Citrus Sinensis ID: 000924

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220--
Protein Sequence
MTMTAEVEVHGGGELSSQNDLPNGNAIADSSCVFVEVSGNDVGSGGTDLNSTNSVELNGKLVVEESNQSTINNEENEIESEKQESLVLVSESCADQENQLLNLSAKEAELGDQKFESGGAESGTVVVSDSVDGDGAVSCKNYSSENAASLHTDLPAETACENGAVDMIHEIQVADCPEELGVEIDQNTDEASRPVAVAVAGVDLQLGMQIVRGSVTVESERGLDAGHCQYGVSETVVDDLVDPSQETAELDKPSGVAESFPFQIDPENLPVESLKTDPDVALNVSDTTAKPDVDFRDSVVTESSPSGEVDDMERDNEVGKLNVGSGKSSDSHPVDDAHVNEVGNGPVRDDLVSVFHNSDAKSETETGFDSVDAEEKVSILASDDQRTEPEVLQGGIDGVDERSISVDNAAVESCTSESVYEESTADVKAECEIENAYVLSFRDVPGNEALVPESEVVSGSVSSIPEDVNVENVGIQHAGGEKDDHRSKELEENMETEFTGEESDDLVCKEVLENARIQFTGGGSDDQAHKEVKEKGGIQFTSGESDDKTFQEVEGIQSTDGGTDDKTCKKVVVNGGIKFTSEEQNDKTCPEVKENRGIQLTGGEDGDRTFQDVEGIERSDRCETQTSTPEGSTVDASESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRGKRRVPSWMWVLIIALVVFALFLLGNSSFSFKFGFGGSAF
Secondary Structure (PSIPRED)
ccccEEEEEEcccccccccccccccccccccEEEEEEcccccccccccccccccEEEcccEEEEccccccccccHHHHHHHHHcccEEEcHHHHHHHHHccccccHHcccccccccccccccccEEEccccccccccEEEEcccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHcccccccccccccHHHHHHHccccccHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccHHHHHHHHccccccccHHHHcccccHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccHHHHcccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccHHHHcccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccccccccccccEEEcccEEEEEEcccccccccccccccccEEEEcEEEEcccccccccccHccccHHccccEEEEEccHHHHHccccccccEEEEcccccccccccccccEEEEccccccccEEEEEccccccEEEccccccccccccccccEEEEEEEEEcccccccccccccHHHccccHHHHcccEEEEccEEccccEEEEccccccccccccccccccEcccccccccccEccccccEEEEEEEEEcccccccccccccccccEEcccccccccEEEcccccccccccccccHHccccccccEEEEcccccccccccccccccccccccccEEEEEEcccHHHHcccccccccccHHccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEcccccccccHHHHHcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHcHccccccHHHHHHHHHccccEEEcccccccEEccccccEEEccccccccccccEEccccEEEcEcccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHccccHHccccccHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHcccccccccccccccccccccccccEcccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccc
Coil and Loop (DISEMBL)
MTMTAEVEvhgggelssqndlpngnaiadsSCVFVEVsgndvgsggtdlnstnsveLNGKLVVEESnqstinneeneiesekQESLVLVSESCADQENQLLNLSAKeaelgdqkfesggaesgtvvvsdsvdgdgavscknyssenaaslhtdlpaetacengavdmIHEIqvadcpeelgveidqntdeasrPVAVAVAGVDLQLGMQIVRGSVTvesergldaghcqygvsetvvddlvdpsqetaeldkpsgvaesfpfqidpenlpveslktdpdvalnvsdttakpdvdfrdsvvtesspsgevddmerdnevgklnvgsgkssdshpvddahvnevgngpvrddLVSVFhnsdaksetetgfdsvdaeEKVSIlasddqrtepevlqggidgvdersisVDNAAvesctsesvyeestadVKAECEIENAYVLsfrdvpgnealvpesevvsgsvssipedvnvenvgiqhaggekddhRSKELEEnmeteftgeesddLVCKEVLENARIqftgggsddqAHKEVKekggiqftsgesddktFQEVEgiqstdggtddktcKKVVVNGGikftseeqndktcpevkenrgiqltggedgdrtfqdvegiersdrcetqtstpegstvdasesrnigvevvkqpfyflvkvpryddenLREQIKAAQSKVdektrsrdaIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAisvddidgsirnmehriahetlplKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLktldgrslgpdeeaplirpflndrvakNISLTQISAlerekteqvvpiksekvddkpfpevreqgdqiakfkkpekpsraenvsttvsgrddEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDtaitneeeytqssetplevprtpelrdkpstatkkpkkasqftkqakaksiplplrnrgkrrvpsWMWVLIIALVVFALFLlgnssfsfkfgfggsaf
Flexible Loop (DISEMBL)
mtmtaevevhgggelssqndlPNGNAIADSSCVFVEVSGNDVgsggtdlnstnsvELNGKLVVeesnqstinneeneieseKQESLVLVSESCADQENQLLNLSAKEAELGDQKFESGGAESGTVVVSDSVDGDGAVSCKNYSSENAASLHTDLPAETACENGAVDMIHEIQVADCPEELGVEIDQNTDEASRPVAVAVAGVDLQLGMQIVRGSVTVESERGLDAGHCQYGVSETVVDDLVDPSQETaeldkpsgvaESFPFQIDPENLPVESLKTDPDVALNVSdttakpdvdfrdsvvtesspsgevddmerdnEVGKLNVGsgkssdshpvDDAHVNEVGNGPVRDDLVSVFHNSDaksetetgfdsvdaEEKVSilasddqrtepevlqggidgvdersISVDNAAvesctsesvyeestadvKAECEIENAYVLSFRDVPGNEALVPESEVVsgsvssipedvnvenvgiqhaggekddhrsKELEENmeteftgeesdDLVCKEVLENARIQftgggsddqahKEVKEKGgiqftsgesddktfQEVEGiqstdggtddktckKVVVNGgikftseeqndktcpevkenrgiqltggedgdrtfQDVEGiersdrcetqtstpegstvdasesrnigvevvkqpfyfLVKVPRYDDENLREQIKAaqskvdektrsrdairddIQTIRASYKEYAEKLEAAISdersareslkskrqeIDSVQSRINMMKNAISVDDIDGSIRNMEHRIahetlplkeekQIIREIKQLKQRREQIsssigehdevqlAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEyvnsnirstlrrlktldgrslgpdeeaplirpflndrvAKNISLtqisalerekteqvvpiksekvddkpfpevreqgdqiakfkkpekpsraenvsttvsgrddeieeakeevpkltkeeEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAqkeaeqkekerekrarkkekrkaaaaedtaitneeeytqssetplevprtpelrdkpstatkkpkkasqftkqakaksiplplrnrgkrRVPSWMWVLIIALVVFALFLLGNSSFSFKFGFGGSAF
Low Complexity Region (SEG)
MTMTAEVEVHGGGELSSQNDLPNGNAIADSSCVFVEVSGNDVGSGGTDLNSTNSVELNGKLVVeesnqstinneeneiesekqesLVLVSESCADQENQLLNLSAKEAELGDQKFESGGAEsgtvvvsdsvdgdgavsCKNYSSENAASLHTDLPAETACENGAVDMIHEIQVADCPEELGVEIDQNTDEASRPVAVAVAGVDLQLGMQIVRGSVTVESERGLDAGHCQYGVSETVVDDLVDPSQETAELDKPSGVAESFPFQIDPENLPVESLKTDPDVALNVSDTTAKPDVDFRDSVVTESSPSGEVDDMERDNEVGKLNVGSGKSSDSHPVDDAHVNEVGNGPVRDDLVSVFHNSDAKSETETGFDSVDAEEKVSILASDDQRTEPEVLQGGIDGVDERSISVDNAAVESCTSESVYEESTADVKAECEIENAYVLSFRDVPGNEALvpesevvsgsvssIPEDVNVENVGIQHAGGEKDDHRSKeleenmeteftgeeSDDLVCKEVLENARIQFTGGGSDDQAHKEVKEKGGIQFTSGESDDKTFQEVEGIQSTDGGTDDKTCKKVVVNGGIKFTSEEQNDKTCPEVKENRGIQLTGGEDGDRTFQDVEGIERSDRCETQTSTPEGSTVDASESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAkeevpkltkeeeemarkaeekrkeeataklreQrrleekakaqealerkkrIAEKAQTraalraqkeaeqkekerekrarkkekrkaaaaeDTAITNEEEYTQSSETPLEVPRTPELRDkpstatkkpkkasQFTKQAKAKSIPLPLRNRGKRRVPSWMWVLIIALVVfalfllgnssfsfkfgfggsaf
Disordered region (IsUnstruct)
******************************SCVFVEV***********************************************************************************************************************ETACENGAVDMIHEIQVADCPEELGVEIDQNT**ASRPVAVAVAGVDLQLGMQIVRGSVTVESERGLDAGHCQYGVSETVVDDL****************************************************************************************************************************************************************************************ADVKAECEIENAYVLSFRDVPG************************************************************VCKEVLENARI**************************************************CKKVVVNGGIK***************************************************************IGVEVVKQPFYFLVKVPRYD**************************************************************************************************************************************************************************************LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK***************EALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRL***************LIRPFLNDRVAKNISLTQ*************************************************************************************************************************************************************************************************************************RVPSWMWVLIIALVVFALFLLGNSSFSFKFGF*****
Disordered Region (DISOPRED)
*****E******G*******LPNGNAIADSSCVFVEVSG*****************LN******************************************************************************VSCKNY********************GAVDMIHEIQ*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************WMWVLIIALVVFALFLLGNSSFSFKFGFGGS**
Disordered Region (DISEMBL)
*************ELSSQNDLPNGNAIADSSCVFVEVSGNDVGSGGTDLNSTNSVELNGKLVVEES********************VLVSESCADQENQLLNLSAKEAELGDQKFESGGAESGTVVVSDSVDGDGAVSCKNYSSENAASLHTDLPAETACENGAVDMIHEIQVADCPEELGVEIDQNTDEASRPVAVAVAGVDLQLGMQIVRGSVTVESERGLDAGHCQYGVSETVVDDLVDPSQETAELDKPSGVAESFPFQIDPENLPVESLKTDPDVALNVSDTTAKPDVDFRD**************MERDNEVGKLN***********VDDAHVNEVGNGPVRDDLVSVFHNS************VDAEEKVSILASDDQRTEPEVLQGGIDGVDERSISVDNAA****************VKAECEIENAYVLSFRDVPGNEALV**********SSIPEDVNVENVGIQ***************************DDLVCKEVLENARIQFTGGGSDDQAHKEVKEKGGIQFTSGESDDKTFQEVEGIQSTDGGTDDKTCKKVVVNGGIKFTSEEQNDKTCPEVKENRGIQLTGGEDGDRTFQDVEGI**********************SRNIGVEVVKQPFYFLVKVPRYDDENLREQIKA***********RDAIRDDIQTIRASYKEYAEKLEAAIS****************DSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKF******************************************************KLREQRRLEEKAKAQEALERKKRIAE*************************************************************************************AKSIPLPLRNRGKRRVPSWMWVLIIALVVFALFLLGNSSFSFKFGFGGSAF
Disordered Region (DISPRO)
*TMTAEVEVHGGGELSSQNDLPNGNAIADSSCVFVEVSGNDVGSGGTDLNSTNSVELNGKLVVEE******************ESLVLVSESCADQEN*L***SA**AEL***************VVSDSVDGDGAVSCKNYSSENAASLHTDLPAETACENGAVDMIHEIQVADCPEELGVEIDQNTDEASRPVAVAVAGVDLQLGMQIVRGSVTVESER***************VDDLVDPSQETAELDKPSGVAESFPFQIDPENLPVESLKTDPDVALNVSDTTAKPDVDFRDSVV*********************************************PVRDDLVSVFHNS*******************************************************************DVKAECEIENAYVLSFRDV*****************************************************************************************************DDKTFQEVEGIQSTDGG******KKVVVNGGIKFTSE*********************************************************RNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRP*********************************************************************************************RK***********KLR**R**EEKAKAQE************************************************************************************************KSIPLPLRNRGKRRVPSWMWVLIIALVVFALFLLGNSSFSFKFGFGGS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTMTAEVEVHGGGELSSQNDLPNGNAIADSSCVFVEVSGNDVGSGGTDLNSTNSVELNGKLVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxSCADQENQLLNLSAKEAELGDQKFESGGAESGTVVVSDSVDGDGAVSCKNYSSENAASLHTDLPAETACENGAVDMIHEIQVADCPEELGVEIDQNTDEASRPVAVAVAGVDLQLGMQIVRGSVTVESERGLDAGHCQYGVSETVVDDLVDPSQETAELDKPSGVAESFPFQIDPENLPVESLKTDPDVALNVSDTTAKPDVDFRDSVVTESSPSGEVDDMERDNEVGKLNVGSGKSSDSHPVDDAHVNEVGNGPVRDDLVSVFHNSDAKSETETGFDSVDAEEKVSILASDDQRTEPEVLQGGIDGVDERSISVDNAAVESCTSESVYEESTADVKAECEIENAYVLSFRDVPGNEALVPESEVVSGSVSSIPEDVNVENVGIQHAGGEKDDHRSKELEENMETEFTGEESDDLVCKEVLENARIQFTGGGSDDQAHKEVKEKGGIQFTSGESDDKTFQEVEGIQSTDGGTDDKTCKKVVVNGGIKFTSEEQNDKTCPEVKENRGIQLTGGEDGDRTFQDVEGIERSDRCETQTSTPEGSTVDASESRNIGVEVVKQPFYFLVKVPRYDxxxxxxxxxxxxxxxxxxxxxRDAIRDDIQTIRASYKEYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxISVDDIDGSIRNMEHRIAHETLPLKExxxxxxxxxxxxxxxxxxxxxIGEHDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRGKRRVPSWMWVLIIALVVFALFLLGNSSFSFKFGFGGSAF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1222	2.2.26 [Sep-21-2011]
O23144	612	Proton pump-interactor 1	no	no	0.313	0.625	0.262	2e-24
B3H4K7	589	Proton pump-interactor 2	no	no	0.251	0.521	0.204	1e-06

>sp|O23144|PPI1_ARATH Proton pump-interactor 1 OS=Arabidopsis thaliana GN=PPI1 PE=1 SV=2

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 221/457 (48%), Gaps = 74/457 (16%)

Query: 652  YFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE 711
            ++LVK   Y D  ++ ++  A  ++++  ++R  + D ++  RA   E  + L+   S+ 
Sbjct: 79   FYLVKYRSYADPKIKAKLDLADKELEKLNKARTGVLDKLRAKRAERSELFDLLDPLKSER 138

Query: 712  RSARESLKSKRQEIDSVQSRINMMKN---------AI--SVDDIDGSIRNMEHRIAHETL 760
            +        KR+E++ +Q  +  +++         AI  S ++++  I + ++RI HE++
Sbjct: 139  KGFNTMFDEKRKEMEPLQQALGKLRSNDGGSARGPAICSSEEELNSMIYSYQYRIQHESI 198

Query: 761  PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENV 820
            PL EEKQI++EI+ L+  R+++ ++     +++ +  QKD I+ ++K +    D +++  
Sbjct: 199  PLTEEKQILKEIRLLEGTRDKVIANAAMRAKIKESMGQKDDIQGQVKLMGAGLDGVKKE- 257

Query: 821  IKAEAATQAVKKLHREESEKLKR-------LLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873
                   QA+     E SEKLK        L  + K   E R +AY +   L++Q  + N
Sbjct: 258  ------RQAISARINELSEKLKATKDEITVLENELKTVSEKRDKAYSNIHDLRRQRDETN 311

Query: 874  QHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLR 933
              +++ +    +A DLA++ +   L+ L   +VE+ + LW +   FR++Y    ++S   
Sbjct: 312  SEYYQNRTVLNKARDLAAQKNISELEALANAEVEKFISLWCSKKNFREDYEKRILQSLDS 371

Query: 934  RLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPF 993
            R  + DGR   PDE+ PLI P          + ++ +  E E    VVP    K   KP 
Sbjct: 372  RQLSRDGRMRNPDEK-PLIAP--------EAAPSKATPSETE----VVP----KAKAKPQ 414

Query: 994  PEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEA----------KEEVPKLTKEE 1043
            P+              E+P  A     TV+   ++ ++A           +EV  L K +
Sbjct: 415  PK--------------EEPVSAPKPDATVAQNTEKAKDAVKVKNVADDDDDEVYGLGKPQ 460

Query: 1044 EEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALER 1080
            +      EEK  + ATAK  E R+ EE AKA++A+ER
Sbjct: 461  K------EEKPVDAATAK--EMRKQEEIAKAKQAMER 489

Promotes AHA1 plasma membrane ATPase activity by binding to a site different from the 14-3-3 binding site.
Arabidopsis thaliana (taxid: 3702)

>sp|B3H4K7|PPI2_ARATH Proton pump-interactor 2 OS=Arabidopsis thaliana GN=PPI2 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 149/343 (43%), Gaps = 36/343 (10%)

Query: 622 CETQTSTPEGSTVDASESRNIGVE----VVKQPF-YFLVKVPRYDDENLREQIKAAQSKV 676
           C+  T T E  TV + +S   G        ++PF ++ VK P YDD  ++ +I  A  ++
Sbjct: 34  CDVSTVTTEDGTVFSGDSSPGGATEEDFPEEKPFSFYFVKQPAYDDPEIKAKIDEAGHEI 93

Query: 677 DEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736
           +   + R  + +  ++ +A       ++++ +S     R  ++ K+ E D++   +  ++
Sbjct: 94  NRYNKDRIVVSNAQESEKAEILSLFGQMKSLVSKSEGYRVVIEEKKMEFDALHESLRNLR 153

Query: 737 NA------ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHD 790
            +       S +++D  I    ++I H ++  +EE  +++E ++               D
Sbjct: 154 CSTSDQLCFSKEELDHLIYIAHYQIEHGSIGFEEEDWVLKETEKA--------------D 199

Query: 791 EVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKA 850
            + L+ D   + E  +  ++  A  L E   + +A T  +  L    S+K+ +     + 
Sbjct: 200 GIVLSEDSLAEKEASINRVKSMAVELNEVKKELDAITWKINHL----SDKVGKSQNNLRV 255

Query: 851 AD-------EIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCV 903
            D       E R  +Y+  + L+ Q       F++     ++A +LA+ G+   L+    
Sbjct: 256 LDVKKAHILEERDRSYERIKMLRIQRDKGKAAFYQSLPVMRKARELAASGNVRDLEVFAS 315

Query: 904 NQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPD 946
           ++ +R +  WN++  FR +YV     S   R    DGR   P+
Sbjct: 316 SEADRFMTQWNDDKAFRDDYVKRISPSLCERQLNQDGRIKDPE 358

May regulate plasma membrane ATPase activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1222
297745622	1477	unnamed protein product [Vitis vinifera]	0.506	0.419	0.608	0.0
449455738	1463	PREDICTED: uncharacterized protein LOC10	0.493	0.412	0.546	1e-168
255539360	1553	conserved hypothetical protein [Ricinus	0.502	0.395	0.552	1e-167
449528207	909	PREDICTED: uncharacterized LOC101219495	0.456	0.613	0.540	1e-145
356577005	1501	PREDICTED: uncharacterized protein LOC10	0.472	0.384	0.532	1e-145
356523390	1296	PREDICTED: uncharacterized protein LOC10	0.472	0.445	0.534	1e-138
297845076	1186	hypothetical protein ARALYDRAFT_472337 [	0.481	0.495	0.508	1e-131
357438817	1290	hypothetical protein MTR_1g035040 [Medic	0.475	0.450	0.486	1e-130
186478714	1364	uncharacterized protein [Arabidopsis tha	0.471	0.422	0.510	1e-130
224088206	485	predicted protein [Populus trichocarpa]	0.372	0.938	0.549	1e-123

>gi|297745622|emb|CBI40787.3| unnamed protein product [Vitis vinifera]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/636 (60%), Positives = 476/636 (74%), Gaps = 17/636 (2%)

Query: 595  NRGIQLTGGEDGDR-TFQDVEGIERSDRCETQTSTPEGSTVDASESRNIGVEVVKQPFYF 653
            N G Q+T  +  D+ T Q+     RS      +S+ E  + DA +S+N+ VEV K+PFYF
Sbjct: 851  NEGDQITSVDSDDKLTCQEA----RSVLGNGTSSSLEFLSTDALDSQNVPVEVGKRPFYF 906

Query: 654  LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERS 713
            L++VPRYDDE +RE+IK AQ +VDEKT+SRDAIR +IQ  RA  KEY+EK EAA+S+ER+
Sbjct: 907  LIRVPRYDDEKVREEIKLAQLQVDEKTKSRDAIRSEIQIKRAVCKEYSEKFEAALSEERA 966

Query: 714  ARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK 773
            AR+ LKSK QE+DSVQS IN +KNA+SV DIDG IR+MEH I HETLPLKEEKQ+IR+IK
Sbjct: 967  ARDLLKSKFQEMDSVQSVINRVKNAMSVKDIDGRIRHMEHAIEHETLPLKEEKQLIRDIK 1026

Query: 774  QLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKL 833
            QL+  REQ+SS++G  +EVQ A DQK Q+EE+ K LR+E DSL+  V KAE  T+A KK 
Sbjct: 1027 QLRNVREQLSSNMGRQEEVQQALDQKSQVEEQSKILREEVDSLKYKVQKAEVITKAAKKK 1086

Query: 834  HREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKG 893
            + +E+EKL  L  +FKAAD+IRQEAY H QSL+K+  +KN++F  YKD+ K AND AS G
Sbjct: 1087 YYDENEKLNELQARFKAADDIRQEAYTHLQSLRKKLSEKNKYFRMYKDNLKAANDYASAG 1146

Query: 894  DREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIR 953
            D+EALQ LCVN+VE ++ELWNNNDEFRKEYV  N RSTLRRL+TLDGRSLGPDEE P+I 
Sbjct: 1147 DKEALQRLCVNEVETIMELWNNNDEFRKEYVRCNTRSTLRRLRTLDGRSLGPDEEPPVIP 1206

Query: 954  PFLNDRVAKNI-------SLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKF 1006
             FLN+R+ +++       S+  +S +EREK  Q+VP  +E  DDK    V  Q ++ AK 
Sbjct: 1207 NFLNERIGRSLFAPTKDSSVLIVSTVEREK--QMVPATAESADDKSVVNVTNQKNRTAKN 1264

Query: 1007 KKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQR 1066
            K P K S    VS T+SGR DEIEE KEE  K TKEEEE+ARKAEE RKEE  AKL+EQR
Sbjct: 1265 KNPTK-SATGAVSATISGR-DEIEETKEE-HKQTKEEEELARKAEELRKEEEAAKLKEQR 1321

Query: 1067 RLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTA 1126
            RLEEKAKA+EALERKKR AEKAQ RA LRAQKEAEQK++EREK+ARKKE+RK+++AE T 
Sbjct: 1322 RLEEKAKAKEALERKKRNAEKAQARAELRAQKEAEQKQREREKKARKKERRKSSSAEGTE 1381

Query: 1127 ITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRGKRR 1186
              NE E   SSET  E     E+ +KP   TKKP K+SQFTKQ K+KSIP PLR+RGKRR
Sbjct: 1382 GCNEAESAPSSETSFETTLDSEIIEKPRAITKKPHKSSQFTKQPKSKSIPPPLRSRGKRR 1441

Query: 1187 VPSWMWVLIIALVVFALFLLGNSSFSFKFGFGGSAF 1222
            + SWMWV++IAL+V ALFLLGNS FS+  G     F
Sbjct: 1442 IQSWMWVVLIALLVLALFLLGNSGFSYGLGLRNFGF 1477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455738|ref|XP_004145608.1| PREDICTED: uncharacterized protein LOC101219495 [Cucumis sativus]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 334/611 (54%), Positives = 441/611 (72%), Gaps = 8/611 (1%)

Query: 605  DGDRTFQDVEGIERSDRCETQTSTPEGSTVDASESRNIGVEVVKQPFYFLVKVPRYDDEN 664
            DG  T +++E      + E  + +PEGS  DA   +N+G E   +PF FLVKVPR+DD+N
Sbjct: 859  DGKPTTEEIEVNREGCQNEPSSISPEGSG-DALTGQNVGAEAGTRPFNFLVKVPRFDDKN 917

Query: 665  LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724
            +REQIK AQ++VD KT+ RDAIR  IQT+RA++K  ++ LEAA+S+ R+AR+ LKSKR E
Sbjct: 918  IREQIKCAQAEVDWKTKDRDAIRVQIQTMRAAWKVLSDNLEAAVSEGRAARDLLKSKRLE 977

Query: 725  IDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS 784
            IDSVQS I  +KNA+SV+DIDG IRN+EH I HETLPLKEEKQ+IREIKQLKQ REQ+SS
Sbjct: 978  IDSVQSVITKVKNAMSVEDIDGRIRNIEHMIEHETLPLKEEKQLIREIKQLKQVREQLSS 1037

Query: 785  SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844
            ++G+ DE+Q A DQKD IEE++K LRKE D LR+NV+KAE+  +A KK + +ES KL  L
Sbjct: 1038 TMGKQDELQQALDQKDHIEERLKLLRKEMDLLRDNVLKAESVIKAAKKKYNDESIKLDEL 1097

Query: 845  LGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVN 904
              QFKAAD+IRQEAY + QS++KQ Y+KN++ WKY+DD K+A+++AS  D E +QH CVN
Sbjct: 1098 QSQFKAADKIRQEAYANLQSMRKQLYEKNKYCWKYRDDAKEASEIASSRDIEKVQHFCVN 1157

Query: 905  QVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNI 964
            QVER++ELWN N EFR+EY+ SN+RST+RRLKTLDGRSLGP+EE  ++   + +  A++ 
Sbjct: 1158 QVERMMELWNTNAEFREEYIKSNMRSTVRRLKTLDGRSLGPNEEPHVLNLIVKEGSARDN 1217

Query: 965  SLTQISALEREKTEQVVPIKS-EKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVS 1023
            SL+ +S  E    E   PI + +  D+KP  +V E+ +Q+ K KKP            +S
Sbjct: 1218 SLSTVSTTE----ESGKPISAYDASDNKPETKVAEEKNQMTK-KKPVTVVGLVTAPRNIS 1272

Query: 1024 GRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKR 1083
              ++  E  + E  K T+EEEE+A K EE RKEE   KL+EQR+LEE+AKA+EALERKKR
Sbjct: 1273 RENEVEEPPRPEEIKRTREEEELAAKVEELRKEEEAMKLKEQRKLEERAKAKEALERKKR 1332

Query: 1084 IAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEV 1143
             AEKAQ RA ++A+KEAE++EK REKRA+KKE++ AA  E     +E +    +ETP E 
Sbjct: 1333 NAEKAQARAVIKARKEAEEREKLREKRAKKKERKMAAETEAGNDWDERDSALVTETPSET 1392

Query: 1144 PR-TPELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRGKRRVPSWMWVLIIALVVFA 1202
             +   E   KP  A KKP+KA Q+TKQ+K KSIP PLRNRGKRR+  WMWVL+  +VVFA
Sbjct: 1393 QKEESENTGKPGMAAKKPQKALQYTKQSKTKSIPPPLRNRGKRRMQPWMWVLLSTVVVFA 1452

Query: 1203 LFLLGNSSFSF 1213
            LF +G     +
Sbjct: 1453 LFFVGQQRLLY 1463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539360|ref|XP_002510745.1| conserved hypothetical protein [Ricinus communis] gi|223551446|gb|EEF52932.1| conserved hypothetical protein [Ricinus communis]

 Score =  597 bits (1539), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 346/626 (55%), Positives = 452/626 (72%), Gaps = 12/626 (1%)

Query: 594  ENRGIQLTGGEDGDRTFQDVEGIERSDRCETQTSTPEGSTVDASESRNIGVEVVKQPFYF 653
            E+RG +    +  ++T Q++E  E  +R +  TS+PEGS  DAS+ +N  VEVVK+PFY+
Sbjct: 938  EDRGNEFVSIDSDEKTPQEMEVTEAVNREQASTSSPEGSAADASDGQNSVVEVVKRPFYY 997

Query: 654  LVKVPRYDD-ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDER 712
            ++++PRYDD ENL+EQIK AQ +VDEKTRSRDAIR ++Q+ RA+  +Y   + AAIS+E 
Sbjct: 998  MIRIPRYDDDENLKEQIKHAQDQVDEKTRSRDAIRAEMQSQRANCNKYGASVAAAISEET 1057

Query: 713  SARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI 772
            SAR+ LK+KR+EIDSV   IN  K+A  +  ID  I  MEH+I HET+PL+EEK  I EI
Sbjct: 1058 SARDLLKAKRKEIDSVLLVINKGKSASELKIIDEKIHGMEHKIQHETMPLREEKNYILEI 1117

Query: 773  KQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKK 832
            K+LKQ RE++  + G   +VQ A DQ+ Q EE++K LRKEAD LREN +KAEAAT+ V+K
Sbjct: 1118 KKLKQAREKLFFNFGSQGDVQEAIDQQVQFEERLKILRKEADLLRENALKAEAATKNVEK 1177

Query: 833  LHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASK 892
             ++EE  KL  L+G+F+AAD+IRQEA+ H QSL+K+ YDK+++F+KYK+D K A+DLASK
Sbjct: 1178 KYQEEKAKLGELIGRFRAADDIRQEAFAHLQSLRKRLYDKHKNFYKYKEDAKAASDLASK 1237

Query: 893  GDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLI 952
            GD+  LQ+ CVNQVERV+ELWNNNDEFRK+Y+  N+RST+RRL+TLDGRSLGPDEE P+I
Sbjct: 1238 GDQGELQYHCVNQVERVMELWNNNDEFRKDYIRCNLRSTVRRLRTLDGRSLGPDEEPPVI 1297

Query: 953  RPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKP 1012
              F+++R A+   +  IS L+ EK   + P ++E  DDK   +V+   +  AK KKP K 
Sbjct: 1298 PNFVSERFARRNVVPSISTLQEEKI--IAPTETENKDDKSIAKVK---NPTAKSKKPAKH 1352

Query: 1013 SRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKA 1072
            +   N   TVS R +  EE   E  KLTKEEEE+ARKAEE RKEE  A L+E++ LE K 
Sbjct: 1353 ALG-NSMATVSNRVEI-EEEGVEEHKLTKEEEELARKAEELRKEEEAATLKERQLLEAKT 1410

Query: 1073 KAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEE 1132
            KA EALERKKR A KAQ RA +RA+KEAEQKEKE+EKRARKKEKR+A  A +   +NE E
Sbjct: 1411 KANEALERKKRSANKAQARAEVRARKEAEQKEKEKEKRARKKEKRRALEAANG--SNEGE 1468

Query: 1133 YTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRGKRRVPSWMW 1192
               SSETP +  +  E  +KP    K+ +K   F KQ K K  P PLRNRGKRR+ +WMW
Sbjct: 1469 SAPSSETPTDT-KESETIEKPVALRKRSQKPLHFAKQTKPKIKPPPLRNRGKRRMQTWMW 1527

Query: 1193 VLIIALVVFALFLLGNSSFSF-KFGF 1217
            VL+   ++FALFL+GN SFS  +FGF
Sbjct: 1528 VLLTITIIFALFLIGNGSFSLQRFGF 1553

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528207|ref|XP_004171097.1| PREDICTED: uncharacterized LOC101219495 [Cucumis sativus]

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 306/566 (54%), Positives = 406/566 (71%), Gaps = 8/566 (1%)

Query: 605  DGDRTFQDVEGIERSDRCETQTSTPEGSTVDASESRNIGVEVVKQPFYFLVKVPRYDDEN 664
            DG  T +++E      + E  + +PEGS  DA   +N+G E   +PF FLVKVPR+DD+N
Sbjct: 335  DGKPTTEEIEVNREGCQNEPSSISPEGSG-DALTGQNVGAEAGTRPFNFLVKVPRFDDKN 393

Query: 665  LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724
            +REQIK AQ++VD KT+ RDAIR  IQT+RA++K  ++ LEAA+S+ R+AR+ LKSKR E
Sbjct: 394  IREQIKCAQAEVDWKTKDRDAIRVQIQTMRAAWKVLSDNLEAAVSEGRAARDLLKSKRLE 453

Query: 725  IDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS 784
            IDSVQS I  +KNA+SV+DIDG IRN+EH I HETLPLKEEKQ+IREIKQLKQ REQ+SS
Sbjct: 454  IDSVQSVITKVKNAMSVEDIDGRIRNIEHMIEHETLPLKEEKQLIREIKQLKQVREQLSS 513

Query: 785  SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL 844
            ++G+ DE+Q A DQKD IEE++K LRKE D LR+NV+KAE+  +A KK + +ES KL  L
Sbjct: 514  TMGKQDELQQALDQKDHIEERLKLLRKEMDLLRDNVLKAESVIKAAKKKYNDESIKLDEL 573

Query: 845  LGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVN 904
              QFKAAD+IRQEAY + QS++KQ Y+KN++ WKY+DD K+A+++AS  D E +QH CVN
Sbjct: 574  QSQFKAADKIRQEAYANLQSMRKQLYEKNKYCWKYRDDAKEASEIASSRDIEKVQHFCVN 633

Query: 905  QVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNI 964
            QVER++ELWN N EFR+EY+ SN+RST+RRLKTLDGRSLGP+EE  ++   + +  A++ 
Sbjct: 634  QVERMMELWNTNAEFREEYIKSNMRSTVRRLKTLDGRSLGPNEEPHVLNLIVKEGSARDN 693

Query: 965  SLTQISALEREKTEQVVPIKS-EKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVS 1023
            SL+ +S  E    E   PI + +  D+KP  +V E+ +Q+ K KKP            +S
Sbjct: 694  SLSTVSTTE----ESGKPISAYDASDNKPETKVAEEKNQMTK-KKPVTVVGLVTAPRNIS 748

Query: 1024 GRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKR 1083
              ++  E  + E  K T+EEEE+A K EE RKEE   KL+EQR+LEE+AKA+EALERKKR
Sbjct: 749  RENEVEEPPRPEEIKRTREEEELAAKVEELRKEEEAMKLKEQRKLEERAKAKEALERKKR 808

Query: 1084 IAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEV 1143
             AEKAQ RA ++A+KEAE++EK REKRA+KKE++ AA  E     +E +    +ETP E 
Sbjct: 809  NAEKAQARAVIKARKEAEEREKLREKRAKKKERKMAAETEAGNDWDERDSALVTETPSEA 868

Query: 1144 PR-TPELRDKPSTATKKPKKASQFTK 1168
             +   E   KP  A KKP+KA Q  K
Sbjct: 869  QKEESENTGKPGMAAKKPQKALQVHK 894

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577005|ref|XP_003556620.1| PREDICTED: uncharacterized protein LOC100798700 [Glycine max]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 318/597 (53%), Positives = 419/597 (70%), Gaps = 20/597 (3%)

Query: 635  DASESRNIGVEVVKQPFYFLVKVPRYDD-ENLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693
            DA + +N+G EVVK+PFY+L++VPRYDD EN++E+IK A  +V+EKT+ RDAIR + QTI
Sbjct: 911  DALDGQNVGTEVVKKPFYYLIRVPRYDDDENIKEKIKNALHQVEEKTKIRDAIRIESQTI 970

Query: 694  RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEH 753
            +AS K++ ++  AAI+  R+AR+ LKSKRQEIDSVQS +N + NAISV DID  IR+MEH
Sbjct: 971  KASCKDFDQEFRAAIAAHRAARDLLKSKRQEIDSVQSTMNRLNNAISVGDIDDKIRSMEH 1030

Query: 754  RIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKD-QIEEKMK---FL 809
             I HETLPL +EKQ+IREIKQLKQ RE++SS++ + D+ Q + D KD  IEE  K    L
Sbjct: 1031 MIQHETLPLNKEKQLIREIKQLKQNREELSSNMKKQDQSQQSVDNKDDNIEEHFKHLQLL 1090

Query: 810  RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869
            +KE + LR NV+K++  T+A KK + +E +KL  LL +F+AAD+ RQEAY    +LKKQ 
Sbjct: 1091 KKEMEVLRNNVLKSDTETKAAKKKYNDECDKLNELLARFRAADDSRQEAYAKLLALKKQL 1150

Query: 870  YDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIR 929
            ++K+++FW+Y+D   +A +LA+ G +E LQ  CV+QVER++ELWN ND FR++YV  N R
Sbjct: 1151 HEKSKNFWEYRDAANKAQELAAGGKKEELQCFCVDQVERIMELWNKNDGFRRDYVRCNTR 1210

Query: 930  STLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVD 989
            STLRRL+TLDGRSLGPDEE P+I   + +R +KNI +   S LE+EK  +  P +S  V 
Sbjct: 1211 STLRRLQTLDGRSLGPDEEPPVIPNVITERASKNIPMVLQSTLEQEK--KSTPTESVNVK 1268

Query: 990  DKPFPEV---REQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEM 1046
            D+P  +V   R +  Q  K KKP KP+  E          DE +E K+E P  TKEEEE+
Sbjct: 1269 DEPVSKVVVQRTETSQTTKAKKPTKPAPLEKHVARWGDESDE-DEVKKEEPVRTKEEEEL 1327

Query: 1047 ARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKE 1106
              KAE+ R EE  AKL+E+RRLEE  KA+EAL RKKR AEKAQ RAAL+AQKEAE KEKE
Sbjct: 1328 ILKAEKARMEEEEAKLKEKRRLEEIEKAKEALLRKKRNAEKAQQRAALKAQKEAELKEKE 1387

Query: 1107 REKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTP---ELRDKPSTATKKPKKA 1163
            REKRA+KKE+RKA     +A+T E    +S+  P  + R+    E  +K +  TKKP+K 
Sbjct: 1388 REKRAKKKERRKAG----SAVTAENTEQESAPIPETLTRSVEEFEQTEKTAEVTKKPQKT 1443

Query: 1164 SQFTKQAKAKSIPLPLRNRGKRRVPSWMWVLIIALVVFALFLLG-NSSFSFKF-GFG 1218
            SQFT+Q K KS+P  LRNRGKRR+  W+ VLI  +V  ALF +G N S      GFG
Sbjct: 1444 SQFTRQTKVKSVPAALRNRGKRRIQPWVCVLIALVVAVALFYVGHNCSLRSSLEGFG 1500

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523390|ref|XP_003530323.1| PREDICTED: uncharacterized protein LOC100820077 [Glycine max]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 319/597 (53%), Positives = 429/597 (71%), Gaps = 19/597 (3%)

Query: 635  DASESRNIGVEVVKQPFYFLVKVPRYDDE-NLREQIKAAQSKVDEKTRSRDAIRDDIQTI 693
            DA + +N+G EVV++PFY+L++VPRYDD+ N++E+I+ A  +V+EK++ RDAIR + QTI
Sbjct: 705  DALDGQNVGAEVVEKPFYYLIRVPRYDDDGNMKEKIRNALHQVEEKSKIRDAIRAESQTI 764

Query: 694  RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEH 753
            +AS K++ ++  AAI+  R+AR+ LKSKRQE+DSVQS +N + NAISV DIDG IR+MEH
Sbjct: 765  KASCKDFDQEFRAAIAAHRAARDLLKSKRQEMDSVQSTMNRLNNAISVGDIDGKIRSMEH 824

Query: 754  RIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKD-QIEEKMK---FL 809
             I HETLPL +EKQ+IREIKQLKQ RE++SS++   D+ Q + + KD  IEE  K    L
Sbjct: 825  MIEHETLPLNKEKQLIREIKQLKQNREELSSNMKRQDQSQQSLENKDDNIEEHFKHLQLL 884

Query: 810  RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA 869
            +KE + LR NV+K++A T+A KK + +E +KL  LL +F+AAD+ RQEAY    +LKKQ 
Sbjct: 885  KKEMEVLRNNVLKSDAETKAAKKKYNDECDKLNELLARFRAADDTRQEAYAKLLALKKQL 944

Query: 870  YDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIR 929
            ++K+++FW+Y+D   +A +LA+ G +E LQ  CV++VER++ELWN NDEFR++YV  N R
Sbjct: 945  HEKSKNFWEYRDAATKAQELAAGGKKEELQCFCVDEVERIMELWNKNDEFRRDYVRCNTR 1004

Query: 930  STLRRLKTLDGRSLGPDEEAPLIRP-FLNDRVAKNISLTQISALEREKTEQVVPIKSEKV 988
            STLRRL+TLDGRSLGPDEE PL+ P  + +R +KNI +   + +E+EK     P +S  V
Sbjct: 1005 STLRRLQTLDGRSLGPDEE-PLVMPNAITERASKNIPMVSNTTMEQEKKS---PRESVNV 1060

Query: 989  DDKPFPEV---REQGDQIAKFKKPEKPSRAEN--VSTTVSGRDDEIEEAKEEVPKLTKEE 1043
             D+P  +V   R +  Q  K KKP KP+  E           +DE ++  EE P  TKEE
Sbjct: 1061 KDEPDSKVVAQRTETSQTTKAKKPTKPAPLEKHVARWGDESDEDEDKDKNEEEPVRTKEE 1120

Query: 1044 EEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQK 1103
            EE+  KAE+ RKEE  AKL+E+RRLEE  KA+EAL+RKKR AEKAQ RAAL+AQKEAE K
Sbjct: 1121 EELILKAEKARKEEEEAKLKEKRRLEEIEKAKEALQRKKRNAEKAQQRAALKAQKEAELK 1180

Query: 1104 EKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKA 1163
            EKEREKRA+KKE+RK ++A  TA   E+E   ++ET   V  + +L +KP+  TKKP+K 
Sbjct: 1181 EKEREKRAKKKERRKTSSAV-TAENTEQESAHTTETLTSVEES-DLTEKPAEVTKKPQKP 1238

Query: 1164 SQFTKQAKAKSIPLPLRNRGKRRVPSWMWVLIIALVVFALFLLGNSSF--SFKFGFG 1218
            SQFT+Q K KS+P  LRNR KRR+  WMWVLI  +VV ALF +GNSS   S   GFG
Sbjct: 1239 SQFTRQTKVKSVPAALRNRAKRRIQPWMWVLIAVVVVVALFYVGNSSSLRSSLEGFG 1295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845076|ref|XP_002890419.1| hypothetical protein ARALYDRAFT_472337 [Arabidopsis lyrata subsp. lyrata] gi|297336261|gb|EFH66678.1| hypothetical protein ARALYDRAFT_472337 [Arabidopsis lyrata subsp. lyrata]

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 315/620 (50%), Positives = 431/620 (69%), Gaps = 32/620 (5%)

Query: 615  GIERSDRCETQTSTPEGSTVDASESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQS 674
             ++R+D  +   ST E S  DASE   +  E+ K+P YFL +VPRYD+E L EQ+K A+ 
Sbjct: 569  AVDRTD--DKVASTGEVSVPDASEVLTVAAEIEKRPVYFLPRVPRYDNEKLAEQLKHAEE 626

Query: 675  KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM 734
            +VD+KT+SRDA+R DIQ IRA  K+Y    +AA+++ERSAR+++ SKRQEI+++QS I+ 
Sbjct: 627  QVDQKTQSRDALRADIQKIRAICKDYDISYKAAMTEERSARKAMHSKRQEIEALQSMISR 686

Query: 735  MKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQL 794
            +K+A SVDDID  + NMEH + H TL L EEK  +REIKQLKQ REQISSS+G  DEV+ 
Sbjct: 687  VKSAASVDDIDSRVHNMEHMMQHTTLSLNEEKGFMREIKQLKQLREQISSSMGTKDEVKQ 746

Query: 795  AFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEI 854
            A D+K++ EE++K LRKE D+LR N+ KAE  T+A KK   EE E   +L  QF+AAD +
Sbjct: 747  ALDEKEKTEERLKVLRKELDALRNNLSKAETITKAAKKKCDEEWEAQSKLQEQFRAADAV 806

Query: 855  RQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWN 914
            R+EA+ H Q LKKQ  +KN++F+KY+D+++ A+++A K DR ALQ LC +QVE  + +WN
Sbjct: 807  REEAFVHLQDLKKQQREKNKYFFKYRDNSRAASEMALKKDRAALQSLCSDQVENFMNMWN 866

Query: 915  NNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIR--PFLN------DRVAKNISL 966
            N++EFRK YV SN RST RRL TLDGRSLGPDEE P I   P ++      DR  K+ ++
Sbjct: 867  NDEEFRKYYVKSNTRSTFRRLGTLDGRSLGPDEEPPRITYAPRMDKLRTSSDRAEKHEAV 926

Query: 967  TQISALEREKTEQVVPIKSEKVDD--KPFPEVREQGDQIAKFKKPEKPSR-AENVSTTVS 1023
              + A    + E+VV  +  KV++  K   +  EQ  Q  K KK  KP +   NV+  VS
Sbjct: 927  QPVPA----QQERVVKFEGSKVENNGKAVAKPTEQKSQTTKSKKAVKPDQPPPNVTELVS 982

Query: 1024 GRDDEIEEA----KEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALE 1079
            G+  EIE++    +EE PKLTKEEEE+ +K EEKRK++  AK++EQ RLEE AKA+EA+E
Sbjct: 983  GK-KEIEKSATPEEEEPPKLTKEEEELIKKEEEKRKQKEAAKMKEQHRLEEIAKAKEAME 1041

Query: 1080 RKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAA-AAEDTAITNEEEYTQSSE 1138
            RKK+  EKA+ R+ L+AQKEAE++EKERE++ RKKE+RK    +E+TAI N      +SE
Sbjct: 1042 RKKKREEKAKARSVLKAQKEAEEREKERERKLRKKERRKGIFTSEETAIENP---IPTSE 1098

Query: 1139 TPLEVPRTPELRDKPST-----ATKKPKKASQFTKQAKAKSIPLPLRNRG-KRRVPSWMW 1192
            T +E PR  E+  K +        K  K +SQF KQ K+KS+PLPLRNRG KR++  WMW
Sbjct: 1099 TVVETPREIEIPKKQTVEESQQIKKSHKTSSQFLKQNKSKSVPLPLRNRGSKRKLRQWMW 1158

Query: 1193 VLIIALVVFALFLLGNSSFS 1212
            + +I +++ ALFLLGN++ S
Sbjct: 1159 IGLIVVIILALFLLGNANLS 1178

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438817|ref|XP_003589685.1| hypothetical protein MTR_1g035040 [Medicago truncatula] gi|355478733|gb|AES59936.1| hypothetical protein MTR_1g035040 [Medicago truncatula]

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 295/606 (48%), Positives = 417/606 (68%), Gaps = 25/606 (4%)

Query: 631  GSTVDASESRNIGVEVVKQPFYFLVKVPRYDDE-NLREQIKAAQSKVDEKTRSRDAIRDD 689
             S  D  +++++G EVV++PFY+LV+VPRYDD+ N++EQI+ A  +V+E+T+ RD IR +
Sbjct: 691  ASATDVVDAQDMGSEVVRRPFYWLVRVPRYDDDDNVKEQIQHALQQVEEQTKIRDEIRTE 750

Query: 690  IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIR 749
             Q  +A  KEY ++  AA+ +ER+ARE LK+KRQE+DSVQS +N + NAISV DID  IR
Sbjct: 751  SQAKKALRKEYNQEFRAAVQEERAARELLKAKRQEMDSVQSTMNRLNNAISVGDIDSKIR 810

Query: 750  NMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEE---KM 806
            NMEH I HETLPLKEEKQ+IR+IK LKQ R ++S+ I + D+ Q + D K+ +EE   ++
Sbjct: 811  NMEHMIQHETLPLKEEKQLIRQIKLLKQNRGELSNIIAKQDQSQ-SLDDKESMEEQTKRL 869

Query: 807  KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866
            + LRKE D LR N++KAEA T+A KK + EE  ++  ++ ++ AAD+ RQEA+   Q+LK
Sbjct: 870  QLLRKELDVLRSNLLKAEAITKAAKKKYEEEGNQVDEVMARYNAADDTRQEAFVKLQTLK 929

Query: 867  KQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNS 926
            +Q ++K+++FW+Y+  + +  +L ++G +E ++ LC++Q ER+ EL   NDEFRK+Y   
Sbjct: 930  RQLHEKSKYFWEYRSASMRLQELGAQGKKEDVERLCIDQAERMHELL-KNDEFRKDYYRC 988

Query: 927  NIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSE 986
            N RST+RRL+TLDGR+L P EE P+I  F+ +R  KN S    S  E++K  + +P +  
Sbjct: 989  NTRSTVRRLQTLDGRTLNPGEEPPMIPAFI-ERAYKNDSSVSQSTPEQQK--KSIPTEPV 1045

Query: 987  KVD--DKPFPEVREQGDQIAKFKKPEKPSRA----ENVSTTVSGRDDEIEEAKE-EVPKL 1039
             V+  D+P  +   Q  +I++  KP+KP++     +  +  VS   DE +E KE   P  
Sbjct: 1046 TVNTKDEPASKAVVQKPEISQTSKPKKPAKLAPSEKKSADRVSRWGDESDEEKEPNEPVR 1105

Query: 1040 TKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKE 1099
            TKEE+E   KAE+ RK+E  AKL+E++RLEE  KA+EAL+RKKR AEKAQ RA  +AQKE
Sbjct: 1106 TKEEDEQILKAEQARKKEEEAKLKEKKRLEEIEKAKEALQRKKRNAEKAQQRALYKAQKE 1165

Query: 1100 AEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPELRD---KPSTA 1156
            AEQKEKEREKRA+KK KRK    ED A+ N E+   +S +   + RT E  D   KP   
Sbjct: 1166 AEQKEKEREKRAKKKGKRKTVTTED-AVENTEQDAAASPSSETLTRTLEESDQIEKPVEV 1224

Query: 1157 TKKPKKASQFTKQAKAKSIPLPLRNRGKRRVPSWM-WVLIIALVVFALFLLGNSS---FS 1212
            TK+  K SQFTKQ K K++P+ +RNRGKRR+  WM WVLI  LV+ ALF +GN+S    S
Sbjct: 1225 TKRAVKPSQFTKQNKVKALPMAIRNRGKRRIQPWMWWVLIAVLVIAALFYMGNNSSLRSS 1284

Query: 1213 FK-FGF 1217
            F+ FGF
Sbjct: 1285 FQSFGF 1290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478714|ref|NP_173521.2| uncharacterized protein [Arabidopsis thaliana] gi|332191928|gb|AEE30049.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 310/607 (51%), Positives = 415/607 (68%), Gaps = 31/607 (5%)

Query: 627  STPEGSTVDASESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAI 686
            ST E S +DASE   +  E+ K+PFYFL +VPRYDDE L EQ+K A+ +VD+KT++RDA+
Sbjct: 760  STGEVSVLDASEGLTVAAEIEKRPFYFLPRVPRYDDEKLAEQLKHAEEQVDQKTQNRDAL 819

Query: 687  RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG 746
            R DIQ IRA  K+Y    +A +++ERSAR+++ SKRQEI+++QS I+ +K+A SVDDID 
Sbjct: 820  RADIQKIRAICKDYDISYKAVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDS 879

Query: 747  SIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKM 806
             +RNMEH + H TL L EEK  +REIKQLKQ REQISSS+G  DEV+ A D+K++ EE++
Sbjct: 880  RVRNMEHTMQHTTLSLNEEKGFMREIKQLKQLREQISSSMGTKDEVKQALDEKEKTEERL 939

Query: 807  KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK 866
            K LRKE D+LR ++ KAE  T+A KK    E E   +L  QF+AAD +RQEA+ H Q LK
Sbjct: 940  KVLRKELDALRNDLSKAEEITKAAKKKCDGEWEAQSKLQEQFRAADAVRQEAFVHLQDLK 999

Query: 867  KQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNS 926
            KQ  +KN++F+KY+D+++ A+++A K DR ALQ LC +QVE  + +WNN+DEFRK YV S
Sbjct: 1000 KQQREKNKYFFKYRDNSRAASEMALKKDRAALQSLCSDQVENFMNMWNNDDEFRKYYVKS 1059

Query: 927  NIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSE 986
            N RST RRL TLDGRSLGPDEE P I        A      + S+   EK E  VP + E
Sbjct: 1060 NTRSTFRRLGTLDGRSLGPDEEPPRI------TYAPRTDKLRTSSDRAEKHE-AVPAQKE 1112

Query: 987  KV----------DDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEA---- 1032
            KV          + K   +  EQ  Q  K KK  KP +  ++ T +    +EIE++    
Sbjct: 1113 KVVKFEGSKVENNGKEVAKPTEQKSQTTKSKKAVKPDQPPSIVTELVSGKEEIEKSATPE 1172

Query: 1033 KEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRA 1092
            +EE PKLTKEEEE+ +K EEKRK++  AK++EQ RLEE AKA+EA+ERKK+  EKA+ RA
Sbjct: 1173 EEEPPKLTKEEEELIKKEEEKRKQKEAAKMKEQHRLEEIAKAKEAMERKKKREEKAKARA 1232

Query: 1093 ALRAQKEAEQKEKEREKRARKKEKRKAA-AAEDTAITNEEEYTQSSETPLEVPRTPELRD 1151
             L+AQKEAE++EKEREK+ RKKE+RK    +E+TA  N      ++ET +E PR  E   
Sbjct: 1233 VLKAQKEAEEREKEREKKLRKKERRKGIFTSEETATENP---IPTAETVVETPREIETPK 1289

Query: 1152 KPST-----ATKKPKKASQFTKQAKAKSIPLPLRNRG-KRRVPSWMWVLIIALVVFALFL 1205
            K +        K  K +SQF KQ K+KS+PLPLRNRG KR++  WMW+ +I +++ ALFL
Sbjct: 1290 KQTVEESQQMKKSHKPSSQFLKQNKSKSVPLPLRNRGSKRKLRQWMWIGLIVVIIIALFL 1349

Query: 1206 LGNSSFS 1212
            LGN++ S
Sbjct: 1350 LGNANLS 1356

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088206|ref|XP_002308370.1| predicted protein [Populus trichocarpa] gi|222854346|gb|EEE91893.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/491 (54%), Positives = 352/491 (71%), Gaps = 36/491 (7%)

Query: 751  MEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLR 810
            MEH+I HETLPLKEEKQ IR+IKQLKQ REQ SS++G  DEVQ A DQKDQ EE++K LR
Sbjct: 1    MEHKIQHETLPLKEEKQFIRDIKQLKQIREQFSSNMGSQDEVQQAMDQKDQSEERLKSLR 60

Query: 811  KEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY 870
            KEAD LR++++KAEA T+  KK + +E EK+ +LL Q +AA++IRQEA+ H QSL+KQ Y
Sbjct: 61   KEADVLRDSLLKAEAVTEDAKKKYNDEHEKINQLLFQHRAANDIRQEAFAHLQSLRKQLY 120

Query: 871  DKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRS 930
            +K++ F+KYKDD   A +LA KGD+E LQ  C NQVERV+ELWNNNDEFRKEY++SN+R+
Sbjct: 121  EKSKFFYKYKDDLTAATNLALKGDKEELQRHCANQVERVMELWNNNDEFRKEYMSSNMRN 180

Query: 931  TLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDD 990
            TLRRL+TLDGR+LGPDE+ P+I   ++ R  K+       ALE EK   V P++++++D+
Sbjct: 181  TLRRLRTLDGRALGPDEQPPIIPNVVSQRATKHNVAPSAPALEVEKP--VTPVETQRIDE 238

Query: 991  KPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEE---VP---------- 1037
            K   ++ ++ +Q  K K+  KP+  EN   TVSGR D+IEE+++E   +P          
Sbjct: 239  KSTAKLGDKKNQTVKTKRQAKPASLENGLPTVSGR-DQIEESRQEENKLPKEEESRQENK 297

Query: 1038 -----------KLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAE 1086
                       KLTKEE E+ARK EE RKE+  A L+EQRRLEEKAKA+EA+ERKKR AE
Sbjct: 298  LTKEEESRQENKLTKEEVELARKIEELRKEKEAAMLKEQRRLEEKAKAKEAMERKKRNAE 357

Query: 1087 KAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRT 1146
            KAQ RA+LRAQ+EAEQKEKE +++  KK++++ AAAEDT   +E E   SSETP E   +
Sbjct: 358  KAQARASLRAQREAEQKEKE-KEKKAKKKEKRKAAAEDTKDIDEVESAPSSETPTETNES 416

Query: 1147 PELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRGKRRVPSWMWVLIIALVVFALFLL 1206
             E  +KP T  K+P+      KQ KAKS+PLPLRN+GKR++ +WMW LI  L V ALF +
Sbjct: 417  -ERTEKPVTVAKRPQ------KQTKAKSMPLPLRNKGKRKMQTWMWALITLLAVVALFFM 469

Query: 1207 GNSSFSFKFGF 1217
            GNSSF F  G 
Sbjct: 470  GNSSF-FNLGL 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1222
TAIR|locus:2037365	1364	AT1G20970 "AT1G20970" [Arabido	0.361	0.324	0.480	5.1e-120
TAIR|locus:2124019	612	PPI1 "proton pump interactor 1	0.359	0.717	0.237	3.8e-27
UNIPROTKB|Q8IIG7	1070	PF11_0207 "Uncharacterized pro	0.260	0.297	0.194	6.7e-12
TAIR|locus:2087115	589	PPI2 "proton pump interactor 2	0.255	0.529	0.215	7.3e-12
TAIR|locus:504955937	734	AT2G22795 "AT2G22795" [Arabido	0.496	0.826	0.217	1.1e-11
DICTYBASE|DDB_G0271058	1528	vilC "villin-like protein C" [	0.347	0.278	0.207	8.4e-09
TAIR|locus:2098443	2081	AT3G28770 "AT3G28770" [Arabido	0.646	0.379	0.195	1.2e-08
ZFIN|ZDB-GENE-060503-506	1041	si:ch211-250g4.3 "si:ch211-250	0.290	0.341	0.229	1.8e-08
UNIPROTKB|Q9X0R4	1170	smc "Chromosome partition prot	0.279	0.292	0.225	1.9e-08
UNIPROTKB|P82094	1093	TMF1 "TATA element modulatory	0.249	0.279	0.236	1.9e-08

TAIR|locus:2037365 AT1G20970 "AT1G20970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1000 (357.1 bits), Expect = 5.1e-120, Sum P(3) = 5.1e-120
 Identities = 221/460 (48%), Positives = 309/460 (67%)

Query:   587 KTCPEVKENRGIQLT-----GGED--GDRTFQDVEG--IERSDRCETQTSTPEGSTVDAS 637
             KTC +  E++ +  T     G +D    +  ++ EG  ++R+D  +   ST E S +DAS
Sbjct:   713 KTCAQDLESKVVTSTDTIHTGAKDCVDSQPAENKEGNVVDRTD--DKVASTGEVSVLDAS 770

Query:   638 ESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY 697
             E   +  E+ K+PFYFL +VPRYDDE L EQ+K A+ +VD+KT++RDA+R DIQ IRA  
Sbjct:   771 EGLTVAAEIEKRPFYFLPRVPRYDDEKLAEQLKHAEEQVDQKTQNRDALRADIQKIRAIC 830

Query:   698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAH 757
             K+Y    +A +++ERSAR+++ SKRQEI+++QS I+ +K+A SVDDID  +RNMEH + H
Sbjct:   831 KDYDISYKAVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQH 890

Query:   758 ETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLR 817
              TL L EEK  +REIKQLKQ REQISSS+G  DEV+ A D+K++ EE++K LRKE D+LR
Sbjct:   891 TTLSLNEEKGFMREIKQLKQLREQISSSMGTKDEVKQALDEKEKTEERLKVLRKELDALR 950

Query:   818 ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877
              ++ KAE  T+A KK    E E   +L  QF+AAD +RQEA+ H Q LKKQ  +KN++F+
Sbjct:   951 NDLSKAEEITKAAKKKCDGEWEAQSKLQEQFRAADAVRQEAFVHLQDLKKQQREKNKYFF 1010

Query:   878 KYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKT 937
             KY+D+++ A+++A K DR ALQ LC +QVE  + +WNN+DEFRK YV SN RST RRL T
Sbjct:  1011 KYRDNSRAASEMALKKDRAALQSLCSDQVENFMNMWNNDDEFRKYYVKSNTRSTFRRLGT 1070

Query:   938 LDGRSLGPDEEAPLIR--PFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDD--KPF 993
             LDGRSLGPDEE P I   P  +     +    +  A+  +K E+VV  +  KV++  K  
Sbjct:  1071 LDGRSLGPDEEPPRITYAPRTDKLRTSSDRAEKHEAVPAQK-EKVVKFEGSKVENNGKEV 1129

Query:   994 PEVREQGDQIAKFKKPEKPSRAENVSTT-VSGRDDEIEEA 1032
              +  EQ  Q  K KK  KP +  ++ T  VSG++ EIE++
Sbjct:  1130 AKPTEQKSQTTKSKKAVKPDQPPSIVTELVSGKE-EIEKS 1168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2124019 PPI1 "proton pump interactor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
 Identities = 112/471 (23%), Positives = 216/471 (45%)

Query:   570 KVVVNGGIKFTSEEQNDKTCPEVKENRGIQLTGGEDGDRTFQDVEGIERSDRCETQTSTP 629
             +VV +GG +        K  PE  +N  +    G+D    F  V  + ++          
Sbjct:     4 EVVNSGGFEVAPAPFEGK--PE--KNGKLDQGKGDDAPINFGSVGELPKNAEENNNKVVN 59

Query:   630 EGSTVDASESRNIGVEVVKQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDD 689
               +  +A+E   +  ++    FY LVK   Y D  ++ ++  A  ++++  ++R  + D 
Sbjct:    60 SDAPKNAAEEWPVAKQI--HSFY-LVKYRSYADPKIKAKLDLADKELEKLNKARTGVLDK 116

Query:   690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKN---------AI- 739
             ++  RA   E  + L+   S+ +        KR+E++ +Q  +  +++         AI 
Sbjct:   117 LRAKRAERSELFDLLDPLKSERKGFNTMFDEKRKEMEPLQQALGKLRSNDGGSARGPAIC 176

Query:   740 -SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQ 798
              S ++++  I + ++RI HE++PL EEKQI++EI+ L+  R+++ ++     +++ +  Q
Sbjct:   177 SSEEELNSMIYSYQYRIQHESIPLTEEKQILKEIRLLEGTRDKVIANAAMRAKIKESMGQ 236

Query:   799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA 858
             KD I+ ++K +    D +++      A    + +  +   +++  L  + K   E R +A
Sbjct:   237 KDDIQGQVKLMGAGLDGVKKERQAISARINELSEKLKATKDEITVLENELKTVSEKRDKA 296

Query:   859 YKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDE 918
             Y +   L++Q  + N  +++ +    +A DLA++ +   L+ L   +VE+ + LW +   
Sbjct:   297 YSNIHDLRRQRDETNSEYYQNRTVLNKARDLAAQKNISELEALANAEVEKFISLWCSKKN 356

Query:   919 FRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTE 978
             FR++Y    ++S   R  + DGR   PDE+ PLI P      A +       A   E TE
Sbjct:   357 FREDYEKRILQSLDSRQLSRDGRMRNPDEK-PLIAP----EAAPS------KATPSE-TE 404

Query:   979 QVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEI 1029
              VVP    K   K  P    + D     +  EK   A  V       DDE+
Sbjct:   405 -VVPKAKAKPQPKEEPVSAPKPDATVA-QNTEKAKDAVKVKNVADDDDDEV 453

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=IDA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

UNIPROTKB|Q8IIG7 PF11_0207 "Uncharacterized protein PF11_0207" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 196 (74.1 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
 Identities = 66/339 (19%), Positives = 168/339 (49%)

Query:   663 ENLREQIKAAQSKVDEKTRSR-DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSK 721
             E ++E+IK  + ++ E+ +     ++++I+ ++   KE  E+++  + +E   +E +K  
Sbjct:   520 EEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEVKEEIKEVKEEIKE-VKEE--IKEEIKEV 576

Query:   722 RQEI-DSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEE-KQIIREIKQ-LKQR 778
             ++EI + ++  I  +K  I  +++   I+ ++  I      +KEE K+ I+E+K+ +K+ 
Sbjct:   577 KEEIKEEIKEEIKEVKEEIK-EEVKEEIKEVKEEIKEVKEEIKEEVKEEIKEVKEEIKEV 635

Query:   779 REQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREES 838
             +E+I   I E  E ++  + K++I+E++K +++E     +N I +E   +     H++E 
Sbjct:   636 KEEIKEEIKEVKE-EIKEEVKEEIKEEIKEIKEEL----KNDISSETTKEEKNTEHKKEE 690

Query:   839 EKLKRLLGQ--FKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL----ASK 892
              + K+ + +       E++++  ++ + L++Q  ++       +  T+  +      A  
Sbjct:   691 TEKKKFIPKRVIMYQQELKEKEERNLKLLEQQRKEREMRLQLIRSKTQGTSSTFIPSAKL 750

Query:   893 GDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLI 952
                E+L+     +V+  ++  +NN+       N+N  + L+  K  +   +   +++  +
Sbjct:   751 KHLESLKEEKKKEVKTNIQPKDNNNNNNNNNNNNNNIAVLKNNKNEEQNVI--KKKSIFL 808

Query:   953 RPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDK 991
                     AK +  T I  + ++K E++   + EK+  K
Sbjct:   809 EIAEKTENAKIVEKTDIEEIAKKKREELYKKQLEKITKK 847

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=NAS

GO:0016020 "membrane" evidence=NAS

TAIR|locus:2087115 PPI2 "proton pump interactor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 73/338 (21%), Positives = 155/338 (45%)

Query:   622 CETQTSTPEGSTVDASESRNIGVEVV----KQPF-YFLVKVPRYDDENLREQIKAAQSKV 676
             C+  T T E  TV + +S   G        ++PF ++ VK P YDD  ++ +I  A  ++
Sbjct:    34 CDVSTVTTEDGTVFSGDSSPGGATEEDFPEEKPFSFYFVKQPAYDDPEIKAKIDEAGHEI 93

Query:   677 DEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK 736
             +   + R  + +  ++ +A       ++++ +S     R  ++ K+ E D++   +  ++
Sbjct:    94 NRYNKDRIVVSNAQESEKAEILSLFGQMKSLVSKSEGYRVVIEEKKMEFDALHESLRNLR 153

Query:   737 NA------ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHD 790
              +       S +++D  I    ++I H ++  +EE  +++E     ++ + I  S     
Sbjct:   154 CSTSDQLCFSKEELDHLIYIAHYQIEHGSIGFEEEDWVLKET----EKADGIVLSEDSLA 209

Query:   791 EVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKA 850
             E + + ++   +  ++  ++KE D++     K    +  V K     S+   R+L   KA
Sbjct:   210 EKEASINRVKSMAVELNEVKKELDAI---TWKINHLSDKVGK-----SQNNLRVLDVKKA 261

Query:   851 AD-EIRQEAYKHWQSLKKQAYDKNQH-FWKYKDDTKQANDLASKGDREALQHLCVNQVER 908
                E R  +Y+  + L+ Q  DK +  F++     ++A +LA+ G+   L+    ++ +R
Sbjct:   262 HILEERDRSYERIKMLRIQR-DKGKAAFYQSLPVMRKARELAASGNVRDLEVFASSEADR 320

Query:   909 VLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPD 946
              +  WN++  FR +YV     S   R    DGR   P+
Sbjct:   321 FMTQWNDDKAFRDDYVKRISPSLCERQLNQDGRIKDPE 358

GO:0005737 "cytoplasm" evidence=ISM

GO:0010155 "regulation of proton transport" evidence=ISS

TAIR|locus:504955937 AT2G22795 "AT2G22795" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 146/671 (21%), Positives = 265/671 (39%)

Query:   197 VAVAGVD--LQLGMQIVRGSVTVESERGLDAGHCQYGVSETVVDDLVDPSQETAELDKPS 254
             + V GVD  ++LG + +   V VE +   D G      S+ VV+     + +    DK +
Sbjct:    53 IVVGGVDKVVKLGRKDLIPRV-VEVDEAEDEG------SKNVVESFNSGNGD----DKEN 101

Query:   255 GVAESFPFQIDPENLPVESLKTDPDVALNVSDTTAKPDVDFRDSVVTESSPSGE-VDDME 313
              + E      + E+   E + ++ D    + +      V+  +S V E   +G   ++ E
Sbjct:   102 EIVEGGEENKEKES---EGIVSNEDSNSEIEEKKDSGGVE--ESEVEEKRDNGGGTEENE 156

Query:   314 R----DNEVGKLNVGSG-KSSDSHPVDDAHVNE-VGNGPVRDDLVSVFHNSDAKSETETG 367
             +    ++EV +     G + ++    +++ V E   NG   ++  S    S+ +   E G
Sbjct:   157 KSGTEESEVEERKDNGGTEENEKSGTEESEVEERKDNGGTEENEKSGTEESEVEERKENG 216

Query:   368 FDSVDAEEKVSILASDDQRTEPEVLQGGIDGVDERSISVDNAAVESCTSESVYEESTADV 427
                 +  EK     S++   E +   GG +   E+S   + + VE        EES  + 
Sbjct:   217 --GTEENEKSG---SEESEVEEKKDNGGTEESREKS-GTEESEVEEKKDNGSSEESEVEE 270

Query:   428 KAECE-IENAYVLSFRDVPGNEALXXXXXXXXXXXXXIPEDVNVENVGIQHAGGEKDDHR 486
             K E   I+ +     +D+     +               +D + E V   H   EK    
Sbjct:   271 KKENRGIDESEESKEKDIDEKANIEEARENNYKG-----DDASSEVV---HESEEKTSES 322

Query:   487 SKXXXXXXXXXXXXXXSDDLVCKEVLENARIQFTGGGSDDQAHKEVKEKGGIQFTSGE-- 544
                              +D V K VL N     T  G      K      G +  S E  
Sbjct:   323 ENSEKVEDKSGIKTEEVEDSVIKSVLPNT----TDNGESSSDEKSTGSSSGHESDSLEGI 378

Query:   545 -SDDKTFQEVEGIQ---STDGGTDDKTCKKVVV-NGGIKFTSE-EQNDKTCPEVKENRGI 598
              S+ ++ ++ E ++   +   G    T K     +GG + TSE    +++  +  E +  
Sbjct:   379 KSEGESMEKNELLEKEFNDSNGESSVTGKSTGSGDGGSQETSEVSSQEESKGKESETKDK 438

Query:   599 QLTGG--EDGDRTFQDVEGIERSDRCETQTSTPEGST-VDAS-ESRNIGVEVVKQPFYFL 654
             + +    E  DR  +  E  E S + ET     E    V++S + +N   E  K    FL
Sbjct:   439 EESSSQEESKDRETETKEKEESSSQEETMDKETEAKEKVESSSQEKNEDKETEKIESSFL 498

Query:   655 VKVPRYDDENLREQIKAAQSKVDEK-TRSRDAIRDDIQT-IRASYKEYAEKLEAAISDER 712
              +    +DE   ++  ++Q K +EK T ++D      Q   +    E  EK EA+ S E 
Sbjct:   499 EETKEKEDETKEKEESSSQEKTEEKETETKDNEESSSQEETKDKENEKIEKEEAS-SQEE 557

Query:   713 SARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI 772
             S     ++K +E  S Q      +N   ++  + + +       +E +  KEE     E 
Sbjct:   558 SKENETETKEKEESSSQEETKEKENE-KIEKEESAPQEETKEKENEKIE-KEESASQEET 615

Query:   773 KQLK-QRREQISSSIGEHDE-VQLAFDQKDQIEEKMKFLRKE-ADSLRENVIKAEAATQA 829
             K+ + + +E+  SS  E  E V    ++K+Q+EE  K   ++ ++S +EN +      Q+
Sbjct:   616 KEKETETKEKEESSSNESQENVNTESEKKEQVEENEKKTDEDTSESSKENSVSDTEQKQS 675

Query:   830 VKKLHREESEK 840
              +   +EES K
Sbjct:   676 EETSEKEESNK 686

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)]

 Score = 174 (66.3 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 94/454 (20%), Positives = 203/454 (44%)

Query:   577 IKFTSEEQNDKTCPEVKENRGIQLTGGEDGDRTFQDVEGIERSDRCETQTSTPEGSTVDA 636
             I+   +E+N+K   E KE    +LT  ++ +   +  + +E+ +R E + +         
Sbjct:   194 IEKLKQEENEKLEKEEKERIEKELTDKKEKEEK-ELADKLEK-ERQEKELADKLEKEKKE 251

Query:   637 SESRNIGVEVVKQPFYFLVKVPRYDDEN-LREQI-KAAQSK-VDEKTRSRDAIRDDIQTI 693
              E + +  ++ K+    L K  +  +E  L +++ K +Q K + EK      + D ++  
Sbjct:   252 KEEKELADKLEKER---LDKEKKDKEEKELADKLEKESQEKELAEKLEKEKELADKLEKE 308

Query:   694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEH 753
             +   KE  E+ E  ++D+ +  +  K +++  D ++      + A   D ++      E 
Sbjct:   309 QKE-KEEKERQEKELADKLAKEQKEKEEKELADKLEKERQEKELA---DKLEKE--KQEK 362

Query:   754 RIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEA 813
              +A +    K+EK+ + ++++ KQ +E       E  E +    +K++ EEK K   KE 
Sbjct:   363 ELADKLEKEKQEKESLEKLEKEKQEKELADKLAKEQKEKE----EKEEKEEKEK-QEKEE 417

Query:   814 DSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN 873
                ++  + A AA    +KL +E  EK K+ L + + A+++ +E  +   + K +   K 
Sbjct:   418 KERKDKELAAAAAAAETEKLEKERLEKEKKELEEKELAEKLEKEKLEKELTDKLEKEKKE 477

Query:   874 QHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTL- 932
             +      +  KQ  +LA K ++E  +     + E+ L      ++  KE  +   +    
Sbjct:   478 KELADKLEKEKQDKELADKLEKEQKEKEEKQRKEKELADKLEKEKQDKELADKLAKEKEE 537

Query:   933 --RRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISA-LEREKTEQVVPIKSEKVD 989
               R+ K L  +     ++  L      ++  K+    +    LE+E+ E+ + +K E+  
Sbjct:   538 KERKEKELADKLEKEKKDKELADKVTKEKEEKDKKEKEFKLKLEKEQKEKELKLKQER-- 595

Query:   990 DKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVS 1023
                F E +E+ D++ + +K  K    E  S+T++
Sbjct:   596 --EFAE-KEERDRLER-EKISKSIEKETKSSTIT 625

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

TAIR|locus:2098443 AT3G28770 "AT3G28770" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 166/851 (19%), Positives = 326/851 (38%)

Query:   218 ESERGLDAGHCQYGVSETVVDDLVDPSQETAELDKPSGVAESFPFQIDPENLPVESLKTD 277
             ES +G +  + + G  E++  + ++      EL   + V      +   E    ES +++
Sbjct:   429 ESVKGENLEN-KAGNEESMKGENLENKVGNEELKGNASVEAKTNNESSKEEKREESQRSN 487

Query:   278 PDVALNVSDTTAKPDVDFRDSVVTESSPSGEVDDMERDNEVGKLNVGSGKSS-DSHPVDD 336
              +V +N  +TT   +V+ +   + +S+    +++ E        N   G S+ + H   +
Sbjct:   488 -EVYMN-KETTKGENVNIQGESIGDSTKDNSLENKEDVKPKVDANESDGNSTKERH--QE 543

Query:   337 AHVNE-VGNGPVRDDLVSVFHN--SDAKSETETGFDSVDAEEKVSILASDDQRTEPEVLQ 393
             A VN  V       D +       +D   E  T       E++     ++ +  + E L+
Sbjct:   544 AQVNNGVSTEDKNLDNIGADEQKKNDKSVEVTTNDGDHTKEKREETQGNNGESVKNENLE 603

Query:   394 GGIDGVDERSISVDNAAVESCTSESVYEESTADV-KAECEIENAYVLSFR--DVPGN-EA 449
                +  D++ +  D +      +E+  EE      K      N+ ++  +  +   N E 
Sbjct:   604 ---NKEDKKELKDDESVGAKTNNETSLEEKREQTQKGHDNSINSKIVDNKGGNADSNKEK 660

Query:   450 LXXXXXXXXXXXXXIPEDVNVE-----NVGIQHAGGE-KDDHRSKXXXXXXXXXXXXXXS 503
                             ED   E     N G    G E K++++                S
Sbjct:   661 EVHVGDSTNDNNMESKEDTKSEVEVKKNDGSSEKGEEGKENNKDSMEDKKLENKESQTDS 720

Query:   504 -DDLVCKEVLENARIQFTGGGSDDQA------HKEVKEKGGIQFTSGESDDKTFQEVEG- 555
              DD    +  E A+I + G   DD++       KE KE    +       +K  + V+G 
Sbjct:   721 KDDKSVDDKQEEAQI-YGGESKDDKSVEAKGKKKESKENKKTKTNENRVRNKE-ENVQGN 778

Query:   556 ---IQSTDGGT--DDKTCKKVVVNGGIKFTSEEQNDKTCPEVKENRGIQLTGGEDGDRTF 610
                 +  + G   + K  K V      K +S E  D    E KE  G      ++  + +
Sbjct:   779 KKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRD----EAKERSGEDNKEDKEESKDY 834

Query:   611 QDVEGIERSDR--CETQTSTPEGSTVDASESRNIGVEVVKQPFYFLVK--VPRYDDENLR 666
             Q VE  E+++    +T     E S  D  + R++ V+  K+      +  V R D  + +
Sbjct:   835 QSVEAKEKNENGGVDTNVGNKEDSK-DLKDDRSVEVKANKEESMKKKREEVQRNDKSSTK 893

Query:   667 EQIKAAQSK-VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEI 725
             E    A +  +D +  S ++++      +   KE   K     S ++  ++  K K++  
Sbjct:   894 EVRDFANNMDIDVQKGSGESVKYKKDEKKEGNKE-ENKDTINTSSKQKGKDKKKKKKESK 952

Query:   726 DSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSS 785
             +S   +    K     +++     N +     E   LKEE +  +E K+ +    + +  
Sbjct:   953 NSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASK-NRE 1011

Query:   786 IGEHDEVQLAFDQKDQIEEKMKF--LRKEADSLRENVIKAEAATQAVKKLHREESEKLKR 843
               E++E +    ++ + E+K      R+E DS      K +  ++ +K   +EE  K K+
Sbjct:  1012 KKEYEEKKSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKK 1071

Query:   844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCV 903
                  K+  +  ++ ++  +S+KK+  DK +   K  +++K       K D E L+    
Sbjct:  1072 ESENHKSKKKEDKKEHEDNKSMKKEE-DKKEK--KKHEESKSRKKEEDKKDMEKLEDQNS 1128

Query:   904 NQVERVLELWNNNDEFRKEYVNS-NIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAK 962
             N+ +      + N++ + ++V      S  +  K  + +S   + E+   +    D+  K
Sbjct:  1129 NKKKE-----DKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEK 1183

Query:   963 NISLTQISALERE-KTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTT 1021
               S  Q    E+E K  +   +K  + D K    V E   Q    K+  KP   +  +T 
Sbjct:  1184 KSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKKEKNKPKDDKKNTTK 1243

Query:  1022 VSGRDDEIEEA 1032
              SG   E  E+
Sbjct:  1244 QSGGKKESMES 1254

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

ZFIN|ZDB-GENE-060503-506 si:ch211-250g4.3 "si:ch211-250g4.3" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 88/384 (22%), Positives = 181/384 (47%)

Query:   656 KVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715
             K  R + +N++++I+  Q ++   T  +  +   I  ++A      E+++    +    R
Sbjct:   156 KQERTEIDNMKQKIQRQQDEITRMTTEKGQLERTITHMKAEIDHIRERMDRNKEEVNRER 215

Query:   716 ESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE-IKQ 774
             E ++  R ++ + QS +   +     D+I    +N+E  I +ETL  +EE +  RE  K 
Sbjct:   216 ERVEQMRSDLQAEQSSLQQKR-----DEIMTERQNLE-MIRYETLRQQEELESNRESTKH 269

Query:   775 LKQRREQISSSIG-EHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKL 833
               +R EQ+ S+I  + +E+++   +  + ++ M+ ++ E +  +  + K +   + +K+ 
Sbjct:   270 EMERMEQMKSAIQVQINEIEMKIGETQKAKDLMEQMKAEIEDEKNELEKKK---EDIKR- 325

Query:   834 HREESEKLKRLLGQFKAADEIR-QEAYKHWQSLKKQAY-DKNQHFWKY-KDDTKQANDLA 890
              R++ E++K  L Q K   E R  E  K  + L+++A   + +   KY +D+ ++  +  
Sbjct:   326 QRDQFEQIKLDLQQVKMEMEQRWHETEK--EGLEQRAVIQREKEQLKYLQDEIQRVREEV 383

Query:   891 SKGDREALQ-HLCVNQVE-RVLE---LWNN--NDEFRKEYVNSNIRSTLRR-LKTLDGRS 942
              +    + Q H  ++Q+  + LE   L  N  +D  RKE     ++  + R  + L    
Sbjct:   384 ERNREFSKQEHARISQLRAQALEENNLIENKWHDILRKEKDLEEMKHEIERGREELVMNG 443

Query:   943 LGPDEEAPLIRPFLNDRVAKNISLT-QISALEREKTEQVVPIKSEKVDDKPFPEVREQGD 1001
                 +E   I     D  +  IS+  ++  ++RE TE++  IK+E   DK   E  +Q D
Sbjct:   444 ELVKKEWEKIEQAKVDIQSHMISMEGRVDEIKRE-TERLKHIKTEMQRDKDALE--KQKD 500

Query:  1002 QIAKFKKPEKPSRAENVSTTVSGR 1025
                K K+  +  R E V+  +  R
Sbjct:   501 DTRKAKEEAERKRYEIVTEELEHR 524

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9X0R4 smc "Chromosome partition protein Smc" [Thermotoga maritima MSB8 (taxid:243274)]

 Score = 181 (68.8 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
 Identities = 84/372 (22%), Positives = 173/372 (46%)

Query:   666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE--RSARESLKSKRQ 723
             R ++K  + +++E  R     RD++ +++   +E  +  EA +  E    +R+S  S + 
Sbjct:   668 RIKLKHLEQEMEETERQIAEKRDELASLKTE-QENLKNQEALVQRELFELSRKS-SSTKT 725

Query:   724 EIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS 783
              +  +   IN ++    V++++  +  +E+R   E L  + EK I  EI +LKQ RE + 
Sbjct:   726 VLSEILRSINQLQE--EVENLEKLL--VEYRAKEEGLNARREK-IFEEIDELKQNRENLQ 780

Query:   784 SSIGEHDEVQLAFDQK--DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKL 841
              S+ E+ E +L  ++K  D++ EK+  LR E  +L E   + E   +   K+     E++
Sbjct:   781 RSLTEYSE-ELEKEKKILDELNEKIFTLRAEVGNLLETKDRYEKEMRDTGKM----IERI 835

Query:   842 KRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHL 901
              R     K      +E  ++++   ++   + +H  K  D   +A  L   G  E ++ L
Sbjct:   836 ARETEDIKLQMTSLEEEMENYRKFIREHEREIEHLKKEMDSVFEAMKLHRSGKEEKMREL 895

Query:   902 CVNQVE-RVLELWNNNDEFRKEY--VNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLND 958
                +VE R+ EL    +  R     ++  ++ T  ++  L     G +E+       L++
Sbjct:   896 --QEVENRMDELKEEKERLRNHLHQIDLALQETRLKIANLLEEFSGNEEDVEE----LDE 949

Query:   959 RVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENV 1018
                + I   QI  LE  K + + P+    +D+  + ++RE+ ++I K K+  + ++ + +
Sbjct:   950 EKLEEI-YRQIKDLEN-KIKYLGPVDLTAIDE--YEKLREEYEEILKQKEDLEEAKRK-L 1004

Query:  1019 STTVSGRDDEIE 1030
                +   D E E
Sbjct:  1005 EEIIEKTDREAE 1016

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|P82094 TMF1 "TATA element modulatory factor" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
 Identities = 81/342 (23%), Positives = 160/342 (46%)

Query:   663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE--RSARESLKS 720
             +   ++I  A+ KV    + RDA + +I+ I+   +E A +L ++ + +  +   E ++ 
Sbjct:   501 DEFTQRIAEAEKKVQLACKERDAAKKEIKNIK---EELATRLNSSETADLLKEKDEQIRG 557

Query:   721 KRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQL----- 775
               +E + +  +   + N+  +  +    +  E+ +A     +KE ++ ++ +KQ+     
Sbjct:   558 LMEEGEKLSKQ--QLHNSNIIKKLRAKDKENENMVAKLNKKVKELEEELQHLKQVLDGKE 615

Query:   776 ---KQRREQIS--SSIGEHDEVQLAFDQ--KDQIEEKMKFLRKEADSLRENVIKAEAATQ 828
                KQ RE I   +S+ E  E  L   Q   D++EEK + ++   DS  + +     A  
Sbjct:   616 EVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHKAN- 674

Query:   829 AVKKLHREE---SEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQ 885
             A K    +E   S ++K       A ++ ++EA +  ++L  Q  D      +    T+Q
Sbjct:   675 AAKDSEAQEAALSREMKAKEELSAALEKAQEEARQQQETLAIQVGDLRLALQR----TEQ 730

Query:   886 ANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGP 945
             A   A K D   L+H      +R+ E  N N E  +  V+S  R  LR+++ L   +LG 
Sbjct:   731 A--AARKEDY--LRHEIGELQQRLQEAENRNQELSQS-VSSTTRPLLRQIENLQA-TLGS 784

Query:   946 DEEA-PLIRPFLNDRVAKNISLTQISALEREK--TEQVVPIK 984
                +   +   L+DR+ ++ +L   +A+ERE+  TE+++  K
Sbjct:   785 QTSSWEKLEKNLSDRLGESQTLLA-AAVERERAATEELLANK 825

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003712 "transcription cofactor activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002957001 SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (662 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1222
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-12
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-10
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-08
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	6e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-06
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-06
TIGR02794	346	TIGR02794, tolA_full, TolA protein	7e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-06
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	8e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-05
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	2e-05
COG3064	387	COG3064, TolA, Membrane protein involved in colici	3e-05
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	3e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-05
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	4e-05
pfam10147	217	pfam10147, CR6_interact, Growth arrest and DNA-dam	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	6e-05
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	6e-05
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	7e-05
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	7e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-05
COG3064	387	COG3064, TolA, Membrane protein involved in colici	8e-05
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	8e-05
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	2e-04
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	2e-04
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	2e-04
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-04
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	3e-04
TIGR01069	771	TIGR01069, mutS2, MutS2 family protein	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	4e-04
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	5e-04
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	6e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	7e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-04
pfam04502	321	pfam04502, DUF572, Family of unknown function (DUF	8e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	8e-04
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	9e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	0.001
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.001
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.001
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.001
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.001
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.001
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.002
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.002
PLN02316	1036	PLN02316, PLN02316, synthase/transferase	0.002
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	0.003
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.003
TIGR02223	298	TIGR02223, ftsN, cell division protein FtsN	0.003
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	0.003
PLN02381	1066	PLN02381, PLN02381, valyl-tRNA synthetase	0.003
COG5281	833	COG5281, COG5281, Phage-related minor tail protein	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.004
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.004
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
PLN03086	567	PLN03086, PLN03086, PRLI-interacting factor K; Pro	0.004

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 70.9 bits (173), Expect = 3e-12
 Identities = 105/503 (20%), Positives = 216/503 (42%), Gaps = 44/503 (8%)

Query: 663  ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722
            +  +++ + A+ K D   +  +  +   +  +A  +  A++ EAA     +A +  +  +
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377

Query: 723  QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782
            ++ D+ + +    K A                        +E+K+   E+K+    +++ 
Sbjct: 1378 KKADAAKKKAEEKKKADEAKK-----------------KAEEDKKKADELKKAAAAKKKA 1420

Query: 783  SSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLH-REESEKL 841
              +  + +E + A + K + EE      K+AD  ++   +A+ A +A KK    +++++ 
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEA-----KKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475

Query: 842  KRLLGQFKAADEIR---QEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGD--RE 896
            K+   + K ADE +   +EA K     KK A  K +     K +  +  D A K +  ++
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535

Query: 897  ALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFL 956
            A +     + ++  EL    +E +K           ++ +     +L   EEA       
Sbjct: 1536 ADEAKKAEEKKKADEL-KKAEELKKAEEKKKAEEA-KKAEEDKNMALRKAEEAKKAEEAR 1593

Query: 957  NDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAE 1016
             + V K     +    E  K  +   IK+E++  K   E +++ +Q+ K K+ E+  +AE
Sbjct: 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL--KKAEEEKKKVEQLKK-KEAEEKKKAE 1650

Query: 1017 NVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQE 1076
             +           EE K +  +  K+ EE  +KAEE +K E   K   +   +E  +A++
Sbjct: 1651 ELKK-------AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703

Query: 1077 ALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQS 1136
            A E KK+ AE+ +    L+  +E  + + E  K+  +++K+KA  A+     +EEE  + 
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK----KDEEEKKKI 1759

Query: 1137 SETPLEVPRTPELRDKPSTATKK 1159
            +    E  +  E   K   A  +
Sbjct: 1760 AHLKKEEEKKAEEIRKEKEAVIE 1782

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 970  SALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEI 1029
             +++ E       I++  VD      V +Q ++I + KKP      E         ++  
Sbjct: 25   HSVKPEPGGGGEIIQAVLVDPG---AVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAE 81

Query: 1030 EEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQ 1089
            ++   E  +  + E+  A +   K+ E+A  +  E+++  E+AKA++A E K +   +A+
Sbjct: 82   KQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAE 141

Query: 1090 TRAALRAQKEAEQKEKEREKRARKK---EKRKAAAAEDTAITNEEEYTQSSETPLEVPRT 1146
             +A   A+K+AE++ K +     KK   E +K A AE  A    +   ++ E   +    
Sbjct: 142  KKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAA 201

Query: 1147 PELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRG 1183
                   + A  + + A+    +A+ K+    L +  
Sbjct: 202  KAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDIF 238

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 59.8 bits (144), Expect = 9e-09
 Identities = 101/509 (19%), Positives = 210/509 (41%), Gaps = 45/509 (8%)

Query: 670  KAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAE---KLEAAISDERSARESLKSKRQEID 726
            KA  ++  E  R  +  R   +  +A   + AE   K E A  D   A+++ + +  E  
Sbjct: 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254

Query: 727  SVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSI 786
                   M   A        +I+  E R A E L   EEK+   E K+ ++++ +   + 
Sbjct: 1255 RKFEEARMAHFARR----QAAIKAEEARKADE-LKKAEEKKKADEAKKAEEKK-KADEAK 1308

Query: 787  GEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG 846
             + +E + A + K + EE     +K+AD+ ++   +A+ A +A K      +++ +    
Sbjct: 1309 KKAEEAKKADEAKKKAEEA----KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364

Query: 847  QFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQV 906
            + +AA++ ++EA K   + KK+A +K     K  +  K+A +   K D          ++
Sbjct: 1365 KAEAAEKKKEEAKKKADAAKKKAEEKK----KADEAKKKAEEDKKKAD----------EL 1410

Query: 907  ERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISL 966
            ++        DE +K+          ++      ++    +     +     + A+    
Sbjct: 1411 KKAAAAKKKADEAKKK------AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA-- 1462

Query: 967  TQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRD 1026
             +  A E +K ++    K +  + K   E +++ ++  K     K +         + + 
Sbjct: 1463 -KKKAEEAKKADE---AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518

Query: 1027 DEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAE 1086
            +E ++A E       ++ + A+KAEEK+K +   K  E ++ EEK KA+EA + ++    
Sbjct: 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED--- 1575

Query: 1087 KAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRT 1146
                  ALR  +EA++ E+ R +   K  + +     + A   EE   ++ E        
Sbjct: 1576 ---KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632

Query: 1147 PELRDKPSTATKKPKKASQFTKQAKAKSI 1175
             ++        ++ KKA +  K  +   I
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKI 1661

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 1e-08
 Identities = 39/234 (16%), Positives = 108/234 (46%), Gaps = 7/234 (2%)

Query: 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722
           E L E++   + +++E     +    +I+ +++  +E  E+LE    +    +E ++   
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301

Query: 723 QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782
            EI  ++ R+  ++N +  ++++  +  ++ +I        EE++ + E  +L+Q   ++
Sbjct: 302 GEISLLRERLEELENEL--EELEERLEELKEKIE-ALKEELEERETLLE--ELEQLLAEL 356

Query: 783 SSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842
             +  E +  +      +++EE  + LR+E   L   + +     + +K+      E+L+
Sbjct: 357 EEAKEELE--EKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLE 414

Query: 843 RLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDRE 896
           RL  + +   E  +E     + L+ +  + N+   + ++  ++  D   + +RE
Sbjct: 415 RLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 58.2 bits (140), Expect = 3e-08
 Identities = 90/457 (19%), Positives = 181/457 (39%), Gaps = 27/457 (5%)

Query: 663  ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS---------YKEYAEKLEAAISDERS 713
            E   E+ +AA+ K +E  +  DA +   +  + +          K+ A++L+ A + ++ 
Sbjct: 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419

Query: 714  ARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK 773
            A E  K K +E           + A   D+     +  E + A E     EE +   E K
Sbjct: 1420 ADE-AKKKAEEKKKADEAKKKAEEAKKADEAKK--KAEEAKKAEEAKKKAEEAKKADEAK 1476

Query: 774  QLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLR--ENVIKAEAATQAVK 831
            +  +  ++   +  + +E +   D+  +  E     +K+AD  +  E   KA+ A +A +
Sbjct: 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEA----KKKADEAKKAEEAKKADEAKKAEE 1532

Query: 832  KLHREESEKL--KRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL 889
                +E++K   K+   + K A+E+++   K      K+A +      +  ++ K+A + 
Sbjct: 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE- 1591

Query: 890  ASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEA 949
                  E ++     +  +  E     +   K      ++      K ++       EE 
Sbjct: 1592 --ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA---EELKKAEEEKKKVEQLKKKEAEEK 1646

Query: 950  PLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKP 1009
                          I   + +    E  ++    K  + D+K   E  ++  + AK  + 
Sbjct: 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706

Query: 1010 EKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLE 1069
             K   AE        +  E EE K +  +  KE EE  +KAEE +K+E   K     + E
Sbjct: 1707 LKKKEAEEKKKAEELKKAE-EENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765

Query: 1070 EKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKE 1106
            E+ KA+E  + K+ + E+       + + E ++K K+
Sbjct: 1766 EEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD 1802

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 57.5 bits (138), Expect = 5e-08
 Identities = 100/532 (18%), Positives = 221/532 (41%), Gaps = 30/532 (5%)

Query: 656  KVPRYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSAR 715
            +  + +D    E +K A+    +   ++ A  +        ++E      A       A 
Sbjct: 1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE 1275

Query: 716  ESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQL 775
            E+ K+   +    + + +  K A      D + +  E     +    K E +  ++    
Sbjct: 1276 EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE-EAKKKADAA 1334

Query: 776  KQRREQISSSI--------GEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAAT 827
            K++ E+   +            DE + A ++ +  E+K +  +K+AD+ ++   + + A 
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394

Query: 828  QAVKKLH--REESEKLKRLLGQFKAADEIRQEA--YKHWQSLKKQAYD--KNQHFWKYKD 881
            +A KK    ++++++LK+     K ADE +++A   K     KK+A +  K     K  +
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454

Query: 882  DTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGR 941
            + K+A +   K +         ++ ++  E     DE +K+   +  ++   +      +
Sbjct: 1455 EAKKAEEAKKKAEEAKK----ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510

Query: 942  SLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGD 1001
                 ++A   +     + A+        A E +K E+      +K D+    E  ++ +
Sbjct: 1511 KADEAKKAEEAKKADEAKKAEEAK----KADEAKKAEEK-----KKADELKKAEELKKAE 1561

Query: 1002 QIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAK 1061
            +  K ++ +K    +N++   +    + EEA+ E      EEE+  +  E K+ EEA  K
Sbjct: 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621

Query: 1062 LREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAA 1121
              E ++ EE+ K  E L  KK+ AE+ +    L+  +E  + +   E +  +++K+KA  
Sbjct: 1622 AEELKKAEEEKKKVEQL--KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679

Query: 1122 AEDTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAK 1173
            A+      ++      +   E  +  EL+ K +   KK ++  +  ++ K K
Sbjct: 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 57.1 bits (137), Expect = 7e-08
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 3/183 (1%)

Query: 1007 KKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQR 1066
            K  E+  +AE        R  E         +    + E ARKA+E +K E   K  E +
Sbjct: 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAK 1296

Query: 1067 RLEEKAKAQEALER--KKRIAEKAQTRAALRAQK-EAEQKEKEREKRARKKEKRKAAAAE 1123
            + EEK KA EA ++  + + A++A+ +A    +K +A +K+ E  K+A +  K +A AA 
Sbjct: 1297 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356

Query: 1124 DTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRG 1183
            D A   EE+   + +   E  +  +   K +   KK  +A +  ++ K K+  L      
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416

Query: 1184 KRR 1186
            K++
Sbjct: 1417 KKK 1419

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 56.7 bits (136), Expect = 8e-08
 Identities = 115/523 (21%), Positives = 199/523 (38%), Gaps = 74/523 (14%)

Query: 661  DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720
            D +   E    A++ V +    + + +D         KE     EA       A E+ K+
Sbjct: 1051 DIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFD----AKEDNRADEATEEAFGKAEEAKKT 1106

Query: 721  KRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRRE 780
            +  + +  +      K A      + + +  + R A E    ++ K++    K    R+ 
Sbjct: 1107 ETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKA 1166

Query: 781  QISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840
            + +    +  + + A  +K +   K + LRK      E+  KAEAA +A ++   EE+ K
Sbjct: 1167 EEARKAEDAKKAEAA--RKAEEVRKAEELRKA-----EDARKAEAARKAEEERKAEEARK 1219

Query: 841  LKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQH 900
                     A D  + EA K  +  KK A +        K + ++ N+   K +   + H
Sbjct: 1220 ---------AEDAKKAEAVKKAEEAKKDAEEAK------KAEEERNNEEIRKFEEARMAH 1264

Query: 901  LCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRV 960
                Q     E     DE +K                         EE            
Sbjct: 1265 FARRQAAIKAEEARKADELKKA------------------------EEKKKADEAKKAEE 1300

Query: 961  AKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVST 1020
             K     +  A E +K ++           K   E +++ D  AK K  E    AE    
Sbjct: 1301 KKKADEAKKKAEEAKKADEA---------KKKAEEAKKKADA-AKKKAEEAKKAAEAAKA 1350

Query: 1021 TVSGRDDEIEEAKE--EVPKLTKEE-----EEMARKAEEKRK-EEATAKLREQRRLEEKA 1072
                  DE E A+E  E  +  KEE     +   +KAEEK+K +EA  K  E ++  ++ 
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410

Query: 1073 KAQEALERKKRIAEKA--QTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNE 1130
            K   A ++K   A+K   + + A  A+K+AE+ +K  E + + +E +KA  A+  A    
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA---- 1466

Query: 1131 EEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAK 1173
            EE  ++ E   +     +  +    A +  KKA +  K A+AK
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509

Length = 2084

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 55.9 bits (135), Expect = 1e-07
 Identities = 76/467 (16%), Positives = 180/467 (38%), Gaps = 56/467 (11%)

Query: 663  ENLREQIKAAQSKVD----EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL 718
            E L+E IK A++K++    + +   + I D ++ +    KE  +  E     E    E L
Sbjct: 174  ELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEI---QEEQEEEEL 230

Query: 719  KSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEE-KQIIREIKQLKQ 777
            + + + ++   + +   K  +   ++   +  +E          +EE +++ R +++L++
Sbjct: 231  EQEIEALEERLAELEEEKERLE--ELKARLLEIESLELEALKIREEELRELERLLEELEE 288

Query: 778  RREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREE 837
            + E++     E +E++   +    + E+++ L ++  SL E + K E   + ++    E 
Sbjct: 289  KIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348

Query: 838  SEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREA 897
            +E+   L    +   +  +E  +  +   ++A ++ +   +   + K+     S    E 
Sbjct: 349  AEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI 408

Query: 898  LQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLN 957
             + L                E   E +   +      +K L+ +                
Sbjct: 409  QEEL-------------EELEKELEELERELEELEEEIKKLEEQI--------------- 440

Query: 958  DRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGD-QIAKFKKPEKPSRAE 1016
                  +   ++   E     +  P+  +++ ++   E+ E  + ++ + ++        
Sbjct: 441  ----NQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELS----- 491

Query: 1017 NVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQE 1076
                    R+ E  E +EE+ +L KE  E+  +  E  + E   K   + +LE+     E
Sbjct: 492  --------REKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLE 543

Query: 1077 ALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAE 1123
             LE  K   +  Q +  LR  ++  Q+ KE  +  R    RK    E
Sbjct: 544  ELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEE 590

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.8 bits (135), Expect = 1e-07
 Identities = 45/273 (16%), Positives = 112/273 (41%), Gaps = 23/273 (8%)

Query: 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722
           E L E+I+  + K+ E  ++   +R +++ +    ++  ++LE       + R+ L    
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 723 QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKE--------EKQIIREIKQ 774
            E++ ++ RI  +   ++  +++  I  +E R+      L E        E QI +  ++
Sbjct: 740 AEVEQLEERIAQLSKELT--ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797

Query: 775 LKQRREQISSSIGEHDEVQLAFDQKDQ-----------IEEKMKFLRKEADSLRENVIKA 823
           LK  RE +     E   +        +            E +++ L ++ + L E++   
Sbjct: 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857

Query: 824 EAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT 883
            A  + +++L  E   +L+ LL +  + +E         + L ++  +      + + + 
Sbjct: 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917

Query: 884 KQANDL--ASKGDREALQHLCVNQVERVLELWN 914
           ++  +     +   E L+    N  ER+ E ++
Sbjct: 918 EELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 55.5 bits (134), Expect = 2e-07
 Identities = 65/478 (13%), Positives = 185/478 (38%), Gaps = 37/478 (7%)

Query: 661  DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS 720
            + E   E+++     +       + + + ++++    ++  EKLE   S+     E    
Sbjct: 295  ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNE 354

Query: 721  KRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE-IKQLKQRR 779
              + ++     +        +++++  +     R+      ++E K+ + E    L++ +
Sbjct: 355  LAKLLEERLKELE-----ERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQ 409

Query: 780  EQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKK-----LH 834
            E++     E +E++    + +++EE++K L ++ + L    +       A +K       
Sbjct: 410  EELEELEKELEELE---RELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQE 466

Query: 835  REESEKLKRLLGQFKAADEIRQEAYK-HWQSLKKQAYDK----NQHFWKYKDDTKQANDL 889
              E  + + L       +E+ +E  +   ++  ++  ++     +   +   +  +  + 
Sbjct: 467  LPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEA 526

Query: 890  ASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEA 949
              +   E L+ L       + EL    ++ + + +   +R    RL+ L        EE 
Sbjct: 527  LKEELEEKLEKL----ENLLEELEELKEKLQLQQLKEELRQLEDRLQELKEL----LEEL 578

Query: 950  PLIRPFLNDRVAKNISLTQISALERE---KTEQVVPIKSEKVDDKPFPEVREQGDQIAKF 1006
             L+R    +       L ++    +E   +  Q+  +       +   E+ E  +++   
Sbjct: 579  RLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESE 638

Query: 1007 KKP--EKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLRE 1064
             +    +    E +   +   ++++EE + E+ +   +  E   + EEK +E    +   
Sbjct: 639  LEKLNLQAELEELLQAALEELEEKVEELEAEIRRE-LQRIENEEQLEEKLEELEQLEEEL 697

Query: 1065 QRRLEEKAKAQEALERKKRIAEKAQTR----AALRAQKEAEQKEKEREKRARKKEKRK 1118
            ++  EE  +  + L   +++ E+ ++R      L+ + E  +K  E  +  R+K  + 
Sbjct: 698  EQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKA 755

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 55.1 bits (132), Expect = 3e-07
 Identities = 113/576 (19%), Positives = 226/576 (39%), Gaps = 35/576 (6%)

Query: 608  RTFQDVEGIERSDRCETQTSTPEGSTV-----DASESRNIGVEVVKQPFYFLVKVPRYDD 662
            R  ++    E + + E                DA E++    E   +      +      
Sbjct: 1206 RKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265

Query: 663  ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722
               +  IKA +++  ++ +  +  +   +  +A  K+ A++ +    + + A E  K K 
Sbjct: 1266 ARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE-AKKKA 1324

Query: 723  QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782
            +E    + + +  K               E   A +     EEK    E K+ ++ +++ 
Sbjct: 1325 EE---AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK-EEAKKKA 1380

Query: 783  SSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLH-REESEKL 841
             ++  + +E + A + K + EE     +K+AD L++     + A +A KK   ++++++ 
Sbjct: 1381 DAAKKKAEEKKKADEAKKKAEED----KKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436

Query: 842  KRLLGQFKAADEIR---QEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREAL 898
            K+   + K ADE +   +EA K  ++ KK    K     K K +  +  D A K   EA 
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496

Query: 899  QHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLND 958
            +    ++ ++  E     DE +K       +      K  + +     ++A   +     
Sbjct: 1497 KK--ADEAKKAAEAKKKADEAKKA---EEAKKADEAKKAEEAKKADEAKKAEEKKKADEL 1551

Query: 959  RVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENV 1018
            + A+ +      A E++K E+    K  + D        E+  +  + +  E     E  
Sbjct: 1552 KKAEELK----KAEEKKKAEEA---KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604

Query: 1019 STTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQ-RRLEEKAKAQEA 1077
                +    + EEAK +  +L K EEE  +  + K+KE    K  E+ ++ EE+ K + A
Sbjct: 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664

Query: 1078 LERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSS 1137
             E KK   +K +   A    K+AE+ EK+  +  +K+ +    A E      EE+     
Sbjct: 1665 EEAKKAEEDKKKAEEA----KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720

Query: 1138 ETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAK 1173
                E     +  +    A +  KKA +  K  + K
Sbjct: 1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756

Length = 2084

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 52.9 bits (127), Expect = 6e-07
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 1028 EIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEK 1087
            E ++  EE  K    +++ A +A  K    A AK   + +    A  + A E KK+   +
Sbjct: 115  EQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAE 174

Query: 1088 AQTRAALRAQKEAEQKEK-----EREKRARKKEKRKAAAAED 1124
            A  +AA  A+K+AE +       E +K+A  + K+KAAA   
Sbjct: 175  AAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK 216

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 1/147 (0%)

Query: 1028 EIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEK 1087
            + ++A E+      E+E +A + ++K+ EEA  +   +++  E+A A+ A   K +   +
Sbjct: 93   QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAE 152

Query: 1088 AQTRAALRAQKEAEQKEKER-EKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRT 1146
            A+  AA   +  AE K+K   E   +   + K  A  + A     E  + +E   +    
Sbjct: 153  AKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAA 212

Query: 1147 PELRDKPSTATKKPKKASQFTKQAKAK 1173
             E + K +   K     +    +A A+
Sbjct: 213  AEAKKKAAAEAKAAAAKAAAEAKAAAE 239

Length = 387

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 52.5 bits (125), Expect = 2e-06
 Identities = 105/549 (19%), Positives = 222/549 (40%), Gaps = 77/549 (14%)

Query: 591  EVKENRGIQLTGGEDGDRTFQDVEGIERSDRCETQTSTPEGSTVDASESRNIGVEVVKQP 650
            E K      +   E    +++D +   + D    + +        A E++       ++ 
Sbjct: 1057 EGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGK--AEEAKKTETGKAEEA 1114

Query: 651  FYFLVKVPRYDDENLREQIKAAQS--KVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAI 708
                    + +D    E+ + A+   K +E  ++ DA R +I    A   E A K E A 
Sbjct: 1115 RKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI----ARKAEDARKAEEAR 1170

Query: 709  SDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQI 768
              E + +     K +E+     +   ++ A      + + +  E R A E    ++ K+ 
Sbjct: 1171 KAEDAKKAEAARKAEEV----RKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKA 1226

Query: 769  --IREIKQLKQRREQ--------ISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLR- 817
              +++ ++ K+  E+         +  I + +E ++A   + Q   K +  RK AD L+ 
Sbjct: 1227 EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK-ADELKK 1285

Query: 818  -ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIR---QEAYKHWQSLKKQAYDKN 873
             E   KA+ A +A +K   +++++ K+   + K ADE +   +EA K   + KK+A +  
Sbjct: 1286 AEEKKKADEAKKAEEK---KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA- 1341

Query: 874  QHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLR 933
                K   +  +A   A+  + EA +       ++  E     D  +K+           
Sbjct: 1342 ----KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK----------- 1386

Query: 934  RLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPF 993
                                    +   K     + +  +++K +++    + K   K  
Sbjct: 1387 -----------------------AEEKKKADEAKKKAEEDKKKADELKKAAAAK---KKA 1420

Query: 994  PEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKL--TKEEEEMARKAE 1051
             E +++ ++  K  + +K +     +     + +E ++A+E   K    K+ +E  +KAE
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480

Query: 1052 EKRK-EEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKR 1110
            E +K +EA  K  E ++  ++AK     ++K   A+KA+        K+AE+ +K  E +
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540

Query: 1111 ARKKEKRKA 1119
             + +EK+KA
Sbjct: 1541 -KAEEKKKA 1548

Length = 2084

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 40/195 (20%), Positives = 89/195 (45%), Gaps = 18/195 (9%)

Query: 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724
           LR++      K DE       +R+  Q +R    E  E+++            L+  R+E
Sbjct: 32  LRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKE 91

Query: 725 IDSVQSRIN-MMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQIS 783
              ++ + N       S+  ++  I  +E +     L  +EE++++++IK+L++  E   
Sbjct: 92  YRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAK 151

Query: 784 SSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR 843
            ++ E+++++    + D+       L+K+A  + E           +++L  E  E  + 
Sbjct: 152 KALEENEKLKELKAEIDE-------LKKKAREIHEK----------IQELANEAQEYHEE 194

Query: 844 LLGQFKAADEIRQEA 858
           ++  F+ ADE+R+EA
Sbjct: 195 MIKLFEEADELRKEA 209

Length = 294

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 4e-06
 Identities = 36/213 (16%), Positives = 92/213 (43%), Gaps = 22/213 (10%)

Query: 663  ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722
            E L ++I+  + +++E     D + ++++ +    +E  E+LE   +++    + LK   
Sbjct: 824  ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELE 883

Query: 723  QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI---------- 772
            +E + ++  +  +++   + ++   I  +  R+      L+  +  + E+          
Sbjct: 884  EEKEELEEELRELES--ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED 941

Query: 773  ---KQLKQRREQISSSIGEHDEVQL-AFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQ 828
                +L++  E++   I     V L A ++ +++EE+ + L+ + + L E   K     +
Sbjct: 942  TLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIE 1001

Query: 829  AVKKLHREESEKLKRLLGQFKAADEIRQEAYKH 861
             + K      EK +R    F   +E   E +K 
Sbjct: 1002 ELDK------EKRERFKETFDKINENFSEIFKE 1028

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.9 bits (122), Expect = 4e-06
 Identities = 79/491 (16%), Positives = 181/491 (36%), Gaps = 34/491 (6%)

Query: 663  ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEK---LEAAISDERSARESLK 719
            E L E           +  +     ++++ +    +E  EK   LE    +     E L+
Sbjct: 249  ERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308

Query: 720  SKRQEIDSVQSRINMMKNAIS-VDDIDGSIRNMEHRIAHETLPLKEEKQIIREI-KQLKQ 777
              R  ++ ++  +  +K+    ++ ++  +  +E  +        E  +++ E  K+L++
Sbjct: 309  GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368

Query: 778  RREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREE 837
            R E++        E++ A ++  Q+EE ++ L++E   L   + + +   + ++K   E 
Sbjct: 369  RLEELEK------ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEEL 422

Query: 838  SEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREA 897
              +L+ L  + K  +E   +       + + A    +          Q      + +   
Sbjct: 423  ERELEELEEEIKKLEEQINQLESKELMIAELAGAGEK-----CPVCGQELPEEHEKELLE 477

Query: 898  LQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAP----LIR 953
            L  L + ++E  L       E R+E     +   LR L+      L  +E          
Sbjct: 478  LYELELEELEEELSREKEEAELREEI--EELEKELRELEEELIELLELEEALKEELEEKL 535

Query: 954  PFLNDRVAKNISL---TQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPE 1010
              L + + +   L    Q+  L+ E  +    ++  K   +    +R + +++ + ++  
Sbjct: 536  EKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERL 595

Query: 1011 KPSRAENVSTTVSGRDDEIEEAKEEVPKLT-----KEEEEMARKAEEKRKEEATAKLREQ 1065
            K    +     +  R  ++EE  + +         +E EE      EK   +A  +   Q
Sbjct: 596  K--ELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQ 653

Query: 1066 RRLEE-KAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAED 1124
              LEE + K +E     +R  ++ +    L  + E E ++ E E    ++E  +      
Sbjct: 654  AALEELEEKVEELEAEIRRELQRIENEEQLEEKLE-ELEQLEEELEQLREELEELLKKLG 712

Query: 1125 TAITNEEEYTQ 1135
                  EE   
Sbjct: 713  EIEQLIEELES 723

Length = 908

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 49.4 bits (118), Expect = 7e-06
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 19/174 (10%)

Query: 968  QISALEREKTEQVVPIKSEKVD------DKPFPEVREQGDQIAKFKKPEKPSRAENVSTT 1021
            +   LE++  E      +E+             +  +Q +Q AK  + ++    E     
Sbjct: 69   RQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEA---- 124

Query: 1022 VSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQ-----RRLEEKAKAQE 1076
               +     +AK E     K +EE  ++AEE+ K +A A+ +++     ++ E +AKA+ 
Sbjct: 125  -KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183

Query: 1077 ALERKKRIAEKAQTRAALRAQKEAEQKEK---EREKRARKKEKRKAAAAEDTAI 1127
              + K +  E      A +A+  AE   K   E    A  + +RKA  AE   I
Sbjct: 184  EAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDI 237

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 8e-06
 Identities = 37/210 (17%), Positives = 83/210 (39%), Gaps = 24/210 (11%)

Query: 659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL 718
           R + E L  QI A +  +       + + + I  +     E   ++E        A E L
Sbjct: 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777

Query: 719 KSKRQEIDSVQSRINMMKNAIS------------VDDIDGSIRNMEHRIAHETLPLKEEK 766
                EI+ ++++I  +K  +             +  ++    N+  R+      +   +
Sbjct: 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837

Query: 767 QIIREI-KQLKQRREQISSSIGE-----------HDEVQLAFDQKDQIEEKMKFLRKEAD 814
           + + ++ +Q+++  E I S   E             E++   +++  +EE +  LR E +
Sbjct: 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897

Query: 815 SLRENVIKAEAATQAVKKLHREESEKLKRL 844
            L E + + E+    +++   E  EKL +L
Sbjct: 898 ELSEELRELESKRSELRRELEELREKLAQL 927

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 49.6 bits (118), Expect = 8e-06
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 5/150 (3%)

Query: 1030 EEAKEEVPKLTKEEEEMARKAEEKRKEEATAK---LREQRRLEEKAKAQEALER-KKRIA 1085
            EE +E+   L K ++    +A+ +    A AK   L +Q+R   +   +E   + K + A
Sbjct: 39   EENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAA 98

Query: 1086 EKAQTRAA-LRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVP 1144
              A+ +AA L  QK    +E   E++A  K K  AAA    A   +++   + E   E  
Sbjct: 99   AAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEE 158

Query: 1145 RTPELRDKPSTATKKPKKASQFTKQAKAKS 1174
             T + + K   A     KA+   KQ  A++
Sbjct: 159  ETDKEKAKAKAAAAAKAKAAALAKQKAAEA 188

Length = 430

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 49.4 bits (117), Expect = 2e-05
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 2/170 (1%)

Query: 1007 KKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEE-EMARKAEEKRKEEATAKLREQ 1065
            KK E   +AE V      R  E     E   K  +E + E ARKAE+ +K EA  K  E 
Sbjct: 1176 KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA 1235

Query: 1066 RRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDT 1125
            ++  E+AK  E     + I +  + R A  A+++A  K +E  K    K+  +   A++ 
Sbjct: 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295

Query: 1126 AITNEEEYTQSSETPLEVPR-TPELRDKPSTATKKPKKASQFTKQAKAKS 1174
                E++    ++   E  +   E + K   A KK   A +  ++AK  +
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 2e-05
 Identities = 68/350 (19%), Positives = 138/350 (39%), Gaps = 39/350 (11%)

Query: 828  QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN 887
            +  +KL R   E L RL       ++I  E  +  +SL++QA +K + + + K + ++  
Sbjct: 176  ETERKLERTR-ENLDRL-------EDILNELERQLKSLERQA-EKAERYKELKAELRELE 226

Query: 888  DLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDE 947
                    E L+     ++E + E     +E  +E   + ++    +L+ L       +E
Sbjct: 227  LALLVLRLEELR----EELEELQEELKEAEEELEEL-TAELQELEEKLEELRLEVSELEE 281

Query: 948  EAPLIRPFLNDRVAKNISLTQ-ISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKF 1006
            E       + +   +  +L   IS LE++K       +     ++   E+  Q ++    
Sbjct: 282  E-------IEELQKELYALANEISRLEQQKQILR---ERLANLERQLEELEAQLEE---- 327

Query: 1007 KKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAE--EKRKEEATAKLRE 1064
                  S+ + ++  ++  ++++EE KEE+  L  E EE+  + E  E R EE   +L  
Sbjct: 328  ----LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383

Query: 1065 QRRLEEKAKAQEALERKKRI-AEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAE 1123
             R    + + Q A    +    E    R   R ++  ++ E+  +K    +E        
Sbjct: 384  LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK---LEEAELKELQA 440

Query: 1124 DTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAK 1173
            +     EE      E         ELR++   A +    A +   Q +A+
Sbjct: 441  ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.9 bits (117), Expect = 2e-05
 Identities = 105/515 (20%), Positives = 221/515 (42%), Gaps = 62/515 (12%)

Query: 663  ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722
            EN+ E IK  + +++E  R  + I  ++  +R    E  EKLE  + +    +E ++   
Sbjct: 189  ENIEELIKEKEKELEEVLREINEISSELPELR----EELEKLEKEVKELEELKEEIEELE 244

Query: 723  QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782
            +E++S++          S   ++  IR +E RI      ++E ++ ++E+K+LK++ E+ 
Sbjct: 245  KELESLEG---------SKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY 295

Query: 783  SSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLK 842
                  ++E     D+  +IE+++  L +E + + E + + E   + +++L ++  E  K
Sbjct: 296  IKLSEFYEEYL---DELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEK 352

Query: 843  RLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLC 902
            RL        E R E Y+  ++ K++     +       +  +      +  +E ++   
Sbjct: 353  RL-----EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI 407

Query: 903  VNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAK 962
                 R+ EL     E +K           +    + GR L  +    L+  +  +   K
Sbjct: 408  SKITARIGELKKEIKELKK---AIEELKKAKGKCPVCGRELTEEHRKELLEEYTAE--LK 462

Query: 963  NIS--LTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVST 1020
             I   L +I   ER+  +++  ++     +    +++E  +Q+ + ++  K    E +  
Sbjct: 463  RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEK 522

Query: 1021 TVSGRDDEIEEAKEEVPKLTKE----EEEMARKAE-EKRKEEATAKLRE--------QRR 1067
                + +E E+ KE++ KL  E    ++E+ +  E +K+  E   KL E         + 
Sbjct: 523  ----KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE 578

Query: 1068 LEEKA-KAQEALERKKRIAEKAQTR--AALRAQKEAEQKEKEREKRARK-KEKRKAAAAE 1123
            LEE   ++ E LE + +  E           A+KE E++EKE +K   +  +  +  A  
Sbjct: 579  LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAET 638

Query: 1124 DTAIT-------------NEEEYTQSSETPLEVPR 1145
            +  +              +EEEY +  E  LE+ R
Sbjct: 639  EKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673

Length = 880

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 48.7 bits (117), Expect = 2e-05
 Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 1/135 (0%)

Query: 1043 EEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQ 1102
            EEE ARK E KR+ E  AK   +     +A+ +   E       +    AA  A+  A  
Sbjct: 39   EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARP 98

Query: 1103 KEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKK 1162
             E E  + A    +R  A          +   +  +             K     +  ++
Sbjct: 99   AEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRR 158

Query: 1163 A-SQFTKQAKAKSIP 1176
               +  KQ   + IP
Sbjct: 159  RRKKKKKQKPTEKIP 173

Length = 746

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 47.6 bits (113), Expect = 3e-05
 Identities = 30/97 (30%), Positives = 51/97 (52%)

Query: 1030 EEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQ 1089
            EEA+++     K++EE ARKA  ++K++A A   +      K KA    ++K   A KA 
Sbjct: 121  EEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAA 180

Query: 1090 TRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTA 1126
              A  +A+  A +K+ E E +A  ++ +  A A+  A
Sbjct: 181  EEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKA 217

Length = 387

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 47.5 bits (113), Expect = 3e-05
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 37/153 (24%)

Query: 1039 LTKE--EEEMARKAE-EKRKEEATAKLREQRRL-----------------------EEKA 1072
            LT E  E    ++A+  ++++E  A L   RR                           A
Sbjct: 279  LTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTA 338

Query: 1073 KAQEALERKKRIAEKAQTRAALRA---QKEAEQKEKEREKRARKKEKRKAAAAEDTAITN 1129
            +  EA  RKK IA+K   RAA R    +   E+       RAR+   +        A  N
Sbjct: 339  EKNEAKARKKEIAQK--RRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPN 396

Query: 1130 EEEYTQSSETPLEVPRTPELRDKPSTATKKPKK 1162
            E+  +++ E+    P+        +T T +P +
Sbjct: 397  EDTPSENEESKGSPPQV------EATTTAEPNR 423

Length = 429

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 47.7 bits (114), Expect = 4e-05
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 20/159 (12%)

Query: 1014 RAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEE--- 1070
            R E++   ++ R + IEE +E   +L +   E+  +AEEKR+  A A+   +   EE   
Sbjct: 517  RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAE 576

Query: 1071 ----KAKAQEALERKKRIAEKAQTRAALRAQ------KEAEQKEKEREKRARKKEKRK-- 1118
                 A+ +E +E  +RI       A    +      K     E   E+R R  EKR+  
Sbjct: 577  LNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERK 636

Query: 1119 ---AAAAEDTAITNEEEYTQSSETPLE--VPRTPELRDK 1152
                A  ++  I    E  + +E  LE    +  ELR++
Sbjct: 637  RELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREE 675

Length = 880

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 46.9 bits (112), Expect = 4e-05
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 16/84 (19%)

Query: 1030 EEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQ 1089
             E   +V K  +EEEE   KA E+ ++E   + +E+++ EE+      L  ++       
Sbjct: 255  PEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE------- 307

Query: 1090 TRAALRAQKEAEQKEKEREKRARK 1113
                   Q++ E  EKER+K+ARK
Sbjct: 308  -------QRKLE--EKERKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible proteins-interacting protein 1

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 20/118 (16%)

Query: 1028 EIEEAKEEVPKLTKEEEE--MARKAEEKRKEE----ATAKLREQRRLEEKAKAQEALERK 1081
             + +  EE  +  KE+E    AR+AE  +         A  R Q+R + + KA+ A ERK
Sbjct: 100  SLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKR-KREQKARAAKERK 158

Query: 1082 KRIAEKAQTRAALR------------AQKEAEQKEKERE-KRARKKEKRKAAAAEDTA 1126
            +R+  +A+                   QKE E+K+K +E KR  K+EKR AA     A
Sbjct: 159  ERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEKRMAALVAAAA 216

Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity. Length = 217

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 5e-05
 Identities = 65/409 (15%), Positives = 153/409 (37%), Gaps = 65/409 (15%)

Query: 698  KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAH 757
             +Y E+ E A        E+L+     ++ ++ ++                         
Sbjct: 168  SKYKERKEEAERKLERTEENLERLEDLLEELEKQLE------------------------ 203

Query: 758  ETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLR 817
                L+ + +     ++LK    ++  ++    +++    + +++EE++  L +E + L+
Sbjct: 204  ---KLERQAEKAERYQELKAELRELELALL-LAKLKELRKELEELEEELSRLEEELEELQ 259

Query: 818  ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW 877
            E + +AE   + +K    E  E+L+ L  +     E  +E       L+++  +      
Sbjct: 260  EELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELE 319

Query: 878  KYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKT 937
            + ++  ++      K   EAL+     ++E    L         E + + +      L+ 
Sbjct: 320  ELEERLEEL-----KEKIEALK----EELEERETL-----LEELEQLLAELEEAKEELEE 365

Query: 938  LDGRSLGPDEEAPLIRPFLNDRVAKNIS--LTQISALEREKTEQVVPIKSEKVDDKPFPE 995
                 L   EE       L + + + ++    +++ +  E  E    I+S +        
Sbjct: 366  KLSALLEELEE-------LFEALREELAELEAELAEIRNELEELKREIESLEE------R 412

Query: 996  VREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRK 1055
            +    +++   K+  K   AE     +     E+EE  EE+ +L ++ EE+  + +E  +
Sbjct: 413  LERLSERLEDLKEELKELEAE-----LEELQTELEELNEELEELEEQLEELRDRLKELER 467

Query: 1056 EEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKE 1104
            E A  +   QR  +E         R  R+  + +    +RA  EA +  
Sbjct: 468  ELAELQEELQRLEKE---LSSLEARLDRLEAEQRASQGVRAVLEALESG 513

Length = 1163

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 46.9 bits (112), Expect = 6e-05
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 1030 EEAKE--EVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEK 1087
            EEAK   E  +   E E+ AR  E + K+ A     E R  ++K     AL R K     
Sbjct: 449  EEAKARFEARQARLEREKAAR--EARHKKAA-----EARAAKDKDAVAAALARVKAKKAA 501

Query: 1088 AQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTA 1126
            A     ++A    +       + ARK + R   A +  A
Sbjct: 502  ATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAA 540

Length = 695

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 46.9 bits (112), Expect = 6e-05
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 23/181 (12%)

Query: 997  REQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEV-PKLTKEEEEMARKAEEKRK 1055
            RE+  + A+ KK  +   A++         D +  A   V  K     + +  KA  +  
Sbjct: 464  REKAAREARHKKAAEARAAKD--------KDAVAAALARVKAKKAAATQPIVIKAGARPD 515

Query: 1056 EEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAAL---RAQKEAEQKEKEREKRAR 1112
              A    RE R+ + +A+  E         +KA   AA+   +A+K A+Q      +   
Sbjct: 516  NSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEV 575

Query: 1113 KKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKA 1172
              +K   AAA   A   +     +S  P E             A   PKKA+     A+A
Sbjct: 576  DPKKAAVAAAIARAKAKKAAQQAASAEPEEQ-----------VAEVDPKKAAVAAAIARA 624

Query: 1173 K 1173
            K
Sbjct: 625  K 625

Length = 695

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 46.3 bits (110), Expect = 7e-05
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 5/142 (3%)

Query: 998  EQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEE 1057
            E+  + A  K+ +    A   +     + +   +      K    E +   +AE  +K  
Sbjct: 121  EEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAA 180

Query: 1058 ATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKR 1117
            A AK    ++ E +A A+ A E KK+   +A+ +AA  A+K+A  + K    +A  + K 
Sbjct: 181  AEAK----KKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKA 236

Query: 1118 KA-AAAEDTAITNEEEYTQSSE 1138
             A  AA   A         ++E
Sbjct: 237  AAEKAAAAKAAEKAAAAKAAAE 258

Length = 387

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 46.1 bits (110), Expect = 7e-05
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 16/84 (19%)

Query: 1001 DQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEE--EEMARKAEEKRKEEA 1058
            D++A  K   +  R          R++E E+      K  +EE  EE   K EEK+KEE 
Sbjct: 246  DKLANLKLSPEVLRK-----VDKTREEEEEKIL----KAAEEERQEEAQEKKEEKKKEER 296

Query: 1059 TAKLR-----EQRRLEEKAKAQEA 1077
             AKL      EQR+LEEK + ++A
Sbjct: 297  EAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 28/197 (14%), Positives = 91/197 (46%), Gaps = 17/197 (8%)

Query: 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722
           E L  Q++  +SK+DE       + + ++ ++   +    +LE   ++       L+   
Sbjct: 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378

Query: 723 QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI 782
           +++++++S++  ++  I+   ++  I  +E R+          +++    ++L+Q  E++
Sbjct: 379 EQLETLRSKVAQLELQIAS--LNNEIERLEARL----------ERLEDRRERLQQEIEEL 426

Query: 783 SSSIGEHD--EVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEK 840
              + E +  E+Q   ++ ++  E+   L++E + L E + +     +  ++       +
Sbjct: 427 LKKLEEAELKELQAELEELEEELEE---LQEELERLEEALEELREELEEAEQALDAAERE 483

Query: 841 LKRLLGQFKAADEIRQE 857
           L +L  +  + + +++ 
Sbjct: 484 LAQLQARLDSLERLQEN 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 46.1 bits (109), Expect = 8e-05
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 1028 EIEEAKEEVPKLTKEEEEMARKAEEKRK--EEATAKLREQRRLEEKAKAQEALERKKRIA 1085
               +A  E  KL K   E  +KAEE  K  EEA AK       ++     +A   K +  
Sbjct: 152  AKAKAAAEAAKL-KAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAE 210

Query: 1086 EKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTA 1126
             +A+ +A  +A+  AE+K    +K+A  K K   AAA   A
Sbjct: 211  AEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKA 251

Length = 387

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 46.1 bits (110), Expect = 8e-05
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 1043 EEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRA----ALRAQK 1098
            +EE  RK  +K KEEA  + R+++ L+   + Q   + ++   E+A+  A     L  Q 
Sbjct: 210  QEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQA 269

Query: 1099 EAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEY 1133
            E E+ E+E  ++ R K        E      EE  
Sbjct: 270  EDEELEQENAEKRRMKRLEHRRELEQQIEEKEERR 304

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 1/148 (0%)

Query: 1027 DEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAE 1086
             E ++A+E   K   E+E + +  +E+   +   K  E+   +   K ++A E   + A 
Sbjct: 84   KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAA 143

Query: 1087 KAQTRAALRAQKEAEQKEK-EREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPR 1145
             A+ +A   A++ A   +K   E + + + +    AA +     E E    +    +   
Sbjct: 144  AAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKA 203

Query: 1146 TPELRDKPSTATKKPKKASQFTKQAKAK 1173
              E + K +   KK   A      AKA 
Sbjct: 204  EAEAKKKAAAEAKKKAAAEAKAAAAKAA 231

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 9/163 (5%)

Query: 973  EREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEA 1032
            E+++ ++   +  E    +   + R +  +  + K  E+  +AE           + EE 
Sbjct: 78   EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQ 137

Query: 1033 --KEEVPKLTKEEEEMARKAEE----KRKEEATAKLREQRRLEE--KAKAQEALERKKRI 1084
              K    +  K E   A+ A E    K   EA  K  E  +  E  KAKA+ A  +KK  
Sbjct: 138  ARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAE 197

Query: 1085 AE-KAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTA 1126
            AE KA    A    +   + EK+ E  A +K   +   A   A
Sbjct: 198  AEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKA 240

Length = 387

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 2e-04
 Identities = 67/377 (17%), Positives = 149/377 (39%), Gaps = 43/377 (11%)

Query: 694  RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEH 753
            +   KE  E+L    +      E LKS + E+ S++  +  ++  +            E 
Sbjct: 666  KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLE-----------EL 714

Query: 754  RIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEA 813
                E L  +E   +  E++QL+ R E++   + E +E      + ++++E+++ L +E 
Sbjct: 715  ERQLEEL-KRELAALEEELEQLQSRLEELEEELEELEE------ELEELQERLEELEEEL 767

Query: 814  DSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIR---QEAYKHWQSLKKQAY 870
            +SL E + K +   + +++  +   E+L+ L  + + A+      +   +  +  +++  
Sbjct: 768  ESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827

Query: 871  DKNQHFWKYKDDTK-QANDLASKGDR--EALQHLCVNQVERVLELWNNNDEF-----RKE 922
             + +   +  ++ + + ++L  + +   + L+ L     E   E     DE       KE
Sbjct: 828  QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE 887

Query: 923  YVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKN-ISLTQISALEREKTEQVV 981
             +   +R     L  L        EE   +R  L +  AK      ++  LE E  E+  
Sbjct: 888  ELEEELRELESELAELK-------EEIEKLRERLEELEAKLERLEVELPELEEELEEEYE 940

Query: 982  PIKSEKVDDKPFPEVREQGDQIAKFKK--PEKPSRAENVSTTVSGRDDEIEEAKEEVPKL 1039
                 +++     E+    ++I              E V         + E+ +E   KL
Sbjct: 941  DTLETELER----EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996

Query: 1040 TKEEEEMARKAEEKRKE 1056
             +  EE+ ++  E+ KE
Sbjct: 997  LEVIEELDKEKRERFKE 1013

Length = 1163

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 45.4 bits (107), Expect = 2e-04
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 16/152 (10%)

Query: 1039 LTKEEEEMARKAEEKRKEEATAKLR-EQRRLEEKAKAQEAL----------ERKKRIAEK 1087
            L   ++E AR+A+E+ ++   AK   E  +LEE+ + +E            E K+R A  
Sbjct: 7    LEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAA 66

Query: 1088 AQTRAA-LRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRT 1146
            A+ +AA L  QK    +E   E++A+ K K  AAA    A   +    Q  E   EV   
Sbjct: 67   AKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAK----QKREGTEEVTEE 122

Query: 1147 PELRDKPSTATKKPKKASQFTKQAKAKSIPLP 1178
             +   K   A     KA+   KQ +  +  + 
Sbjct: 123  EKAAAKAKAAAAAKAKAAALAKQKREGTEEVT 154

Length = 430

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 1021 TVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKR-KEEATAKLREQRRLEEKAKAQEALE 1079
                RD +IEE K    +  +EE  +    EE+R K  A  + RE++R EE+ + +  L+
Sbjct: 18   VNKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQ 77

Query: 1080 RKKRIAEKAQTRAALRAQKEAEQK-------EKEREKRARKKEKRKAAAAEDTAITNEE 1131
             +    EK +        +E EQ        ++E E  A++K +++    E+    NEE
Sbjct: 78   EQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEE 136

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 45.2 bits (108), Expect = 2e-04
 Identities = 43/164 (26%), Positives = 85/164 (51%), Gaps = 10/164 (6%)

Query: 1027 DEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKA----KAQEALERKK 1082
            ++ E+ +EE  KL +E E+ A++A ++ K+EA   ++E R+L++      KA E +E +K
Sbjct: 555  EKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARK 614

Query: 1083 RIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYT-QSSETPL 1141
            R+ +  + +     +K+ ++K++E +     K        E  +I +++E   Q+    +
Sbjct: 615  RLNKANEKKEK--KKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIMKM 672

Query: 1142 EVPRTPELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRGKR 1185
            +VP + +L        KK KK    T + K +++ L L  RG R
Sbjct: 673  KVPLS-DLE--KIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMR 713

Length = 782

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 45.0 bits (106), Expect = 2e-04
 Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 964  ISLTQISALEREKTEQVVPIKSEKVDDKPF-PEVREQGDQIAKFKKPEKPSRAENVSTTV 1022
            IS  ++    RE  E+ V  + +  D K    +   +  Q  K +  +K   A+      
Sbjct: 177  ISDKKVVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKA 236

Query: 1023 SGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKK 1082
                D  ++ ++EV +  +E + + + A+    +E       Q+R  EKA  Q  +++  
Sbjct: 237  DFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKA--QIEIKKND 294

Query: 1083 RIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSS 1137
              A KA+   A   ++E++  EKE E +  + +K++   AED   T  +   Q +
Sbjct: 295  EEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPT 349

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 2e-04
 Identities = 30/177 (16%), Positives = 81/177 (45%), Gaps = 15/177 (8%)

Query: 663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722
           + L  +I+  + +++E+ + RD + ++   ++   ++   +LE    +    R+ LK  R
Sbjct: 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391

Query: 723 QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQ---------IIREIK 773
           ++++ ++  IN +K  +     +    + E    +  +   E K             EIK
Sbjct: 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451

Query: 774 QLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAV 830
           + + + EQ+++ + ++++      +   ++E+   + KE   L+  + +AEA  +A 
Sbjct: 452 KQEWKLEQLAADLSKYEQ------ELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 1061 KLREQRRLEEKA-KAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKA 1119
            K R   + E KA K + A +R+    E  +     RA   A  + +    +A+KK    A
Sbjct: 334  KTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDA 393

Query: 1120 AAAEDTAITNEEEYTQSSETPLEVPRTPELRDKPST 1155
            +  EDT   NEE      +        P  R+    
Sbjct: 394  SPNEDTPSENEESKGSPPQVEATTTAEPN-REPSQE 428

Length = 429

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 44.6 bits (106), Expect = 3e-04
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 1021 TVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEAL-- 1078
            T+    + +EE + E+  L +E EE+  + E  R E+         RLEE+ +  E L  
Sbjct: 469  TIEEDRERVEELEAELEDLEEEVEEVEERLE--RAEDLVEAEDRIERLEERREDLEELIA 526

Query: 1079 ERKKRIAEKAQTRAALRAQK-EAEQKEKEREKRARKKEKRKAAAAEDTAITNEE 1131
            ER++ I EK +    LR +  E E + +E+ + A + E+    A E+ A  N +
Sbjct: 527  ERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580

Length = 880

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 44.8 bits (107), Expect = 3e-04
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 24/152 (15%)

Query: 1029 IEEAKEEVPKLTKEEEEMARKAEEKRKE------EATAKLREQRRLEEKAKAQEALERKK 1082
            IEEAK+ + +  ++  E+    EE  +E      EA A L+E  +L+E+      LE KK
Sbjct: 504  IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEE------LEEKK 557

Query: 1083 RIAEKAQTRAALRAQKEAEQKEKEREKRARK--KEKRKAAAAEDTAITNEEEYTQSSETP 1140
               ++ + +    A+KEA+Q  KE +K A +  KE R+       ++    E  ++ +  
Sbjct: 558  EKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASV-KAHELIEARK-- 614

Query: 1141 LEVPRTPELRDKPSTATKKPKKASQFTKQAKA 1172
                    L        KK KK  +  ++ K 
Sbjct: 615  -------RLNKANEKKEKKKKKQKEKQEELKV 639

Length = 782

>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein

 Score = 44.8 bits (106), Expect = 3e-04
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 1016 ENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQ 1075
            E   T      +EI    E++  L KE E+     E+  KE    KL+++  LE++ +  
Sbjct: 500  EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKE--QEKLKKE--LEQEMEEL 555

Query: 1076 EALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQ 1135
            +  ER K++  + + + AL+A K+ E +   RE + +K  K K   + +  +  +E   +
Sbjct: 556  KERERNKKLELEKEAQEALKALKK-EVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQK 614

Query: 1136 SSETPLEV-PRTPELRDKPSTATKKPK 1161
              + P          + +     +K K
Sbjct: 615  IPQKPTNFQADKIGDKVRIRYFGQKGK 641

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.7 bits (105), Expect = 4e-04
 Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 11/193 (5%)

Query: 989  DDKPFPEVR--EQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEE-E 1045
            D K     R  E   +  + +K E   +AE        R  E     E+  K     + E
Sbjct: 1150 DAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAE 1209

Query: 1046 MARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEK 1105
              RKAEE RK E   K    ++ EE  K  E  ++    AE+ +    +R  +EA     
Sbjct: 1210 EERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKK----AEEERNNEEIRKFEEARMAHF 1265

Query: 1106 EREKRARK-KEKRKA---AAAEDTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPK 1161
             R + A K +E RKA     AE+    +E +  +  +   E  +  E   K   A KK +
Sbjct: 1266 ARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1325

Query: 1162 KASQFTKQAKAKS 1174
            +A +    AK K+
Sbjct: 1326 EAKKKADAAKKKA 1338

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 4e-04
 Identities = 35/218 (16%), Positives = 102/218 (46%), Gaps = 16/218 (7%)

Query: 661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISD--ERSAR 715
           ++E L+E+++  +  +    +  + ++ +++ + A     +E   KLE A++D   R + 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 716 ESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK-Q 774
             +   + E+  ++  ++  +    + +I+  +  +     +    ++E ++   ++K Q
Sbjct: 791 SRIPEIQAELSKLEEEVS--RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848

Query: 775 LKQRREQISSSIGEHDEVQLAFDQKD----QIEEKMKFLRKEADSLRENVIKAEAATQAV 830
           +K   ++I +  G+ +E++   ++ +     +E ++  L+KE D L   + + E   + +
Sbjct: 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908

Query: 831 KKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868
           +     + EK ++ L + KA  E  +E     +  K +
Sbjct: 909 E----AQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 44.6 bits (105), Expect = 4e-04
 Identities = 53/383 (13%), Positives = 105/383 (27%), Gaps = 43/383 (11%)

Query: 762  LKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVI 821
              +E  I    +     RE           +     QK  + +K++ L KE D L+    
Sbjct: 351  HSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410

Query: 822  KAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881
              +  T A + L  + +   K+   Q + A+          Q  K +     +     K+
Sbjct: 411  TIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKE 470

Query: 882  DTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGR 941
              +Q         +E                                     R K +   
Sbjct: 471  REQQLQTKEQIHLQET------------------------------------RKKAVVLA 494

Query: 942  SLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGD 1001
             L   E      P     +  N +   I              ++    +    +V  Q  
Sbjct: 495  RL--LELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLT 552

Query: 1002 QIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAK 1061
               K +   K  + + +  + S        +KE++P L      +    E+  + E    
Sbjct: 553  SERKQRASLK-EQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA 611

Query: 1062 LREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQ----KEKEREKRARKKEKR 1117
              +   L +    Q+  + +  + + +Q  A       A Q    +E+ RE     +   
Sbjct: 612  CEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLP 671

Query: 1118 KAAAAEDTAITNEEEYTQSSETP 1140
            K   A       + +  +   T 
Sbjct: 672  KELLASRQLALQKMQSEKEQLTY 694

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 44.0 bits (104), Expect = 5e-04
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 1013 SRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKA 1072
            ++ + +S  +    DE+E A+EE      E E  AR    +R+ +A     E  +     
Sbjct: 276  TQYDQLSRDLGRARDELETAREE------ERELDARTEALEREADALRTRLEALQGSPAY 329

Query: 1073 KAQEALERKKRIAEKAQTRAALRAQ--KEAEQKEKEREKRARKKEKRKAAAAEDTAITNE 1130
            +  E LER +  AE  Q  AA   Q  +EAE + +E  +R  ++  R   A  +     E
Sbjct: 330  QDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAARE 389

Query: 1131 E 1131
            +
Sbjct: 390  Q 390

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 43.4 bits (103), Expect = 6e-04
 Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 1028 EIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEK 1087
            E  E +  + +  +E E+  ++  E+R +E         R++E+ +A+   +R+K+   +
Sbjct: 68   ERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLR 127

Query: 1088 AQTRAALRAQKEAEQKEKEREKR--------ARKKEKRKAAAAEDTAITNEE 1131
             +       + E +++EKERE+          R+K +R+     +     EE
Sbjct: 128  EEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEE 179

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 43.0 bits (101), Expect = 7e-04
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 15/158 (9%)

Query: 1025 RDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRI 1084
            R  + E+  EE+      E+E  ++ E++R +       EQ++  E+A+ Q  LE+K+  
Sbjct: 81   RKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQ-----EQQKQAEEAEKQAQLEQKQ-- 133

Query: 1085 AEKAQTRAALRAQKEAEQ---KEKEREKRAR-----KKEKRKAAAAEDTAITNEEEYTQS 1136
             E+   +AA   +K+AE    K      + +     KK+  +AA A + A    E     
Sbjct: 134  QEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAK 193

Query: 1137 SETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAKS 1174
             +   E     E     + A  K +K ++   + KA +
Sbjct: 194  KKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAA 231

Length = 387

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 8e-04
 Identities = 34/223 (15%), Positives = 98/223 (43%), Gaps = 16/223 (7%)

Query: 665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQE 724
           +  ++     ++ + +R    I  +I+ +    ++  E+LE    D  S  + +++ + E
Sbjct: 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759

Query: 725 IDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS 784
           +  +++RI  ++  +    ++ ++ ++E R++H  +P  + +  + ++++   R E    
Sbjct: 760 LKELEARIEELEEDLH--KLEEALNDLEARLSHSRIPEIQAE--LSKLEEEVSRIEARLR 815

Query: 785 SIG------------EHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKK 832
            I                E+Q   +Q+  ++E++K + KE ++L     + E   + ++ 
Sbjct: 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875

Query: 833 LHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQH 875
             R+   +L  L  +    +   +E  +  + L+ Q   K + 
Sbjct: 876 ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572)

 Score = 42.8 bits (101), Expect = 8e-04
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 11/163 (6%)

Query: 1030 EEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKA-----QEALERKKRI 1084
            +  +E+  ++ KE EE       K+ E  TA      + E +        +E   R+  +
Sbjct: 112  KLDEEQEERVEKEREEELAGDAMKKLENRTA----DSKREMEVLERLEELKELQSRRADV 167

Query: 1085 AEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSE--TPLE 1142
               +   A  R +K+ E++E+E ++   K         ED    ++E+     E      
Sbjct: 168  DVNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTP 227

Query: 1143 VPRTPELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRGKR 1185
             P++        T+  K   A +    + +K+          R
Sbjct: 228  SPKSGSSSPAKPTSILKKSAAKRSEAPSSSKAKKNSRGIPKPR 270

Family of eukaryotic proteins with undetermined function. Length = 321

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.2 bits (103), Expect = 8e-04
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 13/101 (12%)

Query: 1029 IEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQR----RLEEK--------AKAQE 1076
            +EEAK+E   + KE    A++   K + E   +LRE+R    +LE++         +  E
Sbjct: 44   LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103

Query: 1077 ALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKR 1117
             LE+++   EK + +   + Q+E E+KE+E E+   ++ + 
Sbjct: 104  LLEKREEELEK-KEKELEQKQQELEKKEEELEELIEEQLQE 143

Length = 520

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 43.0 bits (101), Expect = 9e-04
 Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 33/184 (17%)

Query: 686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDID 745
           ++ ++Q  R +  E   ++    S ERS +  L   ++E D +Q+++N M +A       
Sbjct: 418 LQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSA------- 470

Query: 746 GSIRNMEHRIAHETLPLKEEKQIIREI-KQLKQRREQISSSIGEHDEVQLAFDQKDQIEE 804
                            +++KQ ++ + K+LK   +   ++     E QLA ++K + EE
Sbjct: 471 ----------------KQKDKQSMQSMEKRLKSEADSRVNA-----EKQLAEEKKRKKEE 509

Query: 805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQS 864
           +    R  A +       AE+  QA + L  E    +K+L    K  +E  +   K  Q 
Sbjct: 510 EETAARAAAQAAASREECAESLKQAKQDLEME----IKKLEHDLKLKEEECRMLEKEAQE 565

Query: 865 LKKQ 868
           L+K 
Sbjct: 566 LRKY 569

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 69/376 (18%), Positives = 152/376 (40%), Gaps = 44/376 (11%)

Query: 762  LKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVI 821
            +KE K+ I  +++  +R E I   I E ++      + +++  ++  +  E   LRE + 
Sbjct: 171  IKEIKRRIERLEKFIKRTENIEELIKEKEK------ELEEVLREINEISSELPELREELE 224

Query: 822  KAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD 881
            K E   + +++  +EE E+L++ L   +              S +K      +   + ++
Sbjct: 225  KLEKEVKELEE-LKEEIEELEKELESLE-------------GSKRKLEEKIRELEERIEE 270

Query: 882  DTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGR 941
              K+  +L  K          + +++   E +    EF +EY        LR ++    R
Sbjct: 271  LKKEIEELEEKVKE-------LKELKEKAEEYIKLSEFYEEY-----LDELREIEKRLSR 318

Query: 942  SLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGD 1001
                +EE   I   + +   K   L ++    +E  +++  ++      + + E + + +
Sbjct: 319  L---EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEE---RHELYEEAKAKKE 372

Query: 1002 QIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMAR--KAEEKRKEEAT 1059
            ++ + KK       E +   +    +E+E+AKEE+ +   +        K E K  ++A 
Sbjct: 373  ELERLKKRLTGLTPEKLEKEL----EELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428

Query: 1060 AKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKA 1119
             +L++ +        +   E +K + E+         ++  E +EKER+ R   +E  K 
Sbjct: 429  EELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKV 488

Query: 1120 AAAEDTAITNEEEYTQ 1135
               E   I  +E   Q
Sbjct: 489  LKKESELIKLKELAEQ 504

Length = 880

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 1029 IEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKA 1088
              E   E  ++ K       +A+ ++KE A     ++R  E +   +   ER   +A   
Sbjct: 322  APELHAENAEIKKTRTAEKNEAKARKKEIAQ----KRRAAEREINREARQERAAAMARAR 377

Query: 1089 QTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSET 1139
              RAA++A+K+        E    + E+ K +  +  A T  E   + S+ 
Sbjct: 378  ARRAAVKAKKKGLIDASPNEDTPSENEESKGSPPQVEATTTAEPNREPSQE 428

Length = 429

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 42.7 bits (100), Expect = 0.001
 Identities = 27/179 (15%), Positives = 64/179 (35%), Gaps = 20/179 (11%)

Query: 1018 VSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEA 1077
            V       +  +   ++      +E +E A++A++ ++E    ++   +  ++   AQ+ 
Sbjct: 183  VEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDN 242

Query: 1078 LERKKRIAEKAQT------------------RAALRAQKEAEQKEKEREKRARKKEKRKA 1119
             ++++    + Q                   + A   ++E E+ + E +K   +  K K 
Sbjct: 243  ADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKD 302

Query: 1120 AAAEDTA--ITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKAKSIP 1176
              A D        E+  +  E   +  R P   D   T  +   + +   + A   S P
Sbjct: 303  HKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAIDSSNP 361

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 42.8 bits (101), Expect = 0.001
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 1023 SGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQ--EALER 1080
            S  +   E  + E   + K      RK + +R +E   K  E+   EEK   +    L R
Sbjct: 253  SDDESAWEGFESEYEPINKPVR-PKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLAR 311

Query: 1081 KKRIAEKAQTRAALRAQKEAEQKEKEREKRARKK 1114
             K IA++   +   RA+K+ ++KE+  +K+ +++
Sbjct: 312  LKEIAKEVAQKEKARARKKEQRKERGEKKKLKRR 345

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 14/167 (8%)

Query: 1022 VSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERK 1081
               R + I+  K  + +L     E+A +  E      + +  +Q +L +  + ++    +
Sbjct: 156  NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLL-SEQRAQQAKLAQLLEERKKTLAQ 214

Query: 1082 --KRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSET 1139
                ++   +    LRA +   + E    + A  K +  AAAAE  A             
Sbjct: 215  LNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAA------- 267

Query: 1140 PLEVPRTPELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRGKRR 1186
              E  RT E      TA +K   +S     A    +  P+  R  RR
Sbjct: 268  --EAKRTGE--TYKPTAPEKMLISSTGGFGALRGQLAWPVTGRILRR 310

Length = 420

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 1026 DDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQ--RRLEEKAKAQEALERKKR 1083
             +E+++  +++ +L  EEEE   +A ++++EE  +KL E+   RLE K  A E   R + 
Sbjct: 169  KEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEF 228

Query: 1084 IAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAE 1123
              EK + R     +   E + +      + K +    A E
Sbjct: 229  EREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIE 268

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 990  DKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARK 1049
            D+ +P+  E+ D+    +   +  RA+  +   +     ++ AK+  P++ K  +E  ++
Sbjct: 183  DEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRI-KSFKEQEKE 241

Query: 1050 AEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREK 1109
             ++ RK E  A  R +     K KA+   + +      A   A  +  KE  +K  + EK
Sbjct: 242  MKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEK 301

Query: 1110 RARKKEKRKA 1119
            +A K   + A
Sbjct: 302  KAIKNAAKDA 311

Length = 379

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 1004 AKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLR 1063
                 P               R +           L +E E+ AR A+E +   A A  R
Sbjct: 170  VDISHPALFVPKAEALAAAPARAE----------TLAREAEDAARAADEAKTA-AAAAAR 218

Query: 1064 EQRRLEEKAKAQEALERKKRIAEKAQTRA--ALRAQKEAEQKEKEREKRARKKEKRKAAA 1121
            E   L     +   LER K  A+    RA  AL A K  E K +  E++ +  ++   AA
Sbjct: 219  EAAPL---KASLRKLERAKARADAELKRADKALAAAKTDEAKARAEERQQKAAQQAAEAA 275

Query: 1122 AE-DTAITNEE 1131
             + DTA  + E
Sbjct: 276  TQLDTAKADAE 286

Length = 508

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 51/407 (12%), Positives = 149/407 (36%), Gaps = 59/407 (14%)

Query: 685  AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDI 744
             + +++  + A      EKLE  +   ++   SL+   +E+      +            
Sbjct: 671  ELEEELAELEAQL----EKLEEELKSLKNELRSLEDLLEELRRQLEELER---------- 716

Query: 745  DGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEE 804
                              +E   +  E++QL+ R E++   + E +E      + ++++E
Sbjct: 717  ------------QLEELKRELAALEEELEQLQSRLEELEEELEELEE------ELEELQE 758

Query: 805  KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIR---QEAYKH 861
            +++ L +E +SL E + K +   + +++  +   E+L+ L  + + A+      +   + 
Sbjct: 759  RLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELES 818

Query: 862  WQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRK 921
             +  +++   + +   +  ++ ++          + L+       + + EL    +E   
Sbjct: 819  LEQRRERLEQEIEELEEEIEELEE--------KLDELEEELEELEKELEELKEELEELEA 870

Query: 922  EY--VNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKN--ISLTQISALEREKT 977
            E   +   ++      + L+            +R   ++       I   +    E E  
Sbjct: 871  EKEELEDELKELEEEKEELEEE----------LRELESELAELKEEIEKLRERLEELEAK 920

Query: 978  EQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVP 1037
             + + ++  +++++   E  +  +   + +        E +        +E EE +E   
Sbjct: 921  LERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYE 980

Query: 1038 KLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRI 1084
            +L  + E+   +  +++  E   +L +++R   K    +  E    I
Sbjct: 981  ELKSQRED--LEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEI 1025

Length = 1163

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 14/129 (10%)

Query: 1047 ARKAEEKRKEEATAKLREQRRLEEKAKAQEALER--KKRIAEKAQTRAALRAQKEAEQKE 1104
            A++AEE+RK++   +  E +  +++A  QE L++  K+R+A + Q + A  A K+A  K+
Sbjct: 74   AKRAEEQRKKKEQQQAEELQ--QKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQ 131

Query: 1105 KEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKAS 1164
            K+ E+ A K      A AE  A        +++              K + A    K A+
Sbjct: 132  KQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAE----------AKKKAEAEAAKKAAA 181

Query: 1165 QFTKQAKAK 1173
            +  K+A+A+
Sbjct: 182  EAKKKAEAE 190

Length = 387

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 1044 EEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQK 1103
             E+ RK ++ R+EE    L+       + + QE  + KK   +K +  A L      EQ+
Sbjct: 255  PEVLRKVDKTREEEEEKILKAA-----EEERQEEAQEKKEEKKKEEREAKLAKLSPEEQR 309

Query: 1104 EKEREKRARKKEKRK 1118
            + E   + RKK+ RK
Sbjct: 310  KLEE--KERKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.1 bits (99), Expect = 0.002
 Identities = 25/119 (21%), Positives = 45/119 (37%)

Query: 1014 RAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAK 1073
            +AE ++      +    E + +  K  +  E      E +++ E   + R       + +
Sbjct: 291  QAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQ 350

Query: 1074 AQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEE 1132
            AQE  +    IAE    +A    +   E +E ER ++A      +AA  E   I    E
Sbjct: 351  AQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAE 409

Length = 548

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 79/495 (15%), Positives = 168/495 (33%), Gaps = 62/495 (12%)

Query: 662  DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSK 721
            D  +  + +     V+       A+R  IQ +        EKL+       S    L+  
Sbjct: 214  DGTVPPKSRLNPQDVEHWIADIQALRA-IQKVAPEI----EKLQEDFEQLLSLELRLQHL 268

Query: 722  RQEIDSVQSRINMMKNAI--SVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE-IKQLKQR 778
              E+ + + R+   +     + + +   +R +E ++      L +E       +   +  
Sbjct: 269  HGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSE 328

Query: 779  REQISSSIGEHDE-----VQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAAT----QA 829
             E +    G  ++     +Q   DQ   I  +++ +    D+L       +       Q 
Sbjct: 329  LELLEDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQK 388

Query: 830  VKKLHREESEKLK-RLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND 888
            +K+    + EK   RL    +  D  +    +  Q+L+ Q   + Q      +  ++  +
Sbjct: 389  IKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQL--RQQLEAGKLEFNEEEYE 446

Query: 889  LASKGDREALQHLCVNQV----ERVLELWNNNDEFRK-----EYVNSNIRSTLRRLKTLD 939
            L  +  R   +   ++      E + +L  N++   K     E   +N+      L+ L 
Sbjct: 447  LELRLGRLKQR---LDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLR 503

Query: 940  GRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQ 999
             R     E        L            +  LE + + Q   +     ++ P       
Sbjct: 504  KRRDEALEALQRAERRLLQLRQ------ALDELELQLSPQAGSLLHFLRNEAP-----GW 552

Query: 1000 GDQIAKFKKPEKPSRAENVSTTVSGRDDE------IEEAKEEVPKLTKEEEEMARK---- 1049
             + I K   PE   R +     V G D +      ++  + +VP     E E+  +    
Sbjct: 553  EESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQA 612

Query: 1050 -----AEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKE 1104
                 +   ++++A  +L +     E+ K  EA           Q R  L+  +  +Q  
Sbjct: 613  EEALQSAVAKQKQAEEQLVQANAELEEQKRAEAE----ARTALKQARLDLQRLQNEQQSL 668

Query: 1105 KEREKRARKKEKRKA 1119
            K++ + A  + K++A
Sbjct: 669  KDKLELAIAERKQQA 683

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase

 Score = 42.2 bits (99), Expect = 0.002
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 1029 IEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKA 1088
            +EE + E+ KL KEE E  R+AEE+R+ E      E  R + KA+ ++  E+ + + +KA
Sbjct: 251  LEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKKA 310

Length = 1036

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 41.5 bits (98), Expect = 0.003
 Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 14/130 (10%)

Query: 1004 AKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLR 1063
            AK KK  + +        V  +   +  A              A+KA ++       + +
Sbjct: 557  AKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAK---------AKKAAQQAASAEPEE-Q 606

Query: 1064 EQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEK-RKAAAA 1122
                  +KA    A+ R K  A+KA+   A    +E     K     A  + K RKAA  
Sbjct: 607  VAEVDPKKAAVAAAIARAK--AKKAEQ-QANAEPEEPVDPRKAAVAAAIARAKARKAAQQ 663

Query: 1123 EDTAITNEEE 1132
            +  A   E E
Sbjct: 664  QANAEPEEAE 673

Length = 695

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 1020 TTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALE 1079
              +    +++ E    + +L +E E+ A +AE   KE    KL+E+  LEEK +  +  E
Sbjct: 509  KLIGEDKEKLNELIASLEELERELEQKAEEAEALLKE--AEKLKEE--LEEKKEKLQEEE 564

Query: 1080 RKKRIAEKAQTRAALR-AQKEAEQKEKE-REKRARKKEKRKAAAAED 1124
             K     + + + A++ A+KEA++  KE R+ +       KA    +
Sbjct: 565  DKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIE 611

Length = 782

>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN

 Score = 41.2 bits (96), Expect = 0.003
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 12/170 (7%)

Query: 1008 KPEKPSRAENV---STTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLRE 1064
              + P + E        +  R+  I + +E       EE       + +  E+  A +R 
Sbjct: 72   AADLPPKPEERWSYIEELEAREVLINDPEEPSNGGGVEESAQLTAEQRQLLEQMQADMRA 131

Query: 1065 QRR--LEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAA 1122
              +      ++   A+E +K+ AEK   +A      EA++   E EK A K ++ K    
Sbjct: 132  AEKVLATAPSEQTVAVEARKQTAEKKPQKA---RTAEAQKTPVETEKIASKVKEAKQK-- 186

Query: 1123 EDTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAKA 1172
               A+  +   TQS+  P+E     +  DK     K+ K       Q  A
Sbjct: 187  -QKALPKQTAETQSNSKPIETAPKADKADKTKPKPKE-KAERAAALQCGA 234

FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis [Cellular processes, Cell division]. Length = 298

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 41.6 bits (98), Expect = 0.003
 Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 25/168 (14%)

Query: 972  LEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSR-AENVSTT----VSGRD 1026
             ER+K +Q+     +K++     E+++  +++ K +   +    A          +    
Sbjct: 275  FERDKIKQLASELEKKLE----KELKKLENKLEKQEDELEELEKAAEELRQKGELLYANL 330

Query: 1027 DEIEEAKEEVPKLT-KEEEEMARKAEEKRKEEATA--------KLRE-----QRRLEEKA 1072
              IEE  + V        EE+  + ++ +     A        KL+       R+L E  
Sbjct: 331  QLIEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELK 390

Query: 1073 KAQEALERKKRIAEKAQTRAALRAQKE--AEQKEKEREKRARKKEKRK 1118
            +A    E  K   EKA+ + A+   +E   E+   + +K+ RKK++  
Sbjct: 391  EAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWF 438

Length = 564

>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase

 Score = 41.8 bits (98), Expect = 0.003
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 1069 EEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAIT 1128
            E+K   +E LERKK+  EKA      + ++  + K  ++E +A+ + +     A D    
Sbjct: 9    EKKILTEEELERKKKKEEKA------KEKELKKLKAAQKEAKAKLQAQ----QASDGTNV 58

Query: 1129 NEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQ 1169
             ++   +S +  +E     +  D  +   +K + +SQ  KQ
Sbjct: 59   PKKSEKKSRKRDVEDENPEDFIDPDTPFGQKKRLSSQMAKQ 99

Length = 1066

>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown]

 Score = 41.5 bits (97), Expect = 0.003
 Identities = 28/165 (16%), Positives = 64/165 (38%), Gaps = 13/165 (7%)

Query: 956  LNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRA 1015
             N   A N    +   L  ++  + +        +K      E    +AK K  +    A
Sbjct: 400  ANQEGALNAREDEAEVLSTQEERRDILKNLLADAEKRTARQEELNKALAKAKILQADKAA 459

Query: 1016 ENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQ 1075
            +     +  R              ++ +   A +++E+      A L  Q+++ + + A+
Sbjct: 460  KAYQEDILQR-----------EAQSRGKTAAAERSQEQMTAALKALLAFQQQIADLSGAK 508

Query: 1076 EALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAA 1120
            E    +K +  KA+ + AL   KE  ++ + +E++A  + K++  
Sbjct: 509  EKASDQKSLLWKAEEQYAL--LKEEAKQRQLQEQKALLEHKKETL 551

Length = 833

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.004
 Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 4/191 (2%)

Query: 973  EREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEE- 1031
              E  E++  +K +    K   E RE   +  +    E     E +   +S   +E+EE 
Sbjct: 318  LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377

Query: 1032 ---AKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKA 1088
                +EE+ +L  E  E+  + EE ++E  + + R +R  E     +E L+  +   E+ 
Sbjct: 378  FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL 437

Query: 1089 QTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPE 1148
            QT      ++  E +E+  E R R KE  +  A     +   E+   S E  L+     +
Sbjct: 438  QTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQ 497

Query: 1149 LRDKPSTATKK 1159
               +   A  +
Sbjct: 498  RASQGVRAVLE 508

Length = 1163

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 1043 EEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQ 1102
            EE+  +K +++ +E    +  EQ RL++  K + A + +K+ AE+A  + A   QK+AE+
Sbjct: 78   EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAA-KQAALKQKQAEE 136

Query: 1103 KEKEREKRARKKEKRKAAAAEDTAITNEEE 1132
               +    A+ K + +A  A   A     E
Sbjct: 137  AAAKAAAAAKAKAEAEAKRAAAAAKKAAAE 166

Length = 387

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 41.2 bits (97), Expect = 0.004
 Identities = 76/493 (15%), Positives = 180/493 (36%), Gaps = 35/493 (7%)

Query: 662  DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD----ERSARES 717
             E      +  ++  D+   +RD +  ++    A       +LE         E +  E 
Sbjct: 287  QEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQ 346

Query: 718  LKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQ 777
            L++   ++ S++S +  ++  +  D + G  ++++    +E L  K ++Q+ R++++  +
Sbjct: 347  LQADLDQLPSIRSELEEVEARL--DALTGKHQDVQR--KYERLKQKIKEQLERDLEKNNE 402

Query: 778  RREQISSSIG------EHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVK 831
            R   I           E D   L    + Q+E       +E   L   + + +    +  
Sbjct: 403  RLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSA- 461

Query: 832  KLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND--L 889
                EE E+L+      + A E +++A  + + L+ +     +   +  +  ++A    L
Sbjct: 462  TATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLL 521

Query: 890  ASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEA 949
              +   + L+     Q   +L    N     +E +   I   L     LD + +   +  
Sbjct: 522  QLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSD 581

Query: 950  PLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKP 1009
             L           ++ L ++   +    E  +  + ++ ++     V +Q     +  + 
Sbjct: 582  TLY--------GVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQA 633

Query: 1010 EKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLE 1069
                  E      +     +++A+ ++ +L  E++ +  K E    E       + R+L+
Sbjct: 634  NA--ELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLD 691

Query: 1070 EKAKA-----QEALERKKRIAEKAQT-RAALRAQKEAEQKEKEREKRARKKEKRKAAAAE 1123
             + K      Q  LE  K    + +T R A     E E   +  +  A  +  R  A A 
Sbjct: 692  AQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKAR 751

Query: 1124 DTAITNEEEYTQS 1136
               +  +++Y + 
Sbjct: 752  LKEL--KKQYDRE 762

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 41.0 bits (96), Expect = 0.004
 Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 9/175 (5%)

Query: 1023 SGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKK 1082
            SG+++E E+ + +  K  K+E+      + K KEEA  K   + + +EK K  E    ++
Sbjct: 102  SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDRE 161

Query: 1083 RIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAE-------DTAITNEEEYTQ 1135
               ++ + RA  R +K  ++K   ++K   ++EK++ AA E       +  +  E E  +
Sbjct: 162  EEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEE 221

Query: 1136 SSETPLEVPRTP--ELRDKPSTATKKPKKASQFTKQAKAKSIPLPLRNRGKRRVP 1188
                  E   +P  E   + S+   +   +S               R   KR   
Sbjct: 222  DDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTET 276

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional

 Score = 41.0 bits (96), Expect = 0.004
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 16/82 (19%)

Query: 1026 DDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKL-REQRRLEEKAKAQEALERKKRI 1084
            D E+  A+E   KL +E+ E        RK+ A  KL RE++  EE AK +EA+E     
Sbjct: 2    DFELRRARE---KLEREQRE--------RKQRAKLKLERERKAKEEAAKQREAIE----A 46

Query: 1085 AEKAQTRAALRAQKEAEQKEKE 1106
            A++++   A+ AQ +A+Q+ +E
Sbjct: 47   AQRSRRLDAIEAQIKADQQMQE 68

Length = 567

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1222
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	99.75
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.97
PHA02562	562	46 endonuclease subunit; Provisional	98.37
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.33
PRK03918	880	chromosome segregation protein; Provisional	98.3
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.27
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.2
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.2
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.2
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.18
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.18
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.17
PHA02562	562	46 endonuclease subunit; Provisional	98.14
PRK02224	880	chromosome segregation protein; Provisional	98.14
PRK11637	428	AmiB activator; Provisional	98.07
PRK02224	880	chromosome segregation protein; Provisional	98.03
PRK03918	880	chromosome segregation protein; Provisional	98.03
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.02
PRK11637	428	AmiB activator; Provisional	97.96
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.92
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.86
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.84
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.82
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.79
PTZ00121	2084	MAEBL; Provisional	97.67
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.63
PRK01156	895	chromosome segregation protein; Provisional	97.62
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.6
PRK01156	895	chromosome segregation protein; Provisional	97.59
PRK04778	569	septation ring formation regulator EzrA; Provision	97.58
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.54
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.5
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.5
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.5
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.48
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.46
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.41
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.35
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.34
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.34
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.3
KOG0979	1072	consensus Structural maintenance of chromosome pro	97.27
PRK04778	569	septation ring formation regulator EzrA; Provision	97.26
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.26
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.25
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.15
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.14
PTZ00121	2084	MAEBL; Provisional	97.1
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.03
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.01
PRK04863	1486	mukB cell division protein MukB; Provisional	96.99
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.93
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.89
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.89
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.88
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.86
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.85
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.84
PRK09039	343	hypothetical protein; Validated	96.82
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.82
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.81
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.81
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.81
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.78
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.72
COG5185	622	HEC1 Protein involved in chromosome segregation, i	96.68
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.68
COG4372	499	Uncharacterized protein conserved in bacteria with	96.65
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.62
PRK04863	1486	mukB cell division protein MukB; Provisional	96.61
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.6
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.55
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.55
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.54
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.54
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.5
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.42
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	96.39
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.39
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.39
PRK09039	343	hypothetical protein; Validated	96.36
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.34
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.32
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.3
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.29
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.25
KOG0979	1072	consensus Structural maintenance of chromosome pro	96.13
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.11
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.1
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.05
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.93
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.91
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.9
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.82
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.72
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.59
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.58
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	95.58
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.57
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.5
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.4
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.36
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.27
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.06
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.83
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	94.77
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	94.76
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	94.73
PRK10869	553	recombination and repair protein; Provisional	94.72
PF13514	1111	AAA_27: AAA domain	94.66
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	94.64
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.6
KOG0018	1141	consensus Structural maintenance of chromosome pro	94.55
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.44
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.31
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.27
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	93.97
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	93.89
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	93.88
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.7
KOG0963	629	consensus Transcription factor/CCAAT displacement	93.66
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.55
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	93.46
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	93.41
PF13166	712	AAA_13: AAA domain	93.37
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	93.35
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.34
PF11600	216	CAF-1_p150: Chromatin assembly factor 1 complex p1	93.3
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	93.15
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.14
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	93.1
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.03
PF13166	712	AAA_13: AAA domain	93.0
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.99
PRK10929	1109	putative mechanosensitive channel protein; Provisi	92.96
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	92.88
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	92.79
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.7
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	92.63
KOG2072	988	consensus Translation initiation factor 3, subunit	92.55
PRK11281	1113	hypothetical protein; Provisional	92.47
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.46
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	92.33
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	92.29
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	92.24
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.14
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.12
PRK10869	553	recombination and repair protein; Provisional	91.75
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	91.7
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.7
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	91.61
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	91.49
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.42
PRK00247	429	putative inner membrane protein translocase compon	91.35
PRK10884	206	SH3 domain-containing protein; Provisional	91.33
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	91.22
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	91.1
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.06
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	90.83
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	90.78
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	90.58
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	90.5
PF03999	619	MAP65_ASE1: Microtubule associated protein (MAP65/	90.27
KOG1003	205	consensus Actin filament-coating protein tropomyos	89.98
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	89.91
cd08915	342	V_Alix_like Protein-interacting V-domain of mammal	89.72
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	89.7
KOG2751	447	consensus Beclin-like protein [Signal transduction	89.66
KOG1937	521	consensus Uncharacterized conserved protein [Funct	89.64
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	89.64
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	89.55
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	89.5
PF14662	193	CCDC155: Coiled-coil region of CCDC155	89.29
KOG4302	660	consensus Microtubule-associated protein essential	89.17
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	89.06
PF13949	296	ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI	88.72
KOG4302	660	consensus Microtubule-associated protein essential	88.61
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	88.57
PRK10929	1109	putative mechanosensitive channel protein; Provisi	88.57
PF13514	1111	AAA_27: AAA domain	88.54
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	88.44
COG4477	570	EzrA Negative regulator of septation ring formatio	88.27
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	88.15
PRK10361	475	DNA recombination protein RmuC; Provisional	88.14
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	88.04
COG3096	1480	MukB Uncharacterized protein involved in chromosom	87.81
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	87.58
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.55
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	87.45
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	87.2
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	86.88
PRK09510	387	tolA cell envelope integrity inner membrane protei	86.87
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	86.49
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	86.24
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	86.16
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	86.07
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	86.04
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	85.83
COG4372	499	Uncharacterized protein conserved in bacteria with	85.76
KOG1962	216	consensus B-cell receptor-associated protein and r	85.56
PRK00247	429	putative inner membrane protein translocase compon	85.4
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	85.39
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	85.21
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	85.0
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	84.68
PLN02939	977	transferase, transferring glycosyl groups	84.44
PRK15422	79	septal ring assembly protein ZapB; Provisional	84.24
COG4026	290	Uncharacterized protein containing TOPRIM domain,	84.16
PF13800	96	Sigma_reg_N: Sigma factor regulator N-terminal	83.95
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	83.76
PF07946	321	DUF1682: Protein of unknown function (DUF1682); In	83.73
KOG1962	216	consensus B-cell receptor-associated protein and r	83.59
COG4717	984	Uncharacterized conserved protein [Function unknow	83.56
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	83.49
KOG3054	299	consensus Uncharacterized conserved protein [Funct	83.34
cd09234	337	V_HD-PTP_like Protein-interacting V-domain of mamm	83.32
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	83.28
PTZ00266	1021	NIMA-related protein kinase; Provisional	82.96
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	82.89
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	82.74
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	82.68
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	82.63
KOG0288	459	consensus WD40 repeat protein TipD [General functi	82.08
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	82.0
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	81.93
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	81.91
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	81.83
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	81.74
PTZ00266	1021	NIMA-related protein kinase; Provisional	81.63
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	81.43
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	81.34
COG4026	290	Uncharacterized protein containing TOPRIM domain,	81.19
cd09235	339	V_Alix Middle V-domain of mammalian Alix and relat	80.96
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	80.82
PRK10698	222	phage shock protein PspA; Provisional	80.54
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	80.54
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.5
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	80.23
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.16
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	80.05

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=99.75  E-value=1.8e-15  Score=164.56  Aligned_cols=208  Identities=17%  Similarity=0.307  Sum_probs=145.7

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 000924          662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK-----  736 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLR-----  736 (1222)
                      ...+..++..+...+..+++.|+.++.+++.++++|++|+.++++++++.++++..+++.++++..++...+.++     
T Consensus         8 ~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e   87 (294)
T COG1340           8 LDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE   87 (294)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777888899999999999999999999999999999999888887777776666666655544322110     


Q ss_pred             -----------------cCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHH
Q 000924          737 -----------------NAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQK  799 (1222)
Q Consensus       737 -----------------nAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQK  799 (1222)
                                       ...++..|.+.|.+|||.+||.+||+.+|+++|++|++|++......              ..
T Consensus        88 L~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~--------------k~  153 (294)
T COG1340          88 LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAK--------------KA  153 (294)
T ss_pred             HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence                             13699999999999999999999999999999999999998865441              12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924          800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY  879 (1222)
Q Consensus       800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqn  879 (1222)
                      ...+.+++.|.+++++++.+...++.++.+|..+.++++.+|..+..+.+.++...|++-+.+-.+++..++.+..|-+.
T Consensus       154 ~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~  233 (294)
T COG1340         154 LEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNL  233 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            23455666777777777776666666555555555555555555555555555555555555444444444444444444


Q ss_pred             HHHH
Q 000924          880 KDDT  883 (1222)
Q Consensus       880 Rr~i  883 (1222)
                      +..+
T Consensus       234 ~~el  237 (294)
T COG1340         234 QNEL  237 (294)
T ss_pred             HHHH
Confidence            3333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.97  E-value=9.9e-07  Score=97.45  Aligned_cols=198  Identities=16%  Similarity=0.237  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000924          663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQT-------IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN--  733 (1222)
Q Consensus       663 EeLKAKIdeLqKEIeKLnq~RdaI~eELka-------lRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn--  733 (1222)
                      ..+..+.+.+.+++..+...|++++.+.+.       ++.+|+++++++..+++++...+..++..+++++.+...++  
T Consensus        23 ~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~  102 (294)
T COG1340          23 EELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEF  102 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            345566667777777777777777666543       46677777777777777777777666666666666555433  


Q ss_pred             --hhcc------------------CCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHH
Q 000924          734 --MMKN------------------AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQ  793 (1222)
Q Consensus       734 --KLRn------------------AkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQ  793 (1222)
                        ..+.                  -.|+++=+..|..+..        |..+....+.+........      +.++++.
T Consensus       103 ~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~--------L~k~le~~~k~~e~~~~~~------el~aei~  168 (294)
T COG1340         103 NLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKE--------LRKELEDAKKALEENEKLK------ELKAEID  168 (294)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence              1111                  1243333333333322        4444444444444443322      2245555


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          794 LAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN  873 (1222)
Q Consensus       794 ESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkN  873 (1222)
                      +.......++++|..|..+++++..++..+..+++++.++.+.++.++.++....+.+++....++++|..|.+....+.
T Consensus       169 ~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~  248 (294)
T COG1340         169 ELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR  248 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666678888999999999999999999999999999999999999999999999999998888888888888766554


Q ss_pred             H
Q 000924          874 Q  874 (1222)
Q Consensus       874 k  874 (1222)
                      .
T Consensus       249 ~  249 (294)
T COG1340         249 A  249 (294)
T ss_pred             H
Confidence            4

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.37  E-value=0.00052  Score=79.60  Aligned_cols=78  Identities=9%  Similarity=0.118  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK  878 (1222)
Q Consensus       801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYq  878 (1222)
                      ....++..+..++.+++..+...+..+..+..+...++.+|.+|......+.....++..+|.+++.++.+..+..+.
T Consensus       327 ~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~  404 (562)
T PHA02562        327 EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH  404 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445555555666666666665566666666666667777777776666677777777777777777776665544

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.33  E-value=0.0008  Score=83.29  Aligned_cols=34  Identities=12%  Similarity=0.293  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHH
Q 000924          664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY  697 (1222)
Q Consensus       664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaER  697 (1222)
                      .+..++..+..++..+......+..++..++.+.
T Consensus       678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~  711 (1164)
T TIGR02169       678 RLRERLEGLKRELSSLQSELRRIENRLDELSQEL  711 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.30  E-value=0.0011  Score=80.84  Aligned_cols=30  Identities=10%  Similarity=0.353  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHH
Q 000924          664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTI  693 (1222)
Q Consensus       664 eLKAKIdeLqKEIeKLnq~RdaI~eELkal  693 (1222)
                      .+..+|..++.++..++..+..+..++..+
T Consensus       456 ~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~  485 (880)
T PRK03918        456 EYTAELKRIEKELKEIEEKERKLRKELREL  485 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666665555555554433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.27  E-value=0.00079  Score=83.36  Aligned_cols=32  Identities=16%  Similarity=0.337  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Q 000924          663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIR  694 (1222)
Q Consensus       663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalR  694 (1222)
                      ..+..++..++.++..+......+..++..++
T Consensus       684 ~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~  715 (1164)
T TIGR02169       684 EGLKRELSSLQSELRRIENRLDELSQELSDAS  715 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.20  E-value=0.0017  Score=83.02  Aligned_cols=54  Identities=9%  Similarity=0.292  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARES  717 (1222)
Q Consensus       664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlRee  717 (1222)
                      .+..+|..+...+..+......+..++..+...+.++..++..++-++..++..
T Consensus       671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  724 (1163)
T COG1196         671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE  724 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555554444444444444444444444444444444443333333

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.20  E-value=0.0028  Score=78.20  Aligned_cols=54  Identities=17%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE  716 (1222)
Q Consensus       663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlRe  716 (1222)
                      ..+..+++.++.++..+......+..++..+..+...+..++..+..++..+..
T Consensus       673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  726 (1179)
T TIGR02168       673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR  726 (1179)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666655555555555555555555555444444444333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.20  E-value=0.0021  Score=79.14  Aligned_cols=67  Identities=18%  Similarity=0.348  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV  728 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~L  728 (1222)
                      ...++..++.++.++..+......+..++..++.+...+..++..+...+..++..+.....++..+
T Consensus       679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  745 (1179)
T TIGR02168       679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL  745 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666666666666666555555555555555555554444444444444444433333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.18  E-value=0.0018  Score=85.82  Aligned_cols=217  Identities=17%  Similarity=0.259  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----CCHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 000924          694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA-----ISVDDIDGSIRNMEHRIAHETLPLKEEKQI  768 (1222)
Q Consensus       694 RaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnA-----kSVEEIDarIa~LE~RIQTgSLSLvEEKKL  768 (1222)
                      ..+...+..+++.|..++..+++.+....++-+.+.+.++.+...     .-...+.+.+..||-.|.---..|..|+++
T Consensus       956 ~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~ 1035 (1930)
T KOG0161|consen  956 ELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRI 1035 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444333333333332110     134456667788888888888899999999


Q ss_pred             HHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          769 IREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQF  848 (1222)
Q Consensus       769 LKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeEl  848 (1222)
                      ..+....++..+  ......+..+.....+++.+..+++....++..+..++......+..+.+.+.++...|.+|.+++
T Consensus      1036 r~e~Ek~~rkle--~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1036 RMELEKAKRKLE--GELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred             HHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998884433322  222233444444455666677777777777777777777766666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHH--------------HHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000924          849 KAADEIRQEAYKHWQS-------LKKQAYDK--------------NQHFWKYKDDTKQANDLASKGDREALQHLCVNQVE  907 (1222)
Q Consensus       849 kAL~EKRDEAYeeIke-------LRKERDEk--------------NkeFYqnRr~i~KARELAakgdveELeelC~aEVE  907 (1222)
                      .+-...|.++=..+..       |+.+.++.              ...|+..|+.+..+. +.....+.+|+..|...+.
T Consensus      1114 e~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~-~~~e~~~~~lr~~~~~~~~ 1192 (1930)
T KOG0161|consen 1114 EAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEET-LDHEAQIEELRKKHADSLA 1192 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence            6555555555444444       44433332              124444454444332 2234555666666666666


Q ss_pred             HHHHHH
Q 000924          908 RVLELW  913 (1222)
Q Consensus       908 kFMelW  913 (1222)
                      ..-+..
T Consensus      1193 el~~ql 1198 (1930)
T KOG0161|consen 1193 ELQEQL 1198 (1930)
T ss_pred             HHHHHH
Confidence            655554

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.18  E-value=0.0032  Score=80.54  Aligned_cols=93  Identities=14%  Similarity=0.251  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW  877 (1222)
Q Consensus       798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFY  877 (1222)
                      +...++.++..++.+++.+...++.+...+..+..++.++..++..++.++..+......+-+.+..++..+.++...|-
T Consensus       391 ~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  470 (1163)
T COG1196         391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA  470 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666667777777777777777777777777777777777777777777777777777888888888888888777


Q ss_pred             HhHHHHHHHHHHH
Q 000924          878 KYKDDTKQANDLA  890 (1222)
Q Consensus       878 qnRr~i~KARELA  890 (1222)
                      .++..+..++...
T Consensus       471 ~~~~~~~~~~~~l  483 (1163)
T COG1196         471 ELQEELQRLEKEL  483 (1163)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776666653

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.17  E-value=0.0027  Score=75.85  Aligned_cols=188  Identities=17%  Similarity=0.286  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Q 000924          665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDI  744 (1222)
Q Consensus       665 LKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEI  744 (1222)
                      +..+++..+++..+|.+....|..+...++.+-..|...|...+.+...+.....+.....+.+......|.  ...++.
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~--~q~~e~  218 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLK--EQLAEA  218 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            556666666666666666666666665555555555555555555544444444333333333333333332  134455


Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          745 DGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE  824 (1222)
Q Consensus       745 DarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLe  824 (1222)
                      ..+|..||..|.+-+-...+--+++.+++.++..+++...  ..+..++....+......+...+..+++.++.+|..++
T Consensus       219 ~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~--eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q  296 (546)
T PF07888_consen  219 RQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEA--ELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQ  296 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            6677777777765554455666666666666555544321  11122333333322222222333444444444433333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          825 AATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQ  863 (1222)
Q Consensus       825 aElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIk  863 (1222)
                      ..       +...+.+..-|.+++.++...||.....+.
T Consensus       297 e~-------lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh  328 (546)
T PF07888_consen  297 EQ-------LQASQQEAELLRKELSDAVNVRDRTMAELH  328 (546)
T ss_pred             HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33       333334444455555555555555544443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.14  E-value=0.0058  Score=71.17  Aligned_cols=25  Identities=16%  Similarity=0.372  Sum_probs=10.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhH
Q 000924          666 REQIKAAQSKVDEKTRSRDAIRDDI  690 (1222)
Q Consensus       666 KAKIdeLqKEIeKLnq~RdaI~eEL  690 (1222)
                      +.++..+++++..+......+..++
T Consensus       173 k~~~~e~~~~i~~l~~~i~~l~~~i  197 (562)
T PHA02562        173 KDKIRELNQQIQTLDMKIDHIQQQI  197 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444333333333

>PRK02224 chromosome segregation protein; Provisional

Probab=98.14  E-value=0.0063  Score=74.92  Aligned_cols=41  Identities=12%  Similarity=0.246  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000924          850 AADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLA  890 (1222)
Q Consensus       850 AL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELA  890 (1222)
                      .+....+.+-.++..|+..........-.++..+..++.+.
T Consensus       409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l  449 (880)
T PRK02224        409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALL  449 (880)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555566666665565555555666666666533

>PRK11637 AmiB activator; Provisional

Probab=98.07  E-value=0.0061  Score=70.07  Aligned_cols=67  Identities=21%  Similarity=0.325  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQ  729 (1222)
Q Consensus       663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQ  729 (1222)
                      ..++.+|++++++|+++.+....+..+++....+...+..+|..+..++......+...-.+|..++
T Consensus        43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~  109 (428)
T PRK11637         43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN  109 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777666666555555555555444444444444444444444444433333333333

>PRK02224 chromosome segregation protein; Provisional

Probab=98.03  E-value=0.012  Score=72.44  Aligned_cols=41  Identities=10%  Similarity=0.165  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          827 TQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKK  867 (1222)
Q Consensus       827 lKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRK  867 (1222)
                      ++.+..+++.+...+..+..++..+...+..+...+..|..
T Consensus       648 ~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~  688 (880)
T PRK02224        648 IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVEN  688 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555554444444443

>PRK03918 chromosome segregation protein; Provisional

Probab=98.03  E-value=0.012  Score=72.30  Aligned_cols=22  Identities=9%  Similarity=0.173  Sum_probs=11.1

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTRSR  683 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~R  683 (1222)
                      ...+..+|..++.++..++...
T Consensus       461 i~~l~~~~~~l~~~~~~l~~~~  482 (880)
T PRK03918        461 LKRIEKELKEIEEKERKLRKEL  482 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555444433

>TIGR00606 rad50 rad50

Probab=98.02  E-value=0.0033  Score=81.30  Aligned_cols=148  Identities=14%  Similarity=0.182  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHH
Q 000924          739 ISVDDIDGSIRNMEHRIAHETLP----LKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEAD  814 (1222)
Q Consensus       739 kSVEEIDarIa~LE~RIQTgSLS----LvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEID  814 (1222)
                      .|+++|...|..++..+..-.-.    ..+-.++-++|++|+.....+   -..+.++...+..+..+..+|..|..++.
T Consensus       822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el---~~~klkl~~~l~~r~~le~~L~el~~el~  898 (1311)
T TIGR00606       822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL---KSEKLQIGTNLQRRQQFEEQLVELSTEVQ  898 (1311)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666666666666655543211    122223334444444332222   12233333333334444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC
Q 000924          815 SLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGD  894 (1222)
Q Consensus       815 ELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgd  894 (1222)
                      .++..       ++.+..++..+...+..++.++..+...++..+.   +++.+.+..+..+-+........++|...|-
T Consensus       899 ~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~  968 (1311)
T TIGR00606       899 SLIRE-------IKDAKEQDSPLETFLEKDQQEKEELISSKETSNK---KAQDKVNDIKEKVKNIHGYMKDIENKIQDGK  968 (1311)
T ss_pred             HHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            44444       3344444444444444444444444433333332   2244444444444444555555555555554


Q ss_pred             HHHHH
Q 000924          895 REALQ  899 (1222)
Q Consensus       895 veELe  899 (1222)
                      -..|.
T Consensus       969 ~~qL~  973 (1311)
T TIGR00606       969 DDYLK  973 (1311)
T ss_pred             HHHHH
Confidence            44343

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11637 AmiB activator; Provisional

Probab=97.96  E-value=0.007  Score=69.60  Aligned_cols=73  Identities=10%  Similarity=0.214  Sum_probs=47.1

Q ss_pred             ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN  733 (1222)
Q Consensus       661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn  733 (1222)
                      ....++.+|..++++|..+......+..++..+..+...+..++..+..++......+....++|..++..|.
T Consensus        48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~  120 (428)
T PRK11637         48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA  120 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777888888887777777777777776666666666666666666655555555555555555555443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.92  E-value=0.0023  Score=68.60  Aligned_cols=91  Identities=23%  Similarity=0.274  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          797 DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF  876 (1222)
Q Consensus       797 dQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeF  876 (1222)
                      ..-+.+..+|..|..++..+...++.+......+..+.+.+..+|..|..+++.+-...+.+-.....|-.+.+.+...+
T Consensus       134 eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL  213 (237)
T PF00261_consen  134 ERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL  213 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677889999999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHH
Q 000924          877 WKYKDDTKQAN  887 (1222)
Q Consensus       877 YqnRr~i~KAR  887 (1222)
                      +..+.....++
T Consensus       214 ~~~k~~~~~~~  224 (237)
T PF00261_consen  214 EKEKEKYKKVQ  224 (237)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            87777665443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.86  E-value=0.012  Score=73.51  Aligned_cols=245  Identities=13%  Similarity=0.229  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH
Q 000924          663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVD  742 (1222)
Q Consensus       663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVE  742 (1222)
                      .+|.+.++.++.+|+..++..++++..++.....|.....+...|+.+......++....+.+.+....|..++  .+..
T Consensus       681 ~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~--~~l~  758 (1200)
T KOG0964|consen  681 KELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIK--TSLH  758 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH--HHHH
Confidence            34666677777777777777777777777776666666666666655555555444444444444444444444  3555


Q ss_pred             HHHHHHHHHHHHhhcCC---CChHHHHH---HHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHH-H
Q 000924          743 DIDGSIRNMEHRIAHET---LPLKEEKQ---IIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEAD-S  815 (1222)
Q Consensus       743 EIDarIa~LE~RIQTgS---LSLvEEKK---LLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEID-E  815 (1222)
                      .+......+|..+.+.-   |++.+..+   +=.+|.+|......+..   .+          -.|..++.++..++. .
T Consensus       759 ~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~---er----------~~~~~rk~~le~~l~~k  825 (1200)
T KOG0964|consen  759 KLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALRE---ER----------IDIETRKTALEANLNTK  825 (1200)
T ss_pred             HHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHH---HH----------HHHHHHHHHHHHHHHHH
Confidence            56666666666666543   56666543   33456555555433311   11          112222223322222 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCH
Q 000924          816 LRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDR  895 (1222)
Q Consensus       816 LRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdv  895 (1222)
                      |...++.+.+++..+.  ......++...+.++..+..+...+..++..|....+.+.+.--+.+..+-+++.|+.....
T Consensus       826 L~~r~~~l~~ei~~~~--d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~  903 (1200)
T KOG0964|consen  826 LYKRVNELEQEIGDLN--DSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKD  903 (1200)
T ss_pred             HHhhhhHHHHHhhhcc--cccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333333333333222  11223344444444555555555555555566666666666666666666677777543222


Q ss_pred             HHHHHHHHHHHHHHHHHHhCChHHHHHHHHhh
Q 000924          896 EALQHLCVNQVERVLELWNNNDEFRKEYVNSN  927 (1222)
Q Consensus       896 eELeelC~aEVEkFMelWN~dkeFRkDYeKrn  927 (1222)
                      . +.  ...++|+.|..-+.-..=|++|.++|
T Consensus       904 ~-~~--~dKe~Ek~~~rk~~Ll~KreE~~ekI  932 (1200)
T KOG0964|consen  904 N-IN--FDKELEKLVRRKHMLLKKREECCEKI  932 (1200)
T ss_pred             h-hh--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 22  23899999999888888888888884

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.84  E-value=0.0055  Score=67.01  Aligned_cols=169  Identities=17%  Similarity=0.245  Sum_probs=95.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHH
Q 000924          686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEE  765 (1222)
Q Consensus       686 I~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEE  765 (1222)
                      |..++..+.-+++..+.-|+.+++++..++..+..+..+++.++..+..+.  ..+.++..+|+.++..| ...-+..+=
T Consensus        15 lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e--~ei~~~r~r~~~~e~kl-~~v~~~~e~   91 (239)
T COG1579          15 LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLE--SEIQEIRERIKRAEEKL-SAVKDEREL   91 (239)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-hccccHHHH
Confidence            333334444444455555555555555666666666666666666555443  46777788899999988 444455555


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          766 KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL  845 (1222)
Q Consensus       766 KKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQ  845 (1222)
                      ..|-.||..++..+..+             ..+...+.+++..|.+++..++..+..++..+-++.       +.   +.
T Consensus        92 ~aL~~E~~~ak~r~~~l-------------e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~-------~~---~e  148 (239)
T COG1579          92 RALNIEIQIAKERINSL-------------EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE-------AR---LE  148 (239)
T ss_pred             HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HH
Confidence            66667777777775544             112233344444455555555554444443333333       22   22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000924          846 GQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK  880 (1222)
Q Consensus       846 eElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR  880 (1222)
                      .++..+++++...+.++..|....+.---.||+..
T Consensus       149 ~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri  183 (239)
T COG1579         149 EEVAEIREEGQELSSKREELKEKLDPELLSEYERI  183 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            23555556666677777777776666555566443

>TIGR00606 rad50 rad50

Probab=97.82  E-value=0.023  Score=73.82  Aligned_cols=39  Identities=13%  Similarity=0.152  Sum_probs=19.9

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEY  700 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdEL  700 (1222)
                      ...+..+|..++.++..+......+..+...++.+...|
T Consensus       824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666655444444444444444433333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=0.0095  Score=74.42  Aligned_cols=171  Identities=13%  Similarity=0.194  Sum_probs=111.0

Q ss_pred             CHHHHHHHHHHHHHHhh--------cCCCChH--HHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHH
Q 000924          740 SVDDIDGSIRNMEHRIA--------HETLPLK--EEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL  809 (1222)
Q Consensus       740 SVEEIDarIa~LE~RIQ--------TgSLSLv--EEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaL  809 (1222)
                      ....+..+|..|+.+..        .+..+-+  .+|||=.||.+|.+..             .+..++...++..+..+
T Consensus       357 ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i-------------~~~ke~e~~lq~e~~~~  423 (1200)
T KOG0964|consen  357 EEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGI-------------NDTKEQENILQKEIEDL  423 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHH-------------hhhhhHHHHHHHHHHHH
Confidence            44555667777776332        2334433  4567888888887762             33344555667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000924          810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDL  889 (1222)
Q Consensus       810 KKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KAREL  889 (1222)
                      ..++.+.-.+++++...+.+...++++..+++.++..+++++...|+.++.+=++||.....+....-.+.+.++.+-.-
T Consensus       424 e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r  503 (1200)
T KOG0964|consen  424 ESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNR  503 (1200)
T ss_pred             HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77777777777777777888888888888888888888888888898888888888888887777666666655543222


Q ss_pred             HhcCCHHHHHHHHHHHH-----HHHHHHHhCChHHHHHH
Q 000924          890 ASKGDREALQHLCVNQV-----ERVLELWNNNDEFRKEY  923 (1222)
Q Consensus       890 AakgdveELeelC~aEV-----EkFMelWN~dkeFRkDY  923 (1222)
                      .-.+=+..+...|...-     =-.|++..-+..|+--.
T Consensus       504 ~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tav  542 (1200)
T KOG0964|consen  504 SVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAV  542 (1200)
T ss_pred             hhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHH
Confidence            11222333333322111     12467777777777543

>PTZ00121 MAEBL; Provisional

Probab=97.67  E-value=0.22  Score=64.97  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=16.8

Q ss_pred             cCCCChHHHHHHHHHHHHHHHHHH
Q 000924          757 HETLPLKEEKQIIREIKQLKQRRE  780 (1222)
Q Consensus       757 TgSLSLvEEKKLLKEIKQLKKsRK  780 (1222)
                      -+-+...||.+.+.||.+++..|.
T Consensus      1239 aEEAkraEEeR~~EE~Rk~Eear~ 1262 (2084)
T PTZ00121       1239 AEEAKKAEEERNNEEIRKFEEARM 1262 (2084)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677777777777777777664

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.63  E-value=0.04  Score=70.22  Aligned_cols=58  Identities=16%  Similarity=0.232  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000924          831 KKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND  888 (1222)
Q Consensus       831 sKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARE  888 (1222)
                      ...+.+.+..++.+...+.....++.++-..+..|+++...++...+..|.-+..++.
T Consensus       534 ~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks  591 (1293)
T KOG0996|consen  534 SESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS  591 (1293)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444555555555555555555555555555444444444

>PRK01156 chromosome segregation protein; Provisional

Probab=97.62  E-value=0.1  Score=64.90  Aligned_cols=29  Identities=17%  Similarity=0.203  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 000924          664 NLREQIKAAQSKVDEKTRSRDAIRDDIQT  692 (1222)
Q Consensus       664 eLKAKIdeLqKEIeKLnq~RdaI~eELka  692 (1222)
                      .+..+|..+.+++.+++.....|...+..
T Consensus       473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~~~  501 (895)
T PRK01156        473 HYNEKKSRLEEKIREIEIEVKDIDEKIVD  501 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555554444444443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.60  E-value=0.2  Score=60.92  Aligned_cols=75  Identities=12%  Similarity=0.117  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          804 EKMKFLRKEADSLRENVIKA--EAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK  878 (1222)
Q Consensus       804 EQIKaLKKEIDELRkKLkkL--eaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYq  878 (1222)
                      +++..+..+++.+..++...  ...+..+.+++++++.++.++..++..+..++..+...+..++++..........
T Consensus       398 ~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  474 (650)
T TIGR03185       398 KELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKIN  474 (650)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444555555544432  2345555666666666666666666666666666666666666666554444333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK01156 chromosome segregation protein; Provisional

Probab=97.59  E-value=0.033  Score=69.18  Aligned_cols=36  Identities=11%  Similarity=0.136  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          833 LHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ  868 (1222)
Q Consensus       833 K~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKE  868 (1222)
                      +++++..++..|.+++..+..++.+.-..+.+|++.
T Consensus       410 ~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~  445 (895)
T PRK01156        410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRN  445 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555544444444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.58  E-value=0.05  Score=65.23  Aligned_cols=82  Identities=16%  Similarity=0.258  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000924          809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAND  888 (1222)
Q Consensus       809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARE  888 (1222)
                      +.+++..+.+.+..+...+......|+.+...+.++.+++..+...+.+..+.+..||+.-.+....+-.++..+...+.
T Consensus       353 lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr  432 (569)
T PRK04778        353 LEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR  432 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333334444455555555555555555555555555555555554444444444444443


Q ss_pred             HH
Q 000924          889 LA  890 (1222)
Q Consensus       889 LA  890 (1222)
                      +.
T Consensus       433 ~l  434 (569)
T PRK04778        433 YL  434 (569)
T ss_pred             HH
Confidence            33

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.54  E-value=0.082  Score=64.15  Aligned_cols=49  Identities=16%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISD  710 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE  710 (1222)
                      ...+..+++.+++++..+......+..++..++.+++.+..++..++.+
T Consensus       204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~  252 (650)
T TIGR03185       204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKK  252 (650)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677777777777777766666666666666666666666655554

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.50  E-value=0.13  Score=62.61  Aligned_cols=24  Identities=17%  Similarity=0.335  Sum_probs=11.9

Q ss_pred             HHHHHHHHhhcCCCChHHHHHHHH
Q 000924          747 SIRNMEHRIAHETLPLKEEKQIIR  770 (1222)
Q Consensus       747 rIa~LE~RIQTgSLSLvEEKKLLK  770 (1222)
                      ++..|..+.+.--.+|.+|.+-|+
T Consensus       409 rl~~L~~qWe~~R~pL~~e~r~lk  432 (594)
T PF05667_consen  409 RLVELAQQWEKHRAPLIEEYRRLK  432 (594)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHH
Confidence            344444444444455555555444

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.50  E-value=0.027  Score=71.36  Aligned_cols=80  Identities=24%  Similarity=0.316  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW  877 (1222)
Q Consensus       798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFY  877 (1222)
                      ++..+.++++-|.+++..+...+..|+.++..+..++.....+...+...+..+..++.---.+|+.|++-.+.....|=
T Consensus       395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG  474 (1074)
T KOG0250|consen  395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG  474 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence            45556666667777777777777777777777777777777777777777777777777777777777776655555444

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.50  E-value=0.15  Score=65.54  Aligned_cols=39  Identities=31%  Similarity=0.298  Sum_probs=30.7

Q ss_pred             cchhhhcccccCCCcceeccccccccccccccccccccc
Q 000924          387 TEPEVLQGGIDGVDERSISVDNAAVESCTSESVYEESTA  425 (1222)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (1222)
                      .-|||||+..+|-++--...|--.+--|.-+-.|.+.|.
T Consensus       243 ISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPF  281 (1317)
T KOG0612|consen  243 ISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPF  281 (1317)
T ss_pred             cCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcc
Confidence            469999999999777777778777777777777777664

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.48  E-value=0.12  Score=69.48  Aligned_cols=85  Identities=13%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000924          801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK  880 (1222)
Q Consensus       801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR  880 (1222)
                      ..++.+..++....++..++.+.+.++-.+..++++++..+..++..++.+...+.++-+.+.+.|..+.+..+.+....
T Consensus      1052 ~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~ 1131 (1930)
T KOG0161|consen 1052 DLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLS 1131 (1930)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33555556677777788888888888889999999999999999999999999999999999999998888888777666


Q ss_pred             HHHHH
Q 000924          881 DDTKQ  885 (1222)
Q Consensus       881 r~i~K  885 (1222)
                      ..+..
T Consensus      1132 ~ele~ 1136 (1930)
T KOG0161|consen 1132 EELEE 1136 (1930)
T ss_pred             HHHHH
Confidence            65543

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.46  E-value=0.26  Score=62.95  Aligned_cols=131  Identities=19%  Similarity=0.252  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          798 QKDQIEEKMKFLRKEADSLRENVIKAEAAT-QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF  876 (1222)
Q Consensus       798 QKEaIqEQIKaLKKEIDELRkKLkkLeaEl-KELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeF  876 (1222)
                      +...++..|..++.+++.+++.+..++++. +.+..+..+..+++..|..+...+..++..+-.+++.++..........
T Consensus       359 ~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~  438 (1074)
T KOG0250|consen  359 EIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK  438 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            344566677788888888888888877777 6666666666666666666666666666666666666666666655555


Q ss_pred             HHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhcC
Q 000924          877 WKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKT  937 (1222)
Q Consensus       877 YqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~rRqlT  937 (1222)
                      +.-++.+...+-- -+.+-..|+.+...+-++.+.       |= .|+-.+|.-..||-.-
T Consensus       439 ~~i~~~i~~l~k~-i~~~~~~l~~lk~~k~dkvs~-------FG-~~m~~lL~~I~r~~~~  490 (1074)
T KOG0250|consen  439 EHIEGEILQLRKK-IENISEELKDLKKTKTDKVSA-------FG-PNMPQLLRAIERRKRR  490 (1074)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHhcccchhhh-------cc-hhhHHHHHHHHHHHhc
Confidence            5443333222111 123445555555555544443       33 6677777666665443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.41  E-value=0.2  Score=66.84  Aligned_cols=292  Identities=14%  Similarity=0.161  Sum_probs=151.6

Q ss_pred             ecCCCCChHHHHHHHHHHHhHHHHHHHHHHH-------HHHhHHHHH----------HHH---HHHHHHHHHHHHHHHHH
Q 000924          655 VKVPRYDDENLREQIKAAQSKVDEKTRSRDA-------IRDDIQTIR----------ASY---KEYAEKLEAAISDERSA  714 (1222)
Q Consensus       655 VKvpRPDDEeLKAKIdeLqKEIeKLnq~Rda-------I~eELkalR----------aER---dELiEQLKeLReE~Kql  714 (1222)
                      |++=|-+.+-+..+++-+..+...+++.-.-       ++..+...|          .++   -....+++.|++-.+.+
T Consensus      1155 v~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~L 1234 (1822)
T KOG4674|consen 1155 VSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVL 1234 (1822)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHH
Confidence            3334446667777777776666555543333       222222211          111   22234555555555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc----C--------CCHHHHHHHHHHHH-----HHh-------hcCCCChHHHHHHHH
Q 000924          715 RESLKSKRQEIDSVQSRINMMKN----A--------ISVDDIDGSIRNME-----HRI-------AHETLPLKEEKQIIR  770 (1222)
Q Consensus       715 Reer~EKIKEIk~LQeaLnKLRn----A--------kSVEEIDarIa~LE-----~RI-------QTgSLSLvEEKKLLK  770 (1222)
                      |.........+..|+..+++++.    +        ..+..+-+.+..|+     |++       ++....+.+=+++-.
T Consensus      1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ 1314 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKS 1314 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            66666655555666666655531    0        12222222222222     222       234455667778888


Q ss_pred             HHHHHHHHHHHhhhhccchhHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          771 EIKQLKQRREQISSSIGEHDEVQLAFDQ-KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK  849 (1222)
Q Consensus       771 EIKQLKKsRKkViAnAa~rAKIQESidQ-KEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk  849 (1222)
                      +|.+|+........   ..+.+...+.. +++++.+++.+..++..+.+++..++..-..+...+.+.++++-++.....
T Consensus      1315 ei~~Lk~el~~ke~---~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~ 1391 (1822)
T KOG4674|consen 1315 EISRLKEELEEKEN---LIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKK 1391 (1822)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887653211   22333333443 356777888888888888888888877777777777777777777776666


Q ss_pred             HHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHhcCCHHHHHHHH
Q 000924          850 AADEIRQEA-----------Y--KHWQSLKKQAYDKNQHFWKYKD--------------DTKQANDLASKGDREALQHLC  902 (1222)
Q Consensus       850 AL~EKRDEA-----------Y--eeIkeLRKERDEkNkeFYqnRr--------------~i~KARELAakgdveELeelC  902 (1222)
                      +.+..+...           |  .++..|++++.+.+.-+-..+.              ....-+.---...+..+....
T Consensus      1392 ~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~e~~ 1471 (1822)
T KOG4674|consen 1392 AHELMQEDTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTERLLEEIKKLLETV 1471 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            655444322           2  4455555555443332222222              111100000112223333333


Q ss_pred             HHHHHHHHHHHhC----ChHHHHHHHHhhhhhHhhhhcCCCCCCCCCCCCC
Q 000924          903 VNQVERVLELWNN----NDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEA  949 (1222)
Q Consensus       903 ~aEVEkFMelWN~----dkeFRkDYeKrnl~Sl~rRqlT~DGR~rnPDEkP  949 (1222)
                      +.....--..-.+    .+.++++|..--.+.+..=+-..+=|+|=|.+.-
T Consensus      1472 ~~~~~~~~~~~~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~eeq 1522 (1822)
T KOG4674|consen 1472 RKKTVDADSKSENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEEQ 1522 (1822)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            3333333333333    3344455554445555555566777888888874

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.17  Score=62.67  Aligned_cols=29  Identities=3%  Similarity=0.242  Sum_probs=20.0

Q ss_pred             CHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 000924          740 SVDDIDGSIRNMEHRIAHETLPLKEEKQI  768 (1222)
Q Consensus       740 SVEEIDarIa~LE~RIQTgSLSLvEEKKL  768 (1222)
                      -.+-|+.+|..|..+++---..+.--|..
T Consensus       445 eletLn~k~qqls~kl~Dvr~~~tt~kt~  473 (1118)
T KOG1029|consen  445 ELETLNFKLQQLSGKLQDVRVDITTQKTE  473 (1118)
T ss_pred             HHHHHHHHHHHHhhhhhhheeccchHHHH
Confidence            56667778888888888766665555543

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.34  E-value=0.21  Score=62.61  Aligned_cols=236  Identities=12%  Similarity=0.212  Sum_probs=136.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cc-----CCCHHHHHHHHHHH
Q 000924          684 DAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM-------KN-----AISVDDIDGSIRNM  751 (1222)
Q Consensus       684 daI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL-------Rn-----AkSVEEIDarIa~L  751 (1222)
                      +.+...+..+..+..-|...+..|+.++......+..|.+.+..++..++.+       +.     -.-+.-|..+|..|
T Consensus       325 ~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~L  404 (775)
T PF10174_consen  325 EVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENL  404 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555677777777777777777777777777777666666654432       11     01223333344444


Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 000924          752 EHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL--------RKEADSLRENVIKA  823 (1222)
Q Consensus       752 E~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaL--------KKEIDELRkKLkkL  823 (1222)
                      +..+-      ..++++-..-..|... ......-.....+..++..++.++..|...        ..+++.+++++..+
T Consensus       405 ee~l~------ekd~ql~~~k~Rl~~~-~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~l  477 (775)
T PF10174_consen  405 EEQLR------EKDRQLDEEKERLSSQ-ADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKEL  477 (775)
T ss_pred             HHHHH------HHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44442      3444444444444410 001011111233444444555554444333        55667777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CCH-------
Q 000924          824 EAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASK-GDR-------  895 (1222)
Q Consensus       824 eaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAak-gdv-------  895 (1222)
                      +..+..+.+++.+....+..++.+.-.+..-..+.+.+|..|...+...++.+-..-..+.+++..+-. ..+       
T Consensus       478 k~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev  557 (775)
T PF10174_consen  478 KAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEV  557 (775)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHH
Confidence            777777777777777777777777777777788888888888888877777776666666553322111 111       


Q ss_pred             HH---HHHHHHHHHHHHHHHHhCChHHHHHHHHh
Q 000924          896 EA---LQHLCVNQVERVLELWNNNDEFRKEYVNS  926 (1222)
Q Consensus       896 eE---LeelC~aEVEkFMelWN~dkeFRkDYeKr  926 (1222)
                      ..   --.-|.+||||.|...-.-..-+.+-.+-
T Consensus       558 ~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~k  591 (775)
T PF10174_consen  558 TRYREESEKAQAEVERLLDILREAENEKNDKEKK  591 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            11   23457899999998776655555555444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.34  E-value=0.21  Score=64.21  Aligned_cols=70  Identities=21%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ  874 (1222)
Q Consensus       805 QIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk  874 (1222)
                      .+..+.++++.++.+++-++.+++-|..+-+....++.+++..+.+.....++.-..+..|...+..++.
T Consensus       487 el~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~  556 (1293)
T KOG0996|consen  487 ELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ  556 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3333444444444444444444444444444444444444444444443444433344444443333333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.05  Score=67.07  Aligned_cols=15  Identities=20%  Similarity=0.169  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 000924          694 RASYKEYAEKLEAAI  708 (1222)
Q Consensus       694 RaERdELiEQLKeLR  708 (1222)
                      |++|.++..|...-.
T Consensus       415 rar~qem~~Qk~req  429 (1118)
T KOG1029|consen  415 RARRQEMLNQKNREQ  429 (1118)
T ss_pred             HHHHHHHHhhhhHHH
Confidence            677777777665433

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.27  E-value=0.072  Score=67.27  Aligned_cols=88  Identities=14%  Similarity=0.268  Sum_probs=53.7

Q ss_pred             cCCceeeecCCCCChHHHHHHHHHHHhHHHHHHH----HHHHHHHhHHHH----------H-HHHHHHHHHHHHHHHHHH
Q 000924          648 KQPFYFLVKVPRYDDENLREQIKAAQSKVDEKTR----SRDAIRDDIQTI----------R-ASYKEYAEKLEAAISDER  712 (1222)
Q Consensus       648 K~~FyYfVKvpRPDDEeLKAKIdeLqKEIeKLnq----~RdaI~eELkal----------R-aERdELiEQLKeLReE~K  712 (1222)
                      +.|+ ||+-=-.+....+...+++++.+|..+-+    .|=.=-+++.+.          - .+.-.+...|..|+...+
T Consensus       113 k~S~-y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~  191 (1072)
T KOG0979|consen  113 KESK-YFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEK  191 (1072)
T ss_pred             CCcc-eeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHH
Confidence            5688 45555666788899999999888875553    333333333322          1 225555566666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q 000924          713 SARESLKSKRQEIDSVQSRINMMK  736 (1222)
Q Consensus       713 qlReer~EKIKEIk~LQeaLnKLR  736 (1222)
                      ++......+-..++.|...+.++.
T Consensus       192 ~Le~~~~~~~~~l~~L~~~~~~l~  215 (1072)
T KOG0979|consen  192 SLEDKLTTKTEKLNRLEDEIDKLE  215 (1072)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHH
Confidence            666666666666666665555553

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.26  E-value=0.66  Score=56.01  Aligned_cols=111  Identities=15%  Similarity=0.273  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHhHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000924          662 DENLREQIKAAQSKVDEKT-----RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK  736 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLn-----q~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLR  736 (1222)
                      .+.+...|-.++..+.+++     ..-+.+...+.....+-..+...|..|.......|..+.......+.++..|-..+
T Consensus        81 ~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~  160 (569)
T PRK04778         81 LPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANR  160 (569)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3567777777777665333     44455667777778888888888888888888888888888888888888775433


Q ss_pred             --cCCCHHHHHHHHHHHHHHhh-----cCCCChHHHHHHHHHH
Q 000924          737 --NAISVDDIDGSIRNMEHRIA-----HETLPLKEEKQIIREI  772 (1222)
Q Consensus       737 --nAkSVEEIDarIa~LE~RIQ-----TgSLSLvEEKKLLKEI  772 (1222)
                        ...+.+.|+.+|..||....     |.+--..+=+.+|.+|
T Consensus       161 ~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l  203 (569)
T PRK04778        161 FSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQL  203 (569)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence              23688888888888886654     3334444444444444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.26  E-value=0.3  Score=63.45  Aligned_cols=73  Identities=16%  Similarity=0.394  Sum_probs=56.3

Q ss_pred             ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN  733 (1222)
Q Consensus       661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn  733 (1222)
                      +.+.|+++++.+...+..+.....++...+.....+.+.+...+..+..++++.+..+.....+...++..+.
T Consensus       601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  673 (1201)
T PF12128_consen  601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE  673 (1201)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            5779999999999999999988888888888877777777777777777777666666666666665555443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.25  E-value=0.46  Score=52.16  Aligned_cols=56  Identities=14%  Similarity=0.415  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL  718 (1222)
Q Consensus       663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer  718 (1222)
                      ..+...|..++..|..+...+..+..++..++.....+..++.........+...+
T Consensus        50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el  105 (312)
T PF00038_consen   50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEEL  105 (312)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667777777777766666666666665555555555444444444333333333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.15  E-value=0.58  Score=51.44  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Q 000924          664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIR  694 (1222)
Q Consensus       664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalR  694 (1222)
                      .+...|+.+..+..++...++.+..++..++
T Consensus        58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r   88 (312)
T PF00038_consen   58 ELRRQIDDLSKEKARLELEIDNLKEELEDLR   88 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence            3444555444444444444444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.14  E-value=0.59  Score=55.19  Aligned_cols=61  Identities=15%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID  726 (1222)
Q Consensus       666 KAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk  726 (1222)
                      ..++++.+++|.+++........+.+++......+...+..+..++.+.-..+.+..+.|.
T Consensus        37 ~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~   97 (420)
T COG4942          37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA   97 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            3556666666666665555555555555444444444444444444444333333333333

>PTZ00121 MAEBL; Provisional

Probab=97.10  E-value=1.3  Score=58.34  Aligned_cols=8  Identities=38%  Similarity=0.156  Sum_probs=4.3

Q ss_pred             chhHHHHh
Q 000924          505 DLVCKEVL  512 (1222)
Q Consensus       505 ~~~~~~~~  512 (1222)
                      -..|.+.|
T Consensus       946 f~eC~e~l  953 (2084)
T PTZ00121        946 FGGCLEYL  953 (2084)
T ss_pred             HHHHHHHH
Confidence            34566654

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.03  E-value=1  Score=54.51  Aligned_cols=112  Identities=16%  Similarity=0.341  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHhHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000924          662 DENLREQIKAAQSKVDE-----KTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK  736 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeK-----Lnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLR  736 (1222)
                      .+++...|..++..+..     .++.-..+...+.....+-..+...|..|.......|..+....+..+.++..|-..+
T Consensus        77 ~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~  156 (560)
T PF06160_consen   77 LPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHS  156 (560)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34566666666665552     2344445566666777777777777777777777777777777777777777664433


Q ss_pred             --cCCCHHHHHHHHHHHHHHhh-----cCCCChHHHHHHHHHHH
Q 000924          737 --NAISVDDIDGSIRNMEHRIA-----HETLPLKEEKQIIREIK  773 (1222)
Q Consensus       737 --nAkSVEEIDarIa~LE~RIQ-----TgSLSLvEEKKLLKEIK  773 (1222)
                        ...+.+.|+.++..||....     |.+--..+=+.+|.+|+
T Consensus       157 ~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~  200 (560)
T PF06160_consen  157 FSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLK  200 (560)
T ss_pred             hhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              23578888888877776554     23334445555555543

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.01  E-value=0.47  Score=61.79  Aligned_cols=50  Identities=14%  Similarity=0.181  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000924          834 HREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT  883 (1222)
Q Consensus       834 ~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i  883 (1222)
                      ++.....+...+.+...+......+-....+++.+++.....+-..++.+
T Consensus       471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~  520 (1201)
T PF12128_consen  471 LEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARREL  520 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444555555555555554444443333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.99  E-value=0.49  Score=63.06  Aligned_cols=73  Identities=14%  Similarity=0.287  Sum_probs=45.2

Q ss_pred             eecCCCCChHHHHHHHHHHHhHHHHHHHHHHHH------------------------------HHhHHHHHHHHHHHHHH
Q 000924          654 LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAI------------------------------RDDIQTIRASYKEYAEK  703 (1222)
Q Consensus       654 fVKvpRPDDEeLKAKIdeLqKEIeKLnq~RdaI------------------------------~eELkalRaERdELiEQ  703 (1222)
                      |..+|.+-..+.++.|..|+.+++.+-..=...                              ..+|..++.+|.++..+
T Consensus       773 ~p~~p~~gr~are~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~  852 (1486)
T PRK04863        773 FPEVPLFGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERA  852 (1486)
T ss_pred             CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHH
Confidence            466677788899999999988887555421111                              12234456777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 000924          704 LEAAISDERSARESLKSKRQEID  726 (1222)
Q Consensus       704 LKeLReE~KqlReer~EKIKEIk  726 (1222)
                      |..+..+..+.+..+..-...+.
T Consensus       853 l~~~~~~~~~~~~~~~~~~~~~~  875 (1486)
T PRK04863        853 LADHESQEQQQRSQLEQAKEGLS  875 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776666655555544333333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.93  E-value=1.4  Score=55.80  Aligned_cols=42  Identities=10%  Similarity=0.235  Sum_probs=28.5

Q ss_pred             CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924          740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI  782 (1222)
Q Consensus       740 SVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV  782 (1222)
                      ...+|..+...|+..+++- +.......+=..++.|...+..+
T Consensus       601 ~~~~l~~~~~~l~~~~~~~-~~~~~~~e~~~~~~~l~~~~~~l  642 (908)
T COG0419         601 KLKELEERLSQLEELLQSL-ELSEAENELEEAEEELESELEKL  642 (908)
T ss_pred             HHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            5777788888888888777 55555656666666666665555

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.89  E-value=0.67  Score=59.15  Aligned_cols=103  Identities=16%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000924          802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD  881 (1222)
Q Consensus       802 IqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr  881 (1222)
                      +...|+.++..+++-.+.+.+...+...|.-..+++..++.....++..+......+-.++..|+...+.....      
T Consensus       792 l~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~------  865 (1174)
T KOG0933|consen  792 LEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD------  865 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH------
Confidence            33344444445555445444444444445544444444444444444444444444444444444433332222      


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 000924          882 DTKQANDLASKGDREALQHLCVNQVERVLELW  913 (1222)
Q Consensus       882 ~i~KARELAakgdveELeelC~aEVEkFMelW  913 (1222)
                       ..++...  =++..+-+..|++|+..++..|
T Consensus       866 -~~~~~~e--l~~~k~k~~~~dt~i~~~~~~~  894 (1174)
T KOG0933|consen  866 -VKKAQAE--LKDQKAKQRDIDTEISGLLTSQ  894 (1174)
T ss_pred             -HHHHHHH--HHHHHHHHHhhhHHHhhhhhHH
Confidence             1121111  1334445566777777777777

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.89  E-value=0.65  Score=61.38  Aligned_cols=39  Identities=8%  Similarity=0.195  Sum_probs=20.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000924          665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEK  703 (1222)
Q Consensus       665 LKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQ  703 (1222)
                      -..+|.+|+.+|..+......+..++..+..++..|...
T Consensus       740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e  778 (1353)
T TIGR02680       740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADE  778 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555554444444443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.88  E-value=0.13  Score=56.61  Aligned_cols=17  Identities=18%  Similarity=0.272  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 000924          826 ATQAVKKLHREESEKLK  842 (1222)
Q Consensus       826 ElKELsKK~DEIkaEI~  842 (1222)
                      ++..+.+++..++.++.
T Consensus       118 ~~~~l~~~i~~l~~~~~  134 (239)
T COG1579         118 EIEKLEKEIEDLKERLE  134 (239)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.86  E-value=1.6  Score=51.73  Aligned_cols=58  Identities=14%  Similarity=0.345  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS  720 (1222)
Q Consensus       663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~E  720 (1222)
                      ..+...|+.+.+.|....+.+.+|..+|+.+..+-+.+..+|.+....++.++..+..
T Consensus        41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~   98 (420)
T COG4942          41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD   98 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence            3566666666666666666666666666555555555555555555444444444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.85  E-value=1.9  Score=52.51  Aligned_cols=66  Identities=12%  Similarity=0.297  Sum_probs=27.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI  732 (1222)
Q Consensus       667 AKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaL  732 (1222)
                      .+...|.+....+......+..++..+.........+...|..+.+.+.........+.+.|...+
T Consensus       150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~  215 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL  215 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444333333333344444444333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.84  E-value=0.58  Score=59.68  Aligned_cols=76  Identities=11%  Similarity=0.119  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW  877 (1222)
Q Consensus       802 IqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFY  877 (1222)
                      ...+|..|+.+++.++.++.......+++.+++.++++.+..+..++..+-...++...++....-.+.++...+-
T Consensus       841 ~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~  916 (1174)
T KOG0933|consen  841 LEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVT  916 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHH
Confidence            3344455555555555555555555555555555555555555554444444445555555444444444444443

>PRK09039 hypothetical protein; Validated

Probab=96.82  E-value=0.35  Score=55.30  Aligned_cols=54  Identities=13%  Similarity=0.163  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL  718 (1222)
Q Consensus       665 LKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer  718 (1222)
                      |...|...++++.++......+-..+.--+.+...+..++..++.++..++..+
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r   97 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAER   97 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666665555666666667777777777777777666444433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.82  E-value=0.43  Score=60.17  Aligned_cols=70  Identities=17%  Similarity=0.166  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHH
Q 000924          833 LHREESEKLKRLLGQFK-AADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCV  903 (1222)
Q Consensus       833 K~DEIkaEI~ELQeElk-AL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~  903 (1222)
                      .++++++++.+.+.++. .|.++.|.+--++++|.++++...+..|.+--.|.|.|+|.++-+ ..|+++.+
T Consensus       476 alee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq-dqlqe~~d  546 (1243)
T KOG0971|consen  476 ALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ-DQLQELTD  546 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence            34556667777666654 788999999999999999999999999999999999999986522 34444433

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.81  E-value=2.3  Score=52.81  Aligned_cols=205  Identities=18%  Similarity=0.216  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 000924          695 ASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN-MMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK  773 (1222)
Q Consensus       695 aERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn-KLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIK  773 (1222)
                      .-|.++..++-.|..+...+-.+++..+++++.|+..|. +|.. .-..|-|..|+.|...=+-  |    =|+.|.+=.
T Consensus       402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~-DeLaEkdE~I~~lm~EGEk--L----SK~ql~qs~  474 (961)
T KOG4673|consen  402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK-DELAEKDEIINQLMAEGEK--L----SKKQLAQSA  474 (961)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH--h----HHHHHHHHH
Confidence            345566666666666655666666666777776666553 2221 2345567777776432111  1    155666555


Q ss_pred             HHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 000924          774 QLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLR--------------ENVIKAEAATQAVKKLHREESE  839 (1222)
Q Consensus       774 QLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELR--------------kKLkkLeaElKELsKK~DEIka  839 (1222)
                      ..+++|.+...+-.+-+          ...++|+.|-.|.+-|+              ..+.++.++++-..+.|...+.
T Consensus       475 iIkKLRAk~ke~etl~~----------K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~  544 (961)
T KOG4673|consen  475 IIKKLRAKIKEAETLEE----------KKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRA  544 (961)
T ss_pred             HHHHHHHHhhhhhHHHH----------HhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            55555554433221111          12223334433333333              3333334444444444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH---HhCC
Q 000924          840 KLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLEL---WNNN  916 (1222)
Q Consensus       840 EI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMel---WN~d  916 (1222)
                      .+..|+.++.++..--|.+|..+                     .++..|- +-..++=+..+..||+-.-.-   --..
T Consensus       545 ~~~~le~~~~a~qat~d~a~~Dl---------------------qk~nrlk-Qdear~~~~~lvqqv~dLR~~L~~~Eq~  602 (961)
T KOG4673|consen  545 LAAALEAQALAEQATNDEARSDL---------------------QKENRLK-QDEARERESMLVQQVEDLRQTLSKKEQQ  602 (961)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhH---------------------HHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555422                     1111110 111111222223333322211   1223


Q ss_pred             hHHHHHHHHhhhhhHhhhhcCC
Q 000924          917 DEFRKEYVNSNIRSTLRRLKTL  938 (1222)
Q Consensus       917 keFRkDYeKrnl~Sl~rRqlT~  938 (1222)
                      -++|+||.+.-..-|-||+.--
T Consensus       603 aarrEd~~R~Ei~~LqrRlqaa  624 (961)
T KOG4673|consen  603 AARREDMFRGEIEDLQRRLQAA  624 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888888888887643

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.81  E-value=0.36  Score=59.99  Aligned_cols=140  Identities=21%  Similarity=0.332  Sum_probs=71.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHH
Q 000924          686 IRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEE  765 (1222)
Q Consensus       686 I~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEE  765 (1222)
                      |+.+|+..|..=.+|+.++..|..-.+.++..+..++++.+.|+..+..|.+  +-..=...|..||.+       |.+|
T Consensus       430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~--aRq~DKq~l~~LEkr-------L~eE  500 (697)
T PF09726_consen  430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ--ARQQDKQSLQQLEKR-------LAEE  500 (697)
T ss_pred             HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-------HHHH
Confidence            4455566666666777777766666677777777778888888777766532  111112346677776       4455


Q ss_pred             HHHHHHH-HHHHHHHHHhhh--hccchh--HHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          766 KQIIREI-KQLKQRREQISS--SIGEHD--EVQLAF-DQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLH  834 (1222)
Q Consensus       766 KKLLKEI-KQLKKsRKkViA--nAa~rA--KIQESi-dQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~  834 (1222)
                      ++.=..+ +||...|+.-..  -.+.++  .-+..+ +--+....+.+.|-.|+..||.+++..++.+..+..++
T Consensus       501 ~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  501 RRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444333 234333332111  011111  000111 11223445555566666666665555555555554444

; GO: 0016021 integral to membrane

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.81  E-value=0.2  Score=60.48  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          693 IRASYKEYAEKLEAAISDERSARESL  718 (1222)
Q Consensus       693 lRaERdELiEQLKeLReE~KqlReer  718 (1222)
                      ++.+...+.++++.|+.+...++..+
T Consensus       160 ~krr~~~le~e~~~Lk~en~rl~~~l  185 (546)
T KOG0977|consen  160 LKRRIKALEDELKRLKAENSRLREEL  185 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            33444444444444444433333333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.78  E-value=1.7  Score=52.97  Aligned_cols=19  Identities=5%  Similarity=0.331  Sum_probs=9.9

Q ss_pred             cCCHHHHHHHHHHHHHHHH
Q 000924          892 KGDREALQHLCVNQVERVL  910 (1222)
Q Consensus       892 kgdveELeelC~aEVEkFM  910 (1222)
                      +...++|+..|..++.+.-
T Consensus       263 ~~nR~diE~~Y~~kI~~i~  281 (546)
T KOG0977|consen  263 RQNRKDIESWYKRKIQEIR  281 (546)
T ss_pred             HHhHHHHHHHHHHHHHHHH
Confidence            3445555555555555544

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.72  E-value=1.6  Score=52.54  Aligned_cols=76  Identities=13%  Similarity=0.173  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          798 QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN  873 (1222)
Q Consensus       798 QKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkN  873 (1222)
                      +...++..+..|+.+|...+..+..++.........+..++.++..++.++..+...-.++-..+..|...+..+.
T Consensus       303 E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~  378 (522)
T PF05701_consen  303 EASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLS  378 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHH
Confidence            3334444555555555555555555555555555555555555555555555554444433333333333333333

Several sequences in this family are described as being myosin heavy chain-like.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=96.68  E-value=1.4  Score=52.70  Aligned_cols=42  Identities=19%  Similarity=0.319  Sum_probs=32.5

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHHHHHHH
Q 000924          739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE-IKQLKQRRE  780 (1222)
Q Consensus       739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKE-IKQLKKsRK  780 (1222)
                      +++.+|++.|..+=+..+..+|+|.|-..-++- |..|.....
T Consensus       462 ~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~  504 (622)
T COG5185         462 KSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILE  504 (622)
T ss_pred             HHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHH
Confidence            488999999999999999999999988766553 444544433

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.68  E-value=1.6  Score=54.18  Aligned_cols=37  Identities=22%  Similarity=0.406  Sum_probs=27.2

Q ss_pred             CChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Q 000924          660 YDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRAS  696 (1222)
Q Consensus       660 PDDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaE  696 (1222)
                      ++.+++-.+|+.|++.++-+...|++++.+++.+|.+
T Consensus       402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~e  438 (961)
T KOG4673|consen  402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKE  438 (961)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3556677778888888888888888888877766543

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.65  E-value=2.2  Score=50.31  Aligned_cols=206  Identities=16%  Similarity=0.164  Sum_probs=93.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCC
Q 000924          681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL  760 (1222)
Q Consensus       681 q~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSL  760 (1222)
                      -.|++.+.++.+.+.+|.....++.+++..+-.....+....+....||..|+.+         -..-.+|+.+.|+   
T Consensus       102 ~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l---------~~qr~ql~aq~qs---  169 (499)
T COG4372         102 TEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTL---------AEQRRQLEAQAQS---  169 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---
Confidence            3455555555555555555555555554444333333333333444444444332         2333444444444   


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          761 PLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKD----QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHRE  836 (1222)
Q Consensus       761 SLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKE----aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DE  836 (1222)
                      =+.+-|.|-.-..+|+-.+..+..-.   ++    +.|.+    .-.+.+..+.+|+......+...-+++....++++.
T Consensus       170 l~a~~k~LQ~s~~Qlk~~~~~L~~r~---~~----ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q  242 (499)
T COG4372         170 LQASQKQLQASATQLKSQVLDLKLRS---AQ----IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQ  242 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11222222223334444333331110   11    11211    112334444555554444444444444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000924          837 ESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQV  906 (1222)
Q Consensus       837 IkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEV  906 (1222)
                      ...+|..-.+.+.+--.+-+.+-....-|-.+...+..+|..|++....+--+. .|.+-+--.+-.+++
T Consensus       243 ~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~~a~~-rGQvla~a~~rv~q~  311 (499)
T COG4372         243 KAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQ-RGQVLAGAAQRVAQA  311 (499)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHH
Confidence            555555544444444444444444555555566667777778888776554442 455544433333443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.62  E-value=2.5  Score=57.21  Aligned_cols=66  Identities=11%  Similarity=0.161  Sum_probs=41.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRIN  733 (1222)
Q Consensus       668 KIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLn  733 (1222)
                      ....+.+.|..+.++-..+..+...++.+++.+..+|..+..+...+...+......+.+|+....
T Consensus        53 ~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~s  118 (1822)
T KOG4674|consen   53 QLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKS  118 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence            344455555566666666666666677777777777777777766666666666665555555443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.61  E-value=3.9  Score=54.99  Aligned_cols=152  Identities=14%  Similarity=0.193  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH----HHHHHHHHHhhhhccchhH--HHHHH----h---HHHHHHHH
Q 000924          739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI----KQLKQRREQISSSIGEHDE--VQLAF----D---QKDQIEEK  805 (1222)
Q Consensus       739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEI----KQLKKsRKkViAnAa~rAK--IQESi----d---QKEaIqEQ  805 (1222)
                      -|.++|...+..++.+++.-.-.+.+-++-+..+    ++|++....+....+....  .++..    .   +...+-++
T Consensus       435 ~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~  514 (1486)
T PRK04863        435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQ  514 (1486)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            4889999999999988887776666655544433    3444444333332222111  11111    1   01111223


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          806 MKFLRKEADSLRENVIKAE---AAT--------------QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ  868 (1222)
Q Consensus       806 IKaLKKEIDELRkKLkkLe---aEl--------------KELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKE  868 (1222)
                      +-.++.++.+|+..+....   .-+              ..+..-..+....+..+......+.+.|...-..++.|..+
T Consensus       515 ~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~  594 (1486)
T PRK04863        515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQAR  594 (1486)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444443221111   011              12222333444455566666666666666666666666665


Q ss_pred             HHHHHH---HHHHhHHHHHHHHHHH
Q 000924          869 AYDKNQ---HFWKYKDDTKQANDLA  890 (1222)
Q Consensus       869 RDEkNk---eFYqnRr~i~KARELA  890 (1222)
                      ......   .|.++...+.+-++..
T Consensus       595 i~~l~~~ap~W~~a~~al~~L~eq~  619 (1486)
T PRK04863        595 IQRLAARAPAWLAAQDALARLREQS  619 (1486)
T ss_pred             HHHHHHhChHHHhhHHHHHHHHHhc
Confidence            555444   6888888887777764

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=96.60  E-value=1.9  Score=49.01  Aligned_cols=72  Identities=13%  Similarity=0.117  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000924          812 EADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT  883 (1222)
Q Consensus       812 EIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i  883 (1222)
                      .+..+...-..++.++..+..+|++.++.|...++-+......+++...++..|-++-......|-.+-..+
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l  274 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL  274 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            777777777788888889999999999999999999999999999999999888887766665555554443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.55  E-value=1.2  Score=53.90  Aligned_cols=68  Identities=13%  Similarity=0.201  Sum_probs=37.7

Q ss_pred             CChHHHHHHHHHHHhHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          660 YDDENLREQIKAAQSKVDEKTRSRD-----AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDS  727 (1222)
Q Consensus       660 PDDEeLKAKIdeLqKEIeKLnq~Rd-----aI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~  727 (1222)
                      |..+.|..+++.+...+.+....-.     +.+.-+..++.+-..|...+..+=.-++.+...+-.++.++..
T Consensus       161 ~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~  233 (560)
T PF06160_consen  161 PAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKE  233 (560)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Confidence            4567888888888888776654222     1233344445555555544444444445555555555555443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.55  E-value=2.2  Score=49.10  Aligned_cols=116  Identities=14%  Similarity=0.236  Sum_probs=56.8

Q ss_pred             HHHHHHHH---HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q 000924          665 LREQIKAA---QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS---------------------DERSARESLKS  720 (1222)
Q Consensus       665 LKAKIdeL---qKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLRe---------------------E~KqlReer~E  720 (1222)
                      +..|.+++   .++++++...|++....+..++.+.+.|..+.+++..                     -+...|..-..
T Consensus         4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~   83 (319)
T PF09789_consen    4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKK   83 (319)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHH
Confidence            34444443   3455666666776666666666665555555554441                     11233333333


Q ss_pred             HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHHh
Q 000924          721 KRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETL--PLKEEKQIIREIKQLKQRREQI  782 (1222)
Q Consensus       721 KIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSL--SLvEEKKLLKEIKQLKKsRKkV  782 (1222)
                      ...+++.|++.|..+.  ....-+...|+.+.-..+....  .+.|--.+|.++..++....++
T Consensus        84 L~~Ev~~Lrqkl~E~q--GD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL  145 (319)
T PF09789_consen   84 LKEEVEELRQKLNEAQ--GDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL  145 (319)
T ss_pred             HHHHHHHHHHHHHHHh--chHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444432  2333334444443322222221  1256667777777777776555

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.54  E-value=0.64  Score=59.59  Aligned_cols=89  Identities=16%  Similarity=0.190  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK  878 (1222)
Q Consensus       799 KEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYq  878 (1222)
                      ...+..+++.++..+..+...+..+...++++..-+.++...+.+|+...-.+..+-.++..++.+++.+.......++.
T Consensus       404 ~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e  483 (1141)
T KOG0018|consen  404 RAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHE  483 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            44677888888888888888888898889999999999999999999988888888888888888888888888888887


Q ss_pred             hHHHHHHHH
Q 000924          879 YKDDTKQAN  887 (1222)
Q Consensus       879 nRr~i~KAR  887 (1222)
                      .-|.++...
T Consensus       484 ~sR~~~~~e  492 (1141)
T KOG0018|consen  484 GSRRSRKQE  492 (1141)
T ss_pred             cHHHHHHHH
Confidence            766665433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.54  E-value=1.6  Score=53.71  Aligned_cols=39  Identities=23%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 000924          743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS  784 (1222)
Q Consensus       743 EIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViA  784 (1222)
                      .|..+++.|.....+..   .+=++.+.+|+.|+...+.+..
T Consensus       423 pL~~e~r~lk~~~~~~~---~e~~~~~~~ik~~r~~~k~~~~  461 (594)
T PF05667_consen  423 PLIEEYRRLKEKASNRE---SESKQKLQEIKELREEIKEIEE  461 (594)
T ss_pred             HHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555554444322   3334566667666666555533

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.50  E-value=1.1  Score=53.94  Aligned_cols=216  Identities=17%  Similarity=0.214  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHH-------HHHh----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTRSRDA-------IRDD----IQTIRASYKEYAEKLEAAISDE---RSARESLKSKRQEIDS  727 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~Rda-------I~eE----LkalRaERdELiEQLKeLReE~---KqlReer~EKIKEIk~  727 (1222)
                      .+.|...|..++..+.........       +..+    ...+.........++..|+.++   +.+...+..-..++..
T Consensus       174 ve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~  253 (522)
T PF05701_consen  174 VEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELES  253 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346666666666666544332222       2211    1222333333333344444333   2233333344444555


Q ss_pred             HHHHHHhhcc--CCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH----HHHHHHHHHHhhhhccchhHHHHHHhHHHH
Q 000924          728 VQSRINMMKN--AISVDDIDGSIRNMEHRIAHETLPLKEEKQIIRE----IKQLKQRREQISSSIGEHDEVQLAFDQKDQ  801 (1222)
Q Consensus       728 LQeaLnKLRn--AkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKE----IKQLKKsRKkViAnAa~rAKIQESidQKEa  801 (1222)
                      |+..|.....  .....+-...+..+...+.+-..-|.+=|.-|..    +..|+..-..+      +.++.........
T Consensus       254 Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL------~~ELe~~K~el~~  327 (522)
T PF05701_consen  254 LQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESL------RSELEKEKEELER  327 (522)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            5554433221  0111122333444444455555555555555543    33333332222      1222222222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000924          802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD  881 (1222)
Q Consensus       802 IqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr  881 (1222)
                      ++++.......+..|..++...+.++..+...-...+..+..+...++.+...-..+-......+.+.........+.+.
T Consensus       328 lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka  407 (522)
T PF05701_consen  328 LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA  407 (522)
T ss_pred             HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444444443333333333444444444444444444444444444444444444444443


Q ss_pred             HH
Q 000924          882 DT  883 (1222)
Q Consensus       882 ~i  883 (1222)
                      .+
T Consensus       408 ~i  409 (522)
T PF05701_consen  408 AI  409 (522)
T ss_pred             HH
Confidence            33

Several sequences in this family are described as being myosin heavy chain-like.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.42  E-value=1  Score=48.73  Aligned_cols=187  Identities=14%  Similarity=0.236  Sum_probs=96.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Q 000924          668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGS  747 (1222)
Q Consensus       668 KIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDar  747 (1222)
                      ||..++.++.........+..++.....++...-.++..|..++..+-..+..--..+..+...|..+.  +..++..+.
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e--~~~de~er~   79 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE--KRADESERA   79 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH--HHHHHHCHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            566666666666666666666666666666666666655555544444333332222223333333222  345555556


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          748 IRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAAT  827 (1222)
Q Consensus       748 Ia~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaEl  827 (1222)
                      .+.||.+..+..          ..|..|+...+.+...      ..++.-..+.+..++..+-..+......+..+...+
T Consensus        80 ~k~lE~r~~~~e----------eri~~lE~~l~ea~~~------~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki  143 (237)
T PF00261_consen   80 RKVLENREQSDE----------ERIEELEQQLKEAKRR------AEEAERKYEEVERKLKVLEQELERAEERAEAAESKI  143 (237)
T ss_dssp             HHHHHHHHHHHH----------HHHHHCHHHHHHHHHH------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHH----------HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Confidence            666665554321          2233333333322111      112222233444555556666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          828 QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK  872 (1222)
Q Consensus       828 KELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEk  872 (1222)
                      ..+...+..+...|..|......+....+.+-.+|..|..++.+.
T Consensus       144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea  188 (237)
T PF00261_consen  144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA  188 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            666655555556666665555555555566666666666666554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR00634 recN DNA repair protein RecN

Probab=96.39  E-value=1.1  Score=53.86  Aligned_cols=31  Identities=10%  Similarity=0.010  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 000924          861 HWQSLKKQAYDKNQHFWKYKDDTKQANDLAS  891 (1222)
Q Consensus       861 eIkeLRKERDEkNkeFYqnRr~i~KARELAa  891 (1222)
                      .+..|.++..+..+.|..+-..+++.|.-++
T Consensus       347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a  377 (563)
T TIGR00634       347 SLEALEEEVDKLEEELDKAAVALSLIRRKAA  377 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777777777666666666553

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.39  E-value=2.7  Score=52.01  Aligned_cols=30  Identities=3%  Similarity=0.219  Sum_probs=12.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000924          681 RSRDAIRDDIQTIRASYKEYAEKLEAAISD  710 (1222)
Q Consensus       681 q~RdaI~eELkalRaERdELiEQLKeLReE  710 (1222)
                      ++-..+..++..++.++...+.++..|...
T Consensus        29 qr~~qmseev~~L~eEk~~~~~~V~eLE~s   58 (617)
T PF15070_consen   29 QRMQQMSEEVRTLKEEKEHDISRVQELERS   58 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.39  E-value=2.3  Score=53.52  Aligned_cols=17  Identities=35%  Similarity=0.483  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 000924          804 EKMKFLRKEADSLRENV  820 (1222)
Q Consensus       804 EQIKaLKKEIDELRkKL  820 (1222)
                      ..++.+..+++.++...
T Consensus       291 elVk~~qeeLd~lkqt~  307 (1265)
T KOG0976|consen  291 ELVKELQEELDTLKQTR  307 (1265)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34555555555555443

>PRK09039 hypothetical protein; Validated

Probab=96.36  E-value=0.56  Score=53.71  Aligned_cols=70  Identities=17%  Similarity=0.151  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDK  872 (1222)
Q Consensus       803 qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEk  872 (1222)
                      +.++..+..++...+......+..+..|+.++..++.++..|+..+.++..+..++...+..|...+...
T Consensus       115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666666667777777777777777777777777777777777777666655543

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.34  E-value=4.4  Score=50.22  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 000924          859 YKHWQSLKKQAYDKNQHFWKY  879 (1222)
Q Consensus       859 YeeIkeLRKERDEkNkeFYqn  879 (1222)
                      -.++..|..+++.....+-+|
T Consensus       222 ~qE~~~Lq~q~dq~~~~Lqqy  242 (617)
T PF15070_consen  222 SQEAQSLQEQRDQYLGHLQQY  242 (617)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.32  E-value=1.6  Score=57.41  Aligned_cols=192  Identities=11%  Similarity=0.162  Sum_probs=115.2

Q ss_pred             CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000924          740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLREN  819 (1222)
Q Consensus       740 SVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkK  819 (1222)
                      ..+.+..+|..+-....|......-...+..|-..+...+..+..-.+   ..+....+.......+..++.++-.    
T Consensus       796 d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E---~~~k~~~~~~~~i~~l~~~~~e~k~----  868 (1294)
T KOG0962|consen  796 DLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIE---CLQKEVIEQEREISRLINLRNELKE----  868 (1294)
T ss_pred             HHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            455566678888888888665555555555555554333333311100   0011111111111122222222222    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHH
Q 000924          820 VIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQ  899 (1222)
Q Consensus       820 LkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELe  899 (1222)
                         ....+...-.+...+..++..|++....++.+++++-+.+.-|+...++....|++-....+. -++.++..+..+.
T Consensus       869 ---~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~in  944 (1294)
T KOG0962|consen  869 ---EKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDIN  944 (1294)
T ss_pred             ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHH
Confidence               222233333455566688888999999999999999999999999999999988877666554 3343444444443


Q ss_pred             HHHHHHHHHHHHHHhCChHHHH----HHHHhhhhhHhhhhcCCCCCCCCCC
Q 000924          900 HLCVNQVERVLELWNNNDEFRK----EYVNSNIRSTLRRLKTLDGRSLGPD  946 (1222)
Q Consensus       900 elC~aEVEkFMelWN~dkeFRk----DYeKrnl~Sl~rRqlT~DGR~rnPD  946 (1222)
                          .=+..|.....-+..||.    +|-..+++.+..|+..+|+|+++--
T Consensus       945 ----e~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~  991 (1294)
T KOG0962|consen  945 ----EKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIK  991 (1294)
T ss_pred             ----HHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence                446677777777777775    3445678889999999999887543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.30  E-value=1.6  Score=49.36  Aligned_cols=15  Identities=0%  Similarity=-0.097  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 000924          695 ASYKEYAEKLEAAIS  709 (1222)
Q Consensus       695 aERdELiEQLKeLRe  709 (1222)
                      ..|..+..|++-++.
T Consensus       115 d~r~~m~~q~~~vK~  129 (325)
T PF08317_consen  115 DMRLLMDNQFQLVKT  129 (325)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            455666666666655

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.29  E-value=4.4  Score=49.69  Aligned_cols=41  Identities=12%  Similarity=0.249  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924          742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI  782 (1222)
Q Consensus       742 EEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV  782 (1222)
                      +-|...+..|.++|.--.+|..+=+++-.|-.+|.+....+
T Consensus       311 e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i  351 (581)
T KOG0995|consen  311 EKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKI  351 (581)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566666677777777777777777777776665433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.25  E-value=5.8  Score=50.80  Aligned_cols=133  Identities=17%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHH-------HHHHHHHH
Q 000924          810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD----------------EIRQEA-------YKHWQSLK  866 (1222)
Q Consensus       810 KKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~----------------EKRDEA-------YeeIkeLR  866 (1222)
                      -+|+.-++.++..++.....|+.+++.....|..|+++.+++-                +.|-+.       .+.+.++.
T Consensus       402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~  481 (1243)
T KOG0971|consen  402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMN  481 (1243)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555554555556666666666666666665542                111111       22222223


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHh--hhhcCCCCCCCC
Q 000924          867 KQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTL--RRLKTLDGRSLG  944 (1222)
Q Consensus       867 KERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~--rRqlT~DGR~rn  944 (1222)
                      +|+-+-|.   +.-.++++-=|++ +|.+++|+.--.+..|...-+-.+=..||+---+-|-.-.+  -++.+.--++..
T Consensus       482 EQL~Esn~---ele~DLreEld~~-~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q  557 (1243)
T KOG0971|consen  482 EQLQESNR---ELELDLREELDMA-KGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQ  557 (1243)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcC
Confidence            33333222   2223445555554 68888888888888887777777777788755443322221  234444444444


Q ss_pred             CC
Q 000924          945 PD  946 (1222)
Q Consensus       945 PD  946 (1222)
                      |+
T Consensus       558 ~~  559 (1243)
T KOG0971|consen  558 PP  559 (1243)
T ss_pred             CC
Confidence            44

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.13  E-value=5.2  Score=51.65  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=15.0

Q ss_pred             hccccccCCCCCchhHHHHh
Q 000924          493 NMETEFTGEESDDLVCKEVL  512 (1222)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~  512 (1222)
                      ||----.|..-++++|-=+|
T Consensus        45 NmIiGpNGSGKSSiVcAIcL   64 (1072)
T KOG0979|consen   45 NMIIGPNGSGKSSIVCAICL   64 (1072)
T ss_pred             eeEECCCCCCchHHHHHHHH
Confidence            55555667888999998765

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.11  E-value=2  Score=48.69  Aligned_cols=60  Identities=23%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA  869 (1222)
Q Consensus       810 KKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKER  869 (1222)
                      ..++..+|.++..+..++.+..+++.+++.++..+..++.++.+++.++-..|.++.+.+
T Consensus       208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~  267 (325)
T PF08317_consen  208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR  267 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555554445544544444444444454444444444444444444444433

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.10  E-value=2  Score=48.13  Aligned_cols=22  Identities=9%  Similarity=0.049  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTRSR  683 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~R  683 (1222)
                      ...+..++..++.++..+....
T Consensus        76 ~~~~~~~l~~l~~~~~~l~a~~   97 (423)
T TIGR01843        76 ATDVEADAAELESQVLRLEAEV   97 (423)
T ss_pred             cchhhhHHHHHHHHHHHHHHHH
Confidence            3345556666666555554433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.05  E-value=6.3  Score=51.81  Aligned_cols=16  Identities=6%  Similarity=-0.020  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHhCChH
Q 000924          903 VNQVERVLELWNNNDE  918 (1222)
Q Consensus       903 ~aEVEkFMelWN~dke  918 (1222)
                      +.++|++|..-|....
T Consensus       762 q~~LEqe~~~r~~~~~  777 (1317)
T KOG0612|consen  762 QSMLEQEISKRLSLQR  777 (1317)
T ss_pred             HHHHHHHHHHhhhhHH
Confidence            3788888888887764

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.93  E-value=8.8  Score=50.37  Aligned_cols=63  Identities=10%  Similarity=0.227  Sum_probs=29.9

Q ss_pred             HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924          673 QSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM  735 (1222)
Q Consensus       673 qKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL  735 (1222)
                      +.+|....+.-.++...+...+.+-++...+-+.+-.+-+..+...++-+++++.|-..|+.+
T Consensus      1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~F 1483 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDF 1483 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444444444444444444444555555555666666666555555443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.63  Score=58.32  Aligned_cols=70  Identities=7%  Similarity=0.098  Sum_probs=45.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924          666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM  735 (1222)
Q Consensus       666 KAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL  735 (1222)
                      ++...+++..+.+++..+..+..++..++..-.+|.-+.++|.++...+........++++-|+..|+..
T Consensus       649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~  718 (970)
T KOG0946|consen  649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII  718 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3344556666667777777777777777766666666666666666666666666666666666666643

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.90  E-value=4.1  Score=54.29  Aligned_cols=37  Identities=14%  Similarity=0.194  Sum_probs=22.9

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYK  698 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERd  698 (1222)
                      ..+|..+|+.++.+|..+...+..+...+..+..++.
T Consensus       744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~  780 (1353)
T TIGR02680       744 IAELDARLAAVDDELAELARELRALGARQRALADELA  780 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777777777666666666666655555544433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.82  E-value=11  Score=50.19  Aligned_cols=30  Identities=10%  Similarity=0.213  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHh------CChHHHHHHHHh
Q 000924          897 ALQHLCVNQVERVLELWN------NNDEFRKEYVNS  926 (1222)
Q Consensus       897 ELeelC~aEVEkFMelWN------~dkeFRkDYeKr  926 (1222)
                      +.--.+.+++.+|-..+.      ..+.||+.|++-
T Consensus      1062 g~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~ 1097 (1294)
T KOG0962|consen 1062 GEMKQYESQIKKLKQELREKDFKDAEKNYRKALIEL 1097 (1294)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence            333445678888866665      567777777664

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.78  E-value=3.5  Score=44.30  Aligned_cols=88  Identities=15%  Similarity=0.296  Sum_probs=44.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 000924          667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG  746 (1222)
Q Consensus       667 AKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDa  746 (1222)
                      -+|..|+.+|..+...-..+..+.+.++.-..---.-|.........+=..+...-.|++.|+..|.+...  ..-++..
T Consensus        12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~--~~r~~~~   89 (194)
T PF15619_consen   12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE--QERELER   89 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            35555666666555555555555555442222211122222222334444567777788888887766542  3444444


Q ss_pred             HHHHHHHHhh
Q 000924          747 SIRNMEHRIA  756 (1222)
Q Consensus       747 rIa~LE~RIQ  756 (1222)
                      +|...+..+.
T Consensus        90 klk~~~~el~   99 (194)
T PF15619_consen   90 KLKDKDEELL   99 (194)
T ss_pred             HHHHHHHHHH
Confidence            4444444444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.72  E-value=0.89  Score=56.80  Aligned_cols=99  Identities=14%  Similarity=0.317  Sum_probs=58.4

Q ss_pred             HHHHHHHhH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhccCCCHH
Q 000924          667 EQIKAAQSK-VDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL---KSKRQEIDSVQSRINMMKNAISVD  742 (1222)
Q Consensus       667 AKIdeLqKE-IeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer---~EKIKEIk~LQeaLnKLRnAkSVE  742 (1222)
                      .-+..+..+ |.++...|.+|...+..++.+++.-..+|..++++++.++...   .++++++..-|+.|          
T Consensus       543 ~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L----------  612 (717)
T PF10168_consen  543 QATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKL----------  612 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            334444444 4566667888877777777777777777777776665555433   55566665555544          


Q ss_pred             HHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHHHH
Q 000924          743 DIDGSIRNMEHRIAH--ETLPLKEEKQIIREIKQLKQR  778 (1222)
Q Consensus       743 EIDarIa~LE~RIQT--gSLSLvEEKKLLKEIKQLKKs  778 (1222)
                        ..|+..|=..++.  -.||. .||++.+|+..++..
T Consensus       613 --~~R~~~vl~~l~~~~P~LS~-AEr~~~~EL~~~~~~  647 (717)
T PF10168_consen  613 --MKRVDRVLQLLNSQLPVLSE-AEREFKKELERMKDQ  647 (717)
T ss_pred             --HHHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHHHH
Confidence              3334433333322  22444 358888887777665

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.59  E-value=2.5  Score=48.29  Aligned_cols=30  Identities=13%  Similarity=-0.016  Sum_probs=14.4

Q ss_pred             CChHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000924          660 YDDENLREQIKAAQSKVDEKTRSRDAIRDD  689 (1222)
Q Consensus       660 PDDEeLKAKIdeLqKEIeKLnq~RdaI~eE  689 (1222)
                      |..+-+.---.+|.+-|.+-+..=.++.++
T Consensus        63 P~LElY~~sC~EL~~~I~egr~~~~~~E~e   92 (312)
T smart00787       63 PLLELYQFSCKELKKYISEGRDLFKEIEEE   92 (312)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445444444555555555544433333333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.58  E-value=2.8  Score=49.16  Aligned_cols=32  Identities=16%  Similarity=0.228  Sum_probs=22.0

Q ss_pred             ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 000924          661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQT  692 (1222)
Q Consensus       661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELka  692 (1222)
                      |+..+.+.+..++.++..+...+..|.++++.
T Consensus        91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~  122 (457)
T TIGR01000        91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS  122 (457)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777777777777777666666655543

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=95.58  E-value=2.9  Score=48.31  Aligned_cols=134  Identities=16%  Similarity=0.266  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHHHhhcCC--CChH----HHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHH
Q 000924          739 ISVDDIDGSIRNMEHRIAHET--LPLK----EEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKE  812 (1222)
Q Consensus       739 kSVEEIDarIa~LE~RIQTgS--LSLv----EEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKE  812 (1222)
                      ..+.+||+||..||..|.+++  |+.-    .-+-|+.-|..|......+-          .  ...+.|..+++.|..+
T Consensus       209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~----------~--~~Ld~i~~rl~~L~~~  276 (388)
T PF04912_consen  209 ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLD----------P--AKLDSIERRLKSLLSE  276 (388)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcC----------H--HHHHHHHHHHHHHHHH
Confidence            478999999999999999943  2222    25678888888888744441          1  1356777888888888


Q ss_pred             HHHHHHHHHHH------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhH
Q 000924          813 ADSLRENVIKA------EAATQAVKKLH---REESEKLKRLLGQFKAADEIR---QEAYKHWQSLKKQAYDKNQHFWKYK  880 (1222)
Q Consensus       813 IDELRkKLkkL------eaElKELsKK~---DEIkaEI~ELQeElkAL~EKR---DEAYeeIkeLRKERDEkNkeFYqnR  880 (1222)
                      ++.|.+.....      ..++.+|+..+   +.+..-|..|-++++.|....   ...+..+..|-.....+...+-+++
T Consensus       277 ~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~  356 (388)
T PF04912_consen  277 LEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWE  356 (388)
T ss_pred             HHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88776543322      12233332222   222234444444444333322   2334444444444444444444444


Q ss_pred             HHHH
Q 000924          881 DDTK  884 (1222)
Q Consensus       881 r~i~  884 (1222)
                      ..+.
T Consensus       357 ~~L~  360 (388)
T PF04912_consen  357 ELLN  360 (388)
T ss_pred             HHHH
Confidence            4433

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.57  E-value=1.3  Score=45.34  Aligned_cols=43  Identities=19%  Similarity=0.263  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI  732 (1222)
Q Consensus       690 LkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaL  732 (1222)
                      |..+|.+.+....+...+.++.+.+......+=.+|.+|+..+
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~   44 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKN   44 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777777777777777766777665544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.50  E-value=11  Score=48.04  Aligned_cols=14  Identities=21%  Similarity=0.238  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHh
Q 000924          901 LCVNQVERVLELWN  914 (1222)
Q Consensus       901 lC~aEVEkFMelWN  914 (1222)
                      .|..+-+++++..+
T Consensus       440 ea~~eker~~e~l~  453 (775)
T PF10174_consen  440 EALREKERLQERLE  453 (775)
T ss_pred             HHHHHHHHHHHHHH
Confidence            46677777777653

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.40  E-value=12  Score=47.81  Aligned_cols=9  Identities=22%  Similarity=0.483  Sum_probs=6.3

Q ss_pred             CCCCCCccC
Q 000924          945 PDEEAPLIR  953 (1222)
Q Consensus       945 PDEkPpvip  953 (1222)
                      |++..||--
T Consensus       456 ~~~~CPvCg  464 (908)
T COG0419         456 AGEKCPVCG  464 (908)
T ss_pred             CCCCCCCCC
Confidence            778877743

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.36  E-value=14  Score=48.56  Aligned_cols=61  Identities=16%  Similarity=0.236  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID  726 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk  726 (1222)
                      +..|..++++++.-+.-+.+.+....+    .+++-....++.+.-+.+..+.+.++...|++++
T Consensus      1421 ~~~l~~~~ae~eq~~~~v~ea~~~ase----A~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~ 1481 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASE----AQQSAQRALEQANASRSQMEESNRELRNLIQQVR 1481 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666655544443333222    2222233334444444444444444444444443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.27  E-value=7.4  Score=44.61  Aligned_cols=47  Identities=6%  Similarity=0.026  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHH
Q 000924          663 ENLREQIKAAQSKVDEKTRSRDAIRDDI-----QTIRASYKEYAEKLEAAIS  709 (1222)
Q Consensus       663 EeLKAKIdeLqKEIeKLnq~RdaI~eEL-----kalRaERdELiEQLKeLRe  709 (1222)
                      .+|++.|.+=+..+.++.+.-..-+--+     .+--..|..+..|++-++.
T Consensus        73 ~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~  124 (312)
T smart00787       73 KELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKT  124 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3777777776666665554433222111     1112445555555555544

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.06  E-value=9.3  Score=44.95  Aligned_cols=10  Identities=20%  Similarity=0.471  Sum_probs=4.0

Q ss_pred             HHHHHHHHHH
Q 000924          771 EIKQLKQRRE  780 (1222)
Q Consensus       771 EIKQLKKsRK  780 (1222)
                      +|.+|+..+.
T Consensus       255 ~l~~l~~~l~  264 (498)
T TIGR03007       255 RIEALEKQLD  264 (498)
T ss_pred             HHHHHHHHHH
Confidence            3444444333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.83  E-value=13  Score=45.14  Aligned_cols=41  Identities=10%  Similarity=0.295  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924          742 DDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI  782 (1222)
Q Consensus       742 EEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV  782 (1222)
                      +.|...|..|.+++....++..+=+.+.+|=.+|-+....+
T Consensus       347 ~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i  387 (622)
T COG5185         347 KALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKI  387 (622)
T ss_pred             HHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            33445677777777777777777777777777776665433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=94.77  E-value=19  Score=46.89  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh
Q 000924          764 EEKQIIREIKQLKQRREQISSS  785 (1222)
Q Consensus       764 EEKKLLKEIKQLKKsRKkViAn  785 (1222)
                      .+|.++.|-.+|...-+.+...
T Consensus       437 ~~K~L~~E~ekl~~e~~t~~~s  458 (1195)
T KOG4643|consen  437 LEKKLQFELEKLLEETSTVTRS  458 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            4566666666666555444333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=94.76  E-value=17  Score=46.33  Aligned_cols=66  Identities=11%  Similarity=0.126  Sum_probs=37.5

Q ss_pred             ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID  726 (1222)
Q Consensus       661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk  726 (1222)
                      |...++..+.+++.+|..|...-..+..+++++++-+..+.+++++..-++...+..+...++++-
T Consensus        93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs  158 (1265)
T KOG0976|consen   93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS  158 (1265)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            444556666666666665555555555556666666666666666555555555555544444444

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.73  E-value=0.87  Score=50.03  Aligned_cols=84  Identities=14%  Similarity=0.193  Sum_probs=42.8

Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          790 DEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA  869 (1222)
Q Consensus       790 AKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKER  869 (1222)
                      ..|...+...+....-|..+++|++.|..+....-+++..|+.-++.+...|..+..+.....+....+|+++..|+.+.
T Consensus        18 ~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~i   97 (230)
T PF10146_consen   18 NEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEI   97 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444333333445566666666666655555555555555555545554444444444444444455444444444


Q ss_pred             HHHH
Q 000924          870 YDKN  873 (1222)
Q Consensus       870 DEkN  873 (1222)
                      +++.
T Consensus        98 n~~R  101 (230)
T PF10146_consen   98 NELR  101 (230)
T ss_pred             HHHH
Confidence            4433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK10869 recombination and repair protein; Provisional

Probab=94.72  E-value=7.5  Score=47.33  Aligned_cols=30  Identities=10%  Similarity=0.058  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000924          861 HWQSLKKQAYDKNQHFWKYKDDTKQANDLA  890 (1222)
Q Consensus       861 eIkeLRKERDEkNkeFYqnRr~i~KARELA  890 (1222)
                      .+..|.++..+..+.|......+.++|.-+
T Consensus       342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a  371 (553)
T PRK10869        342 DLETLALAVEKHHQQALETAQKLHQSRQRY  371 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555444

>PF13514 AAA_27: AAA domain

Probab=94.66  E-value=17  Score=47.45  Aligned_cols=11  Identities=36%  Similarity=0.785  Sum_probs=6.5

Q ss_pred             hhccccccccC
Q 000924          108 AELGDQKFESG  118 (1222)
Q Consensus       108 ~~~~~~~~~~~  118 (1222)
                      -++|..-|..|
T Consensus       112 gdlg~~Lf~ag  122 (1111)
T PF13514_consen  112 GDLGQLLFSAG  122 (1111)
T ss_pred             hHHHHHHHHhc
Confidence            34666666655

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=94.64  E-value=4.1  Score=52.72  Aligned_cols=43  Identities=19%  Similarity=0.148  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 000924          863 QSLKKQAYDKNQHFWKYKDDTKQANDLASKG--DREALQHLCVNQ  905 (1222)
Q Consensus       863 keLRKERDEkNkeFYqnRr~i~KARELAakg--dveELeelC~aE  905 (1222)
                      .++|+..-.+++.|..-+.+.-+.-+|.++-  -+-.|++||..-
T Consensus      1301 ~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~h 1345 (1439)
T PF12252_consen 1301 QKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEAH 1345 (1439)
T ss_pred             HHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHHh
Confidence            3445555555666666666665666665553  367889999864

There is little literature describing the family.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=94.60  E-value=6.4  Score=49.44  Aligned_cols=57  Identities=12%  Similarity=0.314  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKS  720 (1222)
Q Consensus       664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~E  720 (1222)
                      .|++.|..|+.+|+..++.=.+|+..+..+-.-...+..+|..++.+..+++..+..
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~  478 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQN  478 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            577788888888887777777777777666554446666666666665555554433

; GO: 0016021 integral to membrane

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.55  E-value=12  Score=48.96  Aligned_cols=69  Identities=12%  Similarity=0.170  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000924          815 SLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT  883 (1222)
Q Consensus       815 ELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i  883 (1222)
                      ++.++++.++..+..+.+..+.+...|+++...+..+....++.-.....+..+-++.|..|..-+.-+
T Consensus       406 elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql  474 (1141)
T KOG0018|consen  406 ELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL  474 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            344455555555556666666666666666666555555555555555555555566666665555544

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.44  E-value=12  Score=43.14  Aligned_cols=136  Identities=14%  Similarity=0.218  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHH-------HHH
Q 000924          740 SVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL-------RKE  812 (1222)
Q Consensus       740 SVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaL-------KKE  812 (1222)
                      ..+.|..+|+.||.          |-++|-.|..+|...-..+...  .+.-|.+-..|....+.+|..|       ..+
T Consensus       161 ~le~Lq~Klk~LEe----------EN~~LR~Ea~~L~~et~~~Eek--EqqLv~dcv~QL~~An~qia~LseELa~k~Ee  228 (306)
T PF04849_consen  161 QLEALQEKLKSLEE----------ENEQLRSEASQLKTETDTYEEK--EQQLVLDCVKQLSEANQQIASLSEELARKTEE  228 (306)
T ss_pred             hHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHhhccHH--HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence            35778888887775          3344445555555433222110  0000111111222223333333       333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000924          813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQAN  887 (1222)
Q Consensus       813 IDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KAR  887 (1222)
                      ....+.+|..|-.++-.+..++..+-.+-.+|+..+.+..+....+-.++..|+..+.+...-|...+..+++-|
T Consensus       229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR  303 (306)
T PF04849_consen  229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR  303 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444445555555555666666666666777777777777777777788888887777777777666665433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.31  E-value=13  Score=42.96  Aligned_cols=42  Identities=24%  Similarity=0.367  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000924          663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDE  711 (1222)
Q Consensus       663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~  711 (1222)
                      +.+..+|..|+++       -..+..++...|.+...|...++.|+...
T Consensus        23 ~~l~~~~~sL~qe-------n~~Lk~El~~ek~~~~~L~~e~~~lr~~s   64 (310)
T PF09755_consen   23 EQLRKRIESLQQE-------NRVLKRELETEKARCKHLQEENRALREAS   64 (310)
T ss_pred             HHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666665554       33455677778888888888888887753

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.27  E-value=12  Score=42.25  Aligned_cols=20  Identities=15%  Similarity=0.197  Sum_probs=14.2

Q ss_pred             hHHHHHHHHHHHhHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTR  681 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq  681 (1222)
                      ...++.++..++.++..+..
T Consensus        83 l~~l~~~~~~l~a~~~~l~~  102 (423)
T TIGR01843        83 AAELESQVLRLEAEVARLRA  102 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45688888888877766544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=93.97  E-value=23  Score=44.63  Aligned_cols=110  Identities=15%  Similarity=0.231  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----
Q 000924          805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK----  880 (1222)
Q Consensus       805 QIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR----  880 (1222)
                      +|+.+..+++.||+++.....-+.++...-..++.++..-.+++..+.-+..++-.++..+.+.+.+++..|..--    
T Consensus       588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~  667 (786)
T PF05483_consen  588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKS  667 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence            3445555555555555444444555555555555666666666666666666666777777777777776665422    


Q ss_pred             -------HHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHh
Q 000924          881 -------DDTKQANDLASK--GDREALQHLCVNQVERVLELWN  914 (1222)
Q Consensus       881 -------r~i~KARELAak--gdveELeelC~aEVEkFMelWN  914 (1222)
                             ..+.++|-.|..  +..++..--|+-.+--+++|--
T Consensus       668 ~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALME  710 (786)
T PF05483_consen  668 ISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALME  710 (786)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence                   224555555544  5667777778776666666653

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=93.89  E-value=21  Score=43.78  Aligned_cols=121  Identities=12%  Similarity=0.136  Sum_probs=71.4

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000924          739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRE  818 (1222)
Q Consensus       739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRk  818 (1222)
                      ..+.+|+.+|-.|-|++-|      .|+-+=..|..++......         ++.++.   .|..=-+.+.+.+..++.
T Consensus       358 ~~lkDLd~~~~aLs~rld~------qEqtL~~rL~e~~~e~~~~---------~r~~le---kl~~~q~e~~~~l~~v~e  419 (531)
T PF15450_consen  358 RQLKDLDDHILALSWRLDL------QEQTLNLRLSEAKNEWESD---------ERKSLE---KLDQWQNEMEKHLKEVQE  419 (531)
T ss_pred             HHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHH---------HHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            4777888888888888655      2444444455554432211         111221   222122344556666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000924          819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDT  883 (1222)
Q Consensus       819 KLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i  883 (1222)
                      +++.+...+..|+.+++-++.+++-.      ++.+-..-|.++.++|.++..+....--.+...
T Consensus       420 KVd~LpqqI~~vs~Kc~~~Ksd~d~k------IdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~  478 (531)
T PF15450_consen  420 KVDSLPQQIEEVSDKCDLHKSDSDTK------IDTEGKAREREVGAVRQELATLLSSVQLLKEDN  478 (531)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhhhhhh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            77777777777777777766665544      445556667888888998888777655444443

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.88  E-value=14  Score=41.85  Aligned_cols=63  Identities=10%  Similarity=0.256  Sum_probs=27.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          668 QIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS  730 (1222)
Q Consensus       668 KIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQe  730 (1222)
                      +|..++++...+...-..|..++..+..+++++..++..+.++++.++..+....+.|...+.
T Consensus        39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~  101 (265)
T COG3883          39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE  101 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333444444444444444444444444444444444444444444443333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.70  E-value=12  Score=43.49  Aligned_cols=36  Identities=11%  Similarity=0.189  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924          700 YAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM  735 (1222)
Q Consensus       700 LiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL  735 (1222)
                      ..++.+.|..+...++..+.+-..+++-||..+.+.
T Consensus        77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~  112 (319)
T PF09789_consen   77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ  112 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence            334444444444444444455555555555555444

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=93.66  E-value=8.8  Score=47.59  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL  844 (1222)
Q Consensus       801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~EL  844 (1222)
                      ++..+++.++.+|.+++.+++..        .-|++|+.++.-|
T Consensus       321 ~le~~l~~~~~~leel~~kL~~~--------sDYeeIK~ELsiL  356 (629)
T KOG0963|consen  321 ALEKELKAKISELEELKEKLNSR--------SDYEEIKKELSIL  356 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHH
Confidence            33444444444444444443332        2345555555544

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.55  E-value=25  Score=43.54  Aligned_cols=181  Identities=17%  Similarity=0.232  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH-----HHHHHHHHHhhcCCCChHHHHHH
Q 000924          694 RASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDID-----GSIRNMEHRIAHETLPLKEEKQI  768 (1222)
Q Consensus       694 RaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEID-----arIa~LE~RIQTgSLSLvEEKKL  768 (1222)
                      -++-..|..++-.|..++|++|..+..+..|.+.|-+....++...+--|++     ..|+.+-+          .|-++
T Consensus        99 aakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~Kf----------RE~Rl  168 (772)
T KOG0999|consen   99 AAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKF----------REARL  168 (772)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH----------HHHHH
Confidence            3555667777888888888888888888888777766555543211111221     22333222          24556


Q ss_pred             HHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          769 IREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLR---KEADSLRENVIKAEAATQAVKKLHREESEKLKRLL  845 (1222)
Q Consensus       769 LKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLK---KEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQ  845 (1222)
                      |.+-+.|+..      |.              .++.++..||   -|+..++-.++-+..++.-++..+       .+..
T Consensus       169 lseYSELEEE------NI--------------sLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~-------ee~~  221 (772)
T KOG0999|consen  169 LSEYSELEEE------NI--------------SLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQL-------EEAI  221 (772)
T ss_pred             HHHHHHHHHh------cc--------------hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            6666555543      11              2233333332   345555555555555554444332       2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 000924          846 GQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVN  925 (1222)
Q Consensus       846 eElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeK  925 (1222)
                      .-..-+..+..+|..-++.=|+++..+.+.+-+|+..                                 ++-   -|..
T Consensus       222 ~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~---------------------------------e~~---~~~n  265 (772)
T KOG0999|consen  222 RLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNA---------------------------------EDI---SSLN  265 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcch---------------------------------hhh---hhhh
Confidence            2122334466677777666666655554443333211                                 111   1445


Q ss_pred             hhhhhHhhhhcCCCCCCCCCCCC
Q 000924          926 SNIRSTLRRLKTLDGRSLGPDEE  948 (1222)
Q Consensus       926 rnl~Sl~rRqlT~DGR~rnPDEk  948 (1222)
                      .++.|+++ -...||-.-|||-+
T Consensus       266 ~l~~sldg-k~~eDga~pn~d~e  287 (772)
T KOG0999|consen  266 HLLFSLDG-KFGEDGAEPNNDPE  287 (772)
T ss_pred             hhheeccc-ccccccCCCCCChh
Confidence            56667766 67789998888877

>TIGR00634 recN DNA repair protein RecN

Probab=93.46  E-value=14  Score=44.77  Aligned_cols=38  Identities=13%  Similarity=0.155  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924          698 KEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM  735 (1222)
Q Consensus       698 dELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL  735 (1222)
                      ..+..+++.++.+++.++....+..++++-++..|..+
T Consensus       164 ~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~EL  201 (563)
T TIGR00634       164 RELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEEL  201 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=93.41  E-value=26  Score=44.62  Aligned_cols=19  Identities=21%  Similarity=0.366  Sum_probs=12.0

Q ss_pred             CCChHHHHHHHHHHHhHHH
Q 000924          659 RYDDENLREQIKAAQSKVD  677 (1222)
Q Consensus       659 RPDDEeLKAKIdeLqKEIe  677 (1222)
                      .|..+.|+.+|+.|..+++
T Consensus       454 ~~~~~~L~e~IeKLk~E~d  472 (762)
T PLN03229        454 KPSELALNEMIEKLKKEID  472 (762)
T ss_pred             CCCChHHHHHHHHHHHHHH
Confidence            4555666677776666665

>PF13166 AAA_13: AAA domain

Probab=93.37  E-value=25  Score=43.10  Aligned_cols=12  Identities=17%  Similarity=0.199  Sum_probs=6.8

Q ss_pred             CChHHHHHHHHH
Q 000924          660 YDDENLREQIKA  671 (1222)
Q Consensus       660 PDDEeLKAKIde  671 (1222)
                      |..++++.+|..
T Consensus       265 ~l~~~~~~~l~~  276 (712)
T PF13166_consen  265 PLSEERKERLEK  276 (712)
T ss_pred             CCcHHHHHHHHH
Confidence            445566666654

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.35  E-value=18  Score=41.19  Aligned_cols=64  Identities=19%  Similarity=0.398  Sum_probs=33.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRI  732 (1222)
Q Consensus       669 IdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaL  732 (1222)
                      |...+.++..+......|..+++.+-++-.++..+++.++.+..+.+..+....++|+.+.+.|
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I   96 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI   96 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555555555555555555555555555555444444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.34  E-value=18  Score=46.28  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=16.9

Q ss_pred             CCccchhHHhhhccccccCCCCCch
Q 000924          482 KDDHRSKELEENMETEFTGEESDDL  506 (1222)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~  506 (1222)
                      .+||++.+|-+---+--||...++|
T Consensus       455 dn~~~kEeLlrV~l~~~~gn~p~tl  479 (970)
T KOG0946|consen  455 DNDQLKEELLRVPLAVDTGNDPDTL  479 (970)
T ss_pred             HhHHHHHHHHhhhhcccCCCCchHH
Confidence            3567777777766666677665555

>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair []

Probab=93.30  E-value=0.71  Score=49.52  Aligned_cols=25  Identities=36%  Similarity=0.594  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhH
Q 000924         1090 TRAALRAQKEAEQKEKEREKRARKK 1114 (1222)
Q Consensus      1090 a~A~~raqKEAEkKeKErEKKAKKK 1114 (1222)
                      ++.+.+.+|+.+++.++.+++.|+.
T Consensus       154 ~k~eek~~keeekr~~eE~~~~k~~  178 (216)
T PF11600_consen  154 AKEEEKRKKEEEKRKKEEEKRLKKE  178 (216)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            5556677777777777766555544

P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.15  E-value=28  Score=43.02  Aligned_cols=15  Identities=27%  Similarity=0.497  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHhC
Q 000924          901 LCVNQVERVLELWNN  915 (1222)
Q Consensus       901 lC~aEVEkFMelWN~  915 (1222)
                      .++++|++.+++...
T Consensus       439 kaqaevdrlLeilke  453 (654)
T KOG4809|consen  439 KAQAEVDRLLEILKE  453 (654)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            346778887777643

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.14  E-value=2.6  Score=42.45  Aligned_cols=24  Identities=17%  Similarity=0.520  Sum_probs=18.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000924          885 QANDLASKGDREALQHLCVNQVERVL  910 (1222)
Q Consensus       885 KARELAakgdveELeelC~aEVEkFM  910 (1222)
                      .+.+|  +.|+..|+.+|..||+..|
T Consensus        97 ~veEL--~~Dv~DlK~myr~Qi~~lv  120 (120)
T PF12325_consen   97 EVEEL--RADVQDLKEMYREQIDQLV  120 (120)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHhC
Confidence            45556  7889999999999998653

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=93.10  E-value=0.026  Score=69.06  Aligned_cols=60  Identities=13%  Similarity=0.201  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ  868 (1222)
Q Consensus       809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKE  868 (1222)
                      ++.++..++.++..++.++.....+++.+.-++..|.+++.++...+.....++..||..
T Consensus       361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~  420 (713)
T PF05622_consen  361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRET  420 (713)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555545555554555554555555555555555555555555444443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.03  E-value=9.8  Score=38.19  Aligned_cols=30  Identities=17%  Similarity=0.150  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          827 TQAVKKLHREESEKLKRLLGQFKAADEIRQ  856 (1222)
Q Consensus       827 lKELsKK~DEIkaEI~ELQeElkAL~EKRD  856 (1222)
                      ...|.+.+.++...+..|..+++-|+.+.+
T Consensus       100 k~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen  100 KEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334555555555555566666665555543

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF13166 AAA_13: AAA domain

Probab=93.00  E-value=29  Score=42.66  Aligned_cols=6  Identities=83%  Similarity=1.237  Sum_probs=3.0

Q ss_pred             CCCCCC
Q 000924          324 GSGKSS  329 (1222)
Q Consensus       324 ~~~~~~  329 (1222)
                      |||||.
T Consensus        26 GsGKSt   31 (712)
T PF13166_consen   26 GSGKST   31 (712)
T ss_pred             CCCHHH
Confidence            455554

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.99  E-value=15  Score=39.68  Aligned_cols=17  Identities=24%  Similarity=0.255  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHhh
Q 000924          719 KSKRQEIDSVQSRINMM  735 (1222)
Q Consensus       719 ~EKIKEIk~LQeaLnKL  735 (1222)
                      ..-+.-|++|+..+..+
T Consensus        23 ~~NL~lIksLKeei~em   39 (201)
T PF13851_consen   23 LNNLELIKSLKEEIAEM   39 (201)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444455555554444

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=92.96  E-value=11  Score=49.70  Aligned_cols=92  Identities=10%  Similarity=0.259  Sum_probs=42.2

Q ss_pred             CCChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 000924          659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK--  736 (1222)
Q Consensus       659 RPDDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLR--  736 (1222)
                      .|+...++.+|+++.+.  +... ...+...++.    --.+.++++...++.++|+..+..-=++++.+++.|..++  
T Consensus        22 ~p~~~~iq~~l~~~~~~--~~~~-~k~~~~~l~~----tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~   94 (1109)
T PRK10929         22 APDEKQITQELEQAKAA--KTPA-QAEIVEALQS----ALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDE   94 (1109)
T ss_pred             CCCHHHHHHHHHHhhcC--CChh-hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence            36777899999887663  1111 1112222211    1112222333333333444444333333444444443221  


Q ss_pred             -----cCCCHHHHHHHHHHHHHHhhc
Q 000924          737 -----NAISVDDIDGSIRNMEHRIAH  757 (1222)
Q Consensus       737 -----nAkSVEEIDarIa~LE~RIQT  757 (1222)
                           ...|..+|+.++.....+++.
T Consensus        95 ~~~~~~~~s~~~Leq~l~~~~~~L~~  120 (1109)
T PRK10929         95 PRSVPPNMSTDALEQEILQVSSQLLE  120 (1109)
T ss_pred             cccccccCCHHHHHHHHHHHHHHHHH
Confidence                 114678888877766666443

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=92.88  E-value=2.7  Score=52.43  Aligned_cols=75  Identities=12%  Similarity=0.160  Sum_probs=44.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          795 AFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY  870 (1222)
Q Consensus       795 SidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERD  870 (1222)
                      .......+.++|..|..++..++..+..++.....+...+.+....+..++.++..+...-.+.+ ...++|+++.
T Consensus       232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~  306 (670)
T KOG0239|consen  232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLH  306 (670)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            33334455556777777777777777777777777776666666666666555555554444444 3334444333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=92.79  E-value=15  Score=46.42  Aligned_cols=44  Identities=16%  Similarity=0.255  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          834 HREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFW  877 (1222)
Q Consensus       834 ~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFY  877 (1222)
                      ...-++.+..|..+++.+...-.+....+...+.++-......+
T Consensus       414 ~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLA  457 (717)
T PF09730_consen  414 SREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELA  457 (717)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33334567777777777777777777777666666655444333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.70  E-value=34  Score=42.73  Aligned_cols=62  Identities=10%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             eecCCCCChHHHHHHHHHHHhHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          654 LVKVPRYDDENLREQIKAAQSKVD---EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARE  716 (1222)
Q Consensus       654 fVKvpRPDDEeLKAKIdeLqKEIe---KLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlRe  716 (1222)
                      -+.+.. .+|++-++|..+-.+.=   .+..++........-+..+..++..++.....++..|+.
T Consensus       158 ~Is~~~-~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~  222 (754)
T TIGR01005       158 AIEFRS-EDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRA  222 (754)
T ss_pred             EEEEec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444 36677777754433321   111222223333333455555566666555555555554

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=92.63  E-value=41  Score=43.57  Aligned_cols=50  Identities=12%  Similarity=0.256  Sum_probs=26.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924          685 AIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM  734 (1222)
Q Consensus       685 aI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnK  734 (1222)
                      .+-..+...|.....+..++.++.-++.+.+-...+-+.+-+.||..+..
T Consensus       348 ~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq  397 (980)
T KOG0980|consen  348 QLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ  397 (980)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33333444455555566666666665555555555555555555554433

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]

Probab=92.55  E-value=41  Score=43.37  Aligned_cols=86  Identities=7%  Similarity=0.096  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000924          827 TQAVKKLHREESEKLKRLLGQFKAA-DEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQ  905 (1222)
Q Consensus       827 lKELsKK~DEIkaEI~ELQeElkAL-~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aE  905 (1222)
                      +.++.|.-.+++..|..+.++++-+ .++|-+...-|.+-.+++...-..||..+..-+.....              ++
T Consensus       672 ~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~--------------ae  737 (988)
T KOG2072|consen  672 IEELEKERKELQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAI--------------AE  737 (988)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH--------------HH
Confidence            4444555555555555555555533 36666777777666676666667888766554443333              45


Q ss_pred             HHHHHHHHhCChHHHHHHHHh
Q 000924          906 VERVLELWNNNDEFRKEYVNS  926 (1222)
Q Consensus       906 VEkFMelWN~dkeFRkDYeKr  926 (1222)
                      -|.-|..|+.-.-|+.+|.+-
T Consensus       738 ~e~~vk~k~~l~rm~~d~~~f  758 (988)
T KOG2072|consen  738 RESAVKDKKRLSRMYDDRDKF  758 (988)
T ss_pred             HHHHHHHHHHHHHHhhhHHHH
Confidence            577789999888888888764

>PRK11281 hypothetical protein; Provisional

Probab=92.47  E-value=46  Score=44.31  Aligned_cols=106  Identities=10%  Similarity=0.195  Sum_probs=49.6

Q ss_pred             CCChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924          659 RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQT---IRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM  735 (1222)
Q Consensus       659 RPDDEeLKAKIdeLqKEIeKLnq~RdaI~eELka---lRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL  735 (1222)
                      .|+...++++|+++.+. +........+...++.   .-.+.+....+..+++.+...+-..+.+-.++++.+++.....
T Consensus        35 ~p~~~~iq~~l~~~~~~-~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~  113 (1113)
T PRK11281         35 LPTEADVQAQLDALNKQ-KLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE  113 (1113)
T ss_pred             CCCHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence            46777788888887662 2111111111111111   1122222233333333333333333333333344333311110


Q ss_pred             --c--cCCCHHHHHHHHHHHHHHhhcCCCChHHH
Q 000924          736 --K--NAISVDDIDGSIRNMEHRIAHETLPLKEE  765 (1222)
Q Consensus       736 --R--nAkSVEEIDarIa~LE~RIQTgSLSLvEE  765 (1222)
                        .  ...|..+|+.++.+++..++...-.|.+.
T Consensus       114 ~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~  147 (1113)
T PRK11281        114 TRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEY  147 (1113)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0  12577889999998888777765555555

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.46  E-value=36  Score=42.50  Aligned_cols=32  Identities=19%  Similarity=0.248  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          702 EKLEAAISDERSARESLKSKRQEIDSVQSRIN  733 (1222)
Q Consensus       702 EQLKeLReE~KqlReer~EKIKEIk~LQeaLn  733 (1222)
                      .+|..+..++...+..+......++.++..+.
T Consensus       237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~  268 (754)
T TIGR01005       237 QQLAELNTELSRARANRAAAEGTADSVKKALQ  268 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55666666666666666555555666655553

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=92.33  E-value=29  Score=41.02  Aligned_cols=25  Identities=12%  Similarity=0.223  Sum_probs=19.0

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTRSRDAI  686 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~RdaI  686 (1222)
                      ...++.++..++.++..+...+..+
T Consensus        99 ~~~~~~~~~~~~~~~~rL~a~~~~~  123 (457)
T TIGR01000        99 KQLLEQQLDNLKDQKKSLDTLKQSI  123 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888888888888887776654

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=92.29  E-value=28  Score=40.77  Aligned_cols=117  Identities=16%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHH-HhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          766 KQIIREIKQLKQRRE-QISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRL  844 (1222)
Q Consensus       766 KKLLKEIKQLKKsRK-kViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~EL  844 (1222)
                      |.+|.++.+-..+.+ +..-|++....++..+.   ..++-+...+.|+..+.+++++++.+.--...+++..+..+-.+
T Consensus       207 k~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~---KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~l  283 (391)
T KOG1850|consen  207 KIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLA---KSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQL  283 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            445555555554443 33346655555555543   23445667788888888888888888777788888888777776


Q ss_pred             HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCH
Q 000924          845 LGQFKA-------ADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDR  895 (1222)
Q Consensus       845 QeElkA-------L~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdv  895 (1222)
                      ..+...       +..+++.+-.=.++|+.+|.+.|.          .++++.+++..
T Consensus       284 a~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~----------~~~~~e~~v~~  331 (391)
T KOG1850|consen  284 AEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNK----------KLEDLEAQVSA  331 (391)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH----------HHHHHhcccch
Confidence            654332       223333333333444555555444          56677555443

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.24  E-value=41  Score=42.61  Aligned_cols=20  Identities=40%  Similarity=0.619  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 000924          763 KEEKQIIREIKQLKQRREQI  782 (1222)
Q Consensus       763 vEEKKLLKEIKQLKKsRKkV  782 (1222)
                      .+||++=+.+.+|...-..+
T Consensus       190 ~~eke~~~~~~ql~~~~q~~  209 (716)
T KOG4593|consen  190 NEEKELDRQHKQLQEENQKI  209 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45566666677777665544

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.14  E-value=2.7  Score=47.83  Aligned_cols=34  Identities=12%  Similarity=0.016  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          833 LHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK  866 (1222)
Q Consensus       833 K~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLR  866 (1222)
                      .++...-++...+++++.+..+.+-+.+++..||
T Consensus       100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen  100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.12  E-value=14  Score=46.60  Aligned_cols=85  Identities=14%  Similarity=0.221  Sum_probs=44.0

Q ss_pred             HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH--HHHHHH
Q 000924          672 AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD--IDGSIR  749 (1222)
Q Consensus       672 LqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEE--IDarIa  749 (1222)
                      +++.+..++..+..-..++..++.+|..+.+....|.++++...+.-....+.++.+...++...-..|.+|  .-++++
T Consensus       563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~  642 (717)
T PF10168_consen  563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELE  642 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            344444455555555566666667777776666666666655555555555555554333322111134444  333455


Q ss_pred             HHHHHhh
Q 000924          750 NMEHRIA  756 (1222)
Q Consensus       750 ~LE~RIQ  756 (1222)
                      .|..+++
T Consensus       643 ~~~~~l~  649 (717)
T PF10168_consen  643 RMKDQLQ  649 (717)
T ss_pred             HHHHHHH
Confidence            5555443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10869 recombination and repair protein; Provisional

Probab=91.75  E-value=17  Score=44.37  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=26.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhh
Q 000924          894 DREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLR  933 (1222)
Q Consensus       894 dveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~r  933 (1222)
                      +..+|+..+..--+.++.+=..-...|+.+-+....++..
T Consensus       342 ~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~  381 (553)
T PRK10869        342 DLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITE  381 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666666667777888887776666543

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=91.70  E-value=25  Score=40.70  Aligned_cols=27  Identities=15%  Similarity=0.017  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          690 IQTIRASYKEYAEKLEAAISDERSARE  716 (1222)
Q Consensus       690 LkalRaERdELiEQLKeLReE~KqlRe  716 (1222)
                      +.-+..+..++..++.....++..|+.
T Consensus       173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~  199 (444)
T TIGR03017       173 ALWFVQQIAALREDLARAQSKLSAYQQ  199 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.70  E-value=22  Score=38.39  Aligned_cols=100  Identities=18%  Similarity=0.339  Sum_probs=53.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHH
Q 000924          667 EQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDG  746 (1222)
Q Consensus       667 AKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDa  746 (1222)
                      +.|..|..+|..++..-......+..+..+-..|.+-|..+..+...++..+..-.+.-..|+    .++  .....++.
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~----~~k--~rl~~~ek  100 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ----NLK--ARLKELEK  100 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHH
Confidence            345555555555555444445555555555555555555555554444444433322222222    222  24456678


Q ss_pred             HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924          747 SIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI  782 (1222)
Q Consensus       747 rIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV  782 (1222)
                      .|..|+|.-+.          +.....+|.+.|..+
T Consensus       101 ~l~~Lk~e~ev----------L~qr~~kle~ErdeL  126 (201)
T PF13851_consen  101 ELKDLKWEHEV----------LEQRFEKLEQERDEL  126 (201)
T ss_pred             HHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence            88888886653          445666777777655

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=91.61  E-value=25  Score=38.75  Aligned_cols=27  Identities=33%  Similarity=0.357  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000924          863 QSLKKQAYDKNQHFWKYKDDTKQANDL  889 (1222)
Q Consensus       863 keLRKERDEkNkeFYqnRr~i~KAREL  889 (1222)
                      ..|..+........-+.+..+..|..+
T Consensus       230 ~~l~~~~~~~~~~L~~a~~~L~~a~~l  256 (264)
T PF06008_consen  230 QELSEQQNEVSETLKEAEDLLDQANDL  256 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.49  E-value=45  Score=41.50  Aligned_cols=48  Identities=10%  Similarity=0.219  Sum_probs=20.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          681 RSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSV  728 (1222)
Q Consensus       681 q~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~L  728 (1222)
                      ..|+++...+..+..+++.|...+-.+.-+.......+..+..+++.+
T Consensus       339 ~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l  386 (581)
T KOG0995|consen  339 LERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSL  386 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444433334444444444444443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.42  E-value=4  Score=46.50  Aligned_cols=115  Identities=19%  Similarity=0.243  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000924          806 MKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQ  885 (1222)
Q Consensus       806 IKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~K  885 (1222)
                      +..+.+++..+..+...+.+++.++.+...++..++..++.+...+.+...+.+...+.+.-++....+..-    .+..
T Consensus        45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~----sl~~  120 (314)
T PF04111_consen   45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERD----SLKN  120 (314)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence            344455555555555555556666666666666777777777777776666666666666655554333211    1111


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHhhhhcCCCCCCCC
Q 000924          886 ANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLG  944 (1222)
Q Consensus       886 ARELAakgdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~rRqlT~DGR~rn  944 (1222)
                      ..            .+..+++++-...=-=++.|+      |  |.+-..+|=.|=.+|
T Consensus       121 q~------------~~~~~~L~~L~ktNv~n~~F~------I--~hdG~fGTINGlRLG  159 (314)
T PF04111_consen  121 QY------------EYASNQLDRLRKTNVYNDTFH------I--WHDGPFGTINGLRLG  159 (314)
T ss_dssp             HH------------HHHHHHHHCHHT--TTTTT--------E--EEETTEEEETTEEE-
T ss_pred             HH------------HHHHHHHHHHHhcCchhceee------E--eecCCeeeECCeeec
Confidence            11            223445555444434466774      2  224466666665555

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=91.35  E-value=1.8  Score=51.37  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHh
Q 000924         1092 AALRAQKEAEQKEKEREKRARKKE 1115 (1222)
Q Consensus      1092 A~~raqKEAEkKeKErEKKAKKK~ 1115 (1222)
                      +++|+++-|++|....++|+++++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~  389 (429)
T PRK00247        366 RQERAAAMARARARRAAVKAKKKG  389 (429)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhcc
Confidence            445555555554444555565553

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.33  E-value=3.5  Score=44.74  Aligned_cols=72  Identities=14%  Similarity=0.114  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN  873 (1222)
Q Consensus       799 KEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkN  873 (1222)
                      ...++.++..++.+++.++.+.+.   ...++..++.+....+.+|.++++.|.++-..+-.++..|+.+.+...
T Consensus        95 lp~le~el~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884         95 VPDLENQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555666666665554442   344555566666666666777677776666666666666666555443

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=91.22  E-value=2.3  Score=40.57  Aligned_cols=27  Identities=15%  Similarity=0.292  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          801 QIEEKMKFLRKEADSLRENVIKAEAAT  827 (1222)
Q Consensus       801 aIqEQIKaLKKEIDELRkKLkkLeaEl  827 (1222)
                      .+.++.+.+..+++.++.+.+.+..++
T Consensus        33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I   59 (108)
T PF02403_consen   33 ELDQERRELQQELEELRAERNELSKEI   59 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            334444444444555444444443333

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=91.10  E-value=19  Score=38.18  Aligned_cols=89  Identities=19%  Similarity=0.336  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--------------HH
Q 000924          802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD-EIRQEAYKHWQS--------------LK  866 (1222)
Q Consensus       802 IqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~-EKRDEAYeeIke--------------LR  866 (1222)
                      .......+++||.+++.++...-++.+.+..+.-..+..+.+....+.... +.+.+||++...              ||
T Consensus        25 ~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr  104 (159)
T PF05384_consen   25 ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLR  104 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666666666666666666666666666666666655554433 345556655544              55


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHH
Q 000924          867 KQAYDKNQHFWKYKDDTKQANDLA  890 (1222)
Q Consensus       867 KERDEkNkeFYqnRr~i~KARELA  890 (1222)
                      ..||.+....-+....+.+|..|+
T Consensus       105 ~rRD~LErrl~~l~~tierAE~l~  128 (159)
T PF05384_consen  105 ERRDELERRLRNLEETIERAENLV  128 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555556666663

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.06  E-value=16  Score=39.41  Aligned_cols=27  Identities=15%  Similarity=0.395  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          805 KMKFLRKEADSLRENVIKAEAATQAVK  831 (1222)
Q Consensus       805 QIKaLKKEIDELRkKLkkLeaElKELs  831 (1222)
                      ++..|+..+..++..+...+..+.++.
T Consensus        71 r~~~l~~~i~~~~~~i~~~r~~l~~~~   97 (302)
T PF10186_consen   71 RLERLRERIERLRKRIEQKRERLEELR   97 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=90.83  E-value=16  Score=40.07  Aligned_cols=161  Identities=13%  Similarity=0.199  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHh
Q 000924          703 KLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQI  782 (1222)
Q Consensus       703 QLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkV  782 (1222)
                      ++-=|+.+++.....+..|..+|=.|+..|...+  .....-+..|..|.....+.++.|.   ..-.|+.+.+..    
T Consensus        11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~--~~l~~~~~~~~~l~~~~~~K~~ELE---~ce~ELqr~~~E----   81 (202)
T PF06818_consen   11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELR--AELRNKESQIQELQDSLRTKQLELE---VCENELQRKKNE----   81 (202)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHhhHhHH---HhHHHHHHHhCH----
Confidence            4455666777788888888888888888776655  2555556667666666655544332   111222221111    


Q ss_pred             hhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          783 SSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAE---AATQAVKKLHREESEKLKRLLGQFKAADEIRQEAY  859 (1222)
Q Consensus       783 iAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLe---aElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAY  859 (1222)
                                      .+-+.+++..|..++..||..+..+.   ...-.+ ...++.+..-..-......+...-+.+-
T Consensus        82 ----------------a~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l-~~~deak~~~~~~~~~~~~l~~e~erL~  144 (202)
T PF06818_consen   82 ----------------AELLREKLGQLEAELAELREELACAGRLKRQCQLL-SESDEAKAQRQAGEDELGSLRREVERLR  144 (202)
T ss_pred             ----------------HHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccc-cccchhHHhhccccccchhHHHHHHHHH
Confidence                            11122233334444444444333320   000000 0111111100000122445555666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000924          860 KHWQSLKKQAYDKNQHFWKYKDDTKQANDL  889 (1222)
Q Consensus       860 eeIkeLRKERDEkNkeFYqnRr~i~KAREL  889 (1222)
                      .++..+|..++.....|-+-|+.+..=|+-
T Consensus       145 aeL~~er~~~e~q~~~Fe~ER~~W~eEKek  174 (202)
T PF06818_consen  145 AELQRERQRREEQRSSFEQERRTWQEEKEK  174 (202)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            777778888888888888888888765554

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=90.78  E-value=46  Score=40.36  Aligned_cols=34  Identities=9%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHH
Q 000924          664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASY  697 (1222)
Q Consensus       664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaER  697 (1222)
                      .+..++..+.-.+.++.+.+..++.++..++.++
T Consensus       106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~  139 (511)
T PF09787_consen  106 SLSSELAVLKIRLQELDQELRRLRRQLEELQNEK  139 (511)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5566666666666666666666666665554333

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=90.58  E-value=49  Score=40.39  Aligned_cols=89  Identities=19%  Similarity=0.288  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          767 QIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG  846 (1222)
Q Consensus       767 KLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQe  846 (1222)
                      +.+.||++-.+.--+.       .+|..++.+|+.=.+++..||.++...-.      ..++-|+.+-+.-..++-.|++
T Consensus       433 ry~~eiQqKnksvsqc-------lEmdk~LskKeeeverLQ~lkgelEkat~------SALdlLkrEKe~~EqefLslqe  499 (527)
T PF15066_consen  433 RYMTEIQQKNKSVSQC-------LEMDKTLSKKEEEVERLQQLKGELEKATT------SALDLLKREKETREQEFLSLQE  499 (527)
T ss_pred             HHHHHHHHhhhHHHHH-------HHHHHHhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777666663322       23344555665444566677766663221      1222333333333455666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          847 QFKAADEIRQEAYKHWQSLKKQAYD  871 (1222)
Q Consensus       847 ElkAL~EKRDEAYeeIkeLRKERDE  871 (1222)
                      +++.-..   +-.+++++|+-.+.+
T Consensus       500 EfQk~ek---enl~ERqkLKs~leK  521 (527)
T PF15066_consen  500 EFQKHEK---ENLEERQKLKSRLEK  521 (527)
T ss_pred             HHHHHHH---hhHHHHHHHHHHHHH
Confidence            6554332   234455555554444

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=90.50  E-value=2.4  Score=52.52  Aligned_cols=16  Identities=25%  Similarity=0.341  Sum_probs=10.2

Q ss_pred             hcCCCCCCCCCCCCCC
Q 000924          935 LKTLDGRSLGPDEEAP  950 (1222)
Q Consensus       935 qlT~DGR~rnPDEkPp  950 (1222)
                      -..-||-.++|+++-.
T Consensus       133 ~e~~d~p~~~~~~eq~  148 (811)
T KOG4364|consen  133 VENVDAPVLEDDSEQC  148 (811)
T ss_pred             ccccCCcccCchhhhh
Confidence            3455777777776654

>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins

Probab=90.27  E-value=0.13  Score=62.38  Aligned_cols=75  Identities=15%  Similarity=0.255  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000924          800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREE-SEKLKRLLGQFKAADEIRQEAYKHW-QSLKKQAYDKNQ  874 (1222)
Q Consensus       800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEI-kaEI~ELQeElkAL~EKRDEAYeeI-keLRKERDEkNk  874 (1222)
                      .....++..|+.++..|...|+-...+++.--.....+ ...|..+..+++-|.+.+.+....+ ..+|.+..++++
T Consensus       224 ~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd  300 (619)
T PF03999_consen  224 EEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWD  300 (619)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33445566777777777777666655554221111111 1345555555555554444443332 344444444444

One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=89.98  E-value=35  Score=37.67  Aligned_cols=79  Identities=20%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000924          803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKD  881 (1222)
Q Consensus       803 qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr  881 (1222)
                      ..++..|-.++..+...++.+...-..+..+.+....+|..+..+++.+.-.-.-+-.....|-+++|.+....+..+.
T Consensus       108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~  186 (205)
T KOG1003|consen  108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKE  186 (205)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence            3455566666666667666666666666666666667777777766666544444445555666666665555444433

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.91  E-value=8.2  Score=42.70  Aligned_cols=75  Identities=17%  Similarity=0.162  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          799 KDQIEEKMKFLR---KEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKN  873 (1222)
Q Consensus       799 KEaIqEQIKaLK---KEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkN  873 (1222)
                      +..|...+..+.   +=|.+++++++.|..+.......+..|+.+|+.|..-++.+...|.+..+.+..|+.++..+.
T Consensus        17 k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk   94 (230)
T PF10146_consen   17 KNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK   94 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555544   447888888888888888888888888888888888888888888888777776666544433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains

Probab=89.72  E-value=42  Score=38.24  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWK  878 (1222)
Q Consensus       844 LQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYq  878 (1222)
                      ...++..+-.....+|..+.+|+.-..+..+ ||+
T Consensus       289 ~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~-FY~  322 (342)
T cd08915         289 SLDPREEALQDLEASYKKYLELKENLNEGSK-FYN  322 (342)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH
Confidence            3444556666677777777777777777666 553

This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=89.70  E-value=19  Score=37.33  Aligned_cols=64  Identities=25%  Similarity=0.331  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLK  866 (1222)
Q Consensus       803 qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLR  866 (1222)
                      +.++..+.++++.+...+..+...+..+...+............+++.+.......+.++..|+
T Consensus        87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555555555555555555555555555

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=89.66  E-value=43  Score=40.46  Aligned_cols=94  Identities=13%  Similarity=0.281  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000924          739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRE  818 (1222)
Q Consensus       739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRk  818 (1222)
                      .+++++..+.+.|.+          ||++++++++.|.+....+                    ...+..+..+..    
T Consensus       176 ~~~~~~~~e~~~l~~----------eE~~L~q~lk~le~~~~~l--------------------~~~l~e~~~~~~----  221 (447)
T KOG2751|consen  176 VSEEDLLKELKNLKE----------EEERLLQQLEELEKEEAEL--------------------DHQLKELEFKAE----  221 (447)
T ss_pred             cchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH----
Confidence            467777776666653          7888888888888875554                    112222222222    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQA  869 (1222)
Q Consensus       819 KLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKER  869 (1222)
                         .+.++-..+.++|...+-++.+.+++++++..+|.=+-..++.||+.-
T Consensus       222 ---~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktN  269 (447)
T KOG2751|consen  222 ---RLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTN  269 (447)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence               222334455667777778888889999999999998888888888753

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.64  E-value=58  Score=39.74  Aligned_cols=101  Identities=16%  Similarity=0.165  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH
Q 000924          799 KDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD---EIRQ----EAYKHWQSLKKQAYD  871 (1222)
Q Consensus       799 KEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~---EKRD----EAYeeIkeLRKERDE  871 (1222)
                      +.....+|+++.+-+...+..|-+.-.++.+|.|+.+-+...++--..=.+.+-   .+.|    .||.-+..|-.--.+
T Consensus       384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~e  463 (521)
T KOG1937|consen  384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCME  463 (521)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            445556777777777777777777666777777666666555554433222221   2222    333333333333333


Q ss_pred             HHHHHHHhHHHHHHHHHHHhcCCHHHHH
Q 000924          872 KNQHFWKYKDDTKQANDLASKGDREALQ  899 (1222)
Q Consensus       872 kNkeFYqnRr~i~KARELAakgdveELe  899 (1222)
                      +....-..=+..+++++|..+=..+++.
T Consensus       464 i~E~i~~tg~~~revrdlE~qI~~E~~k  491 (521)
T KOG1937|consen  464 ILEMIRETGALKREVRDLESQIYVEEQK  491 (521)
T ss_pred             HHHHHHHcchHHHHHHHHHHHHhHHHHH
Confidence            3333344445567788886555444443

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=89.64  E-value=42  Score=42.87  Aligned_cols=12  Identities=17%  Similarity=0.296  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHH
Q 000924          713 SARESLKSKRQE  724 (1222)
Q Consensus       713 qlReer~EKIKE  724 (1222)
                      .+...+++|+.+
T Consensus       558 ~Lk~ei~kki~e  569 (762)
T PLN03229        558 KLKAEINKKFKE  569 (762)
T ss_pred             hhhHHHHHHHHH
Confidence            345555555555

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=89.55  E-value=51  Score=42.08  Aligned_cols=46  Identities=9%  Similarity=0.106  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000924          691 QTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMK  736 (1222)
Q Consensus       691 kalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLR  736 (1222)
                      +.-..+=..|..++.+|..++++.|..+.....|.+.|......++
T Consensus        23 ~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~   68 (717)
T PF09730_consen   23 QESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELR   68 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666777888888888888888888888777777766665554

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=89.50  E-value=12  Score=45.11  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924          800 DQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY  879 (1222)
Q Consensus       800 EaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqn  879 (1222)
                      +...+....+..+.+++....+.++...+.+..++.+++.++..++++++...+.-..+.+..+.|+.++.+++...-..
T Consensus       350 en~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~  429 (493)
T KOG0804|consen  350 ENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA  429 (493)
T ss_pred             HhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            33444555667778888888888888888888899999999999999999999888888888888888888876633221


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCChHHH
Q 000924          880 KDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFR  920 (1222)
Q Consensus       880 Rr~i~KARELAakgdveELeelC~aEVEkFMelWN~dkeFR  920 (1222)
                      +    .++|    ..+.+|+    .|+--.|-..-+...|-
T Consensus       430 ~----~s~d----~~I~dLq----EQlrDlmf~le~qqklk  458 (493)
T KOG0804|consen  430 L----GSKD----EKITDLQ----EQLRDLMFFLEAQQKLK  458 (493)
T ss_pred             H----HHHH----HHHHHHH----HHHHhHheehhhhhhhh
Confidence            1    1222    2355555    56777777776665554

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=89.29  E-value=38  Score=37.16  Aligned_cols=38  Identities=26%  Similarity=0.220  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG  846 (1222)
Q Consensus       809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQe  846 (1222)
                      |-+++..|..+-.++..+++.+.+++.++..+-..|+.
T Consensus       100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~  137 (193)
T PF14662_consen  100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQR  137 (193)
T ss_pred             HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHH
Confidence            33444444444444444444444444444444444433

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=89.17  E-value=74  Score=40.37  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          841 LKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ  874 (1222)
Q Consensus       841 I~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk  874 (1222)
                      |..|.+-.+.+.+++.+-..+++.|+.+.-+++.
T Consensus       228 l~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn  261 (660)
T KOG4302|consen  228 LDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWN  261 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566666666667777777776666544

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=89.06  E-value=6.1  Score=40.71  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          802 IEEKMKFLRKEADSLRENVIKAEAATQ  828 (1222)
Q Consensus       802 IqEQIKaLKKEIDELRkKLkkLeaElK  828 (1222)
                      +..+|..|+.++.+++..++.++.++.
T Consensus        77 ld~ei~~L~~el~~l~~~~k~l~~eL~  103 (169)
T PF07106_consen   77 LDAEIKELREELAELKKEVKSLEAELA  103 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444433333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A

Probab=88.72  E-value=41  Score=36.86  Aligned_cols=19  Identities=21%  Similarity=0.653  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 000924          766 KQIIREIKQLKQRREQISS  784 (1222)
Q Consensus       766 KKLLKEIKQLKKsRKkViA  784 (1222)
                      +.+|.++..|+..|..+..
T Consensus       147 ~~ll~~l~~l~~eR~~~~~  165 (296)
T PF13949_consen  147 RELLNKLEELKKEREELLE  165 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5789999999999987644

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=88.61  E-value=81  Score=40.07  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000924          699 EYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMM  735 (1222)
Q Consensus       699 ELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKL  735 (1222)
                      -|+.++..|...+.++|...+++++++..++..+.++
T Consensus       100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l  136 (660)
T KOG4302|consen  100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKL  136 (660)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667888888888899999999999988888877665

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=88.57  E-value=6.1  Score=40.71  Aligned_cols=19  Identities=26%  Similarity=0.331  Sum_probs=8.5

Q ss_pred             CChHHHHHHHHHHHHHHHH
Q 000924          760 LPLKEEKQIIREIKQLKQR  778 (1222)
Q Consensus       760 LSLvEEKKLLKEIKQLKKs  778 (1222)
                      ++..+-..+=.+|.+|+..
T Consensus        69 ~s~eel~~ld~ei~~L~~e   87 (169)
T PF07106_consen   69 PSPEELAELDAEIKELREE   87 (169)
T ss_pred             CCchhHHHHHHHHHHHHHH
Confidence            4444444444444444444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=88.57  E-value=1e+02  Score=41.26  Aligned_cols=18  Identities=11%  Similarity=0.320  Sum_probs=13.4

Q ss_pred             CHHHHHHHHHHHHHHhhc
Q 000924          740 SVDDIDGSIRNMEHRIAH  757 (1222)
Q Consensus       740 SVEEIDarIa~LE~RIQT  757 (1222)
                      ...+...++..++.+++.
T Consensus       145 ~~~~~~~~l~~i~~~L~~  162 (1109)
T PRK10929        145 QQTEARRQLNEIERRLQT  162 (1109)
T ss_pred             hHHHHHHHHHHHHHHHhC
Confidence            337777888888887777

>PF13514 AAA_27: AAA domain

Probab=88.54  E-value=97  Score=40.91  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=15.4

Q ss_pred             hHHHHHHHHhhhh--hHhhhhcCCC---CCCCCCCCCCCc
Q 000924          917 DEFRKEYVNSNIR--STLRRLKTLD---GRSLGPDEEAPL  951 (1222)
Q Consensus       917 keFRkDYeKrnl~--Sl~rRqlT~D---GR~rnPDEkPpv  951 (1222)
                      ..||.+|.-..+.  |-.-+.+|..   +-+.++|..+|+
T Consensus       971 ~~~r~~~~p~vl~~As~~f~~LT~G~Y~~l~~d~d~~~~~ 1010 (1111)
T PF13514_consen  971 ERYREERQPPVLARASEYFSRLTGGRYSRLRVDEDGDKPV 1010 (1111)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhCCCCceeeeccccCccc
Confidence            3455555443322  2233344442   334566655543

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=88.44  E-value=44  Score=36.84  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHH
Q 000924          866 KKQAYDKNQHFWKYKDDTKQANDL  889 (1222)
Q Consensus       866 RKERDEkNkeFYqnRr~i~KAREL  889 (1222)
                      .++...+....-.....+..|+.+
T Consensus       226 ~~k~~~l~~~~~~~~~~L~~a~~~  249 (264)
T PF06008_consen  226 EKKKQELSEQQNEVSETLKEAEDL  249 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444445555555554

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=88.27  E-value=77  Score=39.42  Aligned_cols=66  Identities=15%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          809 LRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ  874 (1222)
Q Consensus       809 LKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk  874 (1222)
                      .-++|+++...+..+-..+.+=...|..++..+..+.+.+..+..+..+..++++.||+.--+...
T Consensus       352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are  417 (570)
T COG4477         352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARE  417 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555566777888888888888888889999999999999986544333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.15  E-value=80  Score=39.48  Aligned_cols=179  Identities=12%  Similarity=0.155  Sum_probs=78.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCHH
Q 000924          666 REQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNA---ISVD  742 (1222)
Q Consensus       666 KAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnA---kSVE  742 (1222)
                      ....+.++.+|..+...-.+...+.-....==-++.++...|..++..+....+.-+.||+.+++++++.+..   ....
T Consensus         7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~   86 (772)
T KOG0999|consen    7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD   86 (772)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3445555556655554444433332111111112333444455555555666666666777777777765410   0111


Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHH----HHHHHHHHH
Q 000924          743 DIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL----RKEADSLRE  818 (1222)
Q Consensus       743 EIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaL----KKEIDELRk  818 (1222)
                      .+    .+=|..+|-   |-..|--++..|-.|+...++.+....   ..++..+........++..    -.+.--+|.
T Consensus        87 g~----e~EesLLqE---SaakE~~yl~kI~eleneLKq~r~el~---~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~  156 (772)
T KOG0999|consen   87 GE----EREESLLQE---SAAKEEYYLQKILELENELKQLRQELT---NVQEENERLEKVHSDLKESNAAVEDQRRRLRD  156 (772)
T ss_pred             ch----hhHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence            11    111222222   234555667777666655555433111   1111111111111111111    111222333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          819 NVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEI  854 (1222)
Q Consensus       819 KLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EK  854 (1222)
                      +|+.++-.-.-+-..|.++..+=..||++.-.|+.-
T Consensus       157 elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~s  192 (772)
T KOG0999|consen  157 ELKEYKFREARLLSEYSELEEENISLQKQVSNLRQS  192 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh
Confidence            333332222234456777777777777766666543

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=88.14  E-value=73  Score=39.02  Aligned_cols=12  Identities=17%  Similarity=0.122  Sum_probs=6.8

Q ss_pred             CCCCCCCCCCCC
Q 000924          937 TLDGRSLGPDEE  948 (1222)
Q Consensus       937 T~DGR~rnPDEk  948 (1222)
                      +-||+.+-||--
T Consensus       233 ~~~g~~~rPDvi  244 (475)
T PRK10361        233 NDARSRMQPDVI  244 (475)
T ss_pred             CCCCCeeCCeEE
Confidence            446666556643

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=88.04  E-value=46  Score=36.53  Aligned_cols=18  Identities=22%  Similarity=0.505  Sum_probs=9.1

Q ss_pred             CHHHHHHHHHHHHHHhhc
Q 000924          740 SVDDIDGSIRNMEHRIAH  757 (1222)
Q Consensus       740 SVEEIDarIa~LE~RIQT  757 (1222)
                      .++.|..+|..|+..++-
T Consensus        93 ~l~~L~~ri~~L~~~i~e  110 (247)
T PF06705_consen   93 RLDSLNDRIEALEEEIQE  110 (247)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444455555555554443

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=87.81  E-value=96  Score=40.02  Aligned_cols=89  Identities=9%  Similarity=0.307  Sum_probs=51.1

Q ss_pred             ccceeccCCcee--eecCCCCChHHHHHHHHHHHhHHHHHHHHHHHH------------------------------HHh
Q 000924          642 IGVEVVKQPFYF--LVKVPRYDDENLREQIKAAQSKVDEKTRSRDAI------------------------------RDD  689 (1222)
Q Consensus       642 ~~~qv~K~~FyY--fVKvpRPDDEeLKAKIdeLqKEIeKLnq~RdaI------------------------------~eE  689 (1222)
                      +.+++..+.+-|  |.-+|-|-....+..++.|..+-..+.+.-..+                              ...
T Consensus       758 VvVqi~dRq~RYSrfPeiPLFGrAAREqrLE~L~~eRD~v~EqhA~~sFDvQK~QRlh~~FsqFvg~HLavAF~~dPE~~  837 (1480)
T COG3096         758 VVVKIADRQWRYSRFPEIPLFGRAAREQRLESLHAERDVLSERHATLSFDVQKTQRLHQAFSRFIGSHLAVAFEADPEAE  837 (1480)
T ss_pred             eEEEechhhhhhhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            344555555522  344555666677777776666554333221111                              233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          690 IQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQS  730 (1222)
Q Consensus       690 LkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQe  730 (1222)
                      +..++.+|+++...|.....+..++|..++.-...+..|..
T Consensus       838 ~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~Lnk  878 (1480)
T COG3096         838 IRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNR  878 (1480)
T ss_pred             HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence            45567888888888888777777777777555444444433

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=87.58  E-value=20  Score=45.12  Aligned_cols=47  Identities=13%  Similarity=0.213  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          805 KMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAA  851 (1222)
Q Consensus       805 QIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL  851 (1222)
                      .++.+......++++++.+..++.++.+++.+++..+..++.+++..
T Consensus       228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~  274 (670)
T KOG0239|consen  228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEA  274 (670)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444445455544444444444444443333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=87.55  E-value=15  Score=37.29  Aligned_cols=77  Identities=23%  Similarity=0.357  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          800 DQIEEKMKFLRKEADSLRENVIKAEAAT---QAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF  876 (1222)
Q Consensus       800 EaIqEQIKaLKKEIDELRkKLkkLeaEl---KELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeF  876 (1222)
                      ..++.++..|.++.+.++.++-.+-.+.   .+..+++..++.++..|+.+++++=+..-+.-+...+||.-...+..-|
T Consensus        33 ~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my  112 (120)
T PF12325_consen   33 ASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY  112 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555554443333   3445666677777777777777777777777777777777666655533

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=87.45  E-value=1.6  Score=54.82  Aligned_cols=37  Identities=43%  Similarity=0.559  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 000924         1074 AQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKKE 1115 (1222)
Q Consensus      1074 ak~a~eRKkk~aeKaaa~A~~raqKEAEkKeKErEKKAKKK~ 1115 (1222)
                      .+++++|++++.+-++++-+.+++     |+||++|+.|+|.
T Consensus       242 r~eeEEer~~ee~E~~~eEak~kk-----Kekekek~er~Ka  278 (1064)
T KOG1144|consen  242 RREEEEERRREEEEAQEEEAKEKK-----KEKEKEKKERKKA  278 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhh
Confidence            344444444444444444233333     4445555555553

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=87.20  E-value=52  Score=36.30  Aligned_cols=66  Identities=18%  Similarity=0.329  Sum_probs=37.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924          669 IKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM  734 (1222)
Q Consensus       669 IdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnK  734 (1222)
                      |+-|..++++....-+.-..+|-.+|....++..+++....+...++..+..|--+++.....|..
T Consensus        12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr   77 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQR   77 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHH
Confidence            444444443333333333444555566666666666666666666666666666666665555544

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.88  E-value=9.2  Score=40.47  Aligned_cols=54  Identities=20%  Similarity=0.222  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          803 EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQ  856 (1222)
Q Consensus       803 qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRD  856 (1222)
                      ..+|..|..++..++.++..+..++++..+-++.+++++..|+-++..+.++..
T Consensus       115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~  168 (194)
T PF08614_consen  115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLR  168 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666677777777777777777777666666666666666665555544433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=86.87  E-value=5.5  Score=47.05  Aligned_cols=8  Identities=25%  Similarity=0.032  Sum_probs=3.1

Q ss_pred             HHhhhhhH
Q 000924          924 VNSNIRST  931 (1222)
Q Consensus       924 eKrnl~Sl  931 (1222)
                      .+.++.|+
T Consensus        12 ~~aiiiSv   19 (387)
T PRK09510         12 KRAIIISV   19 (387)
T ss_pred             hhHHHHHH
Confidence            33333443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=86.49  E-value=43  Score=36.71  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHH
Q 000924          808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ-----HFWKYKDD  882 (1222)
Q Consensus       808 aLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk-----eFYqnRr~  882 (1222)
                      .|..++..+..++..++...+.+.+.++..+.+|.+|+.++..+...+.+..--+...-+.+...-.     ..-+.+.-
T Consensus        53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~R  132 (251)
T PF11932_consen   53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQER  132 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence            3344444444444444444555555555666666666666666666666666555555554444222     11122333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 000924          883 TKQANDLASKGDREALQHLCVNQVERVLELW  913 (1222)
Q Consensus       883 i~KARELAakgdveELeelC~aEVEkFMelW  913 (1222)
                      +..-+.+....++.-.        |+|..+|
T Consensus       133 l~~L~~~l~~~dv~~~--------ek~r~vl  155 (251)
T PF11932_consen  133 LARLRAMLDDADVSLA--------EKFRRVL  155 (251)
T ss_pred             HHHHHHhhhccCCCHH--------HHHHHHH
Confidence            4555666666664433        5566555

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=86.24  E-value=13  Score=39.66  Aligned_cols=51  Identities=16%  Similarity=0.242  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEA  858 (1222)
Q Consensus       808 aLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEA  858 (1222)
                      .+..|...++.++..+..+++.|.+++..+..++..+++.+.++-..+++|
T Consensus       101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA  151 (161)
T TIGR02894       101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA  151 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444555555555555555555555555555555554

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=86.16  E-value=74  Score=37.04  Aligned_cols=110  Identities=18%  Similarity=0.299  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHHHH-----HHHHHHHHHHHhhh-hccchhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000924          744 IDGSIRNMEHRIAHETLPLKEEKQIIR-----EIKQLKQRREQISS-SIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLR  817 (1222)
Q Consensus       744 IDarIa~LE~RIQTgSLSLvEEKKLLK-----EIKQLKKsRKkViA-nAa~rAKIQESidQKEaIqEQIKaLKKEIDELR  817 (1222)
                      -..++..|+..+.+..-+|.| |-++-     +.+|-..+.+.+.. |...++++...++..+.++++|-.|..|--=|+
T Consensus       156 aesK~nsLe~elh~trdaLrE-KtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLr  234 (305)
T PF14915_consen  156 AESKFNSLEIELHHTRDALRE-KTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLR  234 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344578888888777766654 44332     22333333332222 333466777777777777777766655555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          818 ENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEI  854 (1222)
Q Consensus       818 kKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EK  854 (1222)
                      .+++.++.+...-.+-+-.++.....+..++++=.++
T Consensus       235 QQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ek  271 (305)
T PF14915_consen  235 QQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEK  271 (305)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            5555544433333333444444444444444443333

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=86.07  E-value=51  Score=38.84  Aligned_cols=54  Identities=11%  Similarity=0.179  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          804 EKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQE  857 (1222)
Q Consensus       804 EQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDE  857 (1222)
                      +++..+..++..++.++.++..+.+.++.-+.+...+++.|.+++..+..++++
T Consensus       266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee  319 (359)
T PF10498_consen  266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE  319 (359)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=86.04  E-value=46  Score=37.98  Aligned_cols=84  Identities=7%  Similarity=0.183  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000924          801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK  880 (1222)
Q Consensus       801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR  880 (1222)
                      .+...|+.+..++..++..+..+...-..|..|++.-+.++.-.++++++|...|=..+++...|..++.+.-..|+..=
T Consensus       166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kf  245 (267)
T PF10234_consen  166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKF  245 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777777777777778888888888888888999999998888888888888888888777666544


Q ss_pred             HHHH
Q 000924          881 DDTK  884 (1222)
Q Consensus       881 r~i~  884 (1222)
                      |++.
T Consensus       246 RNl~  249 (267)
T PF10234_consen  246 RNLD  249 (267)
T ss_pred             HhHH
Confidence            4443

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=85.83  E-value=14  Score=39.55  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924          813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKY  879 (1222)
Q Consensus       813 IDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqn  879 (1222)
                      ...++..+..+..++..+.+++.++..+|..... -+.-...|.+..+++.+|+++...+...+-.|
T Consensus        64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~-~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~  129 (188)
T PF03962_consen   64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK-GREESEEREELLEELEELKKELKELKKELEKY  129 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444455555555555556655533 33444788888888888888888887766544

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=85.76  E-value=90  Score=37.65  Aligned_cols=48  Identities=15%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000924          687 RDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINM  734 (1222)
Q Consensus       687 ~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnK  734 (1222)
                      ..++...+.+|..-+.++...+.+.+..+..+..-.+++-..+..|..
T Consensus        94 ~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar  141 (499)
T COG4372          94 QGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELAR  141 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455667777777778777777777777666665555555444443

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=85.56  E-value=9.5  Score=42.15  Aligned_cols=58  Identities=17%  Similarity=0.220  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY  870 (1222)
Q Consensus       813 IDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERD  870 (1222)
                      .+.+.+++..+++++++..++++..+.+..++.++.+.+..+-|.+.++-..||++..
T Consensus       153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            3333333333333444444444444444455555555555555555555555555543

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=85.40  E-value=7.5  Score=46.51  Aligned_cols=10  Identities=20%  Similarity=0.298  Sum_probs=4.2

Q ss_pred             HHHHHHHHHH
Q 000924          860 KHWQSLKKQA  869 (1222)
Q Consensus       860 eeIkeLRKER  869 (1222)
                      .+..+|+++.
T Consensus        89 qe~~~LyKe~   98 (429)
T PRK00247         89 QKQKDLNKEY   98 (429)
T ss_pred             HHHHHHHHHc
Confidence            3444444433

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=85.39  E-value=60  Score=35.25  Aligned_cols=17  Identities=24%  Similarity=0.392  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHhHHHHHH
Q 000924          664 NLREQIKAAQSKVDEKT  680 (1222)
Q Consensus       664 eLKAKIdeLqKEIeKLn  680 (1222)
                      .|+..|..++.+++.+.
T Consensus        16 ~L~n~l~elq~~l~~l~   32 (194)
T PF15619_consen   16 ELQNELAELQRKLQELR   32 (194)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45555555555555443

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=85.21  E-value=70  Score=39.85  Aligned_cols=40  Identities=13%  Similarity=0.172  Sum_probs=24.5

Q ss_pred             CHHHHHHHHHHHHHHh---hcCCCChHHHHHHHHHHHHHHHHH
Q 000924          740 SVDDIDGSIRNMEHRI---AHETLPLKEEKQIIREIKQLKQRR  779 (1222)
Q Consensus       740 SVEEIDarIa~LE~RI---QTgSLSLvEEKKLLKEIKQLKKsR  779 (1222)
                      +..++-+++..|+|++   ++-.+...|+-+|..+++.|-..-
T Consensus       179 ~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~e  221 (557)
T COG0497         179 KERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSE  221 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHH
Confidence            4445556666666664   345566677777777766665553

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=85.00  E-value=40  Score=35.05  Aligned_cols=11  Identities=36%  Similarity=0.489  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 000924          808 FLRKEADSLRE  818 (1222)
Q Consensus       808 aLKKEIDELRk  818 (1222)
                      .+..++..++.
T Consensus       106 ~~~~~l~~~~~  116 (191)
T PF04156_consen  106 ELESELEKLKE  116 (191)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=84.68  E-value=69  Score=35.34  Aligned_cols=33  Identities=15%  Similarity=0.241  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 000924          715 RESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIR  749 (1222)
Q Consensus       715 Reer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa  749 (1222)
                      ...+...+.+.+.+..-|+.+-  +|..++.++-.
T Consensus        68 ~~~i~~~~~erdq~~~dL~s~E--~sfsdl~~rye  100 (207)
T PF05010_consen   68 EAEIQKLLKERDQAYADLNSLE--KSFSDLHKRYE  100 (207)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHH--hhHHHHHHHHH
Confidence            3344455555555555554442  34444444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PLN02939 transferase, transferring glycosyl groups

Probab=84.44  E-value=1.6e+02  Score=39.23  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=45.8

Q ss_pred             ChHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          661 DDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERS  713 (1222)
Q Consensus       661 DDEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~Kq  713 (1222)
                      -.+.+---|..+++-|--+++.|-.....++++..++..|+.+++-|.-++.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (977)
T PLN02939        129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE  181 (977)
T ss_pred             cHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence            35567778888999999999999999999999999999999999988766544

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=84.24  E-value=5.3  Score=38.20  Aligned_cols=64  Identities=13%  Similarity=0.263  Sum_probs=50.7

Q ss_pred             HHHHHHHHH-------HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          663 ENLREQIKA-------AQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEID  726 (1222)
Q Consensus       663 EeLKAKIde-------LqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk  726 (1222)
                      +.|.+||..       |+-+|+++++....+..+.+.++..|.+|..+...|+.++..|...+...+..|+
T Consensus         7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~   77 (79)
T PRK15422          7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            455566554       4668889999999999999999999999999999999998888877665554443

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=84.16  E-value=11  Score=42.17  Aligned_cols=62  Identities=18%  Similarity=0.157  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYD  871 (1222)
Q Consensus       810 KKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDE  871 (1222)
                      +.+++++.++...+..++.++..+|++.+..|..|..++..|.+++++.-.+.-.|++..++
T Consensus       141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E  202 (290)
T COG4026         141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE  202 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            33344444433333334555555555555666666555555555555555555555555444

>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal

Probab=83.95  E-value=0.44  Score=44.95  Aligned_cols=31  Identities=16%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             hhhhhcccCCCCchHHHHHHHHHHHHHHHhhc
Q 000924         1177 LPLRNRGKRRVPSWMWVLIIALVVFALFLLGN 1208 (1222)
Q Consensus      1177 kaI~nRkKr~~~yWmW~~~AAlvVlaLfvlGy 1208 (1222)
                      +.|++|.||| +.|-|++++++++++++++++
T Consensus         2 k~i~kK~K~k-~~l~~~~isi~~~lvi~~i~~   32 (96)
T PF13800_consen    2 KKILKKAKRK-SRLRTVVISIISALVIFIISF   32 (96)
T ss_pred             chHHHHHHHH-HHHHHHHHHHhhhhhhHHHHH
Confidence            5678888875 888877666555555555444

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=83.76  E-value=45  Score=38.46  Aligned_cols=64  Identities=17%  Similarity=0.186  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          807 KFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAY  870 (1222)
Q Consensus       807 KaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERD  870 (1222)
                      ..|+.|...|...++.+....+.|.-.+.--...+.-|..++...+.....+-.+++-++.++.
T Consensus        63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE  126 (307)
T PF10481_consen   63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE  126 (307)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555554444444444444333333344455555555555544444444444444443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function

Probab=83.73  E-value=3.8  Score=46.57  Aligned_cols=12  Identities=42%  Similarity=0.595  Sum_probs=4.7

Q ss_pred             HHHHhhhHHHHH
Q 000924         1049 KAEEKRKEEATA 1060 (1222)
Q Consensus      1049 k~~~~~~e~~~a 1060 (1222)
                      |+...|.++.++
T Consensus       259 K~~k~R~~~~~~  270 (321)
T PF07946_consen  259 KAKKNREEEEEK  270 (321)
T ss_pred             HHHHHHHHHHHH
Confidence            333334443333

One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=83.59  E-value=12  Score=41.29  Aligned_cols=80  Identities=21%  Similarity=0.328  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          766 KQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLL  845 (1222)
Q Consensus       766 KKLLKEIKQLKKsRKkViAnAa~rAKIQESidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQ  845 (1222)
                      +++++++.+|++.-+.-..          .-.+.+...+.++.|+.++....++++.+.....++.|+.+.++.+++.|.
T Consensus       130 ~~~~~~~~~lk~~~~~~~~----------~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl  199 (216)
T KOG1962|consen  130 EKAMKENEALKKQLENSSK----------LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL  199 (216)
T ss_pred             HHHHHHHHHHHHhhhcccc----------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            7778888887777443311          011223344455566666666666666666666677777766666666666


Q ss_pred             HHHHHHHHHH
Q 000924          846 GQFKAADEIR  855 (1222)
Q Consensus       846 eElkAL~EKR  855 (1222)
                      ++...+.++.
T Consensus       200 ee~~~Lq~~i  209 (216)
T KOG1962|consen  200 EEYSKLQEQI  209 (216)
T ss_pred             HHHHHHHHHH
Confidence            6655555543

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=83.56  E-value=1.6e+02  Score=38.70  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 000924         1091 RAALRAQKEAEQKEKEREKRAR 1112 (1222)
Q Consensus      1091 ~A~~raqKEAEkKeKErEKKAK 1112 (1222)
                      ++++|.--.-++.++.++-|..
T Consensus       725 ed~F~e~A~~~qq~~q~~srl~  746 (984)
T COG4717         725 EDAFREAAREEQQLTQRESRLE  746 (984)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555556666655544

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=83.49  E-value=74  Score=34.75  Aligned_cols=34  Identities=15%  Similarity=0.347  Sum_probs=21.1

Q ss_pred             CCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 000924          739 ISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREI  772 (1222)
Q Consensus       739 kSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEI  772 (1222)
                      .|.++|..+|......++.-.-.|......|..|
T Consensus        78 ~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~  111 (240)
T PF12795_consen   78 LSLEELEQRLSQEQAQLQELQEQLQQENSQLIEI  111 (240)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888888888877776665444444444433333

>KOG3054 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.34  E-value=4.7  Score=45.37  Aligned_cols=10  Identities=30%  Similarity=0.531  Sum_probs=5.4

Q ss_pred             CChhhhhccc
Q 000924         1175 IPLPLRNRGK 1184 (1222)
Q Consensus      1175 lPkaI~nRkK 1184 (1222)
                      |.-.|--|||
T Consensus       244 ltGVmDDRGK  253 (299)
T KOG3054|consen  244 LTGVMDDRGK  253 (299)
T ss_pred             heeeecCCCc
Confidence            4444555666

>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=83.32  E-value=93  Score=35.81  Aligned_cols=19  Identities=16%  Similarity=0.625  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 000924          766 KQIIREIKQLKQRREQISS  784 (1222)
Q Consensus       766 KKLLKEIKQLKKsRKkViA  784 (1222)
                      +.+|.++..|+..|..+..
T Consensus       194 r~ll~kl~~lk~eR~~l~~  212 (337)
T cd09234         194 KRILNKVNEMRKQRRSLEQ  212 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5577788888888876644

This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=83.28  E-value=15  Score=42.06  Aligned_cols=65  Identities=31%  Similarity=0.439  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 000924          708 ISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISS  784 (1222)
Q Consensus       708 ReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQTgSLSLvEEKKLLKEIKQLKKsRKkViA  784 (1222)
                      +.++|.....+.+.--||..|+..|.+|+    ++=|+.+-.+.|.++     .|+   .+=+||+||++--+.+.+
T Consensus        74 kakLkes~~~l~dRetEI~eLksQL~RMr----EDWIEEECHRVEAQL-----ALK---EARkEIkQLkQvieTmrs  138 (305)
T PF15290_consen   74 KAKLKESENRLHDRETEIDELKSQLARMR----EDWIEEECHRVEAQL-----ALK---EARKEIKQLKQVIETMRS  138 (305)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHh
Confidence            33444444455555668888888898887    344555555666554     343   445688888877665543

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=82.96  E-value=7.5  Score=50.74  Aligned_cols=9  Identities=22%  Similarity=0.434  Sum_probs=4.6

Q ss_pred             Chhhhhccc
Q 000924         1176 PLPLRNRGK 1184 (1222)
Q Consensus      1176 PkaI~nRkK 1184 (1222)
                      |-+..+||+
T Consensus       679 ~~~~~~~~~  687 (1021)
T PTZ00266        679 PYAYDSRKA  687 (1021)
T ss_pred             hhhhccccc
Confidence            344555554

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=82.89  E-value=6.8  Score=49.48  Aligned_cols=74  Identities=34%  Similarity=0.430  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHhhh
Q 000924         1042 EEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKE-KEREKRARKKEKR 1117 (1222)
Q Consensus      1042 ee~e~~rk~~~~~~e~~~ak~kE~kr~Ee~~Kak~a~eRKkk~aeKaaa~A~~raqKEAEkKe-KErEKKAKKK~~~ 1117 (1222)
                      |++|+.|.+++..+.-++.+...+|-+||++|++++.+|.  .+-..+++++..+.+|+...- -|+|++.+--+-|
T Consensus       941 Eaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~--l~~e~q~qla~e~eee~k~q~~~Eqer~D~~la~R 1015 (1259)
T KOG0163|consen  941 EAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERR--LALELQEQLAKEAEEEAKRQNQLEQERRDHELALR 1015 (1259)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4444444433333332333333344455555554444432  222222222333333333332 3666776655544

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=82.74  E-value=81  Score=34.66  Aligned_cols=25  Identities=12%  Similarity=0.235  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChHHH
Q 000924          896 EALQHLCVNQVERVLELWNNNDEFR  920 (1222)
Q Consensus       896 eELeelC~aEVEkFMelWN~dkeFR  920 (1222)
                      ..++.+...|+..+-.-.+--..=|
T Consensus       196 e~f~~~v~~Ei~~lk~~l~~e~~~R  220 (247)
T PF06705_consen  196 EQFQNFVLEEIAALKNALALESQER  220 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444333333333

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.68  E-value=1.2e+02  Score=36.79  Aligned_cols=29  Identities=10%  Similarity=0.252  Sum_probs=14.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          688 DDIQTIRASYKEYAEKLEAAISDERSARE  716 (1222)
Q Consensus       688 eELkalRaERdELiEQLKeLReE~KqlRe  716 (1222)
                      .+++.+-..-.+|+.++..+..+...++.
T Consensus       173 ee~kqlEe~ieeL~qsl~kd~~~~~~l~~  201 (446)
T KOG4438|consen  173 EEVKQLEENIEELNQSLLKDFNQQMSLLA  201 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555566666665555444433

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=82.63  E-value=1.3e+02  Score=36.79  Aligned_cols=41  Identities=12%  Similarity=0.318  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000924          662 DENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAIS  709 (1222)
Q Consensus       662 DEeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLRe  709 (1222)
                      .+.|-+.|.-+       .++-..+..++..++..|.-+.+.-+.|+.
T Consensus        45 ~e~l~~rv~sl-------sq~Nkvlk~elet~k~kcki~qeenr~l~~   85 (552)
T KOG2129|consen   45 GESLGARVSSL-------SQRNKVLKGELETLKGKCKIMQEENRPLLL   85 (552)
T ss_pred             HHHHHHHHHHH-------HhhhhhhhhhHHhhhhHHHHHHhcCchhhh
Confidence            44555555544       444445667777777777777766555544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=82.08  E-value=34  Score=41.16  Aligned_cols=71  Identities=15%  Similarity=0.264  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          802 IEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR-------LLGQFKAADEIRQEAYKHWQSLKKQAYDK  872 (1222)
Q Consensus       802 IqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~E-------LQeElkAL~EKRDEAYeeIkeLRKERDEk  872 (1222)
                      +..|...++++.+.+++++...+.++..|+++...++++...       +..+...+...|-....++.+|+++.-+.
T Consensus        32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~  109 (459)
T KOG0288|consen   32 LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEF  109 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            334444455555555555555555555554444444433322       22223333344455566666666665553

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=82.00  E-value=0.43  Score=60.35  Aligned_cols=52  Identities=12%  Similarity=0.141  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000924          829 AVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYK  880 (1222)
Q Consensus       829 ELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnR  880 (1222)
                      .+..++-.++..+.++...+..+......+-.++..|..+.+.....++...
T Consensus       409 ~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLe  460 (859)
T PF01576_consen  409 ELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELE  460 (859)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHH
Confidence            3333333344444444444444444444555555555555555555544433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=81.93  E-value=9.7  Score=36.42  Aligned_cols=63  Identities=16%  Similarity=0.332  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          665 LREQIKAAQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERSARESLKSKRQEIDS  727 (1222)
Q Consensus       665 LKAKIdeLqKEIeKLnq~RdaI~eELkalRa---ERdELiEQLKeLReE~KqlReer~EKIKEIk~  727 (1222)
                      +..+...+..+++.++..|+.+..++..++.   .+.+|..+.+.++.+++.+...+...-.++..
T Consensus        34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~   99 (108)
T PF02403_consen   34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE   99 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555566666666655555433   35555555555555555555544444444443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=81.91  E-value=88  Score=34.54  Aligned_cols=42  Identities=14%  Similarity=0.287  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhhc
Q 000924          714 ARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAH  757 (1222)
Q Consensus       714 lReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RIQT  757 (1222)
                      .+..+..+-.+...|+..+..+.  .+..+...-|..+|..|+.
T Consensus        14 ~~~e~~~~E~e~~~l~~k~~e~~--~~~~~m~~i~~e~Ek~i~~   55 (207)
T PF05010_consen   14 VQEEVAEKEEEEQELKKKYEELH--KENQEMRKIMEEYEKTIAQ   55 (207)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence            33333333344555555555544  4566666666666666554

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=81.83  E-value=83  Score=34.17  Aligned_cols=108  Identities=8%  Similarity=0.084  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 000924          813 ADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAAD-EIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLAS  891 (1222)
Q Consensus       813 IDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~-EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAa  891 (1222)
                      +..+.+........++...++|+..-.++..+..+.+.+. ...+++-.++.............|..+...++..     
T Consensus       109 ~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~-----  183 (236)
T cd07651         109 MEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALREL-----  183 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            3444444444444555666666666666665554433222 2334444444444444444444444444433333     


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhhhhhHh
Q 000924          892 KGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTL  932 (1222)
Q Consensus       892 kgdveELeelC~aEVEkFMelWN~dkeFRkDYeKrnl~Sl~  932 (1222)
                             ...+..+|-.++..+-.-.+.|=.+.|.++++..
T Consensus       184 -------~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a  217 (236)
T cd07651         184 -------NEIWNREWKAALDDFQDLEEERIQFLKSNCWTFA  217 (236)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3346677777777777778888888888877654

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=81.74  E-value=0.45  Score=58.73  Aligned_cols=40  Identities=15%  Similarity=0.419  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000924          664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEK  703 (1222)
Q Consensus       664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQ  703 (1222)
                      .++++++.++.++.++...|+.+...+..+..+-.+|..+
T Consensus       243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~  282 (713)
T PF05622_consen  243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQE  282 (713)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666555555555444444333333333333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=81.63  E-value=8.8  Score=50.18  Aligned_cols=6  Identities=17%  Similarity=0.562  Sum_probs=2.8

Q ss_pred             HHHHhh
Q 000924          508 CKEVLE  513 (1222)
Q Consensus       508 ~~~~~~  513 (1222)
                      |.++|.
T Consensus       124 a~QIL~  129 (1021)
T PTZ00266        124 TRQLLH  129 (1021)
T ss_pred             HHHHHH
Confidence            445544

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=81.43  E-value=18  Score=41.65  Aligned_cols=99  Identities=12%  Similarity=0.225  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Q 000924          664 NLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDD  743 (1222)
Q Consensus       664 eLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEE  743 (1222)
                      .|+..+.+++...++-=-.-.+|.++...+.=+-+-|...|..+.+.+-+++..+.+|+++++.++..+..|+  .-..+
T Consensus        81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~--~e~~~  158 (302)
T PF09738_consen   81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLR--EELDE  158 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            5566666666555544444555666666666666666677777777777777777788888887777777665  36677


Q ss_pred             HHHHHHHHHHHhhcCCCChHH
Q 000924          744 IDGSIRNMEHRIAHETLPLKE  764 (1222)
Q Consensus       744 IDarIa~LE~RIQTgSLSLvE  764 (1222)
                      |...|...+..|+--.|=|..
T Consensus       159 Lre~L~~rdeli~khGlVlv~  179 (302)
T PF09738_consen  159 LREQLKQRDELIEKHGLVLVP  179 (302)
T ss_pred             HHHHHHHHHHHHHHCCeeeCC
Confidence            777888777777665555544

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=81.34  E-value=0.47  Score=60.03  Aligned_cols=49  Identities=18%  Similarity=0.374  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          801 QIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFK  849 (1222)
Q Consensus       801 aIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElk  849 (1222)
                      .+..++..+..+++.|+..+..-......+.+.+..++.+|..+..++.
T Consensus       261 ~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e  309 (859)
T PF01576_consen  261 ALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYE  309 (859)
T ss_dssp             -------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3344444555555555555444433344444444444444444444333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=81.19  E-value=13  Score=41.71  Aligned_cols=76  Identities=13%  Similarity=0.241  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q 000924          678 EKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRI  755 (1222)
Q Consensus       678 KLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIKEIk~LQeaLnKLRnAkSVEEIDarIa~LE~RI  755 (1222)
                      .++..+..+..+++...++..+|+.++..+..++...+..+.....+.-.|...+.++.  .-+..|..+...|+..+
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~--~ev~~L~~r~~ELe~~~  207 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP--GEVYDLKKRWDELEPGV  207 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHHHHhcccc
Confidence            45566666777777777777777777777777666666666655555555555554443  35666777777776553

>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules

Probab=80.96  E-value=1.1e+02  Score=35.20  Aligned_cols=19  Identities=32%  Similarity=0.641  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 000924          766 KQIIREIKQLKQRREQISS  784 (1222)
Q Consensus       766 KKLLKEIKQLKKsRKkViA  784 (1222)
                      +.+|.++..|+..|..+..
T Consensus       194 r~~l~~l~~lk~eR~~~~~  212 (339)
T cd09235         194 RQLMEQVETIKAEREVIES  212 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7788888888888887633

This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=80.82  E-value=1.2e+02  Score=35.47  Aligned_cols=17  Identities=24%  Similarity=0.696  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 000924          766 KQIIREIKQLKQRREQI  782 (1222)
Q Consensus       766 KKLLKEIKQLKKsRKkV  782 (1222)
                      ..+++.|.+|++.++.+
T Consensus        80 N~LlKkl~~l~keKe~L   96 (310)
T PF09755_consen   80 NTLLKKLQQLKKEKETL   96 (310)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            36889999999998877

>PRK10698 phage shock protein PspA; Provisional

Probab=80.54  E-value=21  Score=39.12  Aligned_cols=19  Identities=16%  Similarity=0.298  Sum_probs=13.9

Q ss_pred             CHHHHHHHHHHHHHHhhcC
Q 000924          740 SVDDIDGSIRNMEHRIAHE  758 (1222)
Q Consensus       740 SVEEIDarIa~LE~RIQTg  758 (1222)
                      -.+.++.+|..||.+.+..
T Consensus       167 ~f~rmE~ki~~~Ea~aea~  185 (222)
T PRK10698        167 RFESFERRIDQMEAEAESH  185 (222)
T ss_pred             HHHHHHHHHHHHHHHHhHh
Confidence            3455778888888888764

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=80.54  E-value=98  Score=35.35  Aligned_cols=134  Identities=10%  Similarity=0.149  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHH-HHhhhhccchhHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          766 KQIIREIKQLKQRR-EQISSSIGEHDEVQLAFDQKDQI-EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKR  843 (1222)
Q Consensus       766 KKLLKEIKQLKKsR-KkViAnAa~rAKIQESidQKEaI-qEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~E  843 (1222)
                      +.++++|...+.+= ..|.........+..++.-.+.. ..++..++.++.+..++...   .+..|...+++++++|..
T Consensus        23 ~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~---~l~~Lq~ql~~l~akI~k   99 (258)
T PF15397_consen   23 KELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEES---KLSKLQQQLEQLDAKIQK   99 (258)
T ss_pred             HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 000924          844 LLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELW  913 (1222)
Q Consensus       844 LQeElkAL~EKRDEAYeeIkeLRKERDEkNkeFYqnRr~i~KARELAakgdveELeelC~aEVEkFMelW  913 (1222)
                      .++++..|.--+|.-|--.          .-..++..+.+..+++-. +-+..+|.+.|..+...|-..|
T Consensus       100 ~~~el~~L~TYkD~EYPvK----------~vqIa~L~rqlq~lk~~q-qdEldel~e~~~~el~~l~~~~  158 (258)
T PF15397_consen  100 TQEELNFLSTYKDHEYPVK----------AVQIANLVRQLQQLKDSQ-QDELDELNEMRQMELASLSRKI  158 (258)
T ss_pred             HHHHHHHHHHHhhhhhhHH----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.50  E-value=63  Score=35.48  Aligned_cols=70  Identities=9%  Similarity=0.094  Sum_probs=39.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          795 AFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQS  864 (1222)
Q Consensus       795 SidQKEaIqEQIKaLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIke  864 (1222)
                      ..+++..+..++..+.++++.++...+.+...+....+++.+++.+|..+..-.+.+.-.....+..+..
T Consensus        47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~  116 (251)
T PF11932_consen   47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ  116 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555566666666666666666666666666666666666666665555555554444444444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.23  E-value=35  Score=36.21  Aligned_cols=67  Identities=9%  Similarity=0.090  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          808 FLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQ  874 (1222)
Q Consensus       808 aLKKEIDELRkKLkkLeaElKELsKK~DEIkaEI~ELQeElkAL~EKRDEAYeeIkeLRKERDEkNk  874 (1222)
                      .....|..++..+..+..++..+...+.+....+..+++++.++.-.-..+=+++..|.++..++-+
T Consensus       113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~  179 (194)
T PF08614_consen  113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE  179 (194)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444444444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.16  E-value=27  Score=32.69  Aligned_cols=61  Identities=18%  Similarity=0.255  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000924          663 ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKRQ  723 (1222)
Q Consensus       663 EeLKAKIdeLqKEIeKLnq~RdaI~eELkalRaERdELiEQLKeLReE~KqlReer~EKIK  723 (1222)
                      +.|..||..|-.-|.-++.....+..+-..+..++..|..+...|+.++.++..-+...+.
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~   67 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG   67 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566555555555555555555555555555555555555555555555444444333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=80.05  E-value=7.2  Score=49.49  Aligned_cols=6  Identities=50%  Similarity=0.473  Sum_probs=2.3

Q ss_pred             HHHHHH
Q 000924         1095 RAQKEA 1100 (1222)
Q Consensus      1095 raqKEA 1100 (1222)
                      +.||++
T Consensus       285 akQK~~  290 (1064)
T KOG1144|consen  285 AKQKEE  290 (1064)
T ss_pred             HhhHHH
Confidence            334433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1222
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-09
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	3e-07
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	8e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	7e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	6e-04
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	9e-05
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 5e-11
 Identities = 51/396 (12%), Positives = 110/396 (27%), Gaps = 111/396 (28%)

Query: 788  EHDEVQLAFDQKDQIEEKMKFLRKE------ADSLRENVIKAEAATQAVKKLHREESEKL 841
            E  E Q  +  KD +                 D  + +++  E     +           
Sbjct: 10   ETGEHQYQY--KDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVS--GT 64

Query: 842  KRLLGQFKAADEIRQEAYKHW-QSLKKQAYDKNQHFW---KYKDDTKQANDLASKGDREA 897
             RL     +  E   E  + + + + +  Y      +     K + +Q            
Sbjct: 65   LRLFWTLLSKQE---EMVQKFVEEVLRINYK-----FLMSPIKTEQRQ---------PSM 107

Query: 898  LQHLCVNQVERVLELWNNNDEFRKEYVN-----SNIRSTLRRLK-----TLDG------- 940
            +  + + Q +R   L+N+N  F K  V+       +R  L  L+      +DG       
Sbjct: 108  MTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 941  -------R---------------SLGPDEEAPLIRPFLND---RVAKN-ISLTQISALER 974
                                   +L        +   L     ++  N  S +  S+  +
Sbjct: 165  WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 975  EKTEQVVPIKSEKVDDKPFPE-------VREQGDQIAKFKKPEK---PSRAENVSTTVSG 1024
             +   +       +  KP+         V+        F    K    +R + V+  +S 
Sbjct: 225  LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 1025 RDDEIEEAKEEVPKLTKEE-EEM-ARKAEEKRK---EEAT-----------AKLREQRRL 1068
                          LT +E + +  +  + + +    E               +R+    
Sbjct: 284  ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 1069 EEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKE 1104
             +  K     ++   I E     ++L   + AE ++
Sbjct: 344  WDNWK-HVNCDKLTTIIE-----SSLNVLEPAEYRK 373

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 6e-10
 Identities = 87/650 (13%), Positives = 185/650 (28%), Gaps = 198/650 (30%)

Query: 290 KPDVDFRD------SVVTESSPSGEVDDM--ERDNEVGKLNV-GSGKSSDSHPVDDAHVN 340
             + D +D      S+++      E+D +   +D   G L +  +  S     V    V 
Sbjct: 30  VDNFDCKDVQDMPKSILS----KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VE 84

Query: 341 EVGNGPVRDD---LVSVFHNSD-AKSETETGFDSVDAEEKVSILASDDQ--------RTE 388
           EV    +R +   L+S         S     +      E+   L +D+Q        R +
Sbjct: 85  EV----LRINYKFLMSPIKTEQRQPSMMTRMY-----IEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 389 P-EVLQGGIDGV-DERSISVDNA--------AVESCTSESVYEESTADVKAECEIENA-Y 437
           P   L+  +  +   +++ +D          A++ C S  V          +C+++   +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV----------QCKMDFKIF 185

Query: 438 VLSFRDVPGNEALVPESEVVSGSVSSIPEDVNVENVGIQHAGGEKDDHRSKELEENMETE 497
            L+      N            S  ++ E +      I      + DH S      +   
Sbjct: 186 WLNL----KNC----------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIH 228

Query: 498 FTGEESDDLVCKEVLENARIQFTGGGSDDQAHKEVKEKGGIQ----FTSGES------DD 547
               E   L+  +  EN  +        +  + +      +      T+           
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL-----LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 548 KTFQEVEGIQSTDGGTDDKT---CKKVVVNGGIKFTSE-EQNDKTCPEVKENRGIQLTGG 603
            T   +     +   T D+      K +     +      +   T P       + +   
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYL---DCRPQDLPREVLTTNPRR-----LSIIA- 334

Query: 604 EDGDRTFQDVEGIERSDR-----CETQTSTPEGSTVDASESRNIGVEVVKQPFYFL---- 654
                + +D  G+   D      C+  T+  E S ++  E         ++ F  L    
Sbjct: 335 ----ESIRD--GLATWDNWKHVNCDKLTTIIESS-LNVLEP-----AEYRKMFDRLSVFP 382

Query: 655 --VKVP--------RYDDENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKL 704
               +P            ++    +      V++  +     +          KE    +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV------VNKLHKYSLVEKQ--------PKESTISI 428

Query: 705 EAAISDERSARESLKSK-RQEIDSVQSRINMMKNAISVDDIDGSI--------------- 748
            +   + +   E+  +  R  +D          + +    +D                  
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 749 ------------RNMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAF 796
                       R +E +I H++        I+  ++QLK  +  I     ++D     +
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC----DNDP---KY 541

Query: 797 DQKDQIEEKMKFLR---------KEADSLR------ENVIKAEAATQAVK 831
           ++   +   + FL          K  D LR      +  I  EA  Q  +
Sbjct: 542 ERL--VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 9e-10
 Identities = 72/485 (14%), Positives = 140/485 (28%), Gaps = 135/485 (27%)

Query: 559 TDGGTDDKTCKKVVVNGGIKFTSEEQNDKTCPEVKEN-RGIQLTGGEDGDRTFQDVEGIE 617
            + G      K ++      F     ++  C +V++  + I L+  E+ D      + + 
Sbjct: 9   FETGEHQYQYKDILSV----FEDAFVDNFDCKDVQDMPKSI-LSK-EEIDHIIMSKDAVS 62

Query: 618 RSDR-----CETQTSTPEGSTVDASESRNIGVEVVKQPFY-FLVKVPRYDDENLREQIKA 671
            + R        Q        V         VE V +  Y FL+         ++ + + 
Sbjct: 63  GTLRLFWTLLSKQEEM-----VQKF------VEEVLRINYKFLM-------SPIKTEQRQ 104

Query: 672 AQSKVDEKTRSRDAIRDDIQTIRA---SYKEYAEKLEAAISDERS--------------- 713
                      RD + +D Q       S  +   KL  A+ + R                
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 714 --ARESLKSKRQEIDSVQSRINM------MKNAISVDDIDGSIRNMEHRIAHETLPLKE- 764
             A +   S +     VQ +++       +KN  S + +   ++ + ++I        + 
Sbjct: 165 WVALDVCLSYK-----VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 765 EKQIIREIKQLKQR-REQISSSIGEH-----DEVQ-----LAFDQKDQIEEKMKFL---- 809
              I   I  ++   R  + S   E+       VQ      AF+   +I      L    
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI------LLTTR 273

Query: 810 -RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQ 868
            ++  D L        +       L  +E + L  LL   K  D   Q+       L ++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LL---KYLDCRPQD-------LPRE 321

Query: 869 AYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNI 928
                             N             +    +   L  W+N      + + + I
Sbjct: 322 V--------------LTTNPRRLS--------IIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 929 RSTLRRLKTLDGRSLGPDEEAPLIRPF--LNDRVAKNISLTQISALEREKTEQVVPIKSE 986
            S+L  L+        P E   +             +I    +S +  +  +  V     
Sbjct: 360 ESSLNVLE--------PAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDV----M 405

Query: 987 KVDDK 991
            V +K
Sbjct: 406 VVVNK 410

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 56.3 bits (135), Expect = 6e-09
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 1049 KAEEKRKE-EATAKLREQR--RLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEK 1105
            +A+   +E E+  K RE++  RL+E   A +    ++   EKA+       Q+++EQ EK
Sbjct: 76   QADRLTQEPESIRKWREEQRKRLQELDAASK--VMEQEWREKAKKDLEEWNQRQSEQVEK 133

Query: 1106 EREKRARKKEKRKAAAAEDTAI 1127
              +   R  +K      +   I
Sbjct: 134  -NKINNRIADKAFYQQPDADII 154

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 1024 GRDDEIEEAKEEVPKLTKE-EEEMARKAEEKRKEEATAKLREQRRLEE-KAKAQEALERK 1081
             + D + +  E + K  +E  + +       +  E   + + ++ LEE   +  E +E+ 
Sbjct: 75   AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134

Query: 1082 K---RIAEKAQTRAALRAQKEAE 1101
            K   RIA+KA        Q +A+
Sbjct: 135  KINNRIADKA-----FYQQPDAD 152

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 4e-08
 Identities = 59/409 (14%), Positives = 141/409 (34%), Gaps = 83/409 (20%)

Query: 697  YKEYAEKLEAAISDERSARESLKSKRQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIA 756
             +   E+L+     ++ A   LK   Q+   +    N++                E   A
Sbjct: 859  MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL---------------QEKLQA 903

Query: 757  HETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSL 816
               L  + E+  +R   + ++  E +         ++   ++  Q++ + K ++++   L
Sbjct: 904  ETELYAEAEEMRVRLAAKKQELEEILH---EMEARIEEEEERSQQLQAEKKKMQQQMLDL 960

Query: 817  RENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHF 876
             E + + EAA Q ++        K+K++       ++   +  K  + L+++  D   + 
Sbjct: 961  EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020

Query: 877  WKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLK 936
             + ++  K    L +K +        ++++E  L+      +  K       +   +  +
Sbjct: 1021 AEEEEKAKNLTKLKNKHESM------ISELEVRLK------KEEKSR-----QELEKIKR 1063

Query: 937  TLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEV 996
             L+G                      +    QI+ L+ +  E    +             
Sbjct: 1064 KLEGE--------------------SSDLHEQIAELQAQIAELKAQLAK----------- 1092

Query: 997  REQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKE 1056
            +E+  Q A  +  ++ S+  N    +   +  I + +E++     E E+ AR   EK+K 
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL-----ESEKAARNKAEKQKR 1147

Query: 1057 EATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEK 1105
            + + +L            +  LE         Q    LR     +  +K
Sbjct: 1148 DLSEELEA---------LKTELEDTLDTTATQQ---ELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 55/362 (15%), Positives = 137/362 (37%), Gaps = 42/362 (11%)

Query: 763  KEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIK 822
            +E +    E+++ K+R+++  + + E ++      +  Q+ E+   L+++  +  E   +
Sbjct: 857  EEMQAKDEELQRTKERQQKAEAELKELEQ------KHTQLCEEKNLLQEKLQAETELYAE 910

Query: 823  AEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDD 882
            AE     +    +E  E L  +  + +  +E  Q+     + +++Q  D      + +++
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE---EQLEEE 967

Query: 883  TKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRS 942
                  L    ++           + +L + + N++  KE          + L+      
Sbjct: 968  EAARQKLQL--EKVTADGKIKKMEDDILIMEDQNNKLTKE---------RKLLE------ 1010

Query: 943  LGPDEEAPLIRPFLNDRVAKNISLTQI-SALEREKTEQVVPIKSEKVDDKPFPEVREQGD 1001
                E    +   L +   K  +LT++ +  E   +E  V +K E+   K   E+ +   
Sbjct: 1011 ----ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE---KSRQELEKIKR 1063

Query: 1002 QIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTK--EEEEMARKAEEKRKEEAT 1059
            ++      +   +   +   ++    ++ + +EE+       E+E   +    K+  E  
Sbjct: 1064 KLEGESS-DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122

Query: 1060 AKLRE-QRRLEEKAKAQEALERKKRI----AEKAQTRAALRAQKEAEQKEKEREKRARKK 1114
            + + + Q  LE +  A+   E++KR      E  +T         A Q+E          
Sbjct: 1123 SHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

Query: 1115 EK 1116
            +K
Sbjct: 1183 DK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 28/200 (14%), Positives = 84/200 (42%), Gaps = 14/200 (7%)

Query: 663  ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESLKSKR 722
            + + + I   + + ++ T+ R  + + +  +  +  E  EK +  ++  ++  E      
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN-LTKLKNKHE------ 1038

Query: 723  QEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIK-QLKQRREQ 781
              I  ++ R+   + +    +++   R +E   +     + E +  I E+K QL ++ E+
Sbjct: 1039 SMISELEVRLKKEEKS--RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 782  ISSSIGEHDEVQLAFD----QKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREE 837
            + +++   ++     +    +  ++E  +  L+++ +S +    KAE   + + +     
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156

Query: 838  SEKLKRLLGQFKAADEIRQE 857
              +L+  L       E+R  
Sbjct: 1157 KTELEDTLDTTATQQELRGS 1176

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 62/324 (19%), Positives = 121/324 (37%), Gaps = 79/324 (24%)

Query: 803  EEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLGQFKAADEIRQEAYKHW 862
            EE+M+   +E    +E   KAEA  + +++ H +  E+   L  + +A  E+  EA +  
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 863  QSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHLCVNQVERVLELWNNNDEFRKE 922
              L  +   K +         +  +++ ++ + E          ER  +L     + +++
Sbjct: 916  VRLAAK---KQEL-------EEILHEMEARIEEEE---------ERSQQLQAEKKKMQQQ 956

Query: 923  YVNSNIRSTLRRLKTLDGRSLGPDEEAPLIRPFLNDRVAKNISLTQISALEREKTEQVVP 982
                 +     +L+         +EEA                      L+ EK      
Sbjct: 957  -----MLDLEEQLE---------EEEA------------------ARQKLQLEKVTADGK 984

Query: 983  IKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKE 1042
            IK  +       ++    DQ  K  K                   E +  +E V  LT  
Sbjct: 985  IKKMED------DILIMEDQNNKLTK-------------------ERKLLEERVSDLTTN 1019

Query: 1043 --EEEMARKAEEKRKEEATAKLRE-QRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKE 1099
              EEE   K   K K +  + + E + RL+++ K+++ LE+ KR  E   +    +  + 
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079

Query: 1100 AEQKEKEREKRARKKEKRKAAAAE 1123
              Q  + + + A+K+E+ +AA A 
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALAR 1103

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.4 bits (110), Expect = 6e-05
 Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 1027 DEIEEAKEEVPKLTKEEEEMARKAEE--KRKEEATAKLREQRRLEEKAKAQEALERKKRI 1084
            D+I   +++  KLTKE + +  +  +      E   K +   +L+ K ++  + E + R+
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS-ELEVRL 1048

Query: 1085 AEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVP 1144
             ++ ++R  L   K   + E         + + + A  +      EEE   +        
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA------ 1102

Query: 1145 RTPELRDKPSTATKKPKKASQFTKQAKAK 1173
            R  +   + + A KK ++        +  
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQED 1131

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 1038 KLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQ 1097
            K+T++EEEM  K EE ++ +   +  E    E + K  +  E K  + EK Q    L A+
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 1098 KE-----AEQKEKEREKRARKKEKRKAAAAEDTAITNEE 1131
             E        K++E E+   + E R     E +     E
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 1025 RDDEIEEAKEEVPKLTKEEEEMARKAEEKRK--EEATAKLREQRRLEEKAKAQEALERKK 1082
                +   K+E+ ++  E E    + EE+ +  +    K+++Q    E+   +E   R+K
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 1083 RIAEKAQTRAALR-AQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEE 1132
               EK      ++  + +    E +  K  ++++  +   ++ T    EEE
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 16/150 (10%)

Query: 1028 EIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKA--QEALERKKRIA 1085
            E EE +  +    +E EE+  + E + +EE        ++L+ + K   Q+ L+ ++++ 
Sbjct: 910  EAEEMRVRLAAKKQELEEILHEMEARIEEEE----ERSQQLQAEKKKMQQQMLDLEEQLE 965

Query: 1086 EKAQTRAALRAQKEA--EQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEV 1143
            E+   R  L+ +K     + +K  +     +++      E   +        ++      
Sbjct: 966  EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA---- 1021

Query: 1144 PRTPELRDKPSTATKKPKKASQFTKQAKAK 1173
                E  +K    TK   K      + + +
Sbjct: 1022 ----EEEEKAKNLTKLKNKHESMISELEVR 1047

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 1025 RDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRI 1084
            ++   E+ + E     + EE   R A +K++ E       + R+EE+ +  + L+ +K+ 
Sbjct: 894  KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILH-EMEARIEEEEERSQQLQAEKKK 952

Query: 1085 AEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQ 1135
             +  Q    L  Q E E+  +++ +  +     K    ED  +  E++  +
Sbjct: 953  MQ--QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 54.0 bits (129), Expect = 3e-07
 Identities = 21/108 (19%), Positives = 41/108 (37%)

Query: 1025 RDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRI 1084
            RD      +  +   T  +E  A+   ++ ++EA  +L  Q+ L++    +   E  +  
Sbjct: 651  RDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELE 710

Query: 1085 AEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEE 1132
            A      +   A+ EAE + +           +    A+  AI  E E
Sbjct: 711  AMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 52.1 bits (124), Expect = 1e-06
 Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 6/181 (3%)

Query: 995  EVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKR 1054
            E  +Q  + A  +  +        S   + + +     +E   +L +++     +AE+ R
Sbjct: 644  EPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKAR 703

Query: 1055 K---EEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRA 1111
            K   E     +  +     KA+A+   E  +   E +  +A L+AQ  A + E E E   
Sbjct: 704  KELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE--- 760

Query: 1112 RKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPELRDKPSTATKKPKKASQFTKQAK 1171
            R K+ R+       A    E         +E  +  E+ +     T +    +    Q K
Sbjct: 761  RVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820

Query: 1172 A 1172
             
Sbjct: 821  L 821

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 49.4 bits (117), Expect = 8e-06
 Identities = 23/204 (11%), Positives = 57/204 (27%)

Query: 972  LEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEIEE 1031
               E +E   P  +     +      + G  ++           +     +        E
Sbjct: 604  FGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIE 663

Query: 1032 AKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTR 1091
                  +   + E    + E + + E    L +    + + +  E       +      +
Sbjct: 664  ITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAK 723

Query: 1092 AALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPELRD 1151
            A   ++ EA + E E      K + +  A   +  +   ++  +            E+  
Sbjct: 724  AEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSK 783

Query: 1152 KPSTATKKPKKASQFTKQAKAKSI 1175
                A  + KK  + T+     +I
Sbjct: 784  AQQLANVEAKKFKEMTEALGPGTI 807

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.1 bits (120), Expect = 5e-06
 Identities = 22/115 (19%), Positives = 39/115 (33%)

Query: 1025 RDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRI 1084
             ++       E  KL  + E +    EE +         ++   + + +  +    KK I
Sbjct: 951  MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010

Query: 1085 AEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSET 1139
             E A        Q  +E KE+    +  K+E  +    +   IT   E     ET
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 1025 RDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERK--- 1081
            R       K  V         MA++  +K K EA       R +E   K    LE K   
Sbjct: 880  RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEA-------RSVERYKKLHIGLENKIMQ 932

Query: 1082 --KRIAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEE 1132
              ++I E+ +   +L  +    +     E    + +  +   +E+ A      
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.0 bits (112), Expect = 5e-05
 Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 959  RVAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGD---QIAKFKKPEKPSRA 1015
            +    ++   ++  E + T   +    ++  +    E++ Q      + K+ +  K    
Sbjct: 841  KREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLEN 900

Query: 1016 ENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEK--AK 1073
               + +V    +E  ++   V    K  E    + +    +  +  L    +L E     
Sbjct: 901  WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNG 960

Query: 1074 AQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRAR-KKEKRK 1118
              E  ERK     +  T     A+        E E+  + +     
Sbjct: 961  VPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHH 1006

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 46.4 bits (110), Expect = 7e-05
 Identities = 27/184 (14%), Positives = 68/184 (36%), Gaps = 14/184 (7%)

Query: 997  REQGDQIAKFKK--PEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEEKR 1054
            R   D I +      EK  + E     ++    ++ + + +V  L     +  R+ + K 
Sbjct: 1895 RHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN 1954

Query: 1055 KEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQTRAALRAQKEAEQKEKEREKRARKK 1114
            ++    +      L++  + Q+A E K++ A + Q +  +R ++ A QK K      + +
Sbjct: 1955 EQ--ANQK-----LKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAE 2007

Query: 1115 EKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPE-----LRDKPSTATKKPKKASQFTKQ 1169
                     +       E     +  +      E      +++ +T  ++ ++    + +
Sbjct: 2008 PTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067

Query: 1170 AKAK 1173
             K K
Sbjct: 2068 VKNK 2071

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.4 bits (102), Expect = 6e-04
 Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 14/133 (10%)

Query: 1005 KFKKPEKPSRAENVSTTVSGRDDEIEEAKEEVPKLTKEEEEMARKAEE--KRKEEATAKL 1062
              K  E   + E  +  +     + + A+ +     + + ++  + +E   +K +A A L
Sbjct: 1944 AQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADL 2003

Query: 1063 REQRRLEEKAKAQEALERKKRIAEKAQTR------------AALRAQKEAEQKEKEREKR 1110
             +        +  E LE      +  Q              A  + +     +E E+ K 
Sbjct: 2004 EKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT 2063

Query: 1111 ARKKEKRKAAAAE 1123
               K K K   + 
Sbjct: 2064 ESSKVKNKVDRSI 2076

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 45.7 bits (107), Expect = 9e-05
 Identities = 57/459 (12%), Positives = 134/459 (29%), Gaps = 50/459 (10%)

Query: 663  ENLREQIKAAQSKVDEKTRSRDAIRDDIQTIRASYKEYAEKLEAAISDERSARESL-KSK 721
             +L E I+     ++   R+ +     +Q     +++Y    +     E+   E    + 
Sbjct: 260  SDLLEWIRRTIPWLEN--RAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTL 317

Query: 722  RQEIDSVQSRINMMKNAISVDDIDGSIRNMEHRIAHETLPLKEEKQIIREIKQLKQRREQ 781
            + ++        M      V DI+ +   +E         L  E   IR +++L    E+
Sbjct: 318  QTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNE---IRRLERLDHLAEK 374

Query: 782  ISSSIGEHDEVQLAFDQKDQIEEKMKFLRKEADSLRENVIKAEAATQAVKKLHREESEKL 841
                   H+            + K   L+++ D     + + +A  +  +    + +   
Sbjct: 375  FRQKASIHES---------WTDGKEAMLQQK-DYETATLSEIKALLKKHEAFESDLAAHQ 424

Query: 842  KRLLGQFKAADEIRQEAYKHWQSLKKQAYDKNQHFWKYKDDTKQANDLASKGDREALQHL 901
             R+      A E+ +  Y    S+  +   K    W         ++L +   +      
Sbjct: 425  DRVEQIAAIAQELNELDYYDSPSVNAR-CQKICDQW---------DNLGALTQKRREALE 474

Query: 902  CVNQVERVLELWNNNDEFRKEYVNSNIRSTLRRLKTLDGRSLGPDEEAPL--IRPFLNDR 959
               ++   ++        R    N+ +   +  L+         + +        F    
Sbjct: 475  RTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATL 534

Query: 960  VAKNISLTQISALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVS 1019
               +     I  +  E ++ V           P+  +  Q          E   + E+V 
Sbjct: 535  PDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQ----------EINGKWEHVR 584

Query: 1020 TTVSGRDDEIEEAKEEVPKLTKEEEEMARKAE-------EKRKEEATAKLREQRRLEEKA 1072
              V  RD  + E      +  +  ++   +A         K +E     +     LE++ 
Sbjct: 585  QLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQL 644

Query: 1073 KAQEALE-----RKKRIAEKAQTRAALRAQKEAEQKEKE 1106
                  E      K +I +       ++     + K   
Sbjct: 645  NHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTN 683

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Length = 503

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 28/199 (14%), Positives = 66/199 (33%), Gaps = 11/199 (5%)

Query: 970  SALEREKTEQVVPIKSEKVDDKPFPEVREQGDQIAKFKKPEKPSRAENVSTTVSGRDDEI 1029
            S L   + EQ    ++E  +++P  E  E        K  E+    +  + T +  +   
Sbjct: 11   SWLGFGQKEQTPEKETEVQNEQPVVE--EIVQAQEPVKASEQAVEEQPQAHTEAEAETFA 68

Query: 1030 EEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQ 1089
             +  E   ++ + E+         + E    +  E   +E +              E   
Sbjct: 69   ADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLP---------EDVN 119

Query: 1090 TRAALRAQKEAEQKEKEREKRARKKEKRKAAAAEDTAITNEEEYTQSSETPLEVPRTPEL 1149
              A    + +AE +  E  + A ++  ++    E+       E  + +   +      + 
Sbjct: 120  AEAVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQP 179

Query: 1150 RDKPSTATKKPKKASQFTK 1168
             ++ +   +KP K   F +
Sbjct: 180  VEEIAQEQEKPTKEGFFAR 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1222
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	5e-04
d1vp4a_	420	c.67.1.1 (A:) Putative aminotransferase TM1131 {Th	0.002
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.002
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.003

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 15/89 (16%), Positives = 36/89 (40%)

Query: 1030 EEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKAQEALERKKRIAEKAQ 1089
            +    E  +  +E E +   AE++  E    +   +        A+E L +K    ++ +
Sbjct: 50   KLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENR 109

Query: 1090 TRAALRAQKEAEQKEKEREKRARKKEKRK 1118
                    +  ++K+K  E+  + KE ++
Sbjct: 110  EAHLAAMLERLQEKDKHAEEVRKNKELKE 138

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.8 bits (91), Expect = 0.002
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 750 NMEHRIAHETLPLKEEKQIIREIKQLKQRREQISSSIGEHDEVQLAFDQKDQIEEKMKFL 809
           N+E +I+     +K    IIREI +    ++ IS   G  D     F +K+  E   + +
Sbjct: 11  NLEGKISKIGQNMKSS--IIREILKFAADKDAISFGGGVPDPE--TFPRKELAEIAKEII 66

Query: 810 RKEADSLRENVIKAEAATQAVKKLHREESEKLKRLLG-QFKAADEIRQEAYKHWQS-LKK 867
            KE            + T+    L ++  + L+R+ G      D +           L  
Sbjct: 67  EKEYHYTL-----QYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIG 121

Query: 868 QAYDKNQHFWKYKD 881
           + +  ++ +    D
Sbjct: 122 KLFLDDESYCVLDD 135

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 1025 RDDEIEEAKEEVPKLTKEEEEMARKAEEKRKEEATAKLREQRRLEEKAKA-QEALERKKR 1083
               E E+  E      +  +  A+   E +++      +++R  +E  K   E +E  + 
Sbjct: 198  TLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 257

Query: 1084 IAEKAQTRAALRAQKEAEQKEKEREKRARKKEKRK 1118
               K Q R      +E EQ  KE  ++  +  K +
Sbjct: 258  QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 292

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00