Citrus Sinensis ID: 000911

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------123

MEEVIFSQEEDELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGVGVGVLNNTSKITNDDGEKWPTATDEHASYSSLVGSWMLLLKLAT

ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHcccccccccccHHHHHcccccccccccccHHHccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc

cccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHcccccccccccccHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccEEEEEEHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHcEEEEcccccHHHHHHHHHHHHHHHHHcccccHHccccHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHcc

MEEVIfsqeedelDCKEIVLQKYFLQEWKIVKSLLDEIVsygrvpdtssvHKIRSIMDKYQeqgqlvepyLENIVSPLMSIIRSKtielgadsdEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKChdtasvtslrqestgemEAKCVILLWLSILVLvpfdissvdtsiannenlgqnepapLVMRILGFCKDYLSNAGPMRTIAGLLLAKlltrpdmptaFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDAStmlksgsaarsPLLRKYLMKLTQRlgltclprctsaWRYVIRTSslgenmssraafreidqcDHSVVDSLkseqnrncpedegmdvpDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLElfspgegdgswhgGCLALAELARRglllpsslpkvVPVIVKALHYdirrgshsvgshvRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQEnvgrqgnyphgidivntaDYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKichwltpftlstdlctrhgatLAAGEVVLALCKYdyalpadkqkivagivpgiekarlyrgkggEIMRSAVSRFIECISLsfvslpekTKRSLLDTLNenlrhpnsqIQNAAVKALKPFVQTYMVAADSGVVGGISLKYmeqltdpnpairrgsalalgvLPYELLANSWRDVLLKLCSCClieenpedrdteARVNAVRGLVSVCETLTQsqenslihsgedEISLFHLIKNEVMTSLFKAlddysvdnrgdvgsWVREAAVDGLEICTYILckrdfvpspekpqevkselpgnvtaekTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNktifvpiphrekleeivpneadlnwgvpafsyprfVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQagetedldarssreYMLYNDILWVLQHyrrcdrviVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIasvsdpisTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQngnileedkTEKALEIIGETcwegdmnvvkHQRLELYNLAGVGVGvlnntskitnddgekwptatdehasYSSLVGSWMLLLKLAT

meevifsqeedeldcKEIVLQKYFLQEWKIVKSLLDEIVSygrvpdtssvhKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTslrqestgeMEAKCVILLWLSILVLVPFDISSVDTSIAnnenlgqnepAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDAstmlksgsaarspLLRKYLMKLTQRLGltclprctsaWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSlkseqnrncpedegmdvPDILEEIIEILlsglrdtdTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRrgshsvgshvrDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFqenvgrqgnypHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYAlpadkqkivagivpgiekARLYRGKGGEIMRSAVSRFIECISLsfvslpekTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEenpedrdtearVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYnktifvpiphreKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGetedldarssrEYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQngnileedkTEKALEIIGETCWEGDMNVVKHQRLELYNLAGVGVGVLNNTSkitnddgekwptatdehasysslvgsWMLLLKLAT

MEEVIFSQEEDELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEilkiikpiciiiYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCvillwlsilvlvPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDileeiieillSGLRDTDTVVRWSAAKGIGRITSCLTsslseevfssvlelfsPGEGDGSWHggclalaelarrglllpsslpkvvpvivkALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRvllsglvisigglQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGVGVGVLNNTSKITNDDGEKWPTATDEHASYSSLVGSWMLLLKLAT

************LDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSL******EMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSL***************************************VPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKT***LLDT***********IQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEE********ARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFV*****************TAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGVGVGVLNNTSKITN*****WPT****HASYSSLVGSWMLLLK***

****I***EEDELDCKEIVLQKYFLQEWKIVKSLLDEIV********SSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGA*SDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTAS*****QESTGEMEAKCVILLWLSILVLVPFDISSVDTS***********PAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGE******************************PEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETE***ARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGV******************************SLVGSWMLLLKLAT

**********DELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVP***********LPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGVGVGVLNNTSKITNDDGEKWPTATDEHASYSSLVGSWMLLLKLAT

***********ELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTA********STGEMEAKCVILLWLSILVLVPFDISSVDTS***********PAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSS******************************GMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDF****************NVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGVGVG***********************ASYSSLVGSWMLLLKLAT

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MEEVIFSQEEDELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIxxxxxxxxxxxxxxxxxxxxxILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGVGVGVLNNTSKITNDDGEKWPTATDEHASYSSLVGSWMLLLKLAT

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1229	2.2.26 [Sep-21-2011]
Q9BTW9		1192	Tubulin-specific chaperon	yes	no	0.855	0.881	0.347	1e-174
Q8BYA0		1196	Tubulin-specific chaperon	yes	no	0.857	0.881	0.350	1e-173
Q28205		1199	Tubulin-specific chaperon	yes	no	0.854	0.875	0.344	1e-170
Q5ZI87		1019	Tubulin-specific chaperon	yes	no	0.715	0.862	0.366	1e-155
Q55G93		1480	Tubulin-specific chaperon	yes	no	0.236	0.196	0.381	6e-59
Q10197		1105	Tubulin-folding cofactor	yes	no	0.398	0.443	0.258	1e-41
P40987		1014	Chromosome instability pr	yes	no	0.135	0.164	0.251	9e-07

>sp\|Q9BTW9\|TBCD_HUMAN Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD PE=1 SV=2	Back alignment and function desciption

 Score =  613 bits (1582), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 421/1211 (34%), Positives = 637/1211 (52%), Gaps = 160/1211 (13%)

Query: 49   SVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIY 108
            ++ + R IMDKYQEQ  L++P+LE +++ L+ I++ +T            ++      +Y
Sbjct: 56   ALERFRVIMDKYQEQPHLLDPHLEWMMNLLLDIVQDQT--------SPASLVHLAFKFLY 107

Query: 109  TLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLS 168
             +  V GYK  ++ FPH+V+D+E  + L         VT    +     E + ++LLWLS
Sbjct: 108  IITKVRGYKTFLRLFPHEVADVEPVLDL---------VTIQNPKDHEAWETRYMLLLWLS 158

Query: 169  ILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLL 228
            +  L+PFD S +D ++      GQ   + ++ RIL   + YL  +   R  A +L+++ +
Sbjct: 159  VTCLIPFDFSRLDGNLLTQP--GQARMS-IMDRILQIAESYLIVSDKARDAAAVLVSRFI 215

Query: 229  TRPDMP-TAFASFVEWTHEVLSSVTDDVMNH-FRLLGVVEALAAIFKAGGRKVLLDVIPV 286
            TRPD+  +  A F++W+   L+  +   M     + G ++ALA IFK G R+   D +P 
Sbjct: 216  TRPDVKQSKMAEFLDWSLCNLARSSFQTMQGVITMDGTLQALAQIFKHGKRE---DCLPY 272

Query: 287  VWNDASTMLKSGSAARSP-----LLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGEN 341
                A+T+L+     R P     LLRK  +KL QRLGLT L    +AWRY     SL  N
Sbjct: 273  ----AATVLRCLDGCRLPESNQTLLRKLGVKLVQRLGLTFLKPKVAAWRYQRGCRSLAAN 328

Query: 342  MSSRAAFREIDQCDHSVVDSLKSEQNR---NCPEDEGMDVPDILEEIIEILLSGLRDTDT 398
            +               ++   +SEQ        +DE  DVP+ +E +IE LL GL+D DT
Sbjct: 329  LQ--------------LLTQGQSEQKPLILTEDDDEDDDVPEGVERVIEQLLVGLKDKDT 374

Query: 399  VVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458
            VVRWSAAKGIGR+   L  +L+++V  SVL+ FS  E D +WHGGCLALAEL RRGLLLP
Sbjct: 375  VVRWSAAKGIGRMAGRLPRALADDVVGSVLDCFSFQETDKAWHGGCLALAELGRRGLLLP 434

Query: 459  SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHL 518
            S L  VV VI+KAL YD +RG+ SVG++VRDAA YVCWAF RAY   +++  +  I+  L
Sbjct: 435  SRLVDVVAVILKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSAL 494

Query: 519  LTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIA 578
            +  A +DR++NCRRAA+AAFQENVGRQG +PHGIDI+ TADYF++ +R   +L ++VFIA
Sbjct: 495  VIAAVFDRDINCRRAASAAFQENVGRQGTFPHGIDILTTADYFAVGNRSNCFLVISVFIA 554

Query: 579  QYEGYLYPFVDELLYNKICHW------------------------------LTPFTLSTD 608
             +  Y  P +D L+  KI HW                              L   TLS D
Sbjct: 555  GFPEYTQPMIDHLVTMKISHWDGVIRELAARALHNLAQQAPEFSATQVFPRLLSMTLSPD 614

Query: 609  LCTRHGATLAAGEVVLALCKYDYALPADKQKIVAG-----IVPGIEK-------ARLYRG 656
            L  RHG+ LA  EV  AL    Y L A + + V        V G+++        +LYRG
Sbjct: 615  LHMRHGSILACAEVAYAL----YKLAAQENRPVTDHLDEQAVQGLKQIHQQLYDRQLYRG 670

Query: 657  KGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDT----LNENLRH-------PNSQIQN 705
             GG++MR AV   IE +SLS +     T   ++D     +N+ LRH          Q+++
Sbjct: 671  LGGQLMRQAVCVLIEKLSLSKMPFRGDT---VIDGWQWLINDTLRHLHLISSHSRQQMKD 727

Query: 706  AAVKALKPFVQTYMVA----ADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELL 761
            AAV AL      Y +     AD  +   +  +Y+ +L +P    R G +LALG LP  LL
Sbjct: 728  AAVSALAALCSEYYMKEPGEADPAIQEELITQYLAELRNPEEMTRCGFSLALGALPGFLL 787

Query: 762  ANSWRDVLLKLCSCCLIEENPEDRD-TEARVNAVRGLVSVCETLTQSQENSLIHSGEDEI 820
                + VL  L +  +   +PED    E+R + ++ +  +C+T+        + +G  + 
Sbjct: 788  KGRLQQVLTGLRA--VTHTSPEDVSFAESRRDGLKAIARICQTVG-------VKAGAPDE 838

Query: 821  SLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKP 880
            ++     +++  +L   +DDY+ D+RGDVG+WVR+AA+  L   T +L +          
Sbjct: 839  AVCGENVSQIYCALLGCMDDYTTDSRGDVGTWVRKAAMTSLMDLTLLLAR---------- 888

Query: 881  QEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFV 940
                        ++  L +A+    ++  + +QA EK+D+ R  AA V   +L+  +  +
Sbjct: 889  ------------SQPELIEAHTCERIMCCVAQQASEKIDRFRAHAASVFLTLLHFDSPPI 936

Query: 941  P-IPHREKLEEIVPNE--ADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQES 997
            P +PHR +LE++ P    A +NW  P+ ++PR   LL    Y   +L GLV+S+GGL ES
Sbjct: 937  PHVPHRGELEKLFPRSDVASVNWSAPSQAFPRITQLLGLPTYRYHVLLGLVVSLGGLTES 996

Query: 998  LRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLF 1057
              + S  +L EY++ G   D  A  S        +L + +     +RV VP LKT++ + 
Sbjct: 997  TIRHSTQSLFEYMK-GIQSDPQALGS----FSGTLLQIFEDNLLNERVSVPLLKTLDHVL 1051

Query: 1058 SK---RIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRA 1114
            +     IF   E H   F   +L     E+K +KD  KL +GIA+   +      +  +A
Sbjct: 1052 THGCFDIFTTEEDHP--FAVKLLALCKKEIKNSKDIQKLLSGIAVFCEMVQFPGDVRRQA 1109

Query: 1115 FSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKH 1174
               L   L HRFP IRK +A QVY  LL   +++  D  ++ + ++ +T W+ ++ VV+ 
Sbjct: 1110 LLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVRE 1169

Query: 1175 QRLELYNLAGV 1185
            QR  L +L GV
Sbjct: 1170 QRNRLCDLLGV 1180

Tubulin-folding protein; involved in the first step of the tubulin folding pathway. Modulates microtubule dynamics by capturing GTP-bound beta-tubulin (TUBB). Acts as a GTPase-activating protein (GAP) for ARL2. Its ability to interact with beta tubulin is regulated via its interaction with ARL2. Induces microtubule disruption in absence of ARL2. Increases degradation of beta tubulin, when overexpressed in polarized cells. Promotes epithelial cell detachment, a process antagonized by ARL2. Induces tight adherens and tight junctions disassembly at the lateral cell membrane.
Homo sapiens (taxid: 9606)

>sp\|Q8BYA0\|TBCD_MOUSE Tubulin-specific chaperone D OS=Mus musculus GN=Tbcd PE=2 SV=1	Back alignment and function description

>sp\|Q28205\|TBCD_BOVIN Tubulin-specific chaperone D OS=Bos taurus GN=TBCD PE=1 SV=1	Back alignment and function description

>sp\|Q5ZI87\|TBCD_CHICK Tubulin-specific chaperone D OS=Gallus gallus GN=TBCD PE=2 SV=1	Back alignment and function description

>sp\|Q55G93\|TBCD_DICDI Tubulin-specific chaperone D OS=Dictyostelium discoideum GN=tbcd PE=3 SV=2	Back alignment and function description

>sp\|Q10197\|ALP1_SCHPO Tubulin-folding cofactor D OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp1 PE=1 SV=3	Back alignment and function description

>sp\|P40987\|CIN1_YEAST Chromosome instability protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CIN1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1229
255541236		1260	beta-tubulin cofactor d, putative [Ricin	0.982	0.958	0.748	0.0
359489443		1269	PREDICTED: tubulin-specific chaperone D	0.976	0.945	0.755	0.0
296089188		1255	unnamed protein product [Vitis vinifera]	0.969	0.949	0.757	0.0
224129966		1253	tubulin folding cofactor [Populus tricho	0.984	0.965	0.732	0.0
356534400		1266	PREDICTED: tubulin-specific chaperone D-	0.986	0.957	0.704	0.0
356574161		1257	PREDICTED: tubulin-specific chaperone D-	0.982	0.960	0.705	0.0
359489441		1228	PREDICTED: tubulin-specific chaperone D	0.943	0.943	0.725	0.0
449454646		1270	PREDICTED: tubulin-specific chaperone D-	0.980	0.948	0.694	0.0
297820928		1255	tubulin folding cofactor D [Arabidopsis	0.968	0.948	0.698	0.0
186511249		1254	armadillo/beta-catenin-like repeat-conta	0.968	0.948	0.698	0.0

>gi\|255541236\|ref\|XP_002511682.1\| beta-tubulin cofactor d, putative [Ricinus communis] gi\|223548862\|gb\|EEF50351.1\| beta-tubulin cofactor d, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1868 bits (4839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 935/1249 (74%), Positives = 1064/1249 (85%), Gaps = 41/1249 (3%)

Query: 8    QEEDELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQGQLV 67
            +E+DE   KE VLQKYFLQEWK+VKSLLD+IV  GRV D+SSV+KIRSI+DKYQ++GQL+
Sbjct: 14   EEDDEHGSKERVLQKYFLQEWKLVKSLLDDIVLNGRVTDSSSVNKIRSILDKYQQEGQLL 73

Query: 68   EPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQV 127
            EPYLE IV+PLMSI+R+KTI+LG  ++EIL++IKPICIIIY LVTVCGYK+VIKFFPHQV
Sbjct: 74   EPYLETIVTPLMSIVRTKTIDLGVATNEILEVIKPICIIIYCLVTVCGYKSVIKFFPHQV 133

Query: 128  SDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANN 187
            SDLELAVSLLEKCHDTAS TSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIAN+
Sbjct: 134  SDLELAVSLLEKCHDTASATSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANS 193

Query: 188  EN-LGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHE 246
             N LG+ EPAPLV+R+L F KDYLSNAGPMRT+AGLLL+KLLTRPDMP AF SF EWTHE
Sbjct: 194  SNDLGKLEPAPLVLRMLKFSKDYLSNAGPMRTMAGLLLSKLLTRPDMPLAFTSFTEWTHE 253

Query: 247  VLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLL 306
            VLSS TDDVM+HF+LLGVVEALAAIFKAGGRKVLLDV+P+VWND S+M+KSG AARSPLL
Sbjct: 254  VLSSGTDDVMSHFQLLGVVEALAAIFKAGGRKVLLDVVPIVWNDTSSMVKSGYAARSPLL 313

Query: 307  RKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQ 366
            RKYL+KLTQR+GLTCLP  + AW YV RTSSL EN+S  A+ RE  Q  +  V+S + E+
Sbjct: 314  RKYLVKLTQRIGLTCLPHRSPAWCYVGRTSSLRENVSVSASKREWSQGMN--VNSTEPEE 371

Query: 367  NRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSS 426
              +  ++E MDVP+I+EEIIEILLSGLRDTDTVVRWSAAKG+GRITS LTS L EEV SS
Sbjct: 372  IADYMQEEDMDVPEIVEEIIEILLSGLRDTDTVVRWSAAKGVGRITSRLTSVLLEEVLSS 431

Query: 427  VLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSH 486
            VLELFSPGEGDGSWHG CLALAELARRGLLLP+ LPKVVP +VKALHYDIRRG HSVGSH
Sbjct: 432  VLELFSPGEGDGSWHGACLALAELARRGLLLPAGLPKVVPFVVKALHYDIRRGPHSVGSH 491

Query: 487  VRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQG 546
            VRDAAAYVCWAFGRAY HTDMRN+LEQ+APHLLTVACYDREVNCRRAAAAAFQENVGRQG
Sbjct: 492  VRDAAAYVCWAFGRAYYHTDMRNVLEQLAPHLLTVACYDREVNCRRAAAAAFQENVGRQG 551

Query: 547  NYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHW------- 599
            NYPHGIDIVN ADYFSLSSRV SYLHVAV +AQYEGYLYPF +ELLYNKI HW       
Sbjct: 552  NYPHGIDIVNIADYFSLSSRVNSYLHVAVSVAQYEGYLYPFAEELLYNKIGHWDKSLREL 611

Query: 600  -----------------------LTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPAD 636
                                   + PFTLS+DLC RHGATLA GEVVLAL ++DY L +D
Sbjct: 612  AAEALSALVKYDPEYFASFVLEKMIPFTLSSDLCMRHGATLAVGEVVLALHQHDYTLASD 671

Query: 637  KQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENL 696
            +Q  VAGIVP IEKARLYRGKGGEIMRSAVSRFIECISL  ++L EK K SLLDTLN+N+
Sbjct: 672  RQNSVAGIVPAIEKARLYRGKGGEIMRSAVSRFIECISLCHLTLTEKIKSSLLDTLNDNM 731

Query: 697  RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL 756
            RHPNSQIQNAAVKAL+ FVQ Y+V+  SG  GGI+ KY+EQLTD N A+RRGSALALGVL
Sbjct: 732  RHPNSQIQNAAVKALEHFVQAYLVSGKSGGAGGITSKYLEQLTDQNVAVRRGSALALGVL 791

Query: 757  PYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSG 816
            PYE LA+ W+ VLLKLCS CLIE++PEDRD EARVNAV+GL+SVC+TLT+++E S I SG
Sbjct: 792  PYECLADQWKYVLLKLCSSCLIEDDPEDRDAEARVNAVKGLISVCKTLTRARECSDICSG 851

Query: 817  EDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPS 876
            ED +SL+HLIKNEVM+SLFKALDDYSVDNRGDVGSWVREAA++GLE CT+ILC  D   S
Sbjct: 852  EDRMSLWHLIKNEVMSSLFKALDDYSVDNRGDVGSWVREAAMEGLETCTFILCLMD---S 908

Query: 877  PEKPQEVKS--ELPGNVTAEKTL--FDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRI 932
              K   V+S  E+P     E+ L  FDANLAT ++  IVKQAVEKMDK+REAAAKVL+RI
Sbjct: 909  ARKSNRVQSLLEMPEGAENEQRLLFFDANLATQVIEVIVKQAVEKMDKIREAAAKVLQRI 968

Query: 933  LYNKTIFVP-IPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISI 991
            LYNKTIFVP IPHREKLEE+VPNEADL W VP  SYPRF+ LL+FSCYSR +LSGLV+SI
Sbjct: 969  LYNKTIFVPFIPHREKLEEVVPNEADLQWSVPTISYPRFIQLLQFSCYSRAVLSGLVVSI 1028

Query: 992  GGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLK 1051
            GGLQ+SLRKASISALL+YLQA ETED + R SREYM+  DILWVLQ Y++CDRVIVPTLK
Sbjct: 1029 GGLQDSLRKASISALLDYLQAVETEDPNERRSREYMVSADILWVLQQYKKCDRVIVPTLK 1088

Query: 1052 TIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPIS 1111
            TIE LFSK+IFL+MEVHT IFCAGVLDSLA ELK +KDFSKLYAGIAILGYIAS+SDP++
Sbjct: 1089 TIEILFSKKIFLDMEVHTSIFCAGVLDSLAAELKGSKDFSKLYAGIAILGYIASLSDPVN 1148

Query: 1112 TRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNV 1171
            +RAF++L+ FL HR+PKIRKASAEQVYLVLLQNGN++ EDK E+ALEII +TCW+GD+ V
Sbjct: 1149 SRAFTHLVTFLCHRYPKIRKASAEQVYLVLLQNGNLVPEDKIERALEIISDTCWDGDIEV 1208

Query: 1172 VKHQRLELYNLAGVGVGVLNNTSKITNDDGEKWPTATDEHASYSSLVGS 1220
             KH+R+ELY +AG+ +G L  +    ++ G +  T  DE+ASYSSLVGS
Sbjct: 1209 AKHRRIELYEIAGLDLGQLPRSRDAVSNKGRERSTPNDENASYSSLVGS 1257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359489443\|ref\|XP_002274584.2\| PREDICTED: tubulin-specific chaperone D isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296089188\|emb\|CBI38891.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224129966\|ref\|XP_002320715.1\| tubulin folding cofactor [Populus trichocarpa] gi\|222861488\|gb\|EEE99030.1\| tubulin folding cofactor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356534400\|ref\|XP_003535743.1\| PREDICTED: tubulin-specific chaperone D-like [Glycine max]	Back alignment and taxonomy information

>gi\|356574161\|ref\|XP_003555220.1\| PREDICTED: tubulin-specific chaperone D-like [Glycine max]	Back alignment and taxonomy information

>gi\|359489441\|ref\|XP_003633922.1\| PREDICTED: tubulin-specific chaperone D isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449454646\|ref\|XP_004145065.1\| PREDICTED: tubulin-specific chaperone D-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297820928\|ref\|XP_002878347.1\| tubulin folding cofactor D [Arabidopsis lyrata subsp. lyrata] gi\|297324185\|gb\|EFH54606.1\| tubulin folding cofactor D [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|186511249\|ref\|NP_191633.3\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi\|20514263\|gb\|AAM22960.1\|AF486851_1 tubulin folding cofactor D [Arabidopsis thaliana] gi\|332646581\|gb\|AEE80102.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1229
TAIR\|locus:2101856		1254	TTN1 "TITAN 1" [Arabidopsis th	0.481	0.472	0.655	0.0
MGI\|MGI:1919686		1196	Tbcd "tubulin-specific chapero	0.331	0.340	0.378	2.5e-119
UNIPROTKB\|Q9BTW9		1192	TBCD "Tubulin-specific chapero	0.329	0.339	0.367	4.3e-119
UNIPROTKB\|E1BU18		1199	TBCD "Tubulin-specific chapero	0.334	0.342	0.378	2e-117
UNIPROTKB\|H9GWC8		1138	TBCD "Uncharacterized protein"	0.331	0.357	0.361	4.6e-116
UNIPROTKB\|F1RZZ1		1198	TBCD "Uncharacterized protein"	0.326	0.334	0.365	2.3e-115
UNIPROTKB\|Q28205		1199	TBCD "Tubulin-specific chapero	0.327	0.336	0.364	4e-115
UNIPROTKB\|Q5ZI87		1019	TBCD "Tubulin-specific chapero	0.334	0.403	0.377	3.6e-106
FB\|FBgn0027509		1189	CG7261 [Drosophila melanogaste	0.261	0.269	0.370	1.7e-74
WB\|WBGene00008887		1232	F16D3.4 [Caenorhabditis elegan	0.461	0.460	0.263	2.7e-49

TAIR\|locus:2101856 TTN1 "TITAN 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1940 (688.0 bits), Expect = 0., Sum P(2) = 0.
 Identities = 390/595 (65%), Positives = 443/595 (74%)

Query:     5 IFSQEEDELDCKEIVLQKYFLQEWKIVKSLLDEIVSYGRVPDTSSVHKIRSIMDKYQEQG 64
             I  +E+DE D KE VLQ+YFLQEWK+VKSLLD+IVS GRV D +SVHKIRSIMDKYQEQG
Sbjct:    21 IEEEEDDEHDSKERVLQRYFLQEWKLVKSLLDDIVSNGRVVDPTSVHKIRSIMDKYQEQG 80

Query:    65 QLVEPYLENIVSPLMSIIRSKTIELGADSDEXXXXXXXXXXXXYTLVTVCGYKAVIKFFP 124
             QLVEPYLE+IVSPLM IIRSKT++L A  DE            Y LVTVCGYKAVIKFFP
Sbjct:    81 QLVEPYLESIVSPLMFIIRSKTVDLEAKPDEILEIIKPISIIIYALVTVCGYKAVIKFFP 140

Query:   125 HQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCXXXXXXXXXXXXPFDISSVDTSI 184
             HQVSDLELAV LLEKCH T SV++LRQESTGEMEAKC            PFDISSVDTSI
Sbjct:   141 HQVSDLELAVLLLEKCHSTNSVSALRQESTGEMEAKCVTLLWLSILVLVPFDISSVDTSI 200

Query:   185 ANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWT 244
             A+++  G ++ APLV++ILGFCKDYL +AGPMR I+GLLL+KLLTRPDM  AF+SF EWT
Sbjct:   201 ADDKTFGVDDLAPLVLKILGFCKDYLCSAGPMRRISGLLLSKLLTRPDMGKAFSSFFEWT 260

Query:   245 HEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSP 304
             +EVLS   D V NHFRLLGV+EAL+AIFK   RKVLLDV+P+V ND + + KS +AA+S 
Sbjct:   261 YEVLSCKEDSVTNHFRLLGVMEALSAIFKTASRKVLLDVLPIVLNDVTVLSKSNAAAKSS 320

Query:   305 LLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKS 364
             LLRKYL+KLTQR+GL CLP  + +WRYV +T+SL ENMS+ ++ R     DH+V   L+ 
Sbjct:   321 LLRKYLIKLTQRIGLVCLPHRSPSWRYVAQTASLSENMSTSSSQRLAP--DHTVTAILQP 378

Query:   365 EQNRNCPEDEGMDVPDXXXXXXXXXXSGLRDTDTVVRWSAAKGIGRITSCLTXXXXXXXX 424
             E + +  EDE MDVP+          SGLRDTDTVVRWSAAKGIGR+TS LT        
Sbjct:   379 E-SLDDQEDEDMDVPEILEEIIEMLLSGLRDTDTVVRWSAAKGIGRVTSRLTSVLSDEVL 437

Query:   425 XXXXXXXXPGEGDGSWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALHYDIRRGSHSVG 484
                     PGEGDGSWH                             ALHYD+RRG HSVG
Sbjct:   438 SSVLELFSPGEGDGSWHGGCLALAELARRGLLLPRSFPLVVPVIVKALHYDVRRGPHSVG 497

Query:   485 SHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGR 544
             SHVRDAAAYVCWAFGRAY H DM+N+L+Q+AP LL V  +DREVNCRRAAAAAFQENVGR
Sbjct:   498 SHVRDAAAYVCWAFGRAYSHKDMKNVLDQLAPDLLIVGSFDREVNCRRAAAAAFQENVGR 557

