHHCCEEEECCCCCCCCCCHHHHHCCCCCC
Q ss_conf             7748968999849999688999998423789841-899999517999978772332888067876521388885029988
Q 000851         1030 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG-TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNED 1108 (1253)
Q Consensus      1030 ~I~~Ge~iaIvG~SGSGKSTL~~lL~gl~~p~~G-~I~idG~di~~i~~~~lR~~i~~v~Qd~~LF~gTIreNL~~g~~~ 1108 (1253)
                      -++.|..+-|.|++||||||+...++.-..-..| .++||.-.  .++++ +.+++|+=+           ||+.+..++
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gvd~-----------d~i~~~~~~  118 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGVNT-----------DELLVSQPD  118 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTCCG-----------GGCEEECCS
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHH-HHHHHCCCC-----------HHEEEECCC
T ss_conf             8667547898058765227999999999970799899998876--58999-999828981-----------237997489


Q ss_pred             CCHHHHHHH
Q ss_conf             799999999
Q 000851         1109 ASEIELMKA 1117 (1253)
Q Consensus      1109 ~s~~ei~~a 1117 (1253)
                       +-|+..+.
T Consensus       119 -~~E~~~~~  126 (268)
T d1xp8a1         119 -NGEQALEI  126 (268)
T ss_dssp             -SHHHHHHH
T ss_pred             -CHHHHHHH
T ss_conf             -99999999

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=81.85  E-value=0.46  Score=20.45  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      +++++|+.|+|||||++-+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999899999999964

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.74  E-value=0.5  Score=20.16  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|..|+|||||++-+.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999099999999970

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=81.74  E-value=0.62  Score=19.39  Aligned_cols=32  Identities=25%  Similarity=0.530  Sum_probs=24.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             9999985899938999999971588997589999
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLD  438 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~  438 (1253)
                      ....++||+|+|||.|++.|+..+..  --+.+|
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d   84 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFD   84 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCC--CEEEEC
T ss_conf             58999778750069999999863367--706741

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.63  E-value=0.55  Score=19.82  Aligned_cols=21  Identities=14%  Similarity=0.309  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|.+|+|||||++-+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999398999999982

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.57  E-value=0.55  Score=19.86  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|..|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999198999999972

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.50  E-value=0.52  Score=20.05  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=22.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             9999985899938999999971588
Q 000851          405 KTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       405 ~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      ++++|-|+-||||||+++.|...+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             1999989988859999999999873

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.45  E-value=0.85  Score=18.28  Aligned_cols=21  Identities=14%  Similarity=0.368  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |+.++|.+|+|||||++-+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999398999999982

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.36  E-value=0.88  Score=18.17  Aligned_cols=21  Identities=33%  Similarity=0.659  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |+.++|.+|+|||||++-+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899789999999973

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=80.97  E-value=0.31  Score=21.92  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=19.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899999985899938999999971588
Q 000851          403 AGKTFAFVGPSGSGKSTIISMVQRLYE  429 (1253)
Q Consensus       403 ~g~~~~ivG~sGsGKSTl~~ll~g~~~  429 (1253)
                      ....+++|||+|+||||.+--|+..+.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             998999989999998999999999999

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.90  E-value=0.49  Score=20.24  Aligned_cols=26  Identities=35%  Similarity=0.589  Sum_probs=22.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             68999849999688999998423789
Q 000851         1035 RSLAVVGQSGSGKSTVISLVMRFYDP 1060 (1253)
Q Consensus      1035 e~iaIvG~SGSGKSTL~~lL~gl~~p 1060 (1253)
                      +.|+|-|.-||||||++++|..-+..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             19999899888599999999998730

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.90  E-value=0.61  Score=19.45  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|.+|+|||||++-+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999899999999964

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.88  E-value=0.82  Score=18.43  Aligned_cols=24  Identities=29%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      |+.++|.+|+|||||++.+.+-..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             999999899299999999972867

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.76  E-value=0.65  Score=19.27  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8999849999688999998423
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      |+.+||.+|+|||||++-+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999993999999999629

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=80.71  E-value=0.76  Score=18.69  Aligned_cols=24  Identities=21%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      .+||+|.-.+|||||++.|+|...
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~~   30 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVWT   30 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             999993458849999999970344

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.69  E-value=0.61  Score=19.46  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|.+|+|||||++-+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999498999999985

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.68  E-value=0.61  Score=19.45  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=17.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|+.|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999299999999971

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.63  E-value=0.69  Score=19.02  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             899984999968899999842378
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRFYD 1059 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl~~ 1059 (1253)
                      |++++|.+|+|||||++-+.+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999989899399999999818856

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.39  E-value=0.94  Score=17.93  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |+.++|..|+|||||++-+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899098999999984

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.21  E-value=0.15  Score=24.54  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8999849999688999998423
Q 000851         1036 SLAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      +++++|++|+|||||++.|.|-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999999999999999589

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.21  E-value=0.42  Score=20.84  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=17.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899938999999971
Q 000851          406 TFAFVGPSGSGKSTIISMVQR  426 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g  426 (1253)
                      .++++|++|+|||||++-+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999088999999984

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.19  E-value=0.63  Score=19.34  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=10.6

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999849999688999998423
Q 000851         1037 LAVVGQSGSGKSTVISLVMRF 1057 (1253)
Q Consensus      1037 iaIvG~SGSGKSTL~~lL~gl 1057 (1253)
                      +-+.||.|+|||++++.+.+.
T Consensus        41 iLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHH
T ss_conf             687669988830899999987

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.14  E-value=0.64  Score=19.28  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CEEEEEECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEECCC
Q ss_conf             20387748968999849999688999998423-7898418999995
Q 000851         1026 NLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF-YDPISGTVLIDGY 1070 (1253)
Q Consensus      1026 ~isl~I~~Ge~iaIvG~SGSGKSTL~~lL~gl-~~p~~G~I~idG~ 1070 (1253)
                      |.=+.+-+||+++|.|.+|+|||||+.-+.+- ...+.+.+.+-++
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~i  105 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV  105 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEEE
T ss_pred             EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             1025636788777667999898999999999887617996999995

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.12  E-value=0.61  Score=19.47  Aligned_cols=42  Identities=19%  Similarity=0.375  Sum_probs=24.8

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf             9878972666899969899999999987289649998159115
Q 000851         1163 PSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLST 1205 (1253)
Q Consensus      1163 p~ILILDEpTSaLD~~te~~I~~~l~~~~~~~TvI~IsHrl~~ 1205 (1253)
                      .+++++||.- .+.......+...+.+.....-++++++....
T Consensus       100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~  141 (227)
T d1sxjc2         100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHK  141 (227)
T ss_dssp             CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred             EEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHH
T ss_conf             1899996632-00023789999886311200232012670877

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.09  E-value=0.63  Score=19.37  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858999389999999715
Q 000851          406 TFAFVGPSGSGKSTIISMVQRL  427 (1253)
Q Consensus       406 ~~~ivG~sGsGKSTl~~ll~g~  427 (1253)
                      -++++|+.++|||||++.|+..
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHH
T ss_conf             9999947898499999999998

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.07  E-value=0.96  Score=17.85  Aligned_cols=29  Identities=38%  Similarity=0.581  Sum_probs=22.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf             899984999968899999842-----37898418
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR-----FYDPISGT 1064 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g-----l~~p~~G~ 1064 (1253)
                      ++.++|.+|+|||||++-+.+     -|.|+.|.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~   39 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED   39 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf             9999998995989999999709888545763120

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.05  E-value=0.7  Score=19.01  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             899984999968899999842
Q 000851         1036 SLAVVGQSGSGKSTVISLVMR 1056 (1253)
Q Consensus      1036 ~iaIvG~SGSGKSTL~~lL~g 1056 (1253)
                      |+.++|.+|+|||||++-+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899399999999971