Citrus Sinensis ID: 000892
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1236 | 2.2.26 [Sep-21-2011] | |||||||
| Q7TPQ3 | 1674 | E3 ubiquitin-protein liga | yes | no | 0.338 | 0.250 | 0.391 | 9e-87 | |
| Q149N8 | 1683 | E3 ubiquitin-protein liga | yes | no | 0.338 | 0.248 | 0.391 | 1e-86 | |
| Q9FNI6 | 1029 | Putative SWI/SNF-related | no | no | 0.196 | 0.236 | 0.317 | 6e-35 | |
| Q9FIY7 | 1277 | Putative SWI/SNF-related | no | no | 0.208 | 0.202 | 0.313 | 1e-32 | |
| Q6PCN7 | 1003 | Helicase-like transcripti | no | no | 0.228 | 0.281 | 0.307 | 8e-31 | |
| Q9UTL9 | 1375 | Uncharacterized ATP-depen | yes | no | 0.258 | 0.232 | 0.307 | 7e-29 | |
| Q9FF61 | 881 | Putative SWI/SNF-related | no | no | 0.220 | 0.308 | 0.295 | 1e-27 | |
| Q95216 | 1005 | Helicase-like transcripti | no | no | 0.198 | 0.243 | 0.307 | 1e-27 | |
| Q14527 | 1009 | Helicase-like transcripti | no | no | 0.192 | 0.235 | 0.3 | 8e-27 | |
| Q4PGG5 | 1387 | DNA repair protein RAD5 O | N/A | no | 0.335 | 0.299 | 0.244 | 3e-26 |
| >sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1 | Back alignment and function desciption |
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Score = 322 bits (826), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 250/472 (52%), Gaps = 53/472 (11%)
Query: 413 RVECICGAVSE-SRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMT 471
R ECICG + K + VQC C WQHA CV Y + K + +
Sbjct: 649 RFECICGEFDQIGHKPR---VQCLKCHLWQHAKCVNYEEKNLKVKPFY------------ 693
Query: 472 NIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIY 531
C C +E PV+T ATLI+ P+ I QW EI RH R SL+ +Y
Sbjct: 694 ----------CPHCLVAME----PVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVY 739
Query: 532 EGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG--DRRFMRFQKRYPV 589
+G + L DIV+ TYDVL+ +L++ + H D R +R QKRY
Sbjct: 740 QGVKKHGFLQPHF-----LAEQDIVIITYDVLRSELNYVNIPHSNSEDGRRLRNQKRYMA 794
Query: 590 IPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649
IP+ L + WWRICLDEAQMVE A EMA RL +RWCI+GTP+QR L+DL+GL+
Sbjct: 795 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854
Query: 650 FLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEEC 709
FL P+ + WWI ++ PY + + + F +IM RS+K V D++Q+PPQ E
Sbjct: 855 FLGIEPYCVKHWWIRLLYHPYCKKNP---QHLYSFIAKIMWRSAKKDVIDQIQIPPQTEE 911
Query: 710 VSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEA 769
+ WL FSP+E HFY QHE C A ++++ D LK + +
Sbjct: 912 MHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSS-------------LDRRTV 958
Query: 770 AKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMAL 829
+ +L LL+LRQACCHPQ LQ+S ++M+E+L L K E EEA R+LV AL
Sbjct: 959 SSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1018
Query: 830 NGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEIL 881
NGLAGI +I+ + A LY+E + EEH + D L +H HNL E+L
Sbjct: 1019 NGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELL 1070
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E3 ubiquitin-protein ligase involved in DNA repair. Upon genotoxic stress, accepts ubiquitin from the UBE2N-UBE2V2 E2 complex and transfers it to 'Lys-164' of PCNA which had been monoubiquitinated by UBE2A/B-RAD18, promoting the formation of non-canonical poly-ubiquitin chains linked through 'Lys-63'. Mus musculus (taxid: 10090) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1 | Back alignment and function description |
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| >sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RAD5 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1236 | ||||||
| 224127888 | 1320 | chromatin remodeling complex subunit [Po | 0.992 | 0.929 | 0.676 | 0.0 | |
| 359486454 | 1704 | PREDICTED: E3 ubiquitin-protein ligase S | 0.987 | 0.715 | 0.657 | 0.0 | |
| 297736470 | 1717 | unnamed protein product [Vitis vinifera] | 0.973 | 0.700 | 0.623 | 0.0 | |
| 449499151 | 1520 | PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu | 0.997 | 0.811 | 0.611 | 0.0 | |
| 449441236 | 1520 | PREDICTED: E3 ubiquitin-protein ligase S | 0.997 | 0.811 | 0.611 | 0.0 | |
| 240254615 | 1664 | RING-finger, DEAD-like helicase, PHD and | 0.977 | 0.725 | 0.584 | 0.0 | |
| 357490295 | 1764 | ATP-dependent helicase, putative [Medica | 0.987 | 0.691 | 0.582 | 0.0 | |
| 356500801 | 1600 | PREDICTED: E3 ubiquitin-protein ligase S | 0.937 | 0.724 | 0.597 | 0.0 | |
| 297827713 | 1635 | SNF2 domain-containing protein [Arabidop | 0.953 | 0.721 | 0.580 | 0.0 | |
| 255559737 | 1588 | snf2 histone linker phd ring helicase, p | 0.607 | 0.472 | 0.738 | 0.0 |
| >gi|224127888|ref|XP_002329202.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222870983|gb|EEF08114.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1718 bits (4449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 841/1244 (67%), Positives = 994/1244 (79%), Gaps = 17/1244 (1%)
Query: 1 MGRRKQSRPHRSGGVTLENNNTTES--ESNKQKPHGSEQPEKEELADVD-HPFFVEVNRT 57
MGRRKQ+RPHRSGG+ ++NN + E Q+ S + EL +D P+FVEV R
Sbjct: 1 MGRRKQARPHRSGGLIIQNNAAASASAELKNQRKASSSDAQPTELVGIDEQPYFVEVERN 60
Query: 58 CWLLDEHLDISEIVLTDLKLREEFSGFIISEDFYQVSRYTLRLHVCHVNE-FIGRIKLGH 116
W + H D SE+VL L LR+E+S F +++ FY S+Y+LR V +V + + RIKLGH
Sbjct: 61 SWASNHHRDASELVLHGLNLRQEYSSFRVTDGFYHDSKYSLRFRVSNVKQSVLSRIKLGH 120
Query: 117 WPLLSSNDVTLEFVEKCM-EEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLG 175
WP+ SS+D++LE +EK M EE+ E ++ SGSFD PDEGITGLVHL +MEFLTLRP LG
Sbjct: 121 WPVFSSSDISLELIEKSMVEEDREVESVIFSGSFDGPDEGITGLVHLTNMEFLTLRPVLG 180
Query: 176 ITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVS 235
+ FSE M+ LR+RVEIL+ AFDACESLLE++R+ WKKSM+NVM+WLRPEV+TSEARY +
Sbjct: 181 VDFSEKMTPLRMRVEILEKAFDACESLLESTRQIWKKSMMNVMAWLRPEVMTSEARYRHA 240
Query: 236 KSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMLEEDLPDLLPLLRPYQR 295
KS EM+V + +D S S K A FDVA YEAIK SK++PMLE+DLPDLLP LRPYQR
Sbjct: 241 KSTEMEVNMAAEIGDDTSNSGKRAQFDVAGLYEAIKPSKSDPMLEDDLPDLLPTLRPYQR 300
Query: 296 RAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSS 355
RAA+WMVQ+EKG+S SS +ERSQFFSPLCMP+DFLDT S +FYNPFSG++S P+++
Sbjct: 301 RAAHWMVQQEKGES--SSVKERSQFFSPLCMPVDFLDTCSKMFYNPFSGNVSFHPEFSPP 358
Query: 356 YVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVE 415
YV GGILADEMGLGKTVELLACI AHRK SDD + Q T +QK+NL+RLKRERVE
Sbjct: 359 YVSGGILADEMGLGKTVELLACILAHRKSTSDDGSVVAPTWQNTGNQKINLKRLKRERVE 418
Query: 416 CICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVV 475
C+CGAVS+S KY+GLWVQCDICDAWQHADCVGYSPRGKK+ S + +KH R K + V
Sbjct: 419 CVCGAVSDSYKYRGLWVQCDICDAWQHADCVGYSPRGKKKMSVDDEQKH-RNKTTISYVE 477
Query: 476 RDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGAR 535
RDGEH+CQ C ELIE D+P+ATGATLIVCPAPIL QW +EITRHTRPGSLKT +YEG R
Sbjct: 478 RDGEHVCQMCSELIEVADTPIATGATLIVCPAPILPQWHSEITRHTRPGSLKTYVYEGVR 537
Query: 536 NSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLT 595
++SLS+T ++DI +LV ADIVLTTYDVLKEDL HDSDRH GDR +RFQKRYPV PT+LT
Sbjct: 538 DTSLSNTFVVDIGQLVNADIVLTTYDVLKEDLLHDSDRHGGDRHILRFQKRYPVTPTILT 597
Query: 596 RIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655
RIFWWR+CLDEAQMVESNAAAATEMALRL KHRWCITGTPIQRKLDDLYGLLRFLK+SP
Sbjct: 598 RIFWWRVCLDEAQMVESNAAAATEMALRLSTKHRWCITGTPIQRKLDDLYGLLRFLKASP 657
Query: 656 FSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTF 715
F++SRWWI+VIRDPYE D AMEFTHKFFK+IM RSSK+HV+DELQLPPQEECVSWLTF
Sbjct: 658 FNVSRWWIDVIRDPYERRDADAMEFTHKFFKQIMWRSSKIHVADELQLPPQEECVSWLTF 717
Query: 716 SPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNS 775
S IE+HFYQ QHETCV YAREVI KD+++KR VPG S+DA +P+ITHAEAAKLLNS
Sbjct: 718 SAIEKHFYQMQHETCVSYAREVIGSFKDDVVKRKVPGCVSTDASTDPLITHAEAAKLLNS 777
Query: 776 LLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGI 835
LLKLRQACCHPQVGSSGLRSLQQSP++M+EILMV +GK KIEGEEALRKLV+ALN LAGI
Sbjct: 778 LLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVFVGKMKIEGEEALRKLVVALNALAGI 837
Query: 836 ALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATELSQNE 895
A++E+N QAVSLYKEA+A+ EEH EDFRLDPLLNIH+HHNL +IL +V + +TE+ N
Sbjct: 838 AILEQNFPQAVSLYKEALALSEEHLEDFRLDPLLNIHIHHNLADILALVMDHSTEVPSNG 897
Query: 896 QHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFT-DAEDPSGHLSDLSENGFNGDR 954
Q G SEKA KI+ ETCD N K Q+ S E+SDFT DA G+ DLSEN G++
Sbjct: 898 QQLHGNSEKASKINKSETCDLNDAKKQKAS-GEDSDFTIDA----GNSLDLSENCSVGNK 952
Query: 955 KSDCC--VSSSSFDDASLITVCENLKQKYLSGFSVKLSVAQQEFRKSYMQVCNALDDREK 1012
K + +SS+SF L T CEN KQKYLS FS KLS AQ +F KSY QVCNA +R+
Sbjct: 953 KGNNNHDMSSTSFSTQYLRTACENFKQKYLSVFSSKLSAAQLDFNKSYTQVCNAFGERKN 1012
Query: 1013 QYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRSISGLTYHIQSS 1072
++ WWL+AL+HAE NKD + ELIRKIEEA+SG+LN SR+ R ASR RSI+GL YHI +
Sbjct: 1013 LHTVWWLDALNHAEQNKDSTGELIRKIEEAVSGTLNNSRSSRIASRLRSITGLKYHIHTH 1072
Query: 1073 LDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDY 1132
LDQLEASR+TLLDR+LEIDQTM PKEED++R+RHCRIC + DGP CVHCEL+ESFQ+Y
Sbjct: 1073 LDQLEASRQTLLDRILEIDQTMANPKEEDIERVRHCRICQAIDDGPTCVHCELEESFQEY 1132
Query: 1133 EARLFRLKKSQGD-IASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDV 1191
EARLFRL K G I SAEEAV+LQK+NS NR+YW L + KN SS NEE K+R
Sbjct: 1133 EARLFRLNKLHGGIITSAEEAVNLQKRNSERNRYYWNLDRQKKNLLPSSDFNEESKKRKT 1192
Query: 1192 RETVVVSKSPSELEVILGVIKNYCKTQLGREAISASSKQLHILE 1235
ETV+VSKSPSELEVILGVIK+YCK QL EA+SA+S Q+HILE
Sbjct: 1193 GETVMVSKSPSELEVILGVIKSYCKAQLENEAVSAASLQIHILE 1236
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486454|ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297736470|emb|CBI25341.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449499151|ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449441236|ref|XP_004138388.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|240254615|ref|NP_181609.4| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] gi|330254782|gb|AEC09876.1| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357490295|ref|XP_003615435.1| ATP-dependent helicase, putative [Medicago truncatula] gi|355516770|gb|AES98393.1| ATP-dependent helicase, putative [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356500801|ref|XP_003519219.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297827713|ref|XP_002881739.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327578|gb|EFH57998.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|255559737|ref|XP_002520888.1| snf2 histone linker phd ring helicase, putative [Ricinus communis] gi|223540019|gb|EEF41597.1| snf2 histone linker phd ring helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1236 | ||||||
| TAIR|locus:2064786 | 1664 | AT2G40770 [Arabidopsis thalian | 0.753 | 0.559 | 0.592 | 4e-296 | |
| UNIPROTKB|E1C615 | 1682 | SHPRH "Uncharacterized protein | 0.337 | 0.247 | 0.398 | 7.1e-101 | |
| UNIPROTKB|E1C5L6 | 1682 | SHPRH "Uncharacterized protein | 0.337 | 0.247 | 0.398 | 7.1e-101 | |
| MGI|MGI:1917581 | 1674 | Shprh "SNF2 histone linker PHD | 0.304 | 0.224 | 0.417 | 1.6e-99 | |
| UNIPROTKB|E2R8G0 | 1685 | SHPRH "Uncharacterized protein | 0.304 | 0.223 | 0.415 | 1.3e-97 | |
| UNIPROTKB|Q149N8 | 1683 | SHPRH "E3 ubiquitin-protein li | 0.304 | 0.223 | 0.412 | 2.5e-97 | |
| UNIPROTKB|E1BLB1 | 1688 | SHPRH "Uncharacterized protein | 0.304 | 0.222 | 0.422 | 1e-95 | |
| RGD|1310342 | 1701 | Shprh "SNF2 histone linker PHD | 0.304 | 0.221 | 0.397 | 8e-94 | |
| UNIPROTKB|K4DI94 | 1687 | SHPRH "SNF2 histone linker PHD | 0.304 | 0.222 | 0.410 | 4.6e-93 | |
| UNIPROTKB|F1S736 | 1688 | SHPRH "Uncharacterized protein | 0.377 | 0.276 | 0.375 | 1.1e-92 |
| TAIR|locus:2064786 AT2G40770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2843 (1005.8 bits), Expect = 4.0e-296, P = 4.0e-296
Identities = 571/963 (59%), Positives = 701/963 (72%)
Query: 1 MGRRKQSRPHRSGG-VTLXXXXXXXXXXXKQKPHGSEQPEKEELADVDHPFFVEVNRTCW 59
MGRRKQS+P R+ G +T + GS E D+D P++V + +
Sbjct: 1 MGRRKQSKPQRAVGLITPTGSESDRNQLPGDEAEGSGDKNVE---DIDKPYYVNICLSSR 57
Query: 60 LLDE--HLDISEIVLTDLKLREEFSGFIISEDFYQVSR---YTLRLHVCHVNEFIGRIKL 114
+ ++ + D++E+VLT+ +RE +V +LR +C+V F+ RIKL
Sbjct: 58 VSEQQQNFDLAEVVLTNFSVRERVGSSSTFTKPIEVDHDLDCSLRFRLCNVTNFVDRIKL 117
Query: 115 GHWPLLSSNDVTLEFVXXXXXXXXXXXXIMLSGSFDAPDEGITGLVHLASMEFLTLRPTL 174
GHWP+LSS+D+TLE V I S SFD P EG++GL HLAS++FLTLR
Sbjct: 118 GHWPVLSSSDITLELVDNKVSDDEVGSVIW-SASFDGPGEGVSGLAHLASIKFLTLRLMP 176
Query: 175 GITFSEDMSSLRVRVEILKSAFDACESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGV 234
G +E + S RVRVE+L+ AFDAC+SLLEN+R+ WKKSMI+VMSWLRPEV+TSEARYG
Sbjct: 177 G---NEGLLSPRVRVEMLQQAFDACDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYGT 233
Query: 235 SKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPMXXXXXXXXXXXXRPYQ 294
+++ D+E T+++ S K +SFD A FYEAIK SK + M RPYQ
Sbjct: 234 RFNVK-DIESSVVTEDETLDSSKQSSFDAAAFYEAIKPSKTDAMLGDDIADLLPELRPYQ 292
Query: 295 RRAAYWMVQREKGDXXXXXXXXXXXXXXPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTS 354
RRAAYWMVQRE+GD PL + + FLD+ + +F NPFSG++SL+P+Y S
Sbjct: 293 RRAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTPEYFS 352
Query: 355 SYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERV 414
+ GGILADEMGLGKTVELLACIF+HRKPA D+ I + VTD LRRLKRERV
Sbjct: 353 PRIQGGILADEMGLGKTVELLACIFSHRKPAEDE-ISVSNGSSVTDVLNAGLRRLKRERV 411
Query: 415 ECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFEL-KKHTRKK---DM 470
ECICGAVSES KYKG+WVQCD+CDAWQHADCVGYSP+GK ++ + + +K ++KK D
Sbjct: 412 ECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQKKSKKDA 471
Query: 471 TNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCI 530
T I+VR+GE+ICQ C EL++ T SP++TGATLIVCPAPIL QW +EITRHTR GSL TCI
Sbjct: 472 TEIIVREGEYICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLITCI 531
Query: 531 YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590
YEG RN+SLS+ ++DI+EL+ ADIVLTTYDVLKEDL+HD DRH+GDR +RFQKRYPVI
Sbjct: 532 YEGVRNASLSEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVI 591
Query: 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650
PT LTRIFWWRICLDEAQMVESNAAAATEMALRLY KHRWCITGTPIQRKLDDL+GLL+F
Sbjct: 592 PTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKF 651
Query: 651 LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECV 710
LK++PF +SRWWIEVIRDPYE D AMEFTHKFFK++M RSSKVHV+DELQLPPQEECV
Sbjct: 652 LKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQEECV 711
Query: 711 SWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAA 770
SWL FS IEEHFY QH+TCV YAREVI+ LK +ILKR GH SSD NP++THAEAA
Sbjct: 712 SWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKR---GHTSSD---NPLVTHAEAA 765
Query: 771 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALN 830
KLLNSLLKLRQACCHPQVGSSGLRSLQQSP++M+EILMVL+ KT+ EGEEALR L++ALN
Sbjct: 766 KLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLIVALN 825
Query: 831 GLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPLLNIHLHHNLTEILPMVANCATE 890
G+A IA++++ S+AVSLYKEA+++ EEH+EDFRLDPLLNIH+ HNL EILPM + +
Sbjct: 826 GIAAIAMLKQEFSEAVSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKSYGGK 885
Query: 891 LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGF 950
LS + G E KI + A K QR++ E+ +E + +NG
Sbjct: 886 LSAS-----GRPET--KIDVKDDDHHRASKRQRINELESLTHDSSETVHQREAIAPDNGL 938
Query: 951 NGD 953
D
Sbjct: 939 KKD 941
|
|
| UNIPROTKB|E1C615 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C5L6 SHPRH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1917581 Shprh "SNF2 histone linker PHD RING helicase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R8G0 SHPRH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q149N8 SHPRH "E3 ubiquitin-protein ligase SHPRH" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BLB1 SHPRH "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| RGD|1310342 Shprh "SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|K4DI94 SHPRH "SNF2 histone linker PHD RING helicase, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S736 SHPRH "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
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 |
 |
 | CHR938 | chromatin remodeling complex subunit (1320 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1236 | |||
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 1e-38 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 3e-14 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 7e-09 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 4e-05 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 3e-04 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 7e-04 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 0.001 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-38
Identities = 77/300 (25%), Positives = 118/300 (39%), Gaps = 60/300 (20%)
Query: 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVL 557
G TL+VCP L W E + +L+ +Y G M L D+V+
Sbjct: 48 RGPTLVVCPLSTLHNWLNEFEKW--APALRVVVYHGDGRERSKLRQSM-AKRLDTYDVVI 104
Query: 558 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA 617
TTY+VL++D S ++ + W R+ LDEA ++++ +
Sbjct: 105 TTYEVLRKDKKLLSLLNKVE---------------------WDRVVLDEAHRLKNSKSKL 143
Query: 618 TEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPY------- 670
+ +L ++R +TGTPIQ L++L+ LL FL+ PF + + E P
Sbjct: 144 YKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPGPFGSFKVFEEWFNIPIANTADNK 203
Query: 671 ----ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726
E G G HK K + R +K V E LPP+ E V + S + Y+
Sbjct: 204 NKNLEKGKEGINRL-HKLLKPFLLRRTKDDV--EKSLPPKTEHVLYCNLSDEQRKLYK-- 258
Query: 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786
+ L R A N I LLN +++LR+ C HP
Sbjct: 259 ------------KLLTKR---RLALSFAVEGGEKNVGIAS-----LLNLIMQLRKICNHP 298
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1236 | |||
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.91 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.8 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.42 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.36 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.3 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.3 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.28 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.27 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 98.9 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 98.9 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 98.67 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.58 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 98.56 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 98.48 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 98.48 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.36 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 98.32 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.25 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 98.21 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 98.21 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 98.21 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 98.19 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 98.18 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 98.18 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 98.12 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 98.05 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 98.02 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 98.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 98.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 97.99 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 97.97 | |
| PTZ00110 | 545 | helicase; Provisional | 97.96 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 97.93 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 97.91 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 97.88 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 97.85 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 97.82 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 97.76 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 97.73 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 97.72 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 97.68 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 97.68 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 97.68 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 97.58 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 97.56 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 97.55 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 97.51 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 97.42 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 97.35 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 97.19 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 97.16 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.08 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 96.92 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 96.83 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 96.72 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 96.71 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 96.71 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 96.46 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 96.33 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 96.08 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 95.84 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 95.71 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 95.46 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 95.1 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 94.78 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 94.76 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 94.07 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 93.96 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 93.71 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 93.42 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 93.34 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 92.75 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 92.47 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 92.08 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 91.99 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 91.86 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 91.72 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 91.71 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 91.65 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 91.6 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 91.43 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 90.68 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 90.19 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 89.27 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 89.21 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 88.39 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 88.37 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 87.72 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 87.22 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 86.68 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 86.1 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 86.04 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 85.88 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 84.21 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 84.12 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 83.94 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 83.31 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 82.42 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 81.28 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 80.08 |
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-88 Score=828.02 Aligned_cols=1015 Identities=26% Similarity=0.275 Sum_probs=784.4
Q ss_pred CCCCCeEEEEcCcccccc--CCCchhhhhhccccccccc---cceeeecccccccceEEEEEEccccccccceeccCccc
Q 000892 45 DVDHPFFVEVNRTCWLLD--EHLDISEIVLTDLKLREEF---SGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPL 119 (1236)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1236)
+++.|+.++.+-+...+. +..+..++|++.++..+.+ +++..+-+..++..+ +|+.|++.+||.+++.||||+
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vit~~s~l~r~~~~~t~t~~~~~~~~~~~--~~~~~~~~n~v~~~~~~~~~~ 80 (1394)
T KOG0298|consen 3 KKYPLDESMSEDEEYIETWKDLPKNRVIVITKRSPLVRGVLLRTITSHFQIPAAQYG--TLLAYVSDNVVRFYAETYRRN 80 (1394)
T ss_pred CccchhhhhhhhHHHHHHHHhcCCCceEEEecCChhhhcceeeEEeecccchhhhcc--eeEeecchhHHHHHHhhhccc
Confidence 345566666655443332 4788999999999988776 555555555555555 999999999999999999999
Q ss_pred ccCCcchhhhhHhhhccccccceEEeecccCCCCccchhhHhhhhcceEEeeccCCCCcccccccceeeEEeccchhhhh
Q 000892 120 LSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDAC 199 (1236)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~ 199 (1236)
.|+.|++.+++....+.+ +++...++-+|+++.++.++.++...+.+++++-+.+ ........+++.-+...++.|
T Consensus 81 ~s~~d~~~~~~~~k~~~~-~~~es~~~~~~~~~~~~~s~~~~~~~~~~l~~ic~~~---Nq~r~t~~l~~~ki~~s~~s~ 156 (1394)
T KOG0298|consen 81 NSPMDGTVLCEDNKEVPP-ESPESPTLFSYGKKREVFSDNAVEHKGIELILICIPK---NQNRRTRYLKVRKIRQSSGSC 156 (1394)
T ss_pred CCccccceeeccccccCC-CCCCcchHHHhcccccccchHHHHhhcchhhhhcccc---cccccchhhhHHHHhccchhh
Confidence 999999999998887777 8899999999999999999999999999888764322 334455678888889999999
Q ss_pred hhhhhcchHHHHHHHHHHHhhcCCCcCCcccccccccccchhhhcccccccCccccccCCCCCHHHHHHhcccCCCCCCc
Q 000892 200 ESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPML 279 (1236)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~y~~i~~~~~~~~~ 279 (1236)
...+.++.+-|++.|...|.|.++..++....|+..-+... .........+-........+|-..++..+.+.......
T Consensus 157 ~~~lt~t~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~d-~e~~~~l~~~~k~t~~n~~~d~~~~~~~i~~l~~s~~~ 235 (1394)
T KOG0298|consen 157 ILVLTNTQTHVRKRLIREMIVGLQKLTLFFKDFPGSFEFKD-AEQEKVLKFELKTTSTNKLFDALYEKHRITVLVESERS 235 (1394)
T ss_pred hHhhhhhhhhHHHHHHHHHHhcccccccccccCCceeeech-HHHHHHHhhhhhhhhhhhhhhhHHhhhhccccchhccC
Confidence 99999999999999999999999999888777765322111 00001111111122234556766777766654433333
Q ss_pred cCCCCCcCCCChHHHHHHHHHHHHcccCCCCCC------chhhhccccCCCCCcccccCccccceeccCCCCccCCCCCC
Q 000892 280 EEDLPDLLPLLRPYQRRAAYWMVQREKGDSASS------SERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYT 353 (1236)
Q Consensus 280 ~~~~p~L~~~LrpYQ~~aV~WML~RE~~~~~~~------~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~ 353 (1236)
...+....+++|+||.+++.||.+||..-.... ......+..-++-.++.+.+-+..++ .
T Consensus 236 ~D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l~--------------~ 301 (1394)
T KOG0298|consen 236 LDLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEELP--------------K 301 (1394)
T ss_pred chHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccch--------------h
Confidence 333456889999999999999999998543210 11111111111111222211111111 1
Q ss_pred CCCcccceeecCCCcchHHHHHHHHHHhcCCCCCCccccccccccchhhhhHHHhhhhhhhhhhcccccccccccccccc
Q 000892 354 SSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQ 433 (1236)
Q Consensus 354 ~~~vrGGILADEMGLGKTvq~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~cic~~~~~~~~~~g~~v~ 433 (1236)
.+...||.+|||||||||++-+|++..|+.+... ++........|.|+...+...+.+.|++
T Consensus 302 e~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~------------------~~~s~~~~~~~~~~~~~e~~~~r~nq~~ 363 (1394)
T KOG0298|consen 302 ESLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDS------------------YRNSYLHQRLEEYSDEVELKRSRINQKD 363 (1394)
T ss_pred ccCCCcchHHHHhhhHHHHHHHHHHhccCCCccc------------------ccchHHHHHHHHHhhhhHhHHhHhhhhh
Confidence 2234589999999999999999999999877422 2333445567888888888888888888
Q ss_pred ccccccccccc-------ccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhhhccCCCCCCCcEEEEeC
Q 000892 434 CDICDAWQHAD-------CVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCP 506 (1236)
Q Consensus 434 c~~c~~w~h~~-------cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P 506 (1236)
|..|..|+++. |-|..... . -.+........+.|..|.+.....+.+..+|+||||||
T Consensus 364 ~~~~~~~~~~g~~~~~ade~~~qk~~--------------~-~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P 428 (1394)
T KOG0298|consen 364 EVLCSGDKKHGKRVQCADEMGWQKTS--------------E-KLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP 428 (1394)
T ss_pred HHhhcCCccCCcceeehhhhhccchH--------------H-HHHHHHhcccccchhhhhHHHhcccceeecCceEEECc
Confidence 88888887764 22111100 0 01112333455667777787788888899999999999
Q ss_pred CchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccchhhhhhccc
Q 000892 507 APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKR 586 (1236)
Q Consensus 507 ~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kr 586 (1236)
.+++.||-.||.+|+++. ++|+.|.|.++... ..+..+.+||||+|||++|+.++.|+ ...++.|.+|++++
T Consensus 429 ~aIl~QW~~EI~kH~~~~-lKv~~Y~Girk~~~-----~~~~el~~yDIVlTtYdiLr~El~ht--e~~~~~R~lR~qsr 500 (1394)
T KOG0298|consen 429 NAILMQWFEEIHKHISSL-LKVLLYFGIRKTFW-----LSPFELLQYDIVLTTYDILRNELYHT--EDFGSDRQLRHQSR 500 (1394)
T ss_pred HHHHHHHHHHHHHhcccc-ceEEEEechhhhcc-----cCchhhhccCEEEeehHHHHhHhhcc--cccCChhhhhcccC
Confidence 999999999999999854 79999999987653 35588899999999999999999885 56788899999999
Q ss_pred CCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCCChhHHHHHh
Q 000892 587 YPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 666 (1236)
Q Consensus 587 y~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~~~~~F~~~~ 666 (1236)
|+.+++||..+.|||||||||||+.+..|.+++|+.+|++.+||++||||||+ ++|||+||.||+..||+...+|.+.+
T Consensus 501 ~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v 579 (1394)
T KOG0298|consen 501 YMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTV 579 (1394)
T ss_pred CCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCcCCccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000892 667 RDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNIL 746 (1236)
Q Consensus 667 ~~pi~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~ 746 (1236)
..++... .....+..++...++|+.|.+|..++.+||+.+.++++.+++.|.++|+..+..|+.+++..+..++.+.+
T Consensus 580 ~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l 657 (1394)
T KOG0298|consen 580 DKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNL 657 (1394)
T ss_pred HHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhcc
Confidence 8877654 44567889999999999999999999999999999999999999999999999999999998888877654
Q ss_pred hccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhccchh
Q 000892 747 KRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLV 826 (1236)
Q Consensus 747 ~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e~eea~rkvL 826 (1236)
.. ..+.+.+++.....++.+|++|||+||||+++.+++.+.... +++|+|..|+.+...++....|...
T Consensus 658 ~~---------~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ed~~~~~~R~~~ 726 (1394)
T KOG0298|consen 658 DN---------SSDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENTEDECKTELRTLA 726 (1394)
T ss_pred cc---------ccccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhcchhhhHHHHHHH
Confidence 21 122344567778899999999999999999999888776554 8999999999999999999999999
Q ss_pred hhhhhHhhHHHHHHhHhH----HHHHHHHHHHHHHHHHhh-ccCCCCcceeEEecCCcCCcchhhhhhhhhccCCCCceE
Q 000892 827 MALNGLAGIALIEKNLSQ----AVSLYKEAMAVVEEHSED-FRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGC 901 (1236)
Q Consensus 827 ifsq~la~L~iIe~~l~~----a~~~y~~~l~~~~~~~~~-fr~D~~~~lh~~~Nl~dwnp~~d~QA~R~hRiGQ~k~V~ 901 (1236)
..+++++.+..+.+++.. ....|+..+.+..+..++ .-.|...+.|..+++..-....
T Consensus 727 ~~~~~~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~~~~~~~----------------- 789 (1394)
T KOG0298|consen 727 SSKNGLAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLLQASSLA----------------- 789 (1394)
T ss_pred HHhhhhHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhhcccccc-----------------
Confidence 999999999998888874 345566655544333322 1133333334444433100000
Q ss_pred EEEcccCCcccccchhHhhhhccccccCCCcccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 000892 902 SEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKY 981 (1236)
Q Consensus 902 VyRlit~~Tiee~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~y 981 (1236)
+-+......+++..-.+ ...-++....+.+ -.+.--|..++++|
T Consensus 790 ---------~sd~~~~~~~~~~~~~~---------------~s~~~~~~~~d~~------------~~~~~~~q~~~~kl 833 (1394)
T KOG0298|consen 790 ---------PSDRKLTELEHKKYQAQ---------------MSRLEWKYLEDET------------RVLYSLLQDLNEKL 833 (1394)
T ss_pred ---------chhhhHHHHHHHhhhhh---------------hccccchhhchhh------------HHHHHHHHHHHHHH
Confidence 00000001111111110 0000111111111 13667789999999
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhcCccchHHHHHHHHHhhhccccccccccccccccc
Q 000892 982 LSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRS 1061 (1236)
Q Consensus 982 l~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~Ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 1061 (1236)
++++..+...++.+|...+.++.+.++.++.....||++.....+.+.++..+|.. |+.+++.
T Consensus 834 ~s~~~~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLra-----------------i~~~~~~ 896 (1394)
T KOG0298|consen 834 ESVSILKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELRA-----------------IAFRARF 896 (1394)
T ss_pred HHHHhhhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHHH-----------------HHhhhhc
Confidence 99999999999999999999999999999999999999999999999888888762 6778999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCChhhhhhcccccccccCCCCCccccccccchHHHHHHhhhcccc
Q 000892 1062 ISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKK 1141 (1236)
Q Consensus 1062 ~~gL~~~l~~~ld~L~~~R~~~~~~l~~L~~~~~~p~~~~Ve~a~~C~~C~~~~~~~~C~~C~~~~~f~~YE~~LF~~~~ 1141 (1236)
+.+++..|++..++|..++..+..+++++.+.|+.+...++.+...|-.|-...-+|.|.+|.+|..+..|+++.|+.+.
T Consensus 897 i~i~~l~L~~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~~i~~~r~~~~~~ 976 (1394)
T KOG0298|consen 897 IHIMKLKLQNLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDKPIKPKRHRRCRL 976 (1394)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhcccccccccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999887
Q ss_pred cCCCc---ccHHHHHHHHhhhhccchhhcccCCCCCCCCCCCCCchhhcccccccceeEecCCchHHHHHHHHHHHHhhh
Q 000892 1142 SQGDI---ASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQ 1218 (1236)
Q Consensus 1142 ~~~g~---~~~ee~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~se~e~~l~~i~~~~k~~ 1218 (1236)
-.+|. +=++|.+..|.+.++.+-+..++++..+...+| +|..++|.+
T Consensus 977 ~~~~~~~i~~~ce~~~~q~k~~~~~s~~~~l~~~~~~~ekS------------------------------i~~~~~~~~ 1026 (1394)
T KOG0298|consen 977 CLRRKSLILFECELFALQPKEDATVSESLELSSMEKSFEKS------------------------------IIAFLRKKQ 1026 (1394)
T ss_pred hhhhhHHHHHHHHHHhcCccccchhhhhhccchhhhcchhh------------------------------HHHHHHHHH
Confidence 77666 778999999999999997776777666555422 899999999
Q ss_pred hchhHHHhhhhhhhccc
Q 000892 1219 LGREAISASSKQLHILE 1235 (1236)
Q Consensus 1219 ~~~~~~~~~~~~l~~~e 1235 (1236)
+.++...+|++||++|+
T Consensus 1027 l~~e~~~~~t~~~~~l~ 1043 (1394)
T KOG0298|consen 1027 LFSEWKEEATPLLELLS 1043 (1394)
T ss_pred HHHHHHHhcCchHHHHH
Confidence 99999999999999985
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1236 | ||||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 4e-13 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 1e-12 | ||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 9e-07 |
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 5e-27
Identities = 64/299 (21%), Positives = 111/299 (37%), Gaps = 81/299 (27%)
Query: 497 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIV 556
+L++CP +L W+ E+++ P L+ ++ R+ +L DI+
Sbjct: 85 ELTPSLVICPLSVLKNWEEELSKFA-P-HLRFAVFHEDRSKI----------KLEDYDII 132
Query: 557 LTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA 616
LTTY VL D L + W I +DEAQ ++ N
Sbjct: 133 LTTYAVLLRDTR-------------------------LKEVEWKYIVIDEAQNIK-NPQT 166
Query: 617 ATEMALR-LYAKHRWCITGTPIQRKLDDLYGLLRFL------KSSPFSISRWWIEVIRDP 669
A++ L +K+R +TGTPI+ K+DDL+ ++ FL S F P
Sbjct: 167 KIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFK------SKFATP 220
Query: 670 YENGDVGAMEFTHKFFKEIMCRSSK--VHVSDELQLPPQEECVSWLTFSPIEEHFYQSQH 727
+ GD A E + R +K + ++ LP + E + +P + Y++
Sbjct: 221 IKKGDNMAKEELKAIISPFILRRTKYDKAIIND--LPDKIETNVYCNLTPEQAAMYKA-- 276
Query: 728 ETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786
+ + + +L++LLKL+Q HP
Sbjct: 277 -----EVENLFNNIDSVTGIKR-------------------KGMILSTLLKLKQIVDHP 311
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1236 | ||||
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 1e-11 | |
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 3e-04 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 3e-08 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 6e-08 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 1e-04 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 4e-07 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 6e-07 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 2e-06 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 3e-05 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 63.5 bits (153), Expect = 1e-11
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653
L + W I +DEAQ +++ + L +K+R +TGTPI+ K+DDL+ ++ FL
Sbjct: 120 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNP 179
Query: 654 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLP 704
+ P + GD A E + R +K + LP
Sbjct: 180 GLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP 230
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1236 | |||
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.96 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.92 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.8 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.77 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.59 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.34 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.05 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.0 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.94 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.81 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.72 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.67 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 98.59 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.49 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 98.14 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 98.13 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 98.13 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.02 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 97.93 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 97.91 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 97.79 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 97.79 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 97.33 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 97.02 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 96.09 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 95.59 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 94.88 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 94.71 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.69 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 92.76 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 90.24 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 83.05 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 82.61 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 82.04 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 81.79 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 81.65 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 80.91 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=359.83 Aligned_cols=227 Identities=30% Similarity=0.471 Sum_probs=196.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89898578882899999999997100999998311001236788776543476663010257887557988888875464
Q 000892 281 EDLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGG 360 (1236)
Q Consensus 281 ~~~p~L~~~LrPYQ~~aV~WML~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrGG 360 (1236)
.+|++|+.+|||||++||.||+.++.... ||
T Consensus 4 ~~P~~~~~~L~~yQ~~~v~~~~~~~~~~~-------------------------------------------------g~ 34 (230)
T d1z63a1 4 LEPYNIKANLRPYQIKGFSWMRFMNKLGF-------------------------------------------------GI 34 (230)
T ss_dssp CCCCSCSSCCCHHHHHHHHHHHHHHHTTC-------------------------------------------------CE
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHHCCC-------------------------------------------------CE
T ss_conf 69446504506999999999998621699-------------------------------------------------87
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53529886168999999998139999984211222123302356787631111453203554311124652101323534
Q 000892 361 ILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAW 440 (1236)
Q Consensus 361 ILADEMGLGKTie~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~cg~~~~~~~~~g~~v~C~~c~~w 440 (1236)
|||||||||||+++|+++......
T Consensus 35 iLaDe~GlGKT~~~i~~~~~~~~~-------------------------------------------------------- 58 (230)
T d1z63a1 35 CLADDMGLGKTLQTIAVFSDAKKE-------------------------------------------------------- 58 (230)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHT--------------------------------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_conf 998589988699998735544212--------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHC
Q ss_conf 45655576889876540366631013565442202568544320001210168989999389990981178999999843
Q 000892 441 QHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRH 520 (1236)
Q Consensus 441 ~h~~Cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~ 520 (1236)
...+++|||||++++.||.+|+.+|
T Consensus 59 -------------------------------------------------------~~~~~~LIv~p~~l~~~W~~e~~~~ 83 (230)
T d1z63a1 59 -------------------------------------------------------NELTPSLVICPLSVLKNWEEELSKF 83 (230)
T ss_dssp -------------------------------------------------------TCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred -------------------------------------------------------CCCCCCCEECCHHHHHHHHHHHHHH
T ss_conf -------------------------------------------------------3556441105355426777777764
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999719997188766554432100100037669998578886200467777665033432102478730000023212
Q 000892 521 TRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWW 600 (1236)
Q Consensus 521 ~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kr~~~~~s~L~~i~w~ 600 (1236)
+. ...+..+++.... ....+++|+|++|+.+.+.. .+..+.|+
T Consensus 84 ~~--~~~~~~~~~~~~~----------~~~~~~~vvi~~~~~~~~~~-------------------------~l~~~~~~ 126 (230)
T d1z63a1 84 AP--HLRFAVFHEDRSK----------IKLEDYDIILTTYAVLLRDT-------------------------RLKEVEWK 126 (230)
T ss_dssp CT--TSCEEECSSSTTS----------CCGGGSSEEEEEHHHHTTCH-------------------------HHHTCCEE
T ss_pred CC--CCCCEEECCCCCH----------HHCCCCCEEEEEHHHHHHHH-------------------------HHHCCCCE
T ss_conf 02--5441010142100----------00257688985499998688-------------------------87416513
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 05505633246804799999997214719999546888992465511100179999974677988618876886005899
Q 000892 601 RICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEF 680 (1236)
Q Consensus 601 rVILDEAH~iKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~l~~~~~f~~~~~~pi~~g~~~~~~~ 680 (1236)
+||+||||++||+.++.++++..+++.+||+|||||++|++.|||++++||.|++|+++..|...|..++..++....++
T Consensus 127 ~vI~DEah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~ 206 (230)
T d1z63a1 127 YIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEE 206 (230)
T ss_dssp EEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHH
T ss_pred EEEEEHHHCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99997100344322055666544046557997252677678889988876289867899999999844553267789999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999997666413432223568999
Q 000892 681 THKFFKEIMCRSSKVHVSDELQLP 704 (1236)
Q Consensus 681 L~~lL~~imLRRtK~dV~~el~LP 704 (1236)
|+.++++||+||+|.|+.-..+||
T Consensus 207 L~~~l~~~~lRr~K~d~~v~~dLP 230 (230)
T d1z63a1 207 LKAIISPFILRRTKYDKAIINDLP 230 (230)
T ss_dssp HHHHHTTTEECCCTTCHHHHTTSC
T ss_pred HHHHHHCCEEEEECCCCCHHHCCC
T ss_conf 999842337997168861755679
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
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| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
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| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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