Query:   545 QGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHW 599
             QGNYPHGIDIV+ ADYFSLSSRV SYL VAV IAQYEGYLYPFVDELLYNKICHW
Sbjct:   558 QGNYPHGIDIVSIADYFSLSSRVNSYLQVAVSIAQYEGYLYPFVDELLYNKICHW 612

GO:0005737 "cytoplasm" evidence=ISM

GO:0007017 "microtubule-based process" evidence=RCA;IMP

GO:0000910 "cytokinesis" evidence=IGI;RCA

GO:0006457 "protein folding" evidence=ISS

GO:0007021 "tubulin complex assembly" evidence=ISS

GO:0015631 "tubulin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

MGI\|MGI:1919686 Tbcd "tubulin-specific chaperone d" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BTW9 TBCD "Tubulin-specific chaperone D" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BU18 TBCD "Tubulin-specific chaperone D" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|H9GWC8 TBCD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RZZ1 TBCD "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q28205 TBCD "Tubulin-specific chaperone D" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZI87 TBCD "Tubulin-specific chaperone D" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0027509 CG7261 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00008887 F16D3.4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BYA0	TBCD_MOUSE	No assigned EC number	0.3502	0.8576	0.8812	yes	no
Q28205	TBCD_BOVIN	No assigned EC number	0.3443	0.8543	0.8757	yes	no
Q9BTW9	TBCD_HUMAN	No assigned EC number	0.3476	0.8551	0.8817	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026393001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (1233 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019045001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_19, whole genome shot [...] (113 aa)	•	•	0.594
	GSVIVG00000670001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (231 aa)	•	•	0.433
	GSVIVG00021806001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (426 aa)		•	0.427
	GSVIVG00028583001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (1205 aa)		•	0.420

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1229
pfam12612		194	pfam12612, TFCD_C, Tubulin folding cofactor D C te	9e-53
COG5234		993	COG5234, CIN1, Beta-tubulin folding cofactor D [Po	3e-21

>gnl\|CDD\|221663 pfam12612, TFCD_C, Tubulin folding cofactor D C terminal	Back alignment and domain information

 Score =  183 bits (466), Expect = 9e-53
 Identities = 82/199 (41%), Positives = 121/199 (60%), Gaps = 10/199 (5%)

Query: 899  DANLATNLVAGIVKQAVEKMDKLREAAAKVLRRIL-YNKTIFVP-IPHREKLEEIVPN-- 954
               L  +++ G++KQAVEK+D++R  A K L+R+L ++    +P IPHRE L++I P   
Sbjct: 1    SPELVQSIIGGLLKQAVEKIDRVRAEAGKALQRLLKHSGDPRIPHIPHREPLQDIFPLES 60

Query: 955  EADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGE 1014
            E  LNW  PA  +PR + LL+   Y   LLSGLV+S GGL ESL K+S SALLEYL+   
Sbjct: 61   ETALNWVSPAEYFPRLIQLLQLPWYRESLLSGLVVSAGGLTESLVKSSRSALLEYLR--- 117

Query: 1015 TEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTP-IFC 1073
              +L+  +S    L +D+L +L+   + DRV+VPTLKT++ L    +F    + +   F 
Sbjct: 118  --ELEESTSALRQLLDDLLSILKENLKNDRVVVPTLKTLDFLLDSGVFDEFLLDSNGSFA 175

Query: 1074 AGVLDSLAVELKATKDFSK 1092
              + D +  ELK +KD +K
Sbjct: 176  KKLFDLVQKELKKSKDIAK 194

This domain family is found in eukaryotes, and is typically between 182 and 199 amino acids in length. The family is found in association with pfam02985. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules. Length = 194

>gnl\|CDD\|227559 COG5234, CIN1, Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1229
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	100.0
COG5234		993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	100.0
PF12612		193	TFCD_C: Tubulin folding cofactor D C terminal; Int	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.1
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.91
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.64
PRK09687		280	putative lyase; Provisional	97.57
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.54
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	97.27
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.2
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.07
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	96.53
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.51
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.42
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.27
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	96.14
PRK09687		280	putative lyase; Provisional	95.89
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	95.85
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	95.33
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	95.18
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	95.09
PTZ00429		746	beta-adaptin; Provisional	94.8
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	94.53
KOG0212		675	consensus Uncharacterized conserved protein [Funct	93.83
KOG1242		569	consensus Protein containing adaptin N-terminal re	93.77
KOG1242		569	consensus Protein containing adaptin N-terminal re	93.23
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.9
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	91.71
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	91.0
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	90.55
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	90.39
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	90.3
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	90.19
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	88.99
KOG2062		929	consensus 26S proteasome regulatory complex, subun	88.71
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	88.11
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	87.92
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	86.57
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	85.66
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	85.17
KOG2259		823	consensus Uncharacterized conserved protein [Funct	83.81
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	82.87
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	80.96
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	80.51
PF05004		309	IFRD: Interferon-related developmental regulator (	80.38
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	80.03

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=4.1e-226  Score=2012.89  Aligned_cols=1088  Identities=43%  Similarity=0.665  Sum_probs=989.7

Q ss_pred             ccccccccchhhhhhhHHhHHhhHHHHHHHHHHHH-hcCCCCChhhHHHHHHHHHhhhhcCCCchHhHHhhHHHHHHHHH
Q 000911            5 IFSQEEDELDCKEIVLQKYFLQEWKIVKSLLDEIV-SYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIR   83 (1229)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~F~~e~~ev~~ll~~l~-~~~~~~~~~~~~~~~~ild~yQEqP~LLDp~Le~~i~~L~~~~~   83 (1229)
                      +.+||+||+...++....++ .|+.++++++++|+ ++.+...|...+++..+|++|||||+||||||++++++|+++++
T Consensus         4 ~~ee~~de~~~~~~~~ea~~-~~l~~ir~lld~i~~~~~~~~~e~~~~~~~~vl~kyQeqP~LLDp~L~~~v~~L~~~v~   82 (1133)
T KOG1943|consen    4 LEEEEEDEDLPMSQSLEAFP-CELYQIRSLLDSIRVSGGRTSREVPLEQYSRVLDKYQEQPHLLDPHLESIVPNLLDIVR   82 (1133)
T ss_pred             chhhhccccchhhhHHHHHH-HHHHHHHHHHhhhhhccCCcCCcchhHHHHHHHHHHhhchhhccchHHHHHHHHHHHHH
Confidence            45778887777776555555 79999999999997 66666778889999999999999999999999999999999998


Q ss_pred             hhcccCCCChhHHhhhhHHHHHhheeeeeeecccceeecCCCCccCHHHHHHHHHhcccCccccccccCCcchhHHHHHH
Q 000911           84 SKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVI  163 (1229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~i~~~lY~l~KVRG~K~i~~~fPhev~~Le~vl~~L~~~~~~~s~~~~~~~~~~~We~rYvl  163 (1229)
                      ..+.+.+..        +.+++++|.+|||||||+|+++|||+|+||+|++++|+.+++         ++..+||+||++
T Consensus        83 ~~~~d~~~~--------~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~np---------ss~~~~~~ryil  145 (1133)
T KOG1943|consen   83 KFTIDLGEL--------HLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQNP---------SSFSDWETRYIL  145 (1133)
T ss_pred             hccccchhh--------HHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhccCc---------chHHHHHHHHHH
Confidence            765554433        789999999999999999999999999999999999997776         667899999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCcccccccCCCCCChhHHHHHHHHHHHhhhcCCchhhHHHHHHHHHhcCCChHHHHHHHHHH
Q 000911          164 LLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEW  243 (1229)
Q Consensus       164 LLWLS~Lvl~PFdLs~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~~k~r~aAa~LLsrl~tR~D~~~~l~~fl~w  243 (1229)
                      |+|||++|++||||+++|.+...+       ..+++.||+++++.|+.+.|+.|++||+|++|+++|+|+.+.+.+|++|
T Consensus       146 LlWLsvlllnPF~l~rlD~s~~~~-------kt~~i~rI~~~~~~Yl~~~~~~r~~aalllsk~~sR~D~~~~~~~Fl~~  218 (1133)
T KOG1943|consen  146 LLWLSVLLLNPFDLSRLDESLTFD-------KTNVILRILSFFENYLISSGILRRSAALLLSKLFSRTDVKDLLLSFLDW  218 (1133)
T ss_pred             HHHHHHHHcCCCcccccCcccccC-------CchHHHHHHHHHHHHHhccchhHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence            999999999999999999965422       3478999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccccccccchHHHHHHHHHHHHHHHhcChhhhhhhhHHHHHhh--hhhhccCCCCCchhHHHHHHHHHHHHhhcc
Q 000911          244 THEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDA--STMLKSGSAARSPLLRKYLMKLTQRLGLTC  321 (1229)
Q Consensus       244 ~~~~l~~~~~~~~~~~~~~G~L~~La~ilK~g~r~~l~~~~~~i~~~~--~~l~~s~~~~~~~l~rKl~iKl~qrl~l~~  321 (1229)
                      .++..+   .+.++.|+..|.|..+++|||+++|+++.||++..++..  +..+..+    +.++||+++|++||||+++
T Consensus       219 ~l~~~s---~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~----~~llrKllvKl~QRiGlv~  291 (1133)
T KOG1943|consen  219 LLDCPS---TETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDG----QSLLRKLLVKLVQRIGLVS  291 (1133)
T ss_pred             hhcccc---hhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhccccccccc----HhHHHHHHHHHHHHhhhee
Confidence            554443   233445888899999999999999999999999999833  3333333    4799999999999999999


Q ss_pred             cCCCcccccccccccccccccccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhccCCCCchhH
Q 000911          322 LPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVR  401 (1229)
Q Consensus       322 L~pr~a~WrY~rg~rsL~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~dv~e~vE~iI~~LL~~L~d~dT~VR  401 (1229)
                      ||||+|+|||+||+|||++||+..+.++     +.       +. .-.++++|+.||||+||.||++||++|+|.||.||
T Consensus       292 l~prs~sWrY~rg~rsl~~nl~~~s~~~-----~~-------~~-~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~Vr  358 (1133)
T KOG1943|consen  292 LKPRSPSWRYSRGTRSLASNLDPDSFAP-----SE-------PV-ILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVR  358 (1133)
T ss_pred             cCCCCcchhhhcccchhhhccCcccccc-----Cc-------cc-ccccccccccccHHHHHHHHHHHHHhccCCcchhh
Confidence            9999999999999999999998765422     11       11 11224455566999999999999999999999999


Q ss_pred             HHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCCCCccchHHHHHHhheEeeccccc
Q 000911          402 WSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSH  481 (1229)
Q Consensus       402 wsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p~~L~~vv~~v~~aL~fd~rrg~~  481 (1229)
                      ||||||+|||+.|||+++|||||++|+++|+|.+++++|||+|||||||++||+++|+++++|+|+++|||+||+++|++
T Consensus       359 WSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~  438 (1133)
T KOG1943|consen  359 WSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQH  438 (1133)
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhhccCCCCCCCccceeeecee
Q 000911          482 SVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYF  561 (1229)
Q Consensus       482 SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAfQE~VGR~G~~phGI~Iv~~~Dyf  561 (1229)
                      |+|+||||||||+||||+|+|+|++++|++++|++.|+++|+|||||||||||+|||||+|||||||||||+|++++|||
T Consensus       439 s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~  518 (1133)
T KOG1943|consen  439 SVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYF  518 (1133)
T ss_pred             ccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccchhhHHHHHHHHhccccChHHHHHHHhhcccchh------------------------------ccCCcCCCChhH
Q 000911          562 SLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHW------------------------------LTPFTLSTDLCT  611 (1229)
Q Consensus       562 aV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HW------------------------------ll~~~~s~dl~~  611 (1229)
                      ||++|+|||+++++.||+|++|++|+++||+.+|++||                              +++.+.+.|.+.
T Consensus       519 sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~  598 (1133)
T KOG1943|consen  519 SVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASM  598 (1133)
T ss_pred             hhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHH
Confidence            99999999999999999999999999999999999999                              677888999999


Q ss_pred             HHHHHHHHHHHHHHHhccccc---CChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchh-HHHH
Q 000911          612 RHGATLAAGEVVLALCKYDYA---LPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEK-TKRS  687 (1229)
Q Consensus       612 RHGalLalaei~~al~~~~~~---~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~-~~~~  687 (1229)
                      |||.++|.||++.+++++...   .++..++.+.++++.++++++|||+| ++||+++|++|++++.++.++..+ +.+.
T Consensus       599 r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~-~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~  677 (1133)
T KOG1943|consen  599 RHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQG-TLMRQATLKFIEQLSLSKDRLFQDFVIEN  677 (1133)
T ss_pred             hhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchH-HHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            999999999999999998722   35667777888999999999999998 999999999999999999988776 5688


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCC-chhhhhHHHHHhhcCChHhhhhhHH
Q 000911          688 LLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDP-NPAIRRGSALALGVLPYELLANSWR  766 (1229)
Q Consensus       688 ~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~-~~~~r~G~alaLG~lp~~~l~~~~~  766 (1229)
                      |++++.+++++++ +||++|++|+..++..|+..++++. ..++.+|++.+++. +++.|||+++|+|.+|+++++.+++
T Consensus       678 ~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~-~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q  755 (1133)
T KOG1943|consen  678 WQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEE-APLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQ  755 (1133)
T ss_pred             HHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhh-hHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHH
Confidence            9999999999998 9999999999999999999876554 37999999999854 9999999999999999999999887


Q ss_pred             HHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCC
Q 000911          767 DVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNR  846 (1229)
Q Consensus       767 ~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~R  846 (1229)
                      +++   |++. .+..+.+.|+|+|++.|.+++++|++++.              ..+..+.++++++|++||+|||||+|
T Consensus       756 ~~l---c~~~-l~~~p~d~~a~aR~~~V~al~~v~~~~~~--------------~~~~~~~~k~~e~LL~~lddYttd~r  817 (1133)
T KOG1943|consen  756 EKL---CKLV-LELLPSDAWAEARQQNVKALAHVCKTVTS--------------LLFSESIEKFRETLLNALDDYTTDSR  817 (1133)
T ss_pred             HHH---HHHH-hccCcccccHHHHHHHHHHHHHHHHHHHH--------------hhccccHHHHHHHHHHHHhhcccccC
Confidence            766   3332 22223445999999999999999999872              44567899999999999999999999


Q ss_pred             CcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 000911          847 GDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAA  926 (1229)
Q Consensus       847 GDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~  926 (1229)
                      ||||||||+|||+++..++..+.                        .|++++++.+++++++++||++|||||+|+.|+
T Consensus       818 GDVGswVReaAm~al~~~~~~l~------------------------~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~  873 (1133)
T KOG1943|consen  818 GDVGSWVREAAMKALSSLLDTLS------------------------SPKLLDEDSINRIIRYFVQQAVEKIDRLRELAA  873 (1133)
T ss_pred             ccHHHHHHHHHHHHHHhhhhhhc------------------------CcccccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999875543                        278999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCC-CcchHHHhhhcCCCc-ccCcCCCCChhHHHhhhcCchhhHHHHhhcceeecccCccchHHHHHH
Q 000911          927 KVLRRILYNKTIFVP-IPHREKLEEIVPNEA-DLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASIS 1004 (1229)
Q Consensus       927 ~~l~~ll~~~~~~~p-ip~~~~L~~i~~~~~-~~~w~~~~~~fp~~~~LL~~~~y~~~ll~GLv~S~Gglteslvk~S~~ 1004 (1229)
                      .++.+++++ .|++| +||++.|.++||++. +++|..+...||++++|+.+|.|+++++.|+|+|+||++|++++.|.+
T Consensus       874 ~~~~qi~~~-~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~~f~L~~~Ll~~~~y~~~v~lGl~vs~ggl~esl~k~a~q  952 (1133)
T KOG1943|consen  874 SALNQIVVH-SPSIPHFRHIEKLEEIFPRDYANVPWALPPTLFPLNSSLLELPRYYEEVLLGLVVSLGGLTESLIKLAKQ  952 (1133)
T ss_pred             HHHhceeec-CCCCCcchHHHHHHhhcCcccccCCCcccchhhhHHHHHHhhHHHHHHHhhhhHHHhhhhHHHHHHHHHH
Confidence            999999999 59999 999999999999654 789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccccchhcchHHHHHHHHHHHHHHhhcCCCceeccHHHHHHHHHhccccccccCCchhHHHHHHHHHHHHH
Q 000911         1005 ALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVEL 1084 (1229)
Q Consensus      1005 aL~~yl~~~~~~~~~~~~~~l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~Ll~~g~f~~~~~~~~~~~~~l~~l~~~e~ 1084 (1229)
                      ++++|++  ++.+   ++.....+++++++++..+..++|+..|.++++..+|.+..|...+.+  +|...+++.|+.|.
T Consensus       953 ~l~e~~R--~~~~---dp~t~~~~~stl~~~~~~~l~~eri~~~~l~~l~~~f~s~~~~~~~~~--~F~~~~~~~~~~~~ 1025 (1133)
T KOG1943|consen  953 ALLEYVR--DENS---DPKTIGSRDSTLLQLIEEALLNERIMERFLRPLMIVFNSLIFLYGEFA--TFANLMLDSCKTER 1025 (1133)
T ss_pred             HHHHHHH--Hhhc---CcccccchHHHHHHHHHHHHHHHHhcCccceeHHHHhcchhhhccCcc--cHHHHHHHHHHHHH
Confidence            9999998  4444   778888899999999999999999999999999999999677665666  88889999999999


Q ss_pred             HccCChHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHhcCCCcchhhHHHHHhhhhhcC
Q 000911         1085 KATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETC 1164 (1229)
Q Consensus      1085 ~~sk~v~kL~~~i~v~~~l~~~~~~~~~~a~~~L~~lL~H~~PkVR~~~Ae~lY~~Ll~~~d~~~~e~~d~~~~~L~~td 1164 (1229)
                      ++++++.|..++|.++|++++++..++++|+++++.+|+|++|+|||++|+++|++++.+++. + |++|++.++|++||
T Consensus      1026 ~~s~~~~~~~~~Ia~lc~~l~~~~~~~~~aLs~ll~~l~~~~~~vRkaAA~qly~al~~~~~~-~-~~mdeVle~Ls~t~ 1103 (1133)
T KOG1943|consen 1026 VSSKKIVKPLSAIAILCGLLQLEKLLRRKALSNLLVFLLNQGPKVRKAAAEQLYEALLRVSLV-G-ELMDEVLEKLSTTD 1103 (1133)
T ss_pred             HHHhhhcchHHHHHHHHHHHcCchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhh-h-hhHHHHHHHHHhhc
Confidence            999999999999999999999998899999999999999999999999999999999998866 4 88999999999999


Q ss_pred             CCCchhHhHHHHHHHHHHhCCCCCcccc
Q 000911         1165 WEGDMNVVKHQRLELYNLAGVGVGVLNN 1192 (1229)
Q Consensus      1165 W~~~~~~~r~~r~~l~~l~gv~~p~~~~ 1192 (1229)
                      |+.++.+++++||+||+++|++.|.+++
T Consensus      1104 w~~~~~~v~~qr~~L~~l~~~~~~~~~~ 1131 (1133)
T KOG1943|consen 1104 WQAPVGQVATQRNELCNLLGIDIPLLIQ 1131 (1133)
T ss_pred             ccchHHHHHHHHHHHHHHhcCCchhccC
Confidence            9999999999999999999999995544

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]	Back alignment and domain information

>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1229
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-10
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	5e-09
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-07
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	8e-05
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	6e-07
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	2e-05
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	7e-05
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	3e-04
1qgr_A		876	Protein (importin beta subunit); transport recepto	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 84.9 bits (209), Expect = 1e-16
 Identities = 108/740 (14%), Positives = 219/740 (29%), Gaps = 259/740 (35%)

Query: 2   EEVIFSQEED---ELDCKEIVLQKYFLQEWKIV--KSLLDEIVSYGRVPDTSSVHKIRSI 56
           ++++   E+      DCK++          K +  K  +D I+      D   V     +
Sbjct: 19  KDILSVFEDAFVDNFDCKDV------QDMPKSILSKEEIDHII---MSKDA--VSGTLRL 67

Query: 57  MDKYQEQG-QLVEPYLENIVSP----LMSIIRSKTIELGADSDEILKIIKPICIIIYTLV 111
                 +  ++V+ ++E ++      LMS I+++  +    +   ++    +        
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-------- 119

Query: 112 TVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILL------ 165
               Y     F  + VS L+  + L +       +  LR         K V++       
Sbjct: 120 ----YNDNQVFAKYNVSRLQPYLKLRQA------LLELRPA-------KNVLIDGVLGSG 162

Query: 166 --WLSILVLVPFDISSVDTSIANNE----NLGQ-NEPAPLVMRILGFC----KDYLSNAG 214
             W+++ V + + +        + +    NL   N P  ++  +         ++ S + 
Sbjct: 163 KTWVALDVCLSYKV----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 215 PMRTI------AGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTD-DVMNHF----RLL- 262
               I          L +LL                  VL +V +    N F    ++L 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLL--------VLLNVQNAKAWNAFNLSCKILL 270

Query: 263 -----GVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRL 317
                 V + L+A   A    + LD   +                  LL KYL       
Sbjct: 271 TTRFKQVTDFLSA---ATTTHISLDHHSMTLTPDEVK---------SLLLKYL-----DC 313

Query: 318 GLTCLPR--CTSAWRYVIRTSSLGENMSSRAA----FREI--DQCDHSV---VDSLKSEQ 366
               LPR   T+  R +   S + E++    A    ++ +  D+    +   ++ L+  +
Sbjct: 314 RPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 367 NRNC-------PEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL 419
            R         P      +P     ++ ++            W                 
Sbjct: 371 YRKMFDRLSVFPPS--AHIP---TILLSLI------------WFDVI------------- 400

Query: 420 SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRG 479
             +V   V +L          H   L    + ++      S+P        +++ +++  
Sbjct: 401 KSDVMVVVNKL----------HKYSL----VEKQPKESTISIP--------SIYLELKV- 437

Query: 480 SHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQ 539
                  + +              H   R+I++           +D              
Sbjct: 438 ------KLEN----------EYALH---RSIVDHYNIP----KTFD-------------- 460

Query: 540 ENVGRQGNYPHGIDIVNTADYFSLSSRVYSYL--HVAVFIAQYEGY-LYP--FVD-ELLY 593
                       +       YF      YS++  H+   I   E   L+   F+D   L 
Sbjct: 461 ---------SDDLIPPYLDQYF------YSHIGHHLKN-IEHPERMTLFRMVFLDFRFLE 504

Query: 594 NKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKY-DYALPADK--QKIVAGI---VPG 647
            KI H  T +  S  +             +  L  Y  Y    D   +++V  I   +P 
Sbjct: 505 QKIRHDSTAWNASGSIL----------NTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554

Query: 648 IEKARLYRGKGGEIMRSAVS 667
           IE   L   K  +++R A+ 
Sbjct: 555 IE-ENLICSKYTDLLRIALM 573

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1229
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-08
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-07
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-07
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-04
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-07
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	6e-06
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-04
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-04

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 80/696 (11%), Positives = 172/696 (24%), Gaps = 60/696 (8%)

Query: 379  PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLE-LFSPGEGD 437
             D   ++++++L  L D +  V+  A K +G + S +     E +  ++   + S  E  
Sbjct: 40   DDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQL 99

Query: 438  GSWHGGCLA-----LAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAA 492
                   L      L   +    L  +   K+   +  A+    ++   SV     D  A
Sbjct: 100  RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA---KQEDVSVQLEALDIMA 156

Query: 493  YVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGI 552
             +    G       + N    I   LL        +  R+    A   ++         +
Sbjct: 157  DMLSRQGGL-----LVNFHPSILTCLLP-QLTSPRLAVRKRTIIALG-HLVMSCGNIVFV 209

Query: 553  DIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTR 612
            D++         +   S     +                   KI   +  F    D   R
Sbjct: 210  DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 269

Query: 613  HGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIEC 672
                 A    V          P +    V+ I+    K   Y         +      + 
Sbjct: 270  EYCIQAFESFVR-------RCPKEVYPHVSTIINICLKYLTY-------DPNYNYDDEDE 315

Query: 673  ISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISL 732
               +  +          D    +    + +++ AA K L   V T            +S 
Sbjct: 316  DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE-FYKTVSP 374

Query: 733  KYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVN 792
              + +  +    ++     A   L   L         L         E P         N
Sbjct: 375  ALISRFKEREENVKADVFHAYLSL---LKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN 431

Query: 793  AVRGLVSVCETLTQSQENSLIHSGEDEISLFHL----IKNEVMTSLFKALDDYSVDNRGD 848
             V+ L    +  +        +   + +++           ++  +  +L+D S  +   
Sbjct: 432  IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLK 491

Query: 849  VGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFD-ANLATNLV 907
            + +      +               +  P               A         +   L 
Sbjct: 492  IDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD 551

Query: 908  AGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPH---------REKLEEIVPNEADL 958
                  A   +  L     K L+    ++ +                + L   +PN   +
Sbjct: 552  QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQI 611

Query: 959  NWGVPAFSYPRFVHL------------LRFSCYSRVLLSGLVISIGGLQESLRKASISAL 1006
                      R   +            +         +  L   +   Q +L+  ++SAL
Sbjct: 612  FLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSAL 671

Query: 1007 LEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRC 1042
               ++        A           ++     +   
Sbjct: 672  DILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQ 707

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1229
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.94
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.77
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.74
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.63
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.61
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.44
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.43
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.33
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.93
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.46
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.02
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.0
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	96.67
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.31
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	94.6
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	94.0
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	93.47
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	92.98
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	88.87
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	88.43
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	87.49

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.8e-17  Score=127.56  Aligned_cols=144  Identities=17%  Similarity=0.227  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC-CCCC
Q ss_conf             789999999982258999606887433364667211823577799999960499999972235998999999539-9999
Q 000911          380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRG-LLLP  458 (1229)
Q Consensus       380 e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rLp~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrg-lllp  458 (1229)
                      ...+.++..|+..+.+.+..||..|.++++.+...++.+...+++..+++.+....+....++++.+++.+++.. ..+.
T Consensus       168 ~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~  247 (1207)
T d1u6gc_         168 NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG  247 (1207)
T ss_dssp             TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             77999999999880899989999999999999987799879999999999870599889999999999999987615467


Q ss_pred             CCCCCHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             97000699997740575202545689621001458998741036810038999999998988872477723565
Q 000911          459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRR  532 (1229)
Q Consensus       459 ~~L~~vv~~i~~aL~fd~rrg~~SvGs~VRDAACyv~WAlARay~~~~l~~~~~~La~~Lv~~alFDrevniRR  532 (1229)
                      ..+++++|.+.+++.-+        ...+|.++...+++|++.+ |.++.|+...+...++....+|++.+.+-
T Consensus       248 ~~l~~i~~~l~~~l~~~--------~~~~r~~al~~l~~l~~~~-~~~~~~~~~~ii~~~l~~l~~dp~~~~~~  312 (1207)
T d1u6gc_         248 EYLEKIIPLVVKFCNVD--------DDELREYCIQAFESFVRRC-PKEVYPHVSTIINICLKYLTYDPNYNYDD  312 (1207)
T ss_dssp             TSCTTHHHHHHHHHSSC--------CTTTHHHHHHHHHHHHHCT-TCCCHHHHHHHHHHHTTCCCCC-------
T ss_pred             HHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             77999999999882586--------1777899999999999867-46544559999999999874073000346

PyMOL of d1u6gc_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure