Citrus Sinensis ID: 000897

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230----
MGKDVEEGEISDTASVEEISEEDFKIKQEEVVKVVKETKPIKVGGGEAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVASVNSGAAAGKDDKKVVEKVVIDDSGDEIEKEEGELEEGEIELDLESESNEKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP
ccccccccccccccccccccHHHcccccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEcccccccccccHHHHHHHcccccccccccccccccccEEEEEccccHHHHHHHHHHHcEEEEEEcccHHHHHHHHHHHccccccccccEEEccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHHcccEEEccccccccEEEEccccHHHHHHHHHccccEEcHHHHHHHHHHccccccccccccc
cccccccccccccccEEEEEHHHcccccEEEEEEccccccccccccccccHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHEEEccccccccEEEEEcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHcccccccccccccHcccccccccccccccccccccHHcccccccccccccccccccccHcHcccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHccEEEEEEccHHEEEcccccccccccccHccccccccccccccEccccccccEEEEcccHHHHHHHHHHHHHcEEEEcccHHHHHHHHHHHHcccccEcccEEEEcccccccccccccccccccHHHccccccEEEEEEccccccccccccEEEEEEEEEccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccEEEEEccEcccccccccHHHHHHHHHHccEEEccccccEEEEEEcccccHHHHHHHccccEEEcHHHHHHHHHHHHccccccccccc
mgkdveegeisdtasveeiseedfKIKQEEVVKVVKetkpikvgggeAAARVWTMRDLYnkypaicrgygpglhnLAWAQavqnkplnEIFVMEAEqddvskrsspassvasvnsgaaagkddkKVVEKVVIDDsgdeiekeegeleegeieldlesesnEKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELvnennvptkDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIkshepplfssnqIKEMEAMLSSLVTRANdkekdmlamhgvngkdsnivtenavndlnfkekvplpvdslmqnkpleaskpgppgyrsrgvllplldphkvhdvdslpsptrettpsvpvqRALVVGDGMVKSWAAAAKLShnaevhktphyetdALRAFSSYqqkfgrnsffmnselpsptpseesgdgdgdtggeissatavdqpkpvnmptlgqqpvssqpmdisqpmdisSVQALTtannsapassgynpvvkpnpvvkapiksrdprlrfassnalnlnhqpapilhnapkvepvgrvmssrkqktveepvldgpalkrqrngfensgvvrdekniygsggwledtdmfepqiMNRNLlvdsaesnsrkldngatspitsgtpnvvvsgnepapattpsttvslpALLKDIAVNPTMLLNILKMGQQQKLAADAqqksndssmntmhppipssippvsvtcsipsgilskpmdelgkvrmkprdprrvlhgnalqrsgslgpefktdgpsapctqgskeNLNFQkqlgapeakpvlsqsvlqpdiTQQFTKNLKHIADFmsvsqpltsepmvsqnspiqpgqiksgaDMKAVVtnhddkqtgtgsgpeagpvgahpqsawgdvehLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDhtllnsakfhevdpvhDEILRKkeeqdrekphrhlfrfphmgmwtklrpGIWTFLERASKLFEMHLYTMGNKLYATEMakvldpkgvlfagrvisrgddgdpfdgdervpkskdlegvlGMESAVVIIddsvrvwphnkLNLIVVERYtyfpcsrrqfgllgpslleidhdersedgtlasSLGVIERLHKIFFShqslddvdVRNILAAEQRKILAGCRIvfsrvfpvgeanphlhplwqTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTgrfvvhpgwvEASALLYRRAneqdfaikp
mgkdveegeisdtasveeiseedfkikqeevvkvvketkpikvgggeaaarvWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSkrsspassvasvnsgaaagkddkkvvEKVVIddsgdeiekeegeleegeieldlesesneKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMhgvngkdsniVTENAVNDLNFKEKVplpvdslmqnkpleaskpgppgyRSRGVLLPLLDPHKVHDVDSlpsptrettpsvpvQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNsapassgynpvvkpnPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSsrkqktveepvldgpalkrqrngfensgvvrdekniyGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRkldngatspitsgtpnvVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVrmkprdprrvlhgnalqrsgslgpefKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLnsakfhevdpvhdeilrkkeeqdrekphrhlfrfphmgmwtKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVisrgddgdpfdgdervpkskdlegvlGMESAVViiddsvrvwphNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP
MGKDVEEGEISDTASVEEISEEDFkikqeevvkvvketkpikvGGGEAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDvskrsspassvasvnsgaaaGkddkkvvekvviddsgdeiekeegeleegeieldlesesNEKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNselpsptpseesgdgdgdtggeissATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYnpvvkpnpvvkapIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEpapattpsttvslpallKDIAVNPTMLLNILKMGqqqklaadaqqkSNDSSMNTMHppipssippvsvtcsipsGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKlclvldldhtllNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP
*****************************EVVKVVKETKPIKVGGGEAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVM*******************************************************************************LINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLI*******************************************************************************************L***************************QRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFS*Y*******************************************************************************************************************************************************************************KNIYGSGGWLEDTDMFEPQIMN***********************************************SLPALLKDIAVNPTMLLNILKM********************************************************************************************************************************L*HI*****************************************************************DVEHLFE************************FSARKLCLVLDLDHTLLNSAKFHEVDPVH*****************HLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS*********************GVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDH*******TLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRA*********
******E*************EE*****************************VWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVME*********************************************************************************VESIREALESVLRGDISFEGVCSKLEFTLESLR***********DALIQLAFSAVQSVHSVFCSMNHV******EILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDM******************************************************GVLLPLLDPHKVHDVDSL**********VPVQRALVVGDGMVKSWA******************TDALRAFSSYQQKFGRNSFFM***************************************************************************************************************************************************************************************************************************************************V*******************************************************************************************************************************************************************************************************************HLF*******************************CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP
***************VEEISEEDFKIKQEEVVKVVKETKPIKVGGGEAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEA*****************************KVVEKVVIDDSG****************LDLESESNEKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDV**************PVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSE*****************GGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKM*******************NTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPL**********PIQPGQIKSGADMKAVVTNH*******************PQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKK********HRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP
*************ASVEEISEEDFKIKQEEVVKVVKET********EAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFV*******************************************************EGEIELDLESESN***SEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVN************************************SKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSEL******************************PVNMPTLG**P**************************************************DPRLRFASSNALN***********APK**PVGRV********V*EPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRN*******************************************TVSLPALLKDIAVNPTMLLNILKMGQQQK********************************************ELGKVRMKPRDPRRVLHGN*******************************************************************************************************************************WGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPS**********EDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAI**
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MGKDVEEGEISDTASVEEISEEDFKIKQEEVVKVVKETKPIKVGGGEAAARVWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVASVNSGAAAGKDDKKVVEKVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxNEKVSEQVKEEMKLINVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQxxxxxxxxxxxxxxxxxxxxxMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1234 2.2.26 [Sep-21-2011]
Q8LL041241 RNA polymerase II C-termi yes no 0.887 0.882 0.495 0.0
Q00IB6440 RNA polymerase II C-termi no no 0.239 0.672 0.446 2e-71
Q7TSG2 960 RNA polymerase II subunit yes no 0.128 0.165 0.366 7e-21
Q9Y5B0 961 RNA polymerase II subunit yes no 0.122 0.157 0.362 3e-20
Q9P376 723 RNA polymerase II subunit yes no 0.139 0.237 0.333 7e-19
Q03254 732 RNA polymerase II subunit yes no 0.153 0.258 0.288 2e-13
Q8SV03411 RNA polymerase II subunit yes no 0.123 0.372 0.304 4e-11
Q66KM5466 CTD small phosphatase-lik no no 0.151 0.401 0.279 5e-08
Q08BB5469 CTD small phosphatase-lik no no 0.176 0.464 0.267 5e-08
Q801R4466 CTD small phosphatase-lik N/A no 0.151 0.401 0.279 5e-08
>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2 Back     alignment and function desciption
 Score = 1004 bits (2595), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1251 (49%), Positives = 772/1251 (61%), Gaps = 156/1251 (12%)

Query: 52   VWTMRDLYNKYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVA 111
            VWTM +L ++YPA       GL NLAWA+AVQNKP NE  VM+ E         P  S  
Sbjct: 79   VWTMEELISQYPAYRPYANSGLSNLAWARAVQNKPFNEGLVMDYE---------PRES-- 127

Query: 112  SVNSGAAAGKDDKKVVEKVVIDDSGDE----------IEKEEGELEEGEIELDLESE--- 158
                            +K+VI+DS DE          I+  +   ++  +E D ES    
Sbjct: 128  ----------------DKIVIEDSDDEKEEGELEEGEIDLVDNASDDNLVEKDTESVVLI 171

Query: 159  SNEKVSEQ--VKEEMKLINVESIREALES--VLRGDISFEGVCSKLEFTLESLRELVNEN 214
            S +KV +   +KE      V+ IR  LES  ++     FEGVCS++   LESLRELV++N
Sbjct: 172  SADKVEDDRILKERDLEKKVKLIRGVLESTSLVEAQTGFEGVCSRILGALESLRELVSDN 231

Query: 215  N-VPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIK 273
            +  P +D L+QL+F+++Q+++ VFCSMN++ KE+NKE +SRLL+L+  H     S NQ  
Sbjct: 232  DDFPKRDTLVQLSFASLQTINYVFCSMNNISKERNKETMSRLLTLVNDHFSQFLSFNQKN 291

Query: 274  EMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNK- 332
            E+E M         D  +  +A+      + N      VN +      P   DS +  K 
Sbjct: 292  EIETM-------NQDLSRSAIAVFAGTSSEEN------VNQMT----QPSNGDSFLAKKL 334

Query: 333  PLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSW 392
              E++  G    RSR  +LPLLD HK HD DSLPSPTRETTPS+PV         MV+  
Sbjct: 335  TSESTHRGAAYLRSRLPMLPLLDLHKDHDADSLPSPTRETTPSLPVNGR----HTMVRPG 390

Query: 393  AAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDT 452
                + S   E  K   YE+DA +A S+YQQKFG NS F   +LPSPTPS E  DG+GD 
Sbjct: 391  FPVGRESQTTEGAKVYSYESDARKAVSTYQQKFGLNSVFKTDDLPSPTPSGEPNDGNGDV 450

Query: 453  GGEISSATAV------------DQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTA 500
            GGE+SS+               D P P N  +    PV++       P  +S + A+   
Sbjct: 451  GGEVSSSVVKSSNPGSHLIYGQDVPLPSNFNSRSM-PVANSVSSTVPPHHLS-IHAI--- 505

Query: 501  NNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLN--HQPAPILHNAPKVEPV 558
              SAP +S        +  VK   KSRDPRLR A  +A N+      +    N  KVE  
Sbjct: 506  --SAPTAS--------DQTVKPSAKSRDPRLRLAKPDAANVTIYSYSSGDARNLSKVELS 555

Query: 559  GRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMN 618
              +++ RKQK  +E ++DGPA KRQ++         D     G+GGWLEDT+       +
Sbjct: 556  ADLVNPRKQKAADEFLIDGPAWKRQKSD-------TDAPKAAGTGGWLEDTE-------S 601

Query: 619  RNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNP 678
              LL    ES  R ++NG TS  +S  P   VS ++    T  + T SL +LLKDIAVNP
Sbjct: 602  SGLL--KLESKPRLIENGVTSMTSSVMPTSAVSVSQKV-RTASTDTASLQSLLKDIAVNP 658

Query: 679  TMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIP----------- 727
            TMLLN+LKMG++QK+   A QK  D        P  S  P VS   SIP           
Sbjct: 659  TMLLNLLKMGERQKVPEKAIQKPMDPR-RAAQLPGSSVQPGVSTPLSIPASNALAANSLN 717

Query: 728  SGIL-----SKPMDELGKVRMKPRDPRRVLHGNALQRS-GSLGPEFKTDGPSAPCT---Q 778
            SG+L     + P  E G +RMKPRDPRR+LHG+ LQR+  S+  + K + PS   T   +
Sbjct: 718  SGVLQDSSQNAPAAESGSIRMKPRDPRRILHGSTLQRTDSSMEKQTKVNDPSTLGTLTMK 777

Query: 779  GSKENLNFQKQLGAPE-------AKPVLSQSVLQ---PDITQQFTKNLKHIADFMSVSQP 828
            G  E+L    QL   +       +K  +S  +L    PD + QFTKNLK IAD + VSQ 
Sbjct: 778  GKAEDLETPPQLDPRQNISQNGTSKMKISGELLSGKTPDFSTQFTKNLKSIADMVVVSQQ 837

Query: 829  LTSEPMVSQNSPIQPGQIKSGADMKAVVTN-----HDDKQTGTGSGPEAGPVGAHPQSAW 883
            L + P     + +   Q+K+  D+K   +N      D   +       AGP  +   ++W
Sbjct: 838  LGNPP-----ASMHSVQLKTERDVKHNPSNPNAQDEDVSVSAASVTAAAGPTRS--MNSW 890

Query: 884  GDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPV 943
            GDVEHLFEGYDD Q+ AIQ+ER RRLEEQ KMF+++KL LVLD+DHTLLNSAKF+EV+  
Sbjct: 891  GDVEHLFEGYDDIQRVAIQRERVRRLEEQNKMFASQKLSLVLDIDHTLLNSAKFNEVESR 950

Query: 944  HDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYA 1003
            H+EILRKKEEQDREKP+RHLFRF HMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNKLYA
Sbjct: 951  HEEILRKKEEQDREKPYRHLFRFLHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYA 1010

Query: 1004 TEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVW 1063
            TEMAK+LDPKGVLF GRVIS+GDDGDP DGDERVPKSKDLEGV+GMES+VVIIDDSVRVW
Sbjct: 1011 TEMAKLLDPKGVLFNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVW 1070

Query: 1064 PHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFS 1123
            P +K+NLI VERY YFPCSRRQFGLLGPSLLE+D DE  E+GTLASSL VIE++H+ FFS
Sbjct: 1071 PQHKMNLIAVERYLYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFS 1130

Query: 1124 HQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHID 1183
            H SLD+VDVRNILA+EQRKILAGCRIVFSR+ PVGEA PHLHPLWQTAEQFGAVCT  +D
Sbjct: 1131 HTSLDEVDVRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVD 1190

Query: 1184 DQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP 1234
            + VTHVV NSLGTDKVNWAL+ GRFVVHPGWVEASA LY+RANE  +AI P
Sbjct: 1191 EHVTHVVTNSLGTDKVNWALTRGRFVVHPGWVEASAFLYQRANENLYAINP 1241
Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated signaling pathway and cold resistance.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1 Back     alignment and function description
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3 Back     alignment and function description
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcp1 PE=1 SV=1 Back     alignment and function description
>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1 Back     alignment and function description
>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1 SV=1 Back     alignment and function description
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis GN=ctdspl2 PE=2 SV=1 Back     alignment and function description
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a PE=2 SV=1 Back     alignment and function description
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis GN=ctdspl2-a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1234
3594737741238 PREDICTED: RNA polymerase II C-terminal 0.950 0.947 0.575 0.0
2240535531117 predicted protein [Populus trichocarpa] 0.870 0.961 0.587 0.0
2960881691184 unnamed protein product [Vitis vinifera] 0.880 0.918 0.548 0.0
3565237181244 PREDICTED: RNA polymerase II C-terminal 0.963 0.955 0.527 0.0
4494874511249 PREDICTED: LOW QUALITY PROTEIN: RNA poly 0.948 0.937 0.538 0.0
4494457821249 PREDICTED: RNA polymerase II C-terminal 0.948 0.937 0.538 0.0
3565671921221 PREDICTED: RNA polymerase II C-terminal 0.951 0.961 0.528 0.0
2555431741195 RNA polymerase II ctd phosphatase, putat 0.739 0.763 0.625 0.0
3575027111213 RNA polymerase II C-terminal domain phos 0.922 0.938 0.496 0.0
565477171227 putative transcription regulator CPL1 [S 0.931 0.936 0.491 0.0
>gi|359473774|ref|XP_002266931.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1295 bits (3351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 743/1290 (57%), Positives = 886/1290 (68%), Gaps = 117/1290 (9%)

Query: 1    MG-KDVEEGEISDTASVEEISEEDFKIKQEEVVKVVKETKPIKVGGGEAAARVWTMRDLY 59
            MG +DVEEGEISD+ASVEEISEEDF  KQE  V+V++E KP      +A  RVWTMRDL 
Sbjct: 10   MGIEDVEEGEISDSASVEEISEEDFN-KQE--VRVLREAKP------KADTRVWTMRDLQ 60

Query: 60   N--KYPAICRGYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVASVNSGA 117
            +  KY   C GY P L+NLAWAQAVQNKPLN+IFVM+ E+   S  SS  S   S ++  
Sbjct: 61   DLYKYHQACSGYTPRLYNLAWAQAVQNKPLNDIFVMDDEESKRSSSSSNTSRDDSSSA-- 118

Query: 118  AAGKDDKKVVEKVVIDDSGDEIEKEEGELEEGEIE------LDLESESNEK-------VS 164
                   K V KV+IDDSGDE++ +  ++ E E        +DL+SE + K       V+
Sbjct: 119  -------KEVAKVIIDDSGDEMDVKMDDVSEKEEGELEEGEIDLDSEPDVKDEGGVLDVN 171

Query: 165  E---QVKEEMKLINVESIREALESV--LRGDISFEGVCSKLEFTLESLREL-----VNEN 214
            E    +KE   +  V+SI+E LESV  +  + SF GVCS+L+ TL SL+++     V E+
Sbjct: 172  EPEIDLKERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNTLGSLQKVFGEKVVGES 231

Query: 215  NVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKE 274
            +VPTKDAL Q   +A+++++ VFCSMN   KE NK++ SRLLS ++  + P+FS   IKE
Sbjct: 232  SVPTKDALAQQLINAIRALNHVFCSMNSNQKELNKDVFSRLLSCVECGDSPIFSIQHIKE 291

Query: 275  MEAMLSSLVT-------RANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPL---P 324
            +E M+S L T        A+DK  D+    G+N    +   E++       +K+ L    
Sbjct: 292  VEVMMSFLDTPAAQSSAEASDKVNDVQVTDGMNRNILDSSVESSGRAFASAKKLSLDSIS 351

Query: 325  VDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVV 384
            V+S  QN P +A KPG    R R +  PLLD HK HD DSLPSPT +     PV ++ +V
Sbjct: 352  VESYNQNNP-DALKPGLSSSRGRFIFGPLLDLHKDHDEDSLPSPTGKAPQCFPVNKSELV 410

Query: 385  GDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEE 444
                       AK++H  +      YETDAL+A S+YQQKFG  SF    +LPSPTPSEE
Sbjct: 411  ----------TAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEE 460

Query: 445  SGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSA 504
            SGD  GD  GE+SS++ +  P   N P LG   VSS P      MD S VQ  T   N++
Sbjct: 461  SGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAPQ-----MDSSIVQGPTVGRNTS 515

Query: 505  PASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNA--LNLNHQPAPILHNAPKVEPVGRVM 562
              SSG  P +  + V  A  KSRDPRLR ASS+A  L+LN +P P + N+PKV+P+G ++
Sbjct: 516  LVSSG--PHLDSSVVASA--KSRDPRLRLASSDAGSLDLNERPLPAVSNSPKVDPLGEIV 571

Query: 563  SSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLL 622
            SSRKQK+ EEP+LDGP  KRQRNG  +   VRD + +  SGGWLED++   PQ+MNRN L
Sbjct: 572  SSRKQKSAEEPLLDGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSNTVIPQMMNRNQL 631

Query: 623  VDSAESNSRKLDNGAT-SPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTML 681
            +++  ++ +KL++  T + I    P V V+GNE  P    STT SL +LLKDIAVNP + 
Sbjct: 632  IENTGTDPKKLESKVTVTGIGCDKPYVTVNGNEHLPVVATSTTASLQSLLKDIAVNPAVW 691

Query: 682  LNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSI----PPVSVTCSIPSGILSKP--- 734
            +NI    +QQK        S D + NT+ PP  +SI    PP SV    PS +  KP   
Sbjct: 692  MNIFNKVEQQK--------SGDPAKNTVLPPTSNSILGVVPPASVAPLKPSALGQKPAGA 743

Query: 735  --------MDELGKVRMKPRDPRRVLHGNALQRSGSLGPE-FKTDGPSAPCTQGSKENLN 785
                    MDE GKVRMKPRDPRR+LH N+ QRSGS G E FKT               N
Sbjct: 744  LQVPQTGPMDESGKVRMKPRDPRRILHANSFQRSGSSGSEQFKT---------------N 788

Query: 786  FQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQ 845
             QKQ    E K V S SV  PDI+QQFTKNLK+IAD MS SQ  +  P   Q    Q  Q
Sbjct: 789  AQKQEDQTETKSVPSHSVNPPDISQQFTKNLKNIADLMSASQASSMTPTFPQILSSQSVQ 848

Query: 846  IKSG-ADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKE 904
            + +   D+KA V++  D+ T  GS PE+       ++ WGDVEHLF+GYDDQQKAAIQ+E
Sbjct: 849  VNTDRMDVKATVSDSGDQLTANGSKPESAAGPPQSKNTWGDVEHLFDGYDDQQKAAIQRE 908

Query: 905  RTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLF 964
            R RR+EEQKKMFSARKLCLVLDLDHTLLNSAKF EVDPVHDEILRKKEEQDREK  RHLF
Sbjct: 909  RARRIEEQKKMFSARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKSQRHLF 968

Query: 965  RFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISR 1024
            RFPHMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNKLYATEMAKVLDPKGVLFAGRVIS+
Sbjct: 969  RFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISK 1028

Query: 1025 GDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRR 1084
            GDDGD  DGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRR
Sbjct: 1029 GDDGDVLDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRR 1088

Query: 1085 QFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKIL 1144
            QFGL GPSLLEIDHDER EDGTLASSL VIER+H+ FFS+++LD+VDVRNILA+EQRKIL
Sbjct: 1089 QFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHQSFFSNRALDEVDVRNILASEQRKIL 1148

Query: 1145 AGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALS 1204
            AGCRIVFSRVFPVGEANPHLHPLWQTAE FGAVCT  ID+QVTHVVANSLGTDKVNWALS
Sbjct: 1149 AGCRIVFSRVFPVGEANPHLHPLWQTAESFGAVCTNQIDEQVTHVVANSLGTDKVNWALS 1208

Query: 1205 TGRFVVHPGWVEASALLYRRANEQDFAIKP 1234
            TGRFVVHPGWVEASALLYRRANEQDFAIKP
Sbjct: 1209 TGRFVVHPGWVEASALLYRRANEQDFAIKP 1238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224053553|ref|XP_002297869.1| predicted protein [Populus trichocarpa] gi|222845127|gb|EEE82674.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296088169|emb|CBI35661.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523718|ref|XP_003530482.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449487451|ref|XP_004157633.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445782|ref|XP_004140651.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567192|ref|XP_003551805.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|255543174|ref|XP_002512650.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis] gi|223548611|gb|EEF50102.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357502711|ref|XP_003621644.1| RNA polymerase II C-terminal domain phosphatase-like protein [Medicago truncatula] gi|355496659|gb|AES77862.1| RNA polymerase II C-terminal domain phosphatase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|56547717|gb|AAV92930.1| putative transcription regulator CPL1 [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1234
TAIR|locus:20511641241 CPL3 "C-terminal domain phosph 0.401 0.399 0.648 8.8e-224
TAIR|locus:4010714056440 CPL4 "C-terminal domain phosph 0.212 0.595 0.468 1.6e-59
DICTYBASE|DDB_G0271690 782 DDB_G0271690 "putative RNA pol 0.108 0.171 0.342 8.5e-26
WB|WBGene00009479 659 fcp-1 [Caenorhabditis elegans 0.213 0.400 0.317 1.9e-23
TAIR|locus:2045044277 AT2G04930 [Arabidopsis thalian 0.120 0.537 0.391 2.3e-22
TAIR|locus:2162565306 AT5G54210 [Arabidopsis thalian 0.138 0.558 0.364 1e-21
TAIR|locus:2194656221 AT1G43600 [Arabidopsis thalian 0.122 0.683 0.389 1.3e-21
TAIR|locus:2012943342 AT1G20320 [Arabidopsis thalian 0.125 0.453 0.396 5.6e-21
TAIR|locus:2194666255 AT1G43610 [Arabidopsis thalian 0.123 0.596 0.392 7.2e-21
TAIR|locus:2090467296 AT3G17550 [Arabidopsis thalian 0.128 0.537 0.375 9.2e-21
TAIR|locus:2051164 CPL3 "C-terminal domain phosphatase-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1677 (595.4 bits), Expect = 8.8e-224, Sum P(3) = 8.8e-224
 Identities = 336/518 (64%), Positives = 393/518 (75%)

Query:   734 PMDELGKVRMKPRDPRRVLHGNALQRS-GSLGPEFKTDGPSAPCT---QGSKENLNFQKQ 789
             P  E G +RMKPRDPRR+LHG+ LQR+  S+  + K + PS   T   +G  E+L    Q
Sbjct:   729 PAAESGSIRMKPRDPRRILHGSTLQRTDSSMEKQTKVNDPSTLGTLTMKGKAEDLETPPQ 788

Query:   790 LGAPE-------AKPVLSQSVLQ---PDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNS 839
             L   +       +K  +S  +L    PD + QFTKNLK IAD + VSQ L + P  S +S
Sbjct:   789 LDPRQNISQNGTSKMKISGELLSGKTPDFSTQFTKNLKSIADMVVVSQQLGNPP-ASMHS 847

Query:   840 PIQPGQIKSGADMKAVVTNHD--DKQTGTGSGPEAGPVG-AHPQSAWGDVEHLFEGYDDQ 896
                  Q+K+  D+K   +N +  D+     +       G     ++WGDVEHLFEGYDD 
Sbjct:   848 V----QLKTERDVKHNPSNPNAQDEDVSVSAASVTAAAGPTRSMNSWGDVEHLFEGYDDI 903

Query:   897 QKAAIQKERTRRLEEQKKMFSARKXXXXXXXXXXXXNSAKFHEVDPVHDEILRKKEEQDR 956
             Q+ AIQ+ER RRLEEQ KMF+++K            NSAKF+EV+  H+EILRKKEEQDR
Sbjct:   904 QRVAIQRERVRRLEEQNKMFASQKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDR 963

Query:   957 EKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVL 1016
             EKP+RHLFRF HMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNKLYATEMAK+LDPKGVL
Sbjct:   964 EKPYRHLFRFLHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKGVL 1023

Query:  1017 FAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERY 1076
             F GRVIS+GDDGDP DGDERVPKSKDLEGV+GMES+VVIIDDSVRVWP +K+NLI VERY
Sbjct:  1024 FNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERY 1083

Query:  1077 TYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNIL 1136
              YFPCSRRQFGLLGPSLLE+D DE  E+GTLASSL VIE++H+ FFSH SLD+VDVRNIL
Sbjct:  1084 LYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVDVRNIL 1143

Query:  1137 AAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT 1196
             A+EQRKILAGCRIVFSR+ PVGEA PHLHPLWQTAEQFGAVCT  +D+ VTHVV NSLGT
Sbjct:  1144 ASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGT 1203

Query:  1197 DKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP 1234
             DKVNWAL+ GRFVVHPGWVEASA LY+RANE  +AI P
Sbjct:  1204 DKVNWALTRGRFVVHPGWVEASAFLYQRANENLYAINP 1241
GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0008420 "CTD phosphatase activity" evidence=ISS
GO:0008022 "protein C-terminus binding" evidence=IPI
GO:0009651 "response to salt stress" evidence=IEP
GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
TAIR|locus:4010714056 CPL4 "C-terminal domain phosphatase-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271690 DDB_G0271690 "putative RNA polymerase II C-terminal domain phosphatase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00009479 fcp-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2045044 AT2G04930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162565 AT5G54210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194656 AT1G43600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012943 AT1G20320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194666 AT1G43610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090467 AT3G17550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LL04CPL3_ARATH3, ., 1, ., 3, ., 1, 60.49560.88730.8823yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.160.914
3rd Layer3.1.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_I7873
hypothetical protein (1117 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1234
TIGR02250156 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph 7e-63
smart00577148 smart00577, CPDc, catalytic domain of ctd-like pho 7e-48
pfam03031153 pfam03031, NIF, NLI interacting factor-like phosph 2e-24
TIGR02251162 TIGR02251, HIF-SF_euk, Dullard-like phosphatase do 2e-09
COG5190390 COG5190, FCP1, TFIIF-interacting CTD phosphatases, 1e-07
smart0029278 smart00292, BRCT, breast cancer carboxy-terminal d 3e-07
pfam0053377 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain 2e-06
cd0002772 cd00027, BRCT, Breast Cancer Suppressor Protein (B 8e-06
pfam1273863 pfam12738, PTCB-BRCT, twin BRCT domain 4e-04
>gnl|CDD|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain Back     alignment and domain information 
 Score =  210 bits (536), Expect = 7e-63
 Identities = 72/168 (42%), Positives = 94/168 (55%), Gaps = 15/168 (8%)

Query: 915  MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMW-- 972
            +   +KL LVLDLD TL+++ K   +           EE + E   R L +F    MW  
Sbjct: 1    LLREKKLHLVLDLDQTLIHTTKDPTLSEWEKY---DIEEPNSE-TRRDLRKFNLGTMWYL 56

Query: 973  TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFD 1032
            TKLRP +  FL+ ASKL+EMH+YTMG + YA  +AK++DP G  F  R+ISR + G    
Sbjct: 57   TKLRPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGS--- 113

Query: 1033 GDERVPKSKDLEGVLG-MESAVVIIDDSVRVWPHNKLNLIVVERYTYF 1079
                 P +K L  +    ES VVIIDD   VWP +K NLI +E Y YF
Sbjct: 114  -----PHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYNYF 156

This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156
>gnl|CDD|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases Back     alignment and domain information
>gnl|CDD|217328 pfam03031, NIF, NLI interacting factor-like phosphatase Back     alignment and domain information
>gnl|CDD|233801 TIGR02251, HIF-SF_euk, Dullard-like phosphatase domain Back     alignment and domain information
>gnl|CDD|227517 COG5190, FCP1, TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain Back     alignment and domain information
>gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain Back     alignment and domain information
>gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>gnl|CDD|193214 pfam12738, PTCB-BRCT, twin BRCT domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1234
KOG0323 635 consensus TFIIF-interacting CTD phosphatases, incl 100.0
TIGR02250156 FCP1_euk FCP1-like phosphatase, phosphatase domain 100.0
KOG1605262 consensus TFIIF-interacting CTD phosphatase, inclu 100.0
TIGR02251162 HIF-SF_euk Dullard-like phosphatase domain. This d 99.97
PF03031159 NIF: NLI interacting factor-like phosphatase; Inte 99.96
TIGR02245195 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase 99.94
KOG2832393 consensus TFIIF-interacting CTD phosphatase, inclu 99.88
smart00577148 CPDc catalytic domain of ctd-like phosphatases. 99.84
COG5190390 FCP1 TFIIF-interacting CTD phosphatases, including 99.8
COG5190390 FCP1 TFIIF-interacting CTD phosphatases, including 99.49
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 99.37
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 99.29
KOG3226 508 consensus DNA repair protein [Replication, recombi 99.24
smart0029280 BRCT breast cancer carboxy-terminal domain. 99.14
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 99.11
KOG0323635 consensus TFIIF-interacting CTD phosphatases, incl 99.08
PLN03122 815 Poly [ADP-ribose] polymerase; Provisional 98.41
PLN03123 981 poly [ADP-ribose] polymerase; Provisional 98.35
KOG1929 811 consensus Nucleotide excision repair factor NEF2, 98.06
KOG1929 811 consensus Nucleotide excision repair factor NEF2, 97.66
KOG3524 850 consensus Predicted guanine nucleotide exchange fa 97.47
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 97.43
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 97.41
PRK06063313 DNA polymerase III subunit epsilon; Provisional 97.41
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 97.4
cd01427139 HAD_like Haloacid dehalogenase-like hydrolases. Th 97.38
PRK06195309 DNA polymerase III subunit epsilon; Validated 97.24
COG0272667 Lig NAD-dependent DNA ligase (contains BRCT domain 97.21
KOG3548 1176 consensus DNA damage checkpoint protein RHP9/CRB2/ 97.01
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 97.01
TIGR01684301 viral_ppase viral phosphatase. These proteins also 96.89
TIGR01681128 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily 96.86
KOG0966 881 consensus ATP-dependent DNA ligase IV [Replication 96.79
PHA03398303 viral phosphatase superfamily protein; Provisional 96.74
TIGR01685174 MDP-1 magnesium-dependent phosphatase-1. This mode 96.6
KOG2043 896 consensus Signaling protein SWIFT and related BRCT 96.6
TIGR01662132 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I 96.44
KOG4362 684 consensus Transcriptional regulator BRCA1 [Replica 96.17
KOG2481 570 consensus Protein required for normal rRNA process 96.09
PHA02530300 pseT polynucleotide kinase; Provisional 96.03
TIGR01261161 hisB_Nterm histidinol-phosphatase. This model desc 96.01
COG5275276 BRCT domain type II [General function prediction o 95.93
TIGR01664166 DNA-3'-Pase DNA 3'-phosphatase. The central phosph 95.88
PF05152297 DUF705: Protein of unknown function (DUF705); Inte 95.86
TIGR01686320 FkbH FkbH-like domain. The C-terminal portion of t 95.8
TIGR01672237 AphA HAD superfamily (subfamily IIIB) phosphatase, 95.74
COG5163 591 NOP7 Protein required for biogenesis of the 60S ri 95.64
PRK08942181 D,D-heptose 1,7-bisphosphate phosphatase; Validate 95.63
TIGR01533266 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil 95.62
TIGR01656147 Histidinol-ppas histidinol-phosphate phosphatase f 95.51
TIGR00213176 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase 94.96
COG4996164 Predicted phosphatase [General function prediction 94.89
PF12689169 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 94.63
PRK11009237 aphA acid phosphatase/phosphotransferase; Provisio 93.98
PF13419176 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 93.11
TIGR02253221 CTE7 HAD superfamily (subfamily IA) hydrolase, TIG 93.1
KOG3524 850 consensus Predicted guanine nucleotide exchange fa 92.9
PRK05446354 imidazole glycerol-phosphate dehydratase/histidino 92.89
PRK08238 479 hypothetical protein; Validated 92.65
TIGR01689126 EcbF-BcbF capsule biosynthesis phosphatase. Due to 91.94
TIGR01663526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 91.49
PF08645159 PNK3P: Polynucleotide kinase 3 phosphatase; InterP 91.13
TIGR02254224 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase 90.69
TIGR01449213 PGP_bact 2-phosphoglycolate phosphatase, prokaryot 90.66
TIGR01509183 HAD-SF-IA-v3 haloacid dehalogenase superfamily, su 90.22
TIGR01668170 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph 90.04
PLN02770248 haloacid dehalogenase-like hydrolase family protei 89.89
PRK13288214 pyrophosphatase PpaX; Provisional 89.49
TIGR01428198 HAD_type_II 2-haloalkanoic acid dehalogenase, type 89.35
TIGR01454205 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes 89.34
PLN03243260 haloacid dehalogenase-like hydrolase; Provisional 88.94
PRK13222226 phosphoglycolate phosphatase; Provisional 88.82
TIGR01993184 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These 88.62
PRK06769173 hypothetical protein; Validated 88.44
PRK09449224 dUMP phosphatase; Provisional 87.97
TIGR01422253 phosphonatase phosphonoacetaldehyde hydrolase. Thi 87.03
PF13344101 Hydrolase_6: Haloacid dehalogenase-like hydrolase; 86.88
TIGR01459242 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas 86.4
PRK00192273 mannosyl-3-phosphoglycerate phosphatase; Reviewed 86.31
TIGR01489188 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent 86.06
PRK10563221 6-phosphogluconate phosphatase; Provisional 85.9
PF08282254 Hydrolase_3: haloacid dehalogenase-like hydrolase; 85.75
COG2503274 Predicted secreted acid phosphatase [General funct 85.54
COG2179175 Predicted hydrolase of the HAD superfamily [Genera 84.94
COG0561264 Cof Predicted hydrolases of the HAD superfamily [G 84.55
TIGR00338219 serB phosphoserine phosphatase SerB. Phosphoserine 84.13
PRK11587218 putative phosphatase; Provisional 84.09
PRK14988224 GMP/IMP nucleotidase; Provisional 83.94
TIGR03333214 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl 83.86
PRK13226229 phosphoglycolate phosphatase; Provisional 83.8
PRK10826222 2-deoxyglucose-6-phosphatase; Provisional 83.62
COG1011229 Predicted hydrolase (HAD superfamily) [General fun 83.42
TIGR01456321 CECR5 HAD-superfamily class IIA hydrolase, TIGR014 82.57
TIGR01670154 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho 82.57
PRK13223272 phosphoglycolate phosphatase; Provisional 82.49
TIGR01675229 plant-AP plant acid phosphatase. This model explic 82.42
PRK10725188 fructose-1-P/6-phosphogluconate phosphatase; Provi 82.29
PLN02575381 haloacid dehalogenase-like hydrolase 81.94
TIGR01487215 SPP-like sucrose-phosphate phosphatase-like hydrol 81.62
TIGR02461225 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat 81.61
TIGR02463221 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r 81.09
TIGR02009185 PGMB-YQAB-SF beta-phosphoglucomutase family hydrol 80.25
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-47  Score=446.81  Aligned_cols=337  Identities=36%  Similarity=0.544  Sum_probs=273.7

Q ss_pred             cccccchhhcccchhHHHHhhHHHHhhhHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcc
Q 000897          882 AWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHR  961 (1234)
Q Consensus       882 ~~~~fd~L~~g~~~~q~a~i~re~akrL~~Q~kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~  961 (1234)
                      ..+.|+++..+++..+...   ...+++..+..++..++|+||+|||+||+|+.....+...  +.+.. ++......+.
T Consensus       111 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~--~~~l~-~~~~~~~sn~  184 (635)
T KOG0323|consen  111 QGRSFDYLVKGLQLSNEMV---AFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSET--EKYLK-EEAESVESNK  184 (635)
T ss_pred             hccchhcccchhhhhhhhh---hhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhh--hhhcc-cccccccccc
Confidence            3556678888877666643   3567788888888889999999999999999864433321  11111 1111001123


Q ss_pred             eeeeec----cceEEEEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCC
Q 000897          962 HLFRFP----HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERV 1037 (1234)
Q Consensus       962 ~lF~~~----~~~~yVklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~ 1037 (1234)
                      ..|+|+    ...||||+|||+.+||++++++|||||||+|++.||..|+++|||+|.||++|||+|++..        .
T Consensus       185 dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~--------~  256 (635)
T KOG0323|consen  185 DLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESP--------F  256 (635)
T ss_pred             cceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCC--------c
Confidence            344444    2568999999999999999999999999999999999999999999999999999998742        1


Q ss_pred             CccccCccccCCC-CeEEEEeCCCCccccCcCCcccccccccccCcccccCC----------------------------
Q 000897         1038 PKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGL---------------------------- 1088 (1234)
Q Consensus      1038 ~~iKDLsrVLGrd-s~VVIVDDsp~VW~~qpdNgI~IkpY~yF~~s~~q~Gl---------------------------- 1088 (1234)
                      ...+||..++.+. ++||||||+.+||.+++.|+|.|.||.||.+..+.+..                            
T Consensus       257 ~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~  336 (635)
T KOG0323|consen  257 FKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSR  336 (635)
T ss_pred             ccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhcccccccccccCcccccc
Confidence            4567887666666 89999999999999998899999999999986544321                            


Q ss_pred             ---------------------------------------------CCCCcccccccCCCcchhhHHHHHHHHHHHhhccc
Q 000897         1089 ---------------------------------------------LGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFS 1123 (1234)
Q Consensus      1089 ---------------------------------------------pgpSl~Eid~DEdpeD~~LlsLL~fLekIHq~FFs 1123 (1234)
                                                                   -..++.+...++.+.|++|.+++++|+.||..||.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~  416 (635)
T KOG0323|consen  337 ISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFA  416 (635)
T ss_pred             cccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhhcccchhhhh
Confidence                                                         12344455567788899999999999999999999


Q ss_pred             cC-----CCCchhhHHHHHHHHhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHH
Q 000897         1124 HQ-----SLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDK 1198 (1234)
Q Consensus      1124 ~~-----~L~~~DVR~ILkeiQ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~K 1198 (1234)
                      ..     .+...|||.+|++++..+|+||.++|||++|.+.+.. .......+..+|+....+++..+||+|+.+.+|.|
T Consensus       417 ~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~-~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k  495 (635)
T KOG0323|consen  417 KYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDE-SADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKK  495 (635)
T ss_pred             ccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcc-hhhhhhhhhcccceecccccchhhhHHhhccCcce
Confidence            75     3567999999999999999999999999999875432 34566678999999999999999999999999999


Q ss_pred             HHHHHhcC-CcEEcHHHHHHHHHhccCCCCCCCCCC
Q 000897         1199 VNWALSTG-RFVVHPGWVEASALLYRRANEQDFAIK 1233 (1234)
Q Consensus      1199 Vr~Akk~G-IkIVSPdWLedClk~wkRVDEsdYlL~ 1233 (1234)
                      +.+|...+ ++||++.||+.|+..|.++.|..|.+.
T Consensus       496 ~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~l~  531 (635)
T KOG0323|consen  496 VYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEPLD  531 (635)
T ss_pred             eeccccccceeEechhHHHHHHHHhcchhccccccc
Confidence            99999876 999999999999999999999999863

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain Back     alignment and domain information
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription] Back     alignment and domain information
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain Back     alignment and domain information
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear Back     alignment and domain information
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245 Back     alignment and domain information
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription] Back     alignment and domain information
>smart00577 CPDc catalytic domain of ctd-like phosphatases Back     alignment and domain information
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>TIGR01684 viral_ppase viral phosphatase Back     alignment and domain information
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>PHA03398 viral phosphatase superfamily protein; Provisional Back     alignment and domain information
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1 Back     alignment and domain information
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] Back     alignment and domain information
>PHA02530 pseT polynucleotide kinase; Provisional Back     alignment and domain information
>TIGR01261 hisB_Nterm histidinol-phosphatase Back     alignment and domain information
>COG5275 BRCT domain type II [General function prediction only] Back     alignment and domain information
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase Back     alignment and domain information
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins Back     alignment and domain information
>TIGR01686 FkbH FkbH-like domain Back     alignment and domain information
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672 Back     alignment and domain information
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated Back     alignment and domain information
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family Back     alignment and domain information
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain Back     alignment and domain information
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase Back     alignment and domain information
>COG4996 Predicted phosphatase [General function prediction only] Back     alignment and domain information
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea Back     alignment and domain information
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional Back     alignment and domain information
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A Back     alignment and domain information
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253 Back     alignment and domain information
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] Back     alignment and domain information
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional Back     alignment and domain information
>PRK08238 hypothetical protein; Validated Back     alignment and domain information
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin [] Back     alignment and domain information
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254 Back     alignment and domain information
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic Back     alignment and domain information
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED Back     alignment and domain information
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 Back     alignment and domain information
>PLN02770 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PRK13288 pyrophosphatase PpaX; Provisional Back     alignment and domain information
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II Back     alignment and domain information
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein Back     alignment and domain information
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional Back     alignment and domain information
>PRK13222 phosphoglycolate phosphatase; Provisional Back     alignment and domain information
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase Back     alignment and domain information
>PRK06769 hypothetical protein; Validated Back     alignment and domain information
>PRK09449 dUMP phosphatase; Provisional Back     alignment and domain information
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase Back     alignment and domain information
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A Back     alignment and domain information
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459 Back     alignment and domain information
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed Back     alignment and domain information
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase Back     alignment and domain information
>PRK10563 6-phosphogluconate phosphatase; Provisional Back     alignment and domain information
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification [] Back     alignment and domain information
>COG2503 Predicted secreted acid phosphatase [General function prediction only] Back     alignment and domain information
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only] Back     alignment and domain information
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only] Back     alignment and domain information
>TIGR00338 serB phosphoserine phosphatase SerB Back     alignment and domain information
>PRK11587 putative phosphatase; Provisional Back     alignment and domain information
>PRK14988 GMP/IMP nucleotidase; Provisional Back     alignment and domain information
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase Back     alignment and domain information
>PRK13226 phosphoglycolate phosphatase; Provisional Back     alignment and domain information
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional Back     alignment and domain information
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only] Back     alignment and domain information
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5 Back     alignment and domain information
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family Back     alignment and domain information
>PRK13223 phosphoglycolate phosphatase; Provisional Back     alignment and domain information
>TIGR01675 plant-AP plant acid phosphatase Back     alignment and domain information
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional Back     alignment and domain information
>PLN02575 haloacid dehalogenase-like hydrolase Back     alignment and domain information
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal Back     alignment and domain information
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase Back     alignment and domain information
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein Back     alignment and domain information
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1234
3ef0_A372 The Structure Of Fcp1, An Essential Rna Polymerase 6e-24
3ef1_A 442 The Structure Of Fcp1, An Essential Rna Polymerase 9e-17
3ef1_A442 The Structure Of Fcp1, An Essential Rna Polymerase 2e-06
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 145/319 (45%), Gaps = 78/319 (24%)
Query: 972  WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPF 1031
            + K RPG+  FL++ S+L+E+H+YTMG K YA E+AK++DP G LF  RV+SR D G   
Sbjct: 73   YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGS-- 130
Query: 1032 DGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYF----------- 1079
                     K L  +   + S VV+IDD   VW  N  NLI V  Y +F           
Sbjct: 131  ------LAQKSLRRLFPCDTSMVVVIDDRGDVWDWNP-NLIKVVPYEFFVGIGDINSNFL 183
Query: 1080 -------------------------PCSRRQFGLL------GPS---LLEIDHD-ERSED 1104
                                     P +++Q  LL       PS   L   DH+ ER E 
Sbjct: 184  SGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEK 243
Query: 1105 GTLASSLGVIERLHKIFFSHQSLDDVDVRN----------ILAAEQRKILAGCRIVFSRV 1154
                    V++ +H +++  +  +D+  R+          I+   ++K+L GCR++FS V
Sbjct: 244  --------VLKDIHAVYYEEE--NDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGV 293
Query: 1155 FPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRF-VVHPG 1213
             P+G  +     + + A  FGA          TH++A  + T+KV  A+S G   VV   
Sbjct: 294  IPLG-VDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLN 352
Query: 1214 WVEASALLYRRANEQDFAI 1232
            W+  S   ++R  E D+ +
Sbjct: 353  WLTESLSQWKRLPESDYLL 371
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442 Back     alignment and structure
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1234
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 2e-82
3ef1_A 442 RNA polymerase II subunit A C-terminal domain phos 9e-37
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 5e-30
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 8e-19
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 7e-18
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 2e-15
2ght_A181 Carboxy-terminal domain RNA polymerase II polypept 2e-15
3qle_A204 TIM50P; chaperone, mitochondrion, preprotein trans 3e-15
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 7e-15
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 1e-14
2hhl_A195 CTD small phosphatase-like protein; CTD phosphatas 2e-14
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 2e-12
3olc_X 298 DNA topoisomerase 2-binding protein 1; BRCT domain 4e-10
1t15_A 214 Breast cancer type 1 susceptibility protein; prote 4e-11
1l0b_A 229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 7e-11
2nte_A 210 BARD-1, BRCA1-associated ring domain protein 1; BR 6e-10
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 1e-09
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 3e-09
3sqd_A 219 PAX-interacting protein 1; tandem BRCT domains, ce 2e-08
2etx_A 209 Mediator of DNA damage checkpoint protein 1; tande 7e-07
3l41_A 220 BRCT-containing protein 1; BRC1, BRCT domain, tand 7e-07
3shq_A320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 1e-06
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 1e-06
3u3z_A 199 Microcephalin; DNA repair, cell cycle regulation, 2e-06
3al2_A 235 DNA topoisomerase 2-binding protein 1; BRCT domain 1e-05
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 7e-04
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372 Back     alignment and structure
 Score =  273 bits (698), Expect = 2e-82
 Identities = 102/383 (26%), Positives = 166/383 (43%), Gaps = 67/383 (17%)

Query: 901  IQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPH 960
            ++ E  +RL ++      ++L L++DLD T++++     V     +      +  R+   
Sbjct: 5    LESENVKRLRQE------KRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRS 58

Query: 961  RHLFRFPH---MGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLF 1017
             +L   P       + K RPG+  FL++ S+L+E+H+YTMG K YA E+AK++DP G LF
Sbjct: 59   FNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLF 118

Query: 1018 AGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERY 1076
              RV+SR D G            K L  +   + S VV+IDD   VW  N  NLI V  Y
Sbjct: 119  QDRVLSRDDSGSLA--------QKSLRRLFPCDTSMVVVIDDRGDVWDWNP-NLIKVVPY 169

Query: 1077 TYFP-------------------------------CSRRQFGLLGPSLLEIDHDERSE-- 1103
             +F                                 S R       +LLE +        
Sbjct: 170  EFFVGIGDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHT 229

Query: 1104 -----DGTLASSLGVIERLHKIFFSHQ--------SLDDVDVRNILAAEQRKILAGCRIV 1150
                 D  L     V++ +H +++  +        +    +V  I+   ++K+L GCR++
Sbjct: 230  LLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLL 289

Query: 1151 FSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRF-V 1209
            FS V P+G  +     + + A  FGA          TH++A  + T+KV  A+S G   V
Sbjct: 290  FSGVIPLGV-DVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKV 348

Query: 1210 VHPGWVEASALLYRRANEQDFAI 1232
            V   W+  S   ++R  E D+ +
Sbjct: 349  VKLNWLTESLSQWKRLPESDYLL 371
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107 Back     alignment and structure
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A Length = 181 Back     alignment and structure
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118} Length = 204 Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 Back     alignment and structure
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens} Length = 195 Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104 Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320 Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1234
d1ta0a_181 c.108.1.16 (A:) Carboxy-terminal domain RNA polyme 1e-26
d1cdza_96 c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom 1e-10
d1t15a1109 c.15.1.3 (A:1649-1757) Breast cancer associated pr 4e-08
d1t15a2102 c.15.1.3 (A:1758-1859) Breast cancer associated pr 2e-07
d1zx0a1229 c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe 0.003
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 1e-26
 Identities = 37/169 (21%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 912  QKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGM 971
            + K   + K+C+V+DLD TL++S                K   + +             +
Sbjct: 7    EAKAQDSDKICVVIDLDETLVHS--------------SFKPVNNADFIIPVEIDGVVHQV 52

Query: 972  WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPF 1031
            +   RP +  FL+R  +LFE  L+T     YA  +A +LD  G   A             
Sbjct: 53   YVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGN 112

Query: 1032 DGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFP 1080
                     KDL  +      V+I+D+S   +  +  N + V  +    
Sbjct: 113  YV-------KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM 154
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1234
d1ta0a_181 Carboxy-terminal domain RNA polymerase II polypept 100.0
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 99.65
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 99.55
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 99.53
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 99.44
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 99.03
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 98.98
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 98.98
d1u7pa_164 Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu 97.84
d1ltqa1149 Polynucleotide kinase, phosphatase domain {Bacteri 97.18
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 97.0
d2ah5a1210 predicted phosphatase SP0104 {Streptococcus pneumo 96.86
d2obba1122 Hypothetical protein BT0820 {Bacteroides thetaiota 96.78
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 95.87
d2feaa1226 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate 95.78
d2fpwa1161 Histidine biosynthesis bifunctional protein HisB, 95.15
d2hsza1224 Phosphoglycolate phosphatase Gph {Haemophilus somn 94.24
d1xpja_124 Hypothetical protein VC0232 {Vibrio cholerae [TaxI 94.21
d2hdoa1207 Phosphoglycolate phosphatase {Lactobacillus planta 94.04
d1te2a_218 Phosphatase YniC {Escherichia coli [TaxId: 562]} 94.02
d1x42a1230 Hypothetical protein PH0459 {Archaeon Pyrococcus h 93.77
d1yj5a1195 5' polynucleotide kinase-3' phosphatase, middle do 92.82
d1swva_257 Phosphonoacetaldehyde hydrolase {Bacillus cereus [ 92.8
d2go7a1204 Hypothetical protein SP2064 {Streptococcus pneumon 92.53
d2o2xa1209 Hypothetical protein Mll2559 {Mesorhizobium loti [ 92.09
d2amya1243 Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 91.1
d2gfha1247 N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m 90.81
d2bdua1291 Cytosolic 5'-nucleotidase III {Mouse (Mus musculus 87.44
d2hcfa1228 Hypothetical protein CT1708 {Chlorobium tepidum [T 85.99
d1rkqa_271 Hypothetical protein YidA {Escherichia coli [TaxId 85.93
d1xvia_232 Putative mannosyl-3-phosphoglycerate phosphatase M 84.83
d2fdra1222 Hypothetical protein Atu0790 {Agrobacterium tumefa 84.28
d1zs9a1253 E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} 84.09
d2c4na1250 NagD {Escherichia coli [TaxId: 562]} 83.05
d1nnla_217 Phosphoserine phosphatase {Human (Homo sapiens) [T 82.74
d1zrna_220 L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s 81.06
d1s2oa1244 Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 80.36
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-40  Score=270.84  Aligned_cols=169  Identities=29%  Similarity=0.373  Sum_probs=137.4

Q ss_pred             HHCCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEE--CCCEEEEEECCCHHHHHHHHHCCCEE
Q ss_conf             3128983999847884452244798898413353100011568986202442--46418997447889999986139569
Q 000897          915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRF--PHMGMWTKLRPGIWTFLERASKLFEM  992 (1234)
Q Consensus       915 Lls~kKLTLVLDLDETLIHSs~~~eldP~~~Eii~~~EeqD~~~P~~~lF~i--~~~~~yVKLRPGL~EFLeeLSk~YEI  992 (1234)
                      ....+|+|||||||||||||+....-.+  +              ....+..  ....+||++|||+++||++++++|||
T Consensus        10 ~~~~~k~~LVLDLDeTLihs~~~~~~~~--~--------------~~~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~yei   73 (181)
T d1ta0a_          10 AQDSDKICVVIDLDETLVHSSFKPVNNA--D--------------FIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFEC   73 (181)
T ss_dssp             GGGTTSCEEEECCBTTTEEEESSCCTTC--S--------------EEEEEEETTEEEEEEEEECTTHHHHHHHHHHHSEE
T ss_pred             CCCCCCEEEEEECCCCEECCCCCCCCCC--C--------------CEEEECCCCEEEEEEEECCCCHHHHHHHHHHCEEE
T ss_conf             5668981899968997785426788776--6--------------41000012101334786398899999999860089


Q ss_pred             EEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCC
Q ss_conf             9991880888999999766999632102552399999889999997212476634997-809999089874334857721
Q 000897          993 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLI 1071 (1234)
Q Consensus       993 VIYTAGtkeYAd~VLkiLDP~g~LF~~RIiSRDdc~~~~dG~er~~yiKDLsrILGrd-srVVIIDDspdVW~~qpdNlI 1071 (1234)
                      +|||+|++.||++|++.|||++. |..+++ |++|. ...+    .++|||+ .+|++ +++|||||++.+|..|++|+|
T Consensus        74 ~I~Ta~~~~YA~~il~~ldp~~~-~~~~~~-r~~c~-~~~~----~~~KdL~-~l~~~l~~vvivDd~~~~~~~~~~N~I  145 (181)
T d1ta0a_          74 VLFTASLAKYADPVADLLDKWGA-FRARLF-RESCV-FHRG----NYVKDLS-RLGRDLRRVLILDNSPASYVFHPDNAV  145 (181)
T ss_dssp             EEECSSCHHHHHHHHHHHCSSCC-EEEEEC-GGGSE-EETT----EEECCGG-GSCSCGGGEEEECSCGGGGTTCGGGBC
T ss_pred             EEECCCCHHHHHHHHHHHCCCCC-EEEEEE-EEEEE-ECCC----CCCCCHH-HCCCCHHHEEEECCCHHHHHCCCCCEE
T ss_conf             99838717789999998652773-658998-40255-2288----5525275-519888893887288666404834765


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             0243112367522348889985223445777512467789999998761014688785035888888
Q 000897         1072 VVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138 (1234)
Q Consensus      1072 pIkpY~yF~~s~~Q~Glp~pSl~Eid~DEdpeD~~LlsLL~lLe~IHq~FF~~~~Ld~~DVR~ILke 1138 (1234)
                      +|++|..                      +++|.+|..++++|+.+++         ..|||.+|++
T Consensus       146 ~I~~f~~----------------------~~~D~eL~~l~~~L~~l~~---------~~DVR~~l~~  181 (181)
T d1ta0a_         146 PVASWFD----------------------NMSDTELHDLLPFFEQLSR---------VDDVYSVLRQ  181 (181)
T ss_dssp             CCCCCSS----------------------CTTCCHHHHHHHHHHHHTT---------CSCHHHHHCC
T ss_pred             EECCCCC----------------------CCCCHHHHHHHHHHHHHCC---------CCCHHHHHCC
T ss_conf             7067689----------------------9882779999999999764---------8767788658
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]} Back     information, alignment and structure
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]} Back     information, alignment and structure
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure