Citrus Sinensis ID: 000881

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------124
MAAPFAEGGGGGGGVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSNP
ccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHcHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcEEEccHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHcccHHHHHHHccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHccccEEEEccccccEEEccccccccccccccHHHHHHHHHHHcccccccccHcccccccccEHHHHHHHHEEEcccccccEcccccccEEcccccccccEEccccccEEEEEccccccHHccccccccccHHHHccccccEEEcccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEccccccccEEEEEEEEEcccccccccEEEEccccccccccccc
maapfaegggggggvavmpgpvnpidastqsktclkhsalkspILIFLFFHKAIKSELDVLHRAAMAFAtnlggggdinKLLERYHFFRAIYKHHcnaedevifpalDIRVKNIARTYslehegesvLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSipvnmmaeflpwlsssissdehQDMRKCLCKIIPKEKLLRQVIFAWMEgvkvsdksceDNLEHRCQRwfscacessrsskrKYVELSYdltdssmscpideIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHsiaedkvifpAVDVELSFAQEHAEEEIQFDKLRCLIESIQsagansstAEFYTKLCSQADLIMASIQKHFRneevqvlplarrhfspkRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGwackghsrnvclsssaigccpakTLAASKELKedikqpfcactckssaDEKLMLVQedeaddekrpvkrgnsmlledcdacsgaksvntpsssrsnqsccvpglgvsssnlgSSLAAAKSlrslsfspsapslnsslfnwetdlssadigcasrpidnIFKFHKAIRKDLeyldgesgklndcnETFLRQFTGRFRLLWGLYRahsnaeddivfpalesketlsnvshsytldhkqEEKLFEDISSALSELTELHEClstdltgdltrnslescdqneTVRKYNEKATELQGMCKSIRVTLDQHVFREElelwplfdrhfsveEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNewwegppapaaaahkatsescislgsdvhesldhsdhtfkpgwnDIFRMNQNELEAEIRKvsrdstldpRRKAYLIQNLMTSRWIASQQKSLQARdseisngedlfgcspsfrdaekqvfgcehykrncklraaccgklftcrfchdkvsdhsmdrkATTEMMCMRclkvqpvgpvcttlscsglsmaKYYCGIckffddervvyhcpfcnlcrvgrglgvdffhcmtcncclakklvdhkcrekgletncpiccdflftssatvralpcghfmhsdcfqaytcshyicpicskslGDMAVYFGMLDALLASEQLPEEYRDRCQEILcndcdkkgsapfhwlyhkcgfcgsynTRVIKVEstntycstsnp
maapfaegggggggVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFAtnlggggdINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWfscacessrsskrKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSagansstaEFYTKLCSQADLIMASIQKHFRNEEVQvlplarrhfspkRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLvqedeaddekrpvkrgnsmlLEDCDACSGAKsvntpsssrsnqSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEyldgesgklndCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTdltgdltrnslescdqnetvRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIrkvsrdstldprRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVEstntycstsnp
MAAPFAEgggggggVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPglgvsssnlgsslaaakslrslsfspsapslnsslfnWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGppapaaaaHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSNP
*********************************CLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLN*********************************QVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSIS***HQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACES*****RKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCK*******************************************************************************************LFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPAL********************************ELTELHECLSTDLTG******************Y**KATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEG********************************TFKPGWNDIFRM**********************KAYLIQNLMTSRWIA******************LFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTY******
****************************************KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWM***************************************************IDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELS***********FDKLRCLIESIQSAGA**STAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNV******************************************************************************************V***GVS********************************W*TDLSS****CASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHE***************ESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWL**************************************************************************YLIQNLMT**************************************FGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRV***************
***********GGGVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCA********RKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQED********VKRGNSMLLEDCDAC******************CVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPP***********ESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAS***********ISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVEST*********
********************PVNPID***QSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGV********************************************MSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCK************************************************RSNQSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLS**************CDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEG******************************DHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKS******************PSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVE***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAPFAEGGGGGGGVAVMPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSDKSCEDNLEHRCQRWFSCACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPGLGVSSSNLGSSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSNP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1239 2.2.26 [Sep-21-2011]
O14099425 Uncharacterized RING fing yes no 0.240 0.701 0.364 1e-56
Q96PM5261 RING finger and CHY zinc yes no 0.188 0.896 0.441 2e-50
Q9CR50261 RING finger and CHY zinc yes no 0.192 0.915 0.428 1e-49
Q6IRP0312 RING finger protein 126-B N/A no 0.040 0.160 0.411 5e-05
Q6DIP3311 RING finger protein 126 O no no 0.038 0.154 0.450 6e-05
Q7T0Q3312 RING finger protein 126-A N/A no 0.038 0.153 0.450 0.0002
Q9D0C1305 E3 ubiquitin-protein liga no no 0.038 0.157 0.470 0.0008
Q9Y4L5304 E3 ubiquitin-protein liga no no 0.049 0.200 0.406 0.0009
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1 Back     alignment and function desciption
 Score =  222 bits (566), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 919  QNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSP 978
            Q+ +  +I ++   S L  +RKA L+Q ++ S ++  ++   +  D    +  DL     
Sbjct: 74   QDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYLKYRRTHKKESDENQLSSSDL---EK 130

Query: 979  SFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKV 1038
            ++ D E+++ GC HY RNCK++   C + +TCR CH+   DH ++R A   M+CM C KV
Sbjct: 131  TYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSKV 190

Query: 1039 QPVGPVCTTLSCSGLSMAKYYCGICKFFDDE--RVVYHCPFCNLCRVGRGLGVDFFHCMT 1096
            QP    C    C    M +YYC  CK +DD+  +  YHC  C +CR+GRGLG D+FHC T
Sbjct: 191  QPAAQYCKY--CKN-CMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKT 247

Query: 1097 CNCCLAKKLVD-HKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHY 1155
            C  CL   + + H+C E+  + NCPIC +++F S   V  L C H +H  C + Y  ++Y
Sbjct: 248  CGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNY 307

Query: 1156 ICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCG 1215
             CP C K++ ++   F +LD  +  + +P  Y      I CNDC+ +    +H+L HKC 
Sbjct: 308  RCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCN 367

Query: 1216 FCGSYNT 1222
             C SYNT
Sbjct: 368  SCHSYNT 374

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1 Back     alignment and function description
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1 Back     alignment and function description
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1 Back     alignment and function description
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1 Back     alignment and function description
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1 Back     alignment and function description
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1239
2241084451224 predicted protein [Populus trichocarpa] 0.974 0.986 0.814 0.0
2254240351237 PREDICTED: uncharacterized protein LOC10 0.987 0.988 0.790 0.0
2555721301306 zinc finger protein, putative [Ricinus c 0.973 0.923 0.795 0.0
3064080561233 TMV-associated RING finger protein [Nico 0.958 0.962 0.725 0.0
4494390891256 PREDICTED: uncharacterized protein LOC10 0.991 0.978 0.695 0.0
4494975691256 PREDICTED: uncharacterized protein LOC10 0.991 0.978 0.694 0.0
2254559841234 PREDICTED: uncharacterized protein LOC10 0.954 0.958 0.715 0.0
3565130681236 PREDICTED: uncharacterized protein LOC10 0.983 0.986 0.690 0.0
3565311941238 PREDICTED: uncharacterized protein LOC10 0.987 0.988 0.684 0.0
3565244291234 PREDICTED: uncharacterized protein LOC10 0.982 0.986 0.697 0.0
>gi|224108445|ref|XP_002314849.1| predicted protein [Populus trichocarpa] gi|222863889|gb|EEF01020.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 2040 bits (5285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1007/1236 (81%), Positives = 1083/1236 (87%), Gaps = 28/1236 (2%)

Query: 18   MPGPVNPIDASTQSKTCLKHSALKSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGD 77
            M GPVNPID S  SKTCLK+SALKSPILIFLFFHKAI+SELD LHRAA+AFAT    GGD
Sbjct: 1    MAGPVNPIDPSAPSKTCLKNSALKSPILIFLFFHKAIRSELDGLHRAAIAFATT---GGD 57

Query: 78   INKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLN 137
            I  LLERY+ FR+IYKHHCNAEDEVIFPALDIRVKN+ARTYSLEHEGESVLFDQLFELLN
Sbjct: 58   IKPLLERYYLFRSIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHEGESVLFDQLFELLN 117

Query: 138  SSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIP 197
            S+M+NEESYRRELAS TGALQTSI QHMSKEEEQVFPLLIEKFSFEEQASL WQFLCSIP
Sbjct: 118  SNMQNEESYRRELASRTGALQTSIDQHMSKEEEQVFPLLIEKFSFEEQASLAWQFLCSIP 177

Query: 198  VNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKLLRQVIFAWMEGVKVSD--KSCEDN 255
            VNMMAEFLPWLSSSISSDEHQDM KCLCKIIP+EKLLRQVIF+WM+G K+S+  KSCEDN
Sbjct: 178  VNMMAEFLPWLSSSISSDEHQDMHKCLCKIIPEEKLLRQVIFSWMKGAKLSETCKSCEDN 237

Query: 256  LEHRCQRWFS-----------CACESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAI 304
             +  CQ   +           CACESSR  KRKY+EL+ D T S+   PIDEI+LWHNAI
Sbjct: 238  SKAWCQDSGAPTLGCQSMKGHCACESSRMGKRKYMELNCDATLSTEFHPIDEILLWHNAI 297

Query: 305  KRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQ 364
            KRELNDI EAAR IQ SGDFS+LS+FNKRLQFIAEVCIFHSIAEDK+IFPAVD ELSFAQ
Sbjct: 298  KRELNDITEAARSIQHSGDFSNLSSFNKRLQFIAEVCIFHSIAEDKIIFPAVDAELSFAQ 357

Query: 365  EHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPL 424
            EHAEEE+QFDKLRCLIESIQ+AGA +S  +FYTKLCSQAD IM +IQKHF+NEEVQVLPL
Sbjct: 358  EHAEEEVQFDKLRCLIESIQNAGAYTSLTDFYTKLCSQADQIMDNIQKHFQNEEVQVLPL 417

Query: 425  ARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSAL 484
            AR+HFS KRQRELLYQSLCVMPLKLIECVLPWLVGSLSEE ARSFLQN+YMAAPASDSAL
Sbjct: 418  ARKHFSAKRQRELLYQSLCVMPLKLIECVLPWLVGSLSEEAARSFLQNMYMAAPASDSAL 477

Query: 485  ITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLML 544
            +TLF+GWACKG S+NVCLSSSAIGCCP + LA ++E   D KQ  C C+ +SS DEK   
Sbjct: 478  VTLFSGWACKGGSKNVCLSSSAIGCCPVRILAGTEE---DTKQQSCKCSPRSSVDEKSSF 534

Query: 545  VQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPGLGVSSSNLG-S 603
            VQ D ADD +RP K GN +  ED + C  ++ V+T  SS SN+SCCVPGLGVSS+NLG S
Sbjct: 535  VQVDGADDCRRPGKCGNLLAQEDSNGCPSSEPVDTQKSSCSNKSCCVPGLGVSSNNLGIS 594

Query: 604  SLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYL 663
            SLAAAKSLRS SFSPSAPSLNSSLFNWE D S  +IGC+SRPIDNIF+FHKAIRKDLEYL
Sbjct: 595  SLAAAKSLRS-SFSPSAPSLNSSLFNWEMDTSPTNIGCSSRPIDNIFQFHKAIRKDLEYL 653

Query: 664  DGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLD 723
            D ESGKLN+CNET LRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETL NVSHSYTLD
Sbjct: 654  DVESGKLNECNETLLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLD 713

Query: 724  HKQEEKLFEDISSALSELTELHECL-STDLTGDLTRNSLESCDQNETVRKYNEKATELQG 782
            HKQEEKLFEDISSALSELT+L + L +T+   +L        D N TVR+YNE AT+LQG
Sbjct: 714  HKQEEKLFEDISSALSELTQLQDYLKNTNHADELIGKHANLSDCNYTVRQYNELATKLQG 773

Query: 783  MCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSAL 842
            MCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVG+IIGTTGAEVLQSMLPWVTSAL
Sbjct: 774  MCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDKIVGQIIGTTGAEVLQSMLPWVTSAL 833

Query: 843  TQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAPAAAAHKATSESCISLGSDVHESLDH 902
            T EEQN MMDTWKQATKNTMFSEWLNEWWEG    AA  H  TSESC    +D+HESLD 
Sbjct: 834  TLEEQNRMMDTWKQATKNTMFSEWLNEWWEG--TFAATPHATTSESC----TDLHESLDQ 887

Query: 903  SDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQA 962
            SDHTFKPGW DIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIA+QQKS QA
Sbjct: 888  SDHTFKPGWKDIFRMNQNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSPQA 947

Query: 963  RDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSM 1022
            R  + SNG DL GCSPSFR  EKQ FGCEHYKRNCKLRA CCGKLF CRFCHDKVSDHSM
Sbjct: 948  RTGDHSNGGDLLGCSPSFRGPEKQEFGCEHYKRNCKLRATCCGKLFACRFCHDKVSDHSM 1007

Query: 1023 DRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCR 1082
            DRKAT+EMMCMRCLK+QPVGPVCT++SC G SMAKYYC ICKFFDDER VYHCPFCNLCR
Sbjct: 1008 DRKATSEMMCMRCLKIQPVGPVCTSISCGGFSMAKYYCSICKFFDDERAVYHCPFCNLCR 1067

Query: 1083 VGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFM 1142
            VG GLG DFFHCM CNCCLA KL DHKCREKGLETNCPICCD +FTSSA+V+ALPCGHFM
Sbjct: 1068 VGTGLGADFFHCMKCNCCLAMKLADHKCREKGLETNCPICCDDMFTSSASVKALPCGHFM 1127

Query: 1143 HSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKK 1202
            HS CFQAYTCSHYICPICSKSLGDM+VYFGMLDALLASE+LPEEYRDRCQ+ILCNDCDKK
Sbjct: 1128 HSTCFQAYTCSHYICPICSKSLGDMSVYFGMLDALLASEELPEEYRDRCQDILCNDCDKK 1187

Query: 1203 GSAPFHWLYHKCGFCGSYNTRVIKVESTNTYCSTSN 1238
            G+APFHWLYHKC FCGSYNTRVIKV+ST++ CSTSN
Sbjct: 1188 GTAPFHWLYHKCRFCGSYNTRVIKVDSTDSNCSTSN 1223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424035|ref|XP_002279535.1| PREDICTED: uncharacterized protein LOC100255880 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572130|ref|XP_002527005.1| zinc finger protein, putative [Ricinus communis] gi|223533640|gb|EEF35377.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|306408056|dbj|BAJ16529.1| TMV-associated RING finger protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449439089|ref|XP_004137320.1| PREDICTED: uncharacterized protein LOC101215023 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449497569|ref|XP_004160438.1| PREDICTED: uncharacterized protein LOC101224245 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225455984|ref|XP_002278705.1| PREDICTED: uncharacterized protein LOC100254283 [Vitis vinifera] gi|297734230|emb|CBI15477.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513068|ref|XP_003525236.1| PREDICTED: uncharacterized protein LOC100801725 [Glycine max] Back     alignment and taxonomy information
>gi|356531194|ref|XP_003534163.1| PREDICTED: uncharacterized protein LOC100776832 [Glycine max] Back     alignment and taxonomy information
>gi|356524429|ref|XP_003530831.1| PREDICTED: uncharacterized protein LOC100803002 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1239
TAIR|locus:20896781254 BTS "BRUTUS" [Arabidopsis thal 0.955 0.944 0.641 0.0
TAIR|locus:20271761259 AT1G74770 [Arabidopsis thalian 0.253 0.249 0.603 1.3e-235
TAIR|locus:20112661254 AT1G18910 [Arabidopsis thalian 0.249 0.246 0.608 7.3e-235
POMBASE|SPAC2F3.16425 SPAC2F3.16 "ubiquitin-protein 0.269 0.785 0.345 6.1e-62
ASPGD|ASPL0000053938 522 AN10185 [Emericella nidulans ( 0.197 0.469 0.438 1.6e-61
UNIPROTKB|J9NZR5259 RCHY1 "Uncharacterized protein 0.194 0.930 0.437 2.8e-57
TAIR|locus:2099212287 AT3G62970 [Arabidopsis thalian 0.208 0.898 0.425 2.6e-56
UNIPROTKB|Q96PM5261 RCHY1 "RING finger and CHY zin 0.184 0.877 0.446 4.2e-56
RGD|1359180261 Rchy1 "ring finger and CHY zin 0.184 0.877 0.446 1.5e-55
MGI|MGI:1915348261 Rchy1 "ring finger and CHY zin 0.184 0.877 0.442 3.1e-55
TAIR|locus:2089678 BTS "BRUTUS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4068 (1437.1 bits), Expect = 0., P = 0.
 Identities = 780/1215 (64%), Positives = 913/1215 (75%)

Query:    42 SPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDE 101
             SPILIFLFFHKA+ SEL+ LHR A+ FAT  G   D+  L ERY F R+IYKHHCNAEDE
Sbjct:    53 SPILIFLFFHKAVCSELEALHRLALEFAT--GHHVDLRLLRERYRFLRSIYKHHCNAEDE 110

Query:   102 VIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSI 161
             VIF ALDIRVKN+A+TYSLEH+GES LFD LFELLNS+   +ESYRRELA  TGALQTS+
Sbjct:   111 VIFSALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSATETDESYRRELARSTGALQTSV 170

Query:   162 SQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMR 221
             SQH++KE++QVFPLLIEKF +EEQA +VW+FLCSIPVNM+A FLPW+SSSIS DE ++M+
Sbjct:   171 SQHLAKEQKQVFPLLIEKFKYEEQAYIVWRFLCSIPVNMLAVFLPWISSSISVDESKEMQ 230

Query:   222 KCLCKIIPKEKLLRQVIFAWMEGVKVSDKSC--EDNLEHRCQRWFS-----------CAC 268
              CL KI+P EKLL+QVIF W+ G   +  SC  ED++   C    S           CAC
Sbjct:   231 TCLKKIVPGEKLLQQVIFTWLGGKSNTVASCRIEDSMFQCCLDSSSSMLPCKASREQCAC 290

Query:   269 ESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLS 328
             E S+  KRKY EL+ +   S    P+DEI LWH +I +E+ +IA+ ARKIQLSGDFSDLS
Sbjct:   291 EGSKIGKRKYPELT-NFGSSDTLHPVDEIKLWHKSINKEMKEIADEARKIQLSGDFSDLS 349

Query:   329 AFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGA 388
             AF++RLQ+IAEVCIFHS+AEDK+IFPAVD E SF++EH EEE QF++ RCLIE+I+SAGA
Sbjct:   350 AFDERLQYIAEVCIFHSLAEDKIIFPAVDGEFSFSEEHDEEENQFNEFRCLIENIKSAGA 409

Query:   389 NS-STAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPL 447
             +S S AEFYTKLCS AD IM +IQ+HF NEE+QVLPLAR++FS KRQ+ELLYQSLC+MPL
Sbjct:   410 SSTSAAEFYTKLCSHADQIMETIQRHFHNEEIQVLPLARKNFSFKRQQELLYQSLCIMPL 469

Query:   448 KLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAI 507
             +LIE VLPWL  SL+E+EA++FL+N+   AP SD AL+TLF+GWACKG     CLS +  
Sbjct:   470 RLIERVLPWLTASLTEDEAKNFLKNLQAGAPKSDVALVTLFSGWACKGRKAGECLSPNGN 529

Query:   508 GCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLED 567
             G CP KTL+  KE+         +  C S + +     Q+      KRP KR   +  E 
Sbjct:   530 GLCPVKTLSNIKEVNLQSCNACASVPCTSRSTKSCCQHQD------KRPAKRTAVLSCEK 583

Query:   568 CDACSGAKSVNTPSSSRSNQSCCVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXX 626
                    +  N    S + +SCCVP                                   
Sbjct:   584 KTTPHSTEVANGCKPSGNGRSCCVPDLGVNNNCLELGSLPAAKAMRSSSLNSAAPALNSS 643

Query:   627 XXXWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFR 686
                WE D +S   G A RP+  IFKFHKAI KDLE+LD ESGKL DC+ TF+RQF GRF 
Sbjct:   644 LFIWEMDSNSFGTGHAERPVATIFKFHKAISKDLEFLDVESGKLIDCDGTFIRQFIGRFH 703

Query:   687 LLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHE 746
             LLWG Y+AHSNAEDDI+FPALESKETL NVSHSYTLDHKQEEKLF DI S L+EL+ LHE
Sbjct:   704 LLWGFYKAHSNAEDDILFPALESKETLHNVSHSYTLDHKQEEKLFGDIYSVLTELSILHE 763

Query:   747 CLSTD-LTGDLTRNSL--ESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELW 803
              L +D +  D+ +        D  +  +KYNE AT+LQGMCKSI++TLDQH+F EELELW
Sbjct:   764 KLQSDSMMEDIAQTDTVRTDIDNGDCNKKYNELATKLQGMCKSIKITLDQHIFLEELELW 823

Query:   804 PLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMF 863
             PLFD+HFS++EQDKIVGRIIGTTGAEVLQSMLPWVTSAL+++EQN MMDTWKQATKNTMF
Sbjct:   824 PLFDKHFSIQEQDKIVGRIIGTTGAEVLQSMLPWVTSALSEDEQNRMMDTWKQATKNTMF 883

Query:   864 SEWLNEWWEGXXXXXXXXHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELE 923
              EWLNE W+G           TS+      +D  E LD S   FKPGW DIFRMNQNELE
Sbjct:   884 DEWLNECWKGSPDSSSTE---TSKPSPQKDNDHQEILDQSGELFKPGWKDIFRMNQNELE 940

Query:   924 AEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDA 983
             AEIRKV +DSTLDPRRK YL+QN  TSRWIA+QQK  +  ++ + NG+   GCSPSFRD 
Sbjct:   941 AEIRKVYQDSTLDPRRKDYLVQNWRTSRWIAAQQKLPKEAETAV-NGDVELGCSPSFRDP 999

Query:   984 EKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGP 1043
             EKQ++GCEHYKRNCKLRAACC +LFTCRFCHDKVSDHSMDRK  TEM+CMRCLKVQPVGP
Sbjct:  1000 EKQIYGCEHYKRNCKLRAACCDQLFTCRFCHDKVSDHSMDRKLVTEMLCMRCLKVQPVGP 1059

Query:  1044 VCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAK 1103
             +CTT SC G  MAK+YC ICK FDDER VYHCPFCNLCRVG GLG+DFFHCMTCNCCL  
Sbjct:  1060 ICTTPSCDGFPMAKHYCSICKLFDDERAVYHCPFCNLCRVGEGLGIDFFHCMTCNCCLGM 1119

Query:  1104 KLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKS 1163
             KLV+HKC EK LETNCPICC+FLFTSS  VRALPCGH+MHS CFQAYTCSHY CPIC KS
Sbjct:  1120 KLVNHKCLEKSLETNCPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSHYTCPICGKS 1179

Query:  1164 LGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTR 1223
             LGDMAVYFGMLDALLA+E+LPEEY++RCQ+ILCNDC++KG+  FHWLYHKCG CGSYNTR
Sbjct:  1180 LGDMAVYFGMLDALLAAEELPEEYKNRCQDILCNDCERKGTTRFHWLYHKCGSCGSYNTR 1239

Query:  1224 VIKVESTNTYCSTSN 1238
             VIK E+    CSTS+
Sbjct:  1240 VIKSETIPPDCSTSS 1254
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0010106 "cellular response to iron ion starvation" evidence=IEP
TAIR|locus:2027176 AT1G74770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011266 AT1G18910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC2F3.16 SPAC2F3.16 "ubiquitin-protein ligase E3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053938 AN10185 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZR5 RCHY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2099212 AT3G62970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1915348 Rchy1 "ring finger and CHY zinc finger domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_X001114
hypothetical protein (1224 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1239
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 1e-31
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 3e-27
pfam0549574 pfam05495, zf-CHY, CHY zinc finger 8e-26
cd12108130 cd12108, Hr-like, Hemerythrin-like domain 4e-18
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 8e-11
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 1e-08
cd12109158 cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL 2e-07
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 5e-06
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 4e-04
cd0016245 cd00162, RING, RING-finger (Really Interesting New 5e-04
pfam01814129 pfam01814, Hemerythrin, Hemerythrin HHE cation bin 6e-04
smart0018440 smart00184, RING, Ring finger 6e-04
COG5592171 COG5592, COG5592, Uncharacterized conserved protei 0.001
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information 
 Score =  119 bits (301), Expect = 1e-31
 Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 46  IFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFP 105
           +    H+AI+ EL  L R A A A   GG  D   L ER+ F      HH  AE+E++FP
Sbjct: 2   LLKLEHRAIRRELGRLARLAGALAA--GGPDDARALAERFRFLATELHHHHTAEEELLFP 59

Query: 106 ALDIRVK--NIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQ 163
           AL  RV    +      EH     L  +L  LL + +  +     ELA+   AL+T++ +
Sbjct: 60  ALRERVPLAAVLDALEAEHAEIDELLARLEALLPALLAGDAEDAEELAAALEALRTALRE 119

Query: 164 HMSKEEEQVFP 174
           H+ +EEE++FP
Sbjct: 120 HLDEEEEELFP 130

Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis. Length = 130
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information
>gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger Back     alignment and domain information
>gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|213984 cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL5-like proteins Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|227879 COG5592, COG5592, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1239
KOG1940276 consensus Zn-finger protein [General function pred 100.0
PF1459961 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A. 99.9
PF0549571 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc 99.8
PF01814133 Hemerythrin: Hemerythrin HHE cation binding domain 99.19
PF01814133 Hemerythrin: Hemerythrin HHE cation binding domain 99.18
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 99.13
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 98.85
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 98.8
PRK10992220 iron-sulfur cluster repair di-iron protein; Provis 98.78
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 98.76
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 98.74
COG4357105 Zinc finger domain containing protein (CHY type) [ 98.73
TIGR03652216 FeS_repair_RIC iron-sulfur cluster repair di-iron 98.66
PRK10992220 iron-sulfur cluster repair di-iron protein; Provis 98.63
PHA02929238 N1R/p28-like protein; Provisional 98.54
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 98.51
COG3945189 Uncharacterized conserved protein [Function unknow 98.51
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.5
TIGR03652216 FeS_repair_RIC iron-sulfur cluster repair di-iron 98.46
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.4
PRK13276224 cell wall biosynthesis protein ScdA; Provisional 98.31
PRK13276224 cell wall biosynthesis protein ScdA; Provisional 98.29
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.26
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 98.22
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.12
PF1463444 zf-RING_5: zinc-RING finger domain 98.09
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.03
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.01
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 98.01
COG2846221 Regulator of cell morphogenesis and NO signaling [ 98.01
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.0
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 97.99
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.95
PHA02926242 zinc finger-like protein; Provisional 97.85
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.8
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.76
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 97.7
KOG149384 consensus Anaphase-promoting complex (APC), subuni 97.66
COG3945189 Uncharacterized conserved protein [Function unknow 97.55
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.54
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.53
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.52
COG2846221 Regulator of cell morphogenesis and NO signaling [ 97.51
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 97.31
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.28
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 97.28
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 97.25
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.24
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.23
KOG2930114 consensus SCF ubiquitin ligase, Rbx1 component [Po 97.22
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 97.19
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.18
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 97.07
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 96.99
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 96.66
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.66
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 96.5
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 96.22
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 96.15
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 95.97
KOG1941518 consensus Acetylcholine receptor-associated protei 95.93
COG52191525 Uncharacterized conserved protein, contains RING Z 95.85
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 95.75
COG2461409 Uncharacterized conserved protein [Function unknow 95.61
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 95.35
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 95.33
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 95.17
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 94.94
KOG1940276 consensus Zn-finger protein [General function pred 94.9
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 94.16
KOG3970 299 consensus Predicted E3 ubiquitin ligase [Posttrans 93.89
KOG3268234 consensus Predicted E3 ubiquitin ligase [Posttrans 93.48
KOG4445 368 consensus Uncharacterized conserved protein, conta 93.43
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 93.41
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 93.02
KOG3002 299 consensus Zn finger protein [General function pred 92.71
KOG1701468 consensus Focal adhesion adaptor protein Paxillin 92.68
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 92.67
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 92.5
KOG2272332 consensus Focal adhesion protein PINCH-1, contains 92.4
KOG03091081 consensus Conserved WD40 repeat-containing protein 92.33
PF1290647 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. 91.76
KOG3039303 consensus Uncharacterized conserved protein [Funct 91.74
KOG0297 391 consensus TNF receptor-associated factor [Signal t 91.62
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 91.28
KOG2660 331 consensus Locus-specific chromosome binding protei 90.51
COG5152259 Uncharacterized conserved protein, contains RING a 90.37
KOG1002 791 consensus Nucleotide excision repair protein RAD16 89.61
COG2461409 Uncharacterized conserved protein [Function unknow 89.37
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 89.36
KOG3800 300 consensus Predicted E3 ubiquitin ligase containing 88.76
COG5175 480 MOT2 Transcriptional repressor [Transcription] 88.23
PF04641260 Rtf2: Rtf2 RING-finger 88.02
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 87.79
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 87.49
COG5592171 Uncharacterized conserved protein [Function unknow 87.26
COG5592171 Uncharacterized conserved protein [Function unknow 87.25
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 85.81
PHA02862156 5L protein; Provisional 85.78
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 84.8
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 84.35
KOG4739 233 consensus Uncharacterized protein involved in syna 84.13
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 83.85
TIGR00100115 hypA hydrogenase nickel insertion protein HypA. In 83.08
PRK00564117 hypA hydrogenase nickel incorporation protein; Pro 82.72
COG5236 493 Uncharacterized conserved protein, contains RING Z 81.83
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 81.06
PRK03824135 hypA hydrogenase nickel incorporation protein; Pro 80.32
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 80.18
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-62  Score=537.78  Aligned_cols=253  Identities=50%  Similarity=1.090  Sum_probs=240.8

Q ss_pred             CCCCcccccccccCcccccccccccccccCCcccCcccccccCCCCCccccccccccccccccccCCCCCCCccCCCCcc
Q 000881          976 CSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSM 1055 (1239)
Q Consensus       976 ~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~~v~C~~C~~~q~~~~~C~~~~C~~~~~ 1055 (1239)
                      ..+++.|+...++||+||+|+|++++|||+++|+||+||++..+|.++|+.+.+++|+.|.++||++++|.+  | +..|
T Consensus        21 ~~~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s~~h~~~r~~v~~~~C~~C~~~q~~~~~c~~--c-~~~~   97 (276)
T KOG1940|consen   21 IHSDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNESEDHDLDRKTVYELLCMKCRKIQPVGQICSN--C-HVEL   97 (276)
T ss_pred             cccccccccccccCCchhhhccccccccccceeeeEEecChhhhcccchhhhhhhhhhhHHhhhhhhhcccc--c-hhhh
Confidence            356788999999999999999999999999999999999999999999999999999999999999999999  4 7789


Q ss_pred             ceEecccccCcCCC-CccccCCCCCccccCCCCCccccccCCccccccccc-cccccccCCCCCCCcccccccccCCCcc
Q 000881         1056 AKYYCGICKFFDDE-RVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATV 1133 (1239)
Q Consensus      1056 ~~y~C~~C~l~dd~-k~~yHC~~CgiCRvG~gl~~~~fHC~~C~~C~~~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v 1133 (1239)
                      |+|||.+||||||+ ..||||++|||||+|.++  |||||++|+.|++..+ +.|+|+|++++.|||||.|++|++...+
T Consensus        98 g~~~c~~C~l~dd~~~~~~hC~~C~icr~g~~~--~~fhc~~c~~c~~~~~~~~H~c~e~~~~~ncPic~e~l~~s~~~~  175 (276)
T KOG1940|consen   98 GEYYCLICKLFDDDPSKQYHCDLCGICREGLGL--DFFHCKKCKACLSAYLSNWHKCVERSSEFNCPICKEYLFLSFEDA  175 (276)
T ss_pred             hhhcCcccccccccccceecccccccccccccc--chhHHhhhHhHHhhhcccccchhhhcccCCCchhHHHhccccccC
Confidence            99999999999988 599999999999999875  9999999999999999 6699999999999999999999999999


Q ss_pred             eecCCCCccChhhHHHhhhcCCCCCCCCcCccChhhHhhhhHHHHhhcCCChhhhccCCceeccCCCCCCCCCceeeecc
Q 000881         1134 RALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHK 1213 (1239)
Q Consensus      1134 ~~LpCGH~fH~~Ci~~wl~~~~~CPiCrksv~dm~~~~~~lD~~i~~~pmP~ey~~~~~~I~CnDC~~~s~~~~h~lg~k 1213 (1239)
                      ..++|||++|..|+.++...+|+||+|.+ ++||..+|+++|.+|+.+|||++|++++++|+||||+.+++++|||||+|
T Consensus       176 ~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~~~~~~~d~~l~~~~~p~~y~~~~~~i~cndC~~~~~~k~~~l~~k  254 (276)
T KOG1940|consen  176 GVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMSHYFRKLDKELAGSPMPEEYKNKTQDILCNDCGSGTNVKYHILYHK  254 (276)
T ss_pred             CccCcccchHHHHHHHHhccCCCCCcccc-hHHHHHHHHHHHHHHhcCCCCchhhchhheeeccCCCCCCccceehhhhh
Confidence            99999999999999999988899999999 99999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccccccCCCCcc
Q 000881         1214 CGFCGSYNTRVIKVESTNTYC 1234 (1239)
Q Consensus      1214 C~~C~syNT~~~~~~~~~~~~ 1234 (1239)
                      |+.|+|||||+++.+.....|
T Consensus       255 c~~c~~~~~r~~~~~~~~~~~  275 (276)
T KOG1940|consen  255 CGKCGSYNTRMISDPSKYDPQ  275 (276)
T ss_pred             CCCcccceeeeccCCCccCCC
Confidence            999999999999855544443

>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A Back     alignment and domain information
>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues Back     alignment and domain information
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown] Back     alignment and domain information
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein Back     alignment and domain information
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3945 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PRK13276 cell wall biosynthesis protein ScdA; Provisional Back     alignment and domain information
>PRK13276 cell wall biosynthesis protein ScdA; Provisional Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3945 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2461 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>COG2461 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5592 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5592 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02862 5L protein; Provisional Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00100 hypA hydrogenase nickel insertion protein HypA Back     alignment and domain information
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1239
2k2c_A137 Solution Nmr Structure Of N-Terminal Domain Of Huma 1e-24
2dkt_A143 Solution Structure Of The Chy Zinc Finger Domain Of 2e-24
2k2d_A79 Solution Nmr Structure Of C-Terminal Domain Of Huma 2e-07
2ecm_A55 Solution Structure Of The Ring Domain Of The Ring F 4e-05
2jrj_A52 Solution Structure Of The Human Pirh2 Ring-H2 Domai 9e-05
2ect_A78 Solution Structure Of The Zinc Finger, C3hc4 Type ( 8e-04
>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 984  EKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGP 1043
            E+   GCEHY R C L+A CC KL+TCR CHD   DH +DR    E+ C+ C K+Q    
Sbjct: 14   ERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQ 73
Query: 1044 VCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAK 1103
             C    CS L   +YYC IC  FD ++  YHC  C +CR+G     DFFHC+ CN CLA 
Sbjct: 74   TCE--ECSTL-FGEYYCDICHLFDKDKKQYHCENCGICRIGP--KEDFFHCLKCNLCLAM 128
Query: 1104 KLVD-HKC 1110
             L   HKC
Sbjct: 129  NLQGRHKC 136
>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143 Back     alignment and structure
>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2c Length = 79 Back     alignment and structure
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55 Back     alignment and structure
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target Ht2b Length = 52 Back     alignment and structure
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1239
2dkt_A143 Ring finger and CHY zinc finger domain- containing 6e-53
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 1e-52
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 2e-14
3u9j_A160 F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i 4e-14
2k2d_A79 Ring finger and CHY zinc finger domain- containing 2e-30
2ecm_A55 Ring finger and CHY zinc finger domain- containing 7e-18
3cax_A369 Uncharacterized protein PF0695; structural genomic 1e-14
3cax_A369 Uncharacterized protein PF0695; structural genomic 5e-09
3cax_A369 Uncharacterized protein PF0695; structural genomic 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
2p0n_A172 Hypothetical protein NMB1532; structural genomics, 8e-10
2p0n_A172 Hypothetical protein NMB1532; structural genomics, 1e-06
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 2e-07
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 4e-07
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 1e-06
2ect_A78 Ring finger protein 126; metal binding protein, st 2e-06
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 4e-06
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 1e-05
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 5e-05
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 6e-05
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 6e-04
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143 Back     alignment and structure
 Score =  181 bits (459), Expect = 6e-53
 Identities = 62/144 (43%), Positives = 77/144 (53%), Gaps = 6/144 (4%)

Query: 975  GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMR 1034
            G S   R+  +   GCEHY R C L+A CC KL+TCR CHD   DH +DR    E+ C+ 
Sbjct: 4    GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCIN 63

Query: 1035 CLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHC 1094
            C K+Q     C    C      +YYC IC  FD ++  YHC  C +CR+  G   DFFHC
Sbjct: 64   CEKLQHAQQTCE--DC-STLFGEYYCSICHLFDKDKRQYHCESCGICRI--GPKEDFFHC 118

Query: 1095 MTCNCCLAKKLVD-HKCREKGLET 1117
            + CN CL   L   HKC E G  +
Sbjct: 119  LKCNLCLTTNLRGKHKCIESGPSS 142
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 Back     alignment and structure
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 Back     alignment and structure
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1239
d2dkta256 g.93.1.1 (A:82-137) RING finger and CHY zinc finge 2e-23
d2dkta174 g.89.1.1 (A:8-81) RING finger and CHY zinc finger 1e-18
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 1e-05
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 8e-05
d3dplr188 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S 0.001
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 0.001
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 0.002
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 0.002
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 0.003
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 0.004
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 Back     information, alignment and structure

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.5 bits (230), Expect = 2e-23
 Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1057 KYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVD-HKCRE 1112
            +YYC IC  FD ++  YHC  C +CR+G     DFFHC+ CN CL   L   HKC E
Sbjct: 2    EYYCSICHLFDKDKRQYHCESCGICRIGPKE--DFFHCLKCNLCLTTNLRGKHKCIE 56
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1239
d2dkta256 RING finger and CHY zinc finger domain-containing 99.69
d2dkta174 RING finger and CHY zinc finger domain-containing 99.17
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.65
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.61
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.47
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.45
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.38
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.29
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.29
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.07
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 97.92
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.89
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 97.6
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.56
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.54
d2c2la280 STIP1 homology and U box-containing protein 1, STU 97.54
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 97.3
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 97.08
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.94
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.7e-18  Score=158.66  Aligned_cols=55  Identities=51%  Similarity=1.290  Sum_probs=52.6

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             41842444576799950147999854458988844212577653224444-3222335
Q 000881         1056 AKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCRE 1112 (1239)
Q Consensus      1056 a~y~C~iC~l~d~~k~~yHC~~C~iCR~g~gl~~~~fHC~~C~~C~s~~l-~~H~C~e 1112 (1239)
                      |+|||+|||||||+|++|||++|||||||++  ++||||++||+|+++++ ++|+|+|
T Consensus         1 G~YfC~iC~l~dddk~~yHC~~CgiCRvG~~--~~ffHC~~C~~C~~~~l~~~H~CiE   56 (56)
T d2dkta2           1 GEYYCSICHLFDKDKRQYHCESCGICRIGPK--EDFFHCLKCNLCLTTNLRGKHKCIE   56 (56)
T ss_dssp             CSEECSSSCCEECSSSEEEETTTTEEEESCG--GGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9657873775468887665999980023588--6643267254643754577852369
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure