Citrus Sinensis ID: 000906
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1231 | 2.2.26 [Sep-21-2011] | |||||||
| O14099 | 425 | Uncharacterized RING fing | yes | no | 0.212 | 0.614 | 0.386 | 8e-48 | |
| Q96PM5 | 261 | RING finger and CHY zinc | yes | no | 0.164 | 0.777 | 0.435 | 3e-41 | |
| Q9CR50 | 261 | RING finger and CHY zinc | yes | no | 0.160 | 0.758 | 0.431 | 4e-40 | |
| Q6IRP0 | 312 | RING finger protein 126-B | N/A | no | 0.036 | 0.144 | 0.413 | 8e-05 | |
| Q6DIP3 | 311 | RING finger protein 126 O | no | no | 0.036 | 0.144 | 0.413 | 9e-05 | |
| Q7T0Q3 | 312 | RING finger protein 126-A | N/A | no | 0.036 | 0.144 | 0.413 | 0.0002 | |
| Q91YL2 | 313 | RING finger protein 126 O | no | no | 0.036 | 0.143 | 0.391 | 0.0002 | |
| Q95SP2 | 626 | E3 ubiquitin-protein liga | no | no | 0.033 | 0.065 | 0.466 | 0.0009 |
| >sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1 | Back alignment and function desciption |
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Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 155/277 (55%), Gaps = 16/277 (5%)
Query: 935 VSQESLEAAIRRVSRDSSLDPQKKSFIIQNLLMSRWITGQQMTHSKVT----ISSSGEEI 990
Q+S+ I + S L ++K+ ++Q +LMS ++ ++ TH K + +SSS E
Sbjct: 72 TQQDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYLKYRR-THKKESDENQLSSSDLE- 129
Query: 991 PGQQPSYRDTEKLIFGCKHYKRNCKLVATCCNSLYTCIRCHDEVADHALDRKSISEMMCM 1050
+Y D E+ I GC HY RNCK+ C+ YTC CH++ DH L+R ++ M+CM
Sbjct: 130 ----KTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCM 185
Query: 1051 KCLIIQPVGSTCSTTSCKNFSMARYYCRICKLFDDE--REIYHCPYCNLCRVGKGLGIDY 1108
C +QP C CKN M RYYC CKL+DD+ + YHC C +CR+G+GLG DY
Sbjct: 186 ICSKVQPAAQYCKY--CKN-CMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDY 242
Query: 1109 FHCMNCNACMSRSL-QVHICREKSFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDY 1167
FHC C C+ S+ H C E+S NCPIC E +F+S L C H +H C ++Y
Sbjct: 243 FHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEY 302
Query: 1168 TCTHYTCPICSKSLGDMKVYFSMLDALLAEEKMPPEY 1204
T+Y CP C K++ ++ F +LD + + MP Y
Sbjct: 303 IRTNYRCPTCYKTIINVNSLFRILDMEIERQPMPYPY 339
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1231 | ||||||
| 359491354 | 1288 | PREDICTED: uncharacterized protein LOC10 | 0.952 | 0.910 | 0.554 | 0.0 | |
| 255540873 | 1268 | zinc finger protein, putative [Ricinus c | 0.952 | 0.925 | 0.526 | 0.0 | |
| 356565071 | 1262 | PREDICTED: uncharacterized protein LOC10 | 0.952 | 0.929 | 0.512 | 0.0 | |
| 449441047 | 1252 | PREDICTED: uncharacterized protein LOC10 | 0.930 | 0.914 | 0.478 | 0.0 | |
| 357504223 | 1225 | RING finger and CHY zinc finger domain-c | 0.914 | 0.919 | 0.496 | 0.0 | |
| 186478634 | 1254 | zinc ion binding protein [Arabidopsis th | 0.924 | 0.907 | 0.498 | 0.0 | |
| 8778297 | 1260 | F14D16.3 [Arabidopsis thaliana] | 0.924 | 0.903 | 0.495 | 0.0 | |
| 297850284 | 1260 | F14D16.3 [Arabidopsis lyrata subsp. lyra | 0.924 | 0.903 | 0.494 | 0.0 | |
| 186495447 | 1259 | zinc ion binding protein [Arabidopsis th | 0.528 | 0.517 | 0.572 | 0.0 | |
| 110741653 | 1189 | hypothetical protein [Arabidopsis thalia | 0.528 | 0.547 | 0.572 | 0.0 |
| >gi|359491354|ref|XP_002266572.2| PREDICTED: uncharacterized protein LOC100267228 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1319 bits (3413), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 705/1271 (55%), Positives = 861/1271 (67%), Gaps = 98/1271 (7%)
Query: 6 STENAADKDEDEAPPLSESETFPGVGLVDAPILLLVYFHKAQRAELVELHRLAV--TALE 63
+++ A+ PL S + G L DAPILL V+FHKA RAEL EL RLA +
Sbjct: 18 ASQTEAEAAAQPLEPLCRSVS--GAQLRDAPILLFVFFHKALRAELAELRRLAAAESGCR 75
Query: 64 RGFHDRKLILELQRRFEFLKVVYKYHCVAEDEVIFLALDAHIKNVVSTYSLEHESIDELF 123
G + L++E++RRFEFLK+ YKYH AEDEVIFLALD HIKNV TYSLEH+SID+LF
Sbjct: 76 GGSSNGNLVVEIRRRFEFLKLFYKYHSAAEDEVIFLALDVHIKNVAHTYSLEHKSIDDLF 135
Query: 124 DSVFDLLNVLLGGSENVSKPFQEVVFCIGTIKTFICQHMLKEEEQYVLSSKYPTASLVNE 183
S+F L+VL+ G N +KPFQE+V I TI+T IC HMLKEEEQ
Sbjct: 136 SSIFHCLDVLMEGDANTAKPFQELVLLISTIQTTICHHMLKEEEQ--------------- 180
Query: 184 GGIHEDEVFPLLVRQFSSTEQASLVCQFLCSVPVMLLEVLLPWMLSFLSEDAKVEVRHCI 243
VFPLL++QFS EQASLV QF+CSVPV+LLE LPWM SFLS + +V V +CI
Sbjct: 181 -------VFPLLMKQFSPQEQASLVWQFMCSVPVLLLEDFLPWMTSFLSPEEQVNVVNCI 233
Query: 244 KEIVSEETTLQEVLTSWLHSNSQPTFWDFFIKNEKIVQHLD--GSANMKSIPKLLQSKSY 301
KE+V EE L+EV+ SWL +N+QP F +I + G AN+K K+ SKS+
Sbjct: 234 KEVVPEEKLLEEVVISWLGNNNQP-----FGSPTRIGEEAQSVGPANLKDALKVYSSKSF 288
Query: 302 SGENRDRKRVCGLHANVEQSPVSGLLPWHRIIRKDLEGILESLLQMKSSNAFSDLHSVAV 361
S E R K V GL NV Q+PV GL WH IRKDL+GILE L Q++SS++FS L SV V
Sbjct: 289 STEIRQWKEVFGLKTNVGQNPVDGLHLWHGAIRKDLKGILEELYQIRSSDSFSTLASVIV 348
Query: 362 QLKLLVDVLIFYGTALERFYYPGINELPSGCPARPKEQF----HVEPLQQLLYHYFHNSN 417
QLK L DVLIFY AL++ +YP ++ L GC + ++F +E LQ+LL++ N
Sbjct: 349 QLKFLADVLIFYSNALDKIFYPLLDLLSDGCLSPSYKRFPDESQIEGLQRLLHYNAKNGI 408
Query: 418 PPCKFVEKLICELESFVMDVRKQFAFQETEC-------CSLEMQQHLLYRTLYMMPLGLL 470
P KFVEKL ELESFVM + FQE E CS E+Q+ LLY +L MMPLGLL
Sbjct: 409 PLSKFVEKLCWELESFVMGIGDHLVFQEMEVFPLISAKCSHELQKWLLYMSLLMMPLGLL 468
Query: 471 KCVITWFSAYLSEDESRKCSKA--------NAHFC------VRSKPLNFLPCTRMLKLVK 516
KCVITWF A+LSE+ES+ K+ N F VR + K ++
Sbjct: 469 KCVITWFLAHLSEEESKSILKSIKQEDSLVNMSFASLLHEWVRIGYSGKTSVEKFRKDLQ 528
Query: 517 EQNKDKLI-----------QFFSDKDNK---------WYPYSSSSPFHTA---------- 546
E K + FFS D K P + H+
Sbjct: 529 EMFKSRSSFHSDQIEEDGRSFFSPSDAKPCERSNPGLMKPIPGNKATHSVNDSSSSGSHT 588
Query: 547 -KKYETSCSSGTGLLISFPQTIRTFDPLPKLSVEKSCSGSIID-EPIPMDLIFFFHKALK 604
+KY TS SSG L I FP T++ F P+P + SI++ EP P+DLIFFFHKALK
Sbjct: 589 SEKYGTSYSSGINLHIFFPGTLKIFHPVPNFPDGMGDASSILNLEPRPVDLIFFFHKALK 648
Query: 605 KDLDYLVFGSAQLAENALFLVEFHRRFNLIRLLYEIHSDAEDEIAFPAMEAKGKLQNISH 664
KDL++LVFGSA+LAEN +L +FHRRF LIR LY+IHSDAEDEIAFPA+EAKGK QNISH
Sbjct: 649 KDLEFLVFGSAKLAENTGYLADFHRRFRLIRFLYQIHSDAEDEIAFPALEAKGKGQNISH 708
Query: 665 SYSIDHRLEAEHFKKISNILIEMLELQASVSSNESNAQDKRMLKYKQLCIRLQDICKSMH 724
SY+IDH+LE EHF K+S IL EM +L SVS + D+RMLKY QLC++L D+C+S+
Sbjct: 709 SYTIDHKLEVEHFNKLSFILDEMSKLHISVSGVHFDKMDQRMLKYHQLCMKLHDMCQSLQ 768
Query: 725 KLLSEHIHREETELWPLFRECFSIEEQEKIIKCMLGRIRAETLQDMLPWLMASLTPREQN 784
K+L +H++ EE ELWPLFRECFS +EQEKII +LGR+RAE LQ+++PWLMASLTP+EQ+
Sbjct: 769 KILCDHVNHEEIELWPLFRECFSNKEQEKIIGSILGRMRAEILQEIIPWLMASLTPKEQH 828
Query: 785 AMMSLWCSATKCTMFEEWLGEWWEG---YDMTSARVESSVSPIFAGDPLEIISTYLSKEV 841
AMMSLW ATK TMFEEWLGEWW+G YD+ ES + + DPLE++S YL KE
Sbjct: 829 AMMSLWRKATKNTMFEEWLGEWWDGVNQYDIAKVVEESKMPQPWLADPLEVVSRYLYKED 888
Query: 842 PEEWNGESCNKGSNFTQNNYNGTDIGPLRKSSVGCKEQNFIEELSNYECSKCIKLCSDGD 901
E E K F N+ +I +V KE+ E+ N++CS+C K S+ +
Sbjct: 889 TGE---EVSEKSDEFLLNDSVSANIMLPGNHAVDNKEKLLNEDHDNHQCSECKKPYSENE 945
Query: 902 KKRSNEAVGLMAWIDKPGQNFP--EKCRNHENILAVSQESLEAAIRRVSRDSSLDPQKKS 959
KKRSNE + +++PGQ ++ + E++L++SQ+ LEAAIRRVSRDSSLDPQKKS
Sbjct: 946 KKRSNEVADVTNQVNRPGQLLQDNQQFSHQEHLLSMSQDDLEAAIRRVSRDSSLDPQKKS 1005
Query: 960 FIIQNLLMSRWITGQQMTHSKVTISSSGEEIPGQQPSYRDTEKLIFGCKHYKRNCKLVAT 1019
IIQNLLMSRWI QQ +HS+V + SG+EIPGQ PSYRD KL FGCKHYKRNCKLVA
Sbjct: 1006 HIIQNLLMSRWIVRQQKSHSEVAVLGSGKEIPGQCPSYRDPLKLTFGCKHYKRNCKLVAA 1065
Query: 1020 CCNSLYTCIRCHDEVADHALDRKSISEMMCMKCLIIQPVGSTCSTTSCKNFSMARYYCRI 1079
CCN LY C CHD+V DH++DRK ++MMCM+CL+IQPVG TCST SC N SMA+YYCRI
Sbjct: 1066 CCNQLYACRLCHDDVTDHSMDRKKTTKMMCMRCLVIQPVGPTCSTASCDNLSMAKYYCRI 1125
Query: 1080 CKLFDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSLQVHICREKSFMDNCPIC 1139
CK FDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSL VHICREK DNCPIC
Sbjct: 1126 CKFFDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSLSVHICREKWMEDNCPIC 1185
Query: 1140 HEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSLGDMKVYFSMLDALLAEEK 1199
HE +F+S++P KALPCGH+MHS CFQDYTCTHYTCPICSKSLGDM+VYF MLDALLAEEK
Sbjct: 1186 HEFIFTSSSPVKALPCGHLMHSACFQDYTCTHYTCPICSKSLGDMQVYFGMLDALLAEEK 1245
Query: 1200 MPPEYLGQTQV 1210
+P EY QTQ+
Sbjct: 1246 IPDEYSTQTQM 1256
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540873|ref|XP_002511501.1| zinc finger protein, putative [Ricinus communis] gi|223550616|gb|EEF52103.1| zinc finger protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356565071|ref|XP_003550768.1| PREDICTED: uncharacterized protein LOC100802706 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449441047|ref|XP_004138295.1| PREDICTED: uncharacterized protein LOC101212459 [Cucumis sativus] gi|449477600|ref|XP_004155068.1| PREDICTED: uncharacterized protein LOC101229801 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357504223|ref|XP_003622400.1| RING finger and CHY zinc finger domain-containing protein [Medicago truncatula] gi|355497415|gb|AES78618.1| RING finger and CHY zinc finger domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|186478634|ref|NP_173325.2| zinc ion binding protein [Arabidopsis thaliana] gi|332191660|gb|AEE29781.1| zinc ion binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|8778297|gb|AAF79306.1|AC068602_29 F14D16.3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297850284|ref|XP_002893023.1| F14D16.3 [Arabidopsis lyrata subsp. lyrata] gi|297338865|gb|EFH69282.1| F14D16.3 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|186495447|ref|NP_177615.2| zinc ion binding protein [Arabidopsis thaliana] gi|332197509|gb|AEE35630.1| zinc ion binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|110741653|dbj|BAE98773.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1231 | ||||||
| TAIR|locus:2027176 | 1259 | AT1G74770 [Arabidopsis thalian | 0.528 | 0.517 | 0.572 | 5.5e-299 | |
| TAIR|locus:2011266 | 1254 | AT1G18910 [Arabidopsis thalian | 0.546 | 0.536 | 0.576 | 1.5e-298 | |
| TAIR|locus:2089678 | 1254 | BTS "BRUTUS" [Arabidopsis thal | 0.237 | 0.232 | 0.569 | 2e-161 | |
| POMBASE|SPAC2F3.16 | 425 | SPAC2F3.16 "ubiquitin-protein | 0.212 | 0.614 | 0.380 | 2.7e-52 | |
| DICTYBASE|DDB_G0281595 | 342 | rchy "RING finger and CHY zinc | 0.183 | 0.660 | 0.421 | 3.7e-50 | |
| UNIPROTKB|J9NZR5 | 259 | RCHY1 "Uncharacterized protein | 0.167 | 0.795 | 0.429 | 7.8e-47 | |
| UNIPROTKB|Q96PM5 | 261 | RCHY1 "RING finger and CHY zin | 0.160 | 0.758 | 0.441 | 1.3e-46 | |
| UNIPROTKB|A4IFE2 | 261 | RCHY1 "RCHY1 protein" [Bos tau | 0.160 | 0.758 | 0.431 | 2.7e-46 | |
| MGI|MGI:1915348 | 261 | Rchy1 "ring finger and CHY zin | 0.160 | 0.758 | 0.431 | 9.1e-46 | |
| RGD|1359180 | 261 | Rchy1 "ring finger and CHY zin | 0.160 | 0.758 | 0.431 | 9.1e-46 |
| TAIR|locus:2027176 AT1G74770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1980 (702.1 bits), Expect = 5.5e-299, Sum P(3) = 5.5e-299
Identities = 381/666 (57%), Positives = 476/666 (71%)
Query: 549 YETSCSSGTGLLISFPQTIRTFDPLPKLSVEKSCSGSIIDEPIPMDLIFFFHKALKKDLD 608
YET SS ++F ++ LP EK+ +I + P+DL+FFFHKA+K DLD
Sbjct: 573 YETPYSSRMNQQMTFSGKLKPPLHLPDFFGEKNMDDPMIMDVKPIDLLFFFHKAMKMDLD 632
Query: 609 YLVFGSAQLAENALFLVEFHRRFNLIRLLYEIHSDAEDEIAFPAMEAKGKLQNISHSYSI 668
YLV GS +LA + FL EF +RF++I+ LY+IHSDAEDEIAFPA+EAKG+L+NISHS+SI
Sbjct: 633 YLVCGSTRLAADFRFLAEFQQRFHMIKFLYQIHSDAEDEIAFPALEAKGQLKNISHSFSI 692
Query: 669 DHRLEAEHFKKISNILIEMLELQASVSSNESNAQDK-RMLKYKQLCIRLQDICKSMHKLL 727
DH LE +HF K+S IL EM EL VS+ + A D R +KY++LC+ L++ICKSMHKLL
Sbjct: 693 DHELETKHFDKVSFILNEMSELNMLVSTINTTAADHDRKMKYERLCLSLREICKSMHKLL 752
Query: 728 SEHIHREETELWPLFRECFSIEEQEKIIKCMLGRIRAETLQDMLPWLMASLTPREQNAMM 787
SEHI EETELW LFR CFSIEEQEKII CMLGRI E LQDM+PWLM SLT EQ A M
Sbjct: 753 SEHIQHEETELWGLFRNCFSIEEQEKIIGCMLGRISGEILQDMIPWLMESLTSDEQLAAM 812
Query: 788 SLWCSATKCTMFEEWLGEWWEGYDMTSARVESSVSPIFAGDPLEIISTYLSKEVPEEWNG 847
SLW AT+ TMF EWL EW+ G+ + E++ P DPLEI+ YL + + G
Sbjct: 813 SLWRQATRKTMFVEWLTEWYNGHVLQEEAGEANNDPFGDSDPLEIVWKYLFEASADGEKG 872
Query: 848 ESCNKGSNFTQNNYNG--TDIGPLRKSSVGCKEQNFIEELSNYECSKCIKLCSDGDKKRS 905
+ + N+ G P K VG KE+ +E S+ K+C +++
Sbjct: 873 SMRSSLLKLPKTNFTGIMNQPPPNYKVEVGKKEEKDLER------SESKKICRGSNQEGD 926
Query: 906 NEAVGLMAWIDKPGQNFPEKCRNHENILAVSQESLEAAIRRVSRDSSLDPQKKSFIIQNL 965
E M+ K Q P K +E +L +S+E L I+++S DSSLDPQKK +I QNL
Sbjct: 927 KEQTDKMS--QKVSQFGPSK--KYEQLLTMSEEELVVVIKKISCDSSLDPQKKDYIKQNL 982
Query: 966 LMSRWITGQQMTHSKVT-ISSSGEEIPGQQPSYRDTEKLIFGCKHYKRNCKLVATCCNSL 1024
LMSRW Q+ + + + +SS+ E + GQ PSYRD LIFGC HYKRNCKL+A CC+ L
Sbjct: 983 LMSRWNISQRTYNLEPSSLSSNMETVHGQHPSYRDPHSLIFGCNHYKRNCKLLAPCCDKL 1042
Query: 1025 YTCIRCHDEVADHALDRKSISEMMCMKCLIIQPVGSTCSTTSCKNFSMARYYCRICKLFD 1084
+TCIRCHDE ADH++DRK I++MMCMKCL+IQP+G+ CS TSCK+ SM +Y+C+ICKL+D
Sbjct: 1043 FTCIRCHDEEADHSVDRKQITKMMCMKCLLIQPIGANCSNTSCKS-SMGKYFCKICKLYD 1101
Query: 1085 DEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSLQVHICREKSFMDNCPICHEDLF 1144
DER+IYHCPYCNLCRVGKGLGIDYFHCM CNACMSR+L H+CREK DNCPICHE +F
Sbjct: 1102 DERKIYHCPYCNLCRVGKGLGIDYFHCMKCNACMSRTLVEHVCREKCLEDNCPICHEYIF 1161
Query: 1145 SSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSLGDMKVYFSMLDALLAEEKMPPEY 1204
+S++P KALPCGH+MHSTCFQ+YTC+HYTCP+CSKSLGDM+VYF MLDALLAEEKMP EY
Sbjct: 1162 TSSSPVKALPCGHLMHSTCFQEYTCSHYTCPVCSKSLGDMQVYFKMLDALLAEEKMPDEY 1221
Query: 1205 LGQTQV 1210
+TQV
Sbjct: 1222 SNKTQV 1227
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| TAIR|locus:2011266 AT1G18910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2089678 BTS "BRUTUS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| POMBASE|SPAC2F3.16 SPAC2F3.16 "ubiquitin-protein ligase E3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0281595 rchy "RING finger and CHY zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9NZR5 RCHY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A4IFE2 RCHY1 "RCHY1 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:1915348 Rchy1 "ring finger and CHY zinc finger domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00000067001 | SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (1276 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1231 | |||
| pfam05495 | 74 | pfam05495, zf-CHY, CHY zinc finger | 3e-24 | |
| cd12108 | 130 | cd12108, Hr-like, Hemerythrin-like domain | 4e-22 | |
| cd12108 | 130 | cd12108, Hr-like, Hemerythrin-like domain | 4e-22 | |
| pfam13639 | 46 | pfam13639, zf-RING_2, Ring finger domain | 3e-09 | |
| pfam13923 | 45 | pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI | 2e-06 | |
| cd00162 | 45 | cd00162, RING, RING-finger (Really Interesting New | 8e-06 | |
| pfam01814 | 129 | pfam01814, Hemerythrin, Hemerythrin HHE cation bin | 2e-05 | |
| COG5243 | 491 | COG5243, HRD1, HRD ubiquitin ligase complex, ER me | 4e-05 | |
| pfam01814 | 129 | pfam01814, Hemerythrin, Hemerythrin HHE cation bin | 5e-05 | |
| smart00184 | 40 | smart00184, RING, Ring finger | 9e-05 | |
| COG4357 | 105 | COG4357, COG4357, Zinc finger domain containing pr | 3e-04 | |
| pfam13445 | 55 | pfam13445, zf-RING_LisH, RING-type zinc-finger, Li | 0.001 |
| >gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 3e-24
Identities = 36/79 (45%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 1007 CKHYKRN-CKLVATCCNSLYTCIRCHDEVADHALDRKSISEMMCMKCLIIQPVGSTCSTT 1065
CKHY RN C + A CCN Y C CHDE+ DH LDR ++ ++C C Q V
Sbjct: 1 CKHYHRNLCAIRAPCCNKYYPCRLCHDELEDHPLDRWNVKAVLCGVCRTEQTV----QEY 56
Query: 1066 SCKNFSMARYYCRICKLFD 1084
+C A YYC ICKLF
Sbjct: 57 NC-GVEFADYYCPICKLFF 74
|
This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues. We have named this domain after the N-terminal motif CXHY. This domain can be found in isolation in some proteins, but is also often associated with pfam00097. One of the proteins in this family is a mitochondrial intermembrane space protein called Hot13. This protein is involved in the assembly of small TIM complexes. Length = 74 |
| >gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain | Back alignment and domain information |
|---|
| >gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
|---|
| >gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|214546 smart00184, RING, Ring finger | Back alignment and domain information |
|---|
| >gnl|CDD|226801 COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1231 | |||
| KOG1940 | 276 | consensus Zn-finger protein [General function pred | 100.0 | |
| PF05495 | 71 | zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc | 99.81 | |
| PF01814 | 133 | Hemerythrin: Hemerythrin HHE cation binding domain | 99.12 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 99.08 | |
| PF01814 | 133 | Hemerythrin: Hemerythrin HHE cation binding domain | 98.99 | |
| COG4357 | 105 | Zinc finger domain containing protein (CHY type) [ | 98.97 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 98.94 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 98.85 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 98.78 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.77 | |
| PRK10992 | 220 | iron-sulfur cluster repair di-iron protein; Provis | 98.66 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 98.6 | |
| TIGR03652 | 216 | FeS_repair_RIC iron-sulfur cluster repair di-iron | 98.54 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 98.52 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.51 | |
| PF14599 | 61 | zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A. | 98.47 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.46 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 98.43 | |
| PRK10992 | 220 | iron-sulfur cluster repair di-iron protein; Provis | 98.41 | |
| TIGR03652 | 216 | FeS_repair_RIC iron-sulfur cluster repair di-iron | 98.33 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.32 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.24 | |
| PRK13276 | 224 | cell wall biosynthesis protein ScdA; Provisional | 98.23 | |
| PRK13276 | 224 | cell wall biosynthesis protein ScdA; Provisional | 98.15 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 98.09 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 98.08 | |
| KOG2930 | 114 | consensus SCF ubiquitin ligase, Rbx1 component [Po | 98.07 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 98.0 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 97.99 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.98 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 97.97 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 97.95 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 97.91 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 97.83 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 97.82 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 97.82 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 97.72 | |
| COG2846 | 221 | Regulator of cell morphogenesis and NO signaling [ | 97.59 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 97.53 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.5 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 97.44 | |
| COG3945 | 189 | Uncharacterized conserved protein [Function unknow | 97.44 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 97.42 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.4 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.37 | |
| COG2846 | 221 | Regulator of cell morphogenesis and NO signaling [ | 97.31 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 97.29 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 97.28 | |
| COG3945 | 189 | Uncharacterized conserved protein [Function unknow | 97.13 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.12 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 97.11 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 97.02 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 96.95 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.89 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 96.86 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 96.53 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.41 | |
| KOG4265 | 349 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.3 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 96.26 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.23 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 96.02 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.82 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 95.64 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.37 | |
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 95.21 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.13 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 95.13 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.09 | |
| KOG4739 | 233 | consensus Uncharacterized protein involved in syna | 93.85 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.71 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 93.58 | |
| KOG4445 | 368 | consensus Uncharacterized conserved protein, conta | 93.41 | |
| PF10367 | 109 | Vps39_2: Vacuolar sorting protein 39 domain 2; Int | 93.2 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 92.89 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 92.87 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 91.98 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 91.79 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 91.42 | |
| PF12906 | 47 | RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. | 91.28 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 91.24 | |
| KOG4275 | 350 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.22 | |
| KOG3970 | 299 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.93 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 90.55 | |
| KOG1571 | 355 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.52 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 90.13 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 90.1 | |
| KOG1940 | 276 | consensus Zn-finger protein [General function pred | 89.6 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 89.6 | |
| KOG3268 | 234 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.55 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.54 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.12 | |
| PF07800 | 162 | DUF1644: Protein of unknown function (DUF1644); In | 87.74 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 87.69 | |
| COG2461 | 409 | Uncharacterized conserved protein [Function unknow | 87.29 | |
| PF05883 | 134 | Baculo_RING: Baculovirus U-box/Ring-like domain; I | 87.29 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 87.02 | |
| PHA02862 | 156 | 5L protein; Provisional | 86.58 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.33 | |
| PRK14890 | 59 | putative Zn-ribbon RNA-binding protein; Provisiona | 85.9 | |
| KOG3002 | 299 | consensus Zn finger protein [General function pred | 84.87 | |
| PRK04023 | 1121 | DNA polymerase II large subunit; Validated | 84.13 | |
| KOG1814 | 445 | consensus Predicted E3 ubiquitin ligase [Posttrans | 83.62 | |
| KOG2272 | 332 | consensus Focal adhesion protein PINCH-1, contains | 82.89 | |
| PF03854 | 50 | zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc | 82.83 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.57 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 81.56 | |
| KOG4185 | 296 | consensus Predicted E3 ubiquitin ligase [Posttrans | 80.51 |
| >KOG1940 consensus Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=443.30 Aligned_cols=247 Identities=47% Similarity=0.943 Sum_probs=225.4
Q ss_pred hhhHHhhhhccCCCccCCCCCCCCCCCCCCccCccccccccccccccccccccccCCcccCcccccccCCCccccccccc
Q 000906 967 MSRWITGQQMTHSKVTISSSGEEIPGQQPSYRDTEKLIFGCKHYKRNCKLVATCCNSLYTCIRCHDEVADHALDRKSISE 1046 (1231)
Q Consensus 967 ~sr~~~~q~~~~~~~~~~~~~~~~~~~~psy~d~~~~~~GC~HY~R~ckL~cpCC~k~YpCR~CHDe~~dH~ldR~~~~~ 1046 (1231)
|+||.+.|+....... ...+..+.+.|+...++||+||+|+|++++|||++||+||+||++..+|.++|+.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s~~h~~~r~~v~~ 74 (276)
T KOG1940|consen 1 MSRLAADQSFLEEFAQ------ALSSIHSDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNESEDHDLDRKTVYE 74 (276)
T ss_pred CccchhhhhhhHHHHh------hhhhcccccccccccccCCchhhhccccccccccceeeeEEecChhhhcccchhhhhh
Confidence 3566666655433222 1223457888999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCccCCCccCCcccceEecCccccccCC-CCcccCCCCCccccCCCCCcccccCCCCcccccccc-cc
Q 000906 1047 MMCMKCLIIQPVGSTCSTTSCKNFSMARYYCRICKLFDDE-REIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSL-QV 1124 (1231)
Q Consensus 1047 m~C~~C~~~Qp~~~~C~~~sC~g~~fa~Y~C~iCkl~Ddd-k~~YHC~~CgICRvG~gL~~d~fHC~~Cn~C~s~~l-~~ 1124 (1231)
|+||.|.++|++++.|.+ | +..+++|||.+|++||++ ..||||+.|||||+|.++ |||||++|+.|++..+ ..
T Consensus 75 ~~C~~C~~~q~~~~~c~~--c-~~~~g~~~c~~C~l~dd~~~~~~hC~~C~icr~g~~~--~~fhc~~c~~c~~~~~~~~ 149 (276)
T KOG1940|consen 75 LLCMKCRKIQPVGQICSN--C-HVELGEYYCLICKLFDDDPSKQYHCDLCGICREGLGL--DFFHCKKCKACLSAYLSNW 149 (276)
T ss_pred hhhhhHHhhhhhhhcccc--c-hhhhhhhcCcccccccccccceecccccccccccccc--chhHHhhhHhHHhhhcccc
Confidence 999999999999999988 8 888999999999999988 599999999999999775 9999999999999998 45
Q ss_pred cccccCCCCCCCcccccccccCCCCceEcCcCCcccHHhHHHhhccCCCCCCCCccccChHHHHHHhHHHHhhcCCChhh
Q 000906 1125 HICREKSFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSLGDMKVYFSMLDALLAEEKMPPEY 1204 (1231)
Q Consensus 1125 HkC~E~s~e~~CPIClE~Lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPICRksv~dm~~~f~~LD~eia~qpmPeey 1204 (1231)
|+|+|++.+.+||||.++||++...+..++|||.+|..||+++...+|+||+|.+ ++||..+|+++|.+|+.+|||++|
T Consensus 150 H~c~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~~~~~~~d~~l~~~~~p~~y 228 (276)
T KOG1940|consen 150 HKCVERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMSHYFRKLDKELAGSPMPEEY 228 (276)
T ss_pred cchhhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHHHHHHHHHHHHHhcCCCCchh
Confidence 9999999999999999999999999999999999999999999877799999999 999999999999999999999999
Q ss_pred hcccCCCCCcccCCCCCCCCCcccc
Q 000906 1205 LGQTQVRNPLIPLNVANVSPDIFFD 1229 (1231)
Q Consensus 1205 r~~~q~~~~~i~Cn~C~ss~~~~f~ 1229 (1231)
++++ .++.||+||...++-|+
T Consensus 229 ~~~~----~~i~cndC~~~~~~k~~ 249 (276)
T KOG1940|consen 229 KNKT----QDILCNDCGSGTNVKYH 249 (276)
T ss_pred hchh----heeeccCCCCCCcccee
Confidence 9988 48999999999988775
|
|
| >PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues | Back alignment and domain information |
|---|
| >COG4357 Zinc finger domain containing protein (CHY type) [Function unknown] | Back alignment and domain information |
|---|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK10992 iron-sulfur cluster repair di-iron protein; Provisional | Back alignment and domain information |
|---|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein | Back alignment and domain information |
|---|
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK10992 iron-sulfur cluster repair di-iron protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
| >PRK13276 cell wall biosynthesis protein ScdA; Provisional | Back alignment and domain information |
|---|
| >PRK13276 cell wall biosynthesis protein ScdA; Provisional | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
| >KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >COG3945 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG3945 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] | Back alignment and domain information |
|---|
| >PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A | Back alignment and domain information |
|---|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
| >KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
| >KOG1940 consensus Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
| >COG2461 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length | Back alignment and domain information |
|---|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PHA02862 5L protein; Provisional | Back alignment and domain information |
|---|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK14890 putative Zn-ribbon RNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >KOG3002 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK04023 DNA polymerase II large subunit; Validated | Back alignment and domain information |
|---|
| >KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1231 | ||||
| 2k2c_A | 137 | Solution Nmr Structure Of N-Terminal Domain Of Huma | 9e-26 | ||
| 2dkt_A | 143 | Solution Structure Of The Chy Zinc Finger Domain Of | 8e-22 | ||
| 2jrj_A | 52 | Solution Structure Of The Human Pirh2 Ring-H2 Domai | 2e-06 | ||
| 2ecm_A | 55 | Solution Structure Of The Ring Domain Of The Ring F | 6e-06 | ||
| 2ect_A | 78 | Solution Structure Of The Zinc Finger, C3hc4 Type ( | 3e-05 |
| >pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137 | Back alignment and structure |
|
| >pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143 | Back alignment and structure |
| >pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target Ht2b Length = 52 | Back alignment and structure |
| >pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55 | Back alignment and structure |
| >pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 5e-51
Identities = 57/143 (39%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 990 IPGQQPSYRDTEKLIFGCKHYKRNCKLVATCCNSLYTCIRCHDEVADHALDRKSISEMMC 1049
G R+ + GC+HY R C L A CC+ LYTC CHD DH LDR + E+ C
Sbjct: 2 SSGSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQC 61
Query: 1050 MKCLIIQPVGSTCSTTSCKNFSMARYYCRICKLFDDEREIYHCPYCNLCRVGKGLGIDYF 1109
+ C +Q TC C YYC IC LFD ++ YHC C +CR+ G D+F
Sbjct: 62 INCEKLQHAQQTC--EDCSTL-FGEYYCSICHLFDKDKRQYHCESCGICRI--GPKEDFF 116
Query: 1110 HCMNCNACMSRSLQ-VHICREKS 1131
HC+ CN C++ +L+ H C E
Sbjct: 117 HCLKCNLCLTTNLRGKHKCIESG 139
|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 | Back alignment and structure |
|---|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 | Back alignment and structure |
|---|
| >2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 | Back alignment and structure |
|---|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114 | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1231 | ||||
| d2dkta2 | 56 | g.93.1.1 (A:82-137) RING finger and CHY zinc finge | 7e-23 | |
| d2dkta1 | 74 | g.89.1.1 (A:8-81) RING finger and CHY zinc finger | 1e-17 | |
| d1chca_ | 68 | g.44.1.1 (A:) Immediate early protein, IEEHV {Equi | 5e-08 | |
| d1iyma_ | 55 | g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati | 6e-07 | |
| d3dplr1 | 88 | g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S | 2e-05 | |
| d1bora_ | 56 | g.44.1.1 (A:) Acute promyelocytic leukaemia proto- | 1e-04 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 1e-04 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 1e-04 | |
| d1ur6b_ | 52 | g.44.1.1 (B:) Not-4 N-terminal RING finger domain | 1e-04 | |
| d2baya1 | 56 | g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { | 7e-04 |
| >d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: Zinc hairpin stack superfamily: Zinc hairpin stack family: Zinc hairpin stack domain: RING finger and CHY zinc finger domain-containing protein 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.5 bits (225), Expect = 7e-23
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 1074 RYYCRICKLFDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSLQV-HICRE 1129
YYC IC LFD ++ YHC C +CR+G D+FHC+ CN C++ +L+ H C E
Sbjct: 2 EYYCSICHLFDKDKRQYHCESCGICRIGPKE--DFFHCLKCNLCLTTNLRGKHKCIE 56
|
| >d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74 | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1231 | |||
| d2dkta2 | 56 | RING finger and CHY zinc finger domain-containing | 99.69 | |
| d2dkta1 | 74 | RING finger and CHY zinc finger domain-containing | 99.32 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.75 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.71 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 98.61 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.54 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.44 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.43 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.08 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 98.02 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 97.87 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 97.77 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 97.71 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 97.66 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 97.65 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 97.44 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 97.2 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 97.07 |
| >d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Zinc hairpin stack superfamily: Zinc hairpin stack family: Zinc hairpin stack domain: RING finger and CHY zinc finger domain-containing protein 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=2.3e-18 Score=153.39 Aligned_cols=55 Identities=47% Similarity=1.268 Sum_probs=52.4
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 41716755555699970038999754458988844324888864334443-4100125
Q 000906 1073 ARYYCRICKLFDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSL-QVHICRE 1129 (1231)
Q Consensus 1073 a~Y~C~iCkl~Dddk~~yHC~~CgICRvG~gL~~d~fHC~~C~~C~s~~l-~~HkC~E 1129 (1231)
|+|||+|||||||+|++|||++|||||||++ ++||||++|++|+++++ ++|+|+|
T Consensus 1 G~YfC~iC~l~dddk~~yHC~~CgiCRvG~~--~~ffHC~~C~~C~~~~l~~~H~CiE 56 (56)
T d2dkta2 1 GEYYCSICHLFDKDKRQYHCESCGICRIGPK--EDFFHCLKCNLCLTTNLRGKHKCIE 56 (56)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESCG--GGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9657873775468887665999980023588--6643267254643754577852369
|
| >d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
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| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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