Citrus Sinensis ID: 000934

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------122

MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE

ccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccHHHHHcHHHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHcc

cccHHHHHHHHHHccccHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHcccccHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHHHHccccHcccccHHHHHHHHEEEccHHHHHHHHHHHHccccHHHHHHEHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccEEccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHcc

MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPlvkkvseprvVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTsslaqsihtsltpqltkgitlkdmntEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLrskgakpemIRTNIQMVGALSRavgyrfgphlgdtvPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEylsydpnftdnmeedsddeayeeeeedesaneytddedaSWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQtgnvtkgqidnnelnprwLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLadhigslipgiekslndksstsnlkiEALTFTRLvlsshsppvfhpyikalsspvlaaVGERYYKVTAEALRVCGELVRvlrpsveglgfdfkpyvqPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFgdnlgaelpacLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLmadkrsspnvglavrNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLlssakpspqsggvaKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILkddsstnsaKQHLALLCLGeigrrkdlssheHIENVIiesfqspfEEIKSAASYALGniavgnlskflPFILDQIDNQQKKQYLLLHSLKEVIVRqsvdkaefqdsSVEKILNLLFNHCESEEEGVRNVVAECLGkialiepaklvpalkvrttssaafTRATVVIAIKYSiverpekideiiFPEISSFLMLIKDQDRHVRRAAVLALSTfahnkpnlikgllpellpllydqTIVKKELIRtvdlgpfkhtvDDGLELRKAAFECVDTLLDScldqvnpssfivpylksgledhydvkmpchLILSKLADKCPSAVLAVLDSLvdplqktinfkpkqdAVKQEVDRNEDMIRSALRAIASLnqisggdcsMKFKSLMSEISKSPMLWEKFYTIRNE

MANLQMAAILekitgkdkdfRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAplvkkvseprvveMTDKLCIKllngkdqhRDIASIALKTIIAEVTTsslaqsihtsltpqltkgitlKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLAsslsddllaKATIEVVRnlrskgakpemirTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEeeeedesaneytddedasWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRqtgnvtkgqidnnelnprwllkqEVSKIVKSINRqlreksiktkqvgafsVLRELVVVLPDCLADHIGSLIpgiekslndksSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRpsveglgfdfKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIAliepaklvpalkvrttssaaftratVVIAIkysiverpekidEIIFPEISSFLMLIKDQDRHVRRAAVLALstfahnkpnlIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDplqktinfkpkqdavkqevdRNEDMIRSALRAIaslnqisggDCSMKFKSLMseiskspmlwekfytirne

MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIaslasslsddllakaTIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMeedsddeayeeeeedesaneyTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANtsfdtlldsllssAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKvrttssaaftratvvIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGllpellpllYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE

*******AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQL**********SVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPN*********************************WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEK*********NLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSL**************KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILK*********QHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINF********************ALRAIASLNQISGGDCSMKFK*L*******PMLWEKFYTI***

**NLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLN****HRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLT*************CECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLR******EMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND*SSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKP*P**GGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILK*****NSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQ****QE**RNEDMIRSALRAIASLNQIS*****MKFKSLMSEISKSPMLWEKFYTIRN*

MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA**********SCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNM**************************ASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSS*************AMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPK*********RNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE

*ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTD***********************TDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNV********ELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRN*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1219	2.2.26 [Sep-21-2011]
Q8L5Y6		1219	Cullin-associated NEDD8-d	yes	no	0.998	0.998	0.826	0.0
Q5R6L5		1230	Cullin-associated NEDD8-d	yes	no	0.977	0.969	0.437	0.0
Q86VP6		1230	Cullin-associated NEDD8-d	yes	no	0.975	0.966	0.438	0.0
A7MBJ5		1230	Cullin-associated NEDD8-d	yes	no	0.975	0.966	0.438	0.0
P97536		1230	Cullin-associated NEDD8-d	yes	no	0.975	0.966	0.438	0.0
Q6ZQ38		1230	Cullin-associated NEDD8-d	yes	no	0.975	0.966	0.438	0.0
Q86KD1		1238	Cullin-associated NEDD8-d	yes	no	0.977	0.962	0.396	0.0
Q6ZQ73		1235	Cullin-associated NEDD8-d	no	no	0.977	0.965	0.397	0.0
O75155		1236	Cullin-associated NEDD8-d	no	no	0.985	0.971	0.405	0.0
Q9R0L4		1273	Cullin-associated NEDD8-d	no	no	0.977	0.936	0.393	0.0

>sp\|Q8L5Y6\|CAND1_ARATH Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana GN=CAND1 PE=1 SV=1	Back alignment and function desciption

 Score = 2034 bits (5271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1009/1221 (82%), Positives = 1123/1221 (91%), Gaps = 4/1221 (0%)

Query: 1    MANLQMAAILEK--ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV 58
            MANLQ++ ILEK  +TGKDKD+RYMATSDLLNELNK+SFK D DLEV+LS+I++QQLDDV
Sbjct: 1    MANLQVSGILEKFQMTGKDKDYRYMATSDLLNELNKDSFKIDLDLEVRLSSIILQQLDDV 60

Query: 59   AGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS 118
            AGDVSGLAVKCLAPLVKKV E R+VEMT+KLC KLL+GKDQHRD ASIAL+T++A++   
Sbjct: 61   AGDVSGLAVKCLAPLVKKVGEERIVEMTNKLCDKLLHGKDQHRDTASIALRTVVAQIA-P 119

Query: 119  SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQ 178
            +LA SI  +LTPQ+  GI+ + M++ I+CECL+I+CDV+ K+G+LM++DHE+LL+ LL Q
Sbjct: 120  TLAPSILVTLTPQMIGGISGQGMSSGIKCECLEIMCDVVQKYGSLMTDDHEKLLNTLLLQ 179

Query: 179  LSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238
            L  NQA+VRKK+V+CIASLASSLSDDLLAKAT+EVV+NL ++ AK E+ RTNIQM+GAL 
Sbjct: 180  LGCNQATVRKKTVTCIASLASSLSDDLLAKATVEVVKNLSNRNAKSEITRTNIQMIGALC 239

Query: 239  RAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILH 298
            RAVGYRFG HLG+TVPVLI+YCTSASENDEELREYSLQALESFLLRCPRDIS YCDEIL+
Sbjct: 240  RAVGYRFGTHLGNTVPVLINYCTSASENDEELREYSLQALESFLLRCPRDISPYCDEILN 299

Query: 299  LTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIV 358
            LTLEY+SYDPNFTDNMEED+D+E  E+EE+DESANEYTDDEDASWKVRRAAAKCLA LIV
Sbjct: 300  LTLEYISYDPNFTDNMEEDTDNETLEDEEDDESANEYTDDEDASWKVRRAAAKCLAGLIV 359

Query: 359  SRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418
            SR EML+K+Y+EACPKLIDRFKEREENVKMDVFNTFI+L+RQTGNVTKGQ D +E +P+W
Sbjct: 360  SRSEMLTKVYQEACPKLIDRFKEREENVKMDVFNTFIDLLRQTGNVTKGQTDTDESSPKW 419

Query: 419  LLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN 478
            LLKQEVSKIVKSINRQLREKS+KTK VGAFSVLRELVVVLPDCLADHIGSL+PGIE++LN
Sbjct: 420  LLKQEVSKIVKSINRQLREKSVKTK-VGAFSVLRELVVVLPDCLADHIGSLVPGIERALN 478

Query: 479  DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE 538
            DKSSTSNLKIEAL FT+LVL+SH+PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE
Sbjct: 479  DKSSTSNLKIEALVFTKLVLASHAPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE 538

Query: 539  LVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLG 598
            LVRV+RPS  G+GFDFKP+V PIYNAIMSRLTNQDQDQEVKECAI+CMGLVISTFGD L 
Sbjct: 539  LVRVVRPSTAGMGFDFKPFVHPIYNAIMSRLTNQDQDQEVKECAITCMGLVISTFGDQLR 598

Query: 599  AELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRA 658
            AELP+CLPVLVDRMGNEITRLTAVKAF+VIA SPLHI+L+CVL+H+IAELT FLRKANR 
Sbjct: 599  AELPSCLPVLVDRMGNEITRLTAVKAFSVIATSPLHINLSCVLDHLIAELTGFLRKANRV 658

Query: 659  LRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRS 718
            LRQATL TMN+LV AYGDKIG+ AYEVI+VELS+LIS SDLHMTALALELCCTLM  K  
Sbjct: 659  LRQATLITMNTLVTAYGDKIGSEAYEVILVELSSLISVSDLHMTALALELCCTLMTGKSC 718

Query: 719  SPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAK 778
            S N+ LAVRNKVLPQAL L+KS LLQGQAL+ LQ FF ALVY ANTSF TLL+SLLS AK
Sbjct: 719  SENISLAVRNKVLPQALTLVKSPLLQGQALLDLQKFFEALVYHANTSFYTLLESLLSCAK 778

Query: 779  PSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLC 838
            PSPQSGGV KQA+YSIAQCVAVLCLAAGD+ CSSTVKML +ILKDDS TNSAKQHLALL 
Sbjct: 779  PSPQSGGVPKQALYSIAQCVAVLCLAAGDKNCSSTVKMLMEILKDDSGTNSAKQHLALLS 838

Query: 839  LGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDN 898
            LGEIGRRKDLS+H  IE ++IESFQSPFEEIKSAASYALGNIAVGNLS +LPFILDQIDN
Sbjct: 839  LGEIGRRKDLSAHAGIETIVIESFQSPFEEIKSAASYALGNIAVGNLSNYLPFILDQIDN 898

Query: 899  QQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKI 958
            QQKKQY+LLHSLKEVIVRQSVDKA+FQ+SSVEKIL LLFNHCESEEEGVRNVVAECLGK+
Sbjct: 899  QQKKQYILLHSLKEVIVRQSVDKADFQNSSVEKILALLFNHCESEEEGVRNVVAECLGKM 958

Query: 959  ALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQ 1018
            ALIEP KLVPAL+VRTTS AAFTRATVV A+KYS+VERPEK+DEIIFP+ISSFLMLIKD 
Sbjct: 959  ALIEPEKLVPALQVRTTSPAAFTRATVVTAVKYSVVERPEKLDEIIFPQISSFLMLIKDG 1018

Query: 1019 DRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDG 1078
            DRHVRRAAV ALSTFAH KPNLIKGLLPELLPLLYDQT++KKELIRTVDLGPFKH VDDG
Sbjct: 1019 DRHVRRAAVSALSTFAHYKPNLIKGLLPELLPLLYDQTVIKKELIRTVDLGPFKHVVDDG 1078

Query: 1079 LELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSA 1138
            LELRKAAFECV TL+DSCLDQVNPSSFIVP+LKSGLEDHYD+KM CHLILS LADKCPSA
Sbjct: 1079 LELRKAAFECVFTLVDSCLDQVNPSSFIVPFLKSGLEDHYDLKMLCHLILSLLADKCPSA 1138

Query: 1139 VLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKS 1198
            VLAVLDSLV+PL KTI+FKPKQDAVKQE DRNEDMIRSALRAI+SL++I+G D S KFK 
Sbjct: 1139 VLAVLDSLVEPLHKTISFKPKQDAVKQEHDRNEDMIRSALRAISSLDRINGVDYSHKFKG 1198

Query: 1199 LMSEISKSPMLWEKFYTIRNE 1219
            LM ++ +S  LWEKF TIRNE
Sbjct: 1199 LMGDMKRSVPLWEKFQTIRNE 1219

Required for SCF(TIR1) function. Modulates SCF(TIR1) function through its interactions with the CUL1 subunit. Positively regulates multiple E3 ubiquitin-protein ligase complexes and their associated developmental processes. Represses photomorphogenesis by promoting HY5 degradation in darkness.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q5R6L5\|CAND1_PONAB Cullin-associated NEDD8-dissociated protein 1 OS=Pongo abelii GN=CAND1 PE=2 SV=1	Back alignment and function description

>sp\|Q86VP6\|CAND1_HUMAN Cullin-associated NEDD8-dissociated protein 1 OS=Homo sapiens GN=CAND1 PE=1 SV=2	Back alignment and function description

>sp\|A7MBJ5\|CAND1_BOVIN Cullin-associated NEDD8-dissociated protein 1 OS=Bos taurus GN=CAND1 PE=2 SV=1	Back alignment and function description

>sp\|P97536\|CAND1_RAT Cullin-associated NEDD8-dissociated protein 1 OS=Rattus norvegicus GN=Cand1 PE=1 SV=1	Back alignment and function description

>sp\|Q6ZQ38\|CAND1_MOUSE Cullin-associated NEDD8-dissociated protein 1 OS=Mus musculus GN=Cand1 PE=2 SV=2	Back alignment and function description

>sp\|Q86KD1\|CAND1_DICDI Cullin-associated NEDD8-dissociated protein 1 OS=Dictyostelium discoideum GN=cand1 PE=3 SV=1	Back alignment and function description

>sp\|Q6ZQ73\|CAND2_MOUSE Cullin-associated NEDD8-dissociated protein 2 OS=Mus musculus GN=Cand2 PE=1 SV=2	Back alignment and function description

>sp\|O75155\|CAND2_HUMAN Cullin-associated NEDD8-dissociated protein 2 OS=Homo sapiens GN=CAND2 PE=1 SV=3	Back alignment and function description

>sp\|Q9R0L4\|CAND2_RAT Cullin-associated NEDD8-dissociated protein 2 OS=Rattus norvegicus GN=Cand2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1219
255573814		1218	tip120, putative [Ricinus communis] gi\|2	0.999	1.0	0.907	0.0
359486235		1218	PREDICTED: cullin-associated NEDD8-disso	0.999	1.0	0.904	0.0
297739452		1245	unnamed protein product [Vitis vinifera]	0.999	0.978	0.886	0.0
224119852		1215	predicted protein [Populus trichocarpa]	0.996	1.0	0.893	0.0
224129798		1223	predicted protein [Populus trichocarpa]	0.999	0.995	0.892	0.0
449431894		1218	PREDICTED: cullin-associated NEDD8-disso	0.999	1.0	0.894	0.0
356563692		1218	PREDICTED: cullin-associated NEDD8-disso	0.999	1.0	0.887	0.0
356522113		1218	PREDICTED: cullin-associated NEDD8-disso	0.999	1.0	0.886	0.0
79316548		1217	cullin-associated NEDD8-dissociated prot	0.998	1.0	0.827	0.0
297814506		1219	cullin-associated and neddylation dissoc	0.998	0.998	0.827	0.0

>gi\|255573814\|ref\|XP_002527826.1\| tip120, putative [Ricinus communis] gi\|223532750\|gb\|EEF34529.1\| tip120, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 2206 bits (5716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1106/1219 (90%), Positives = 1176/1219 (96%), Gaps = 1/1219 (0%)

Query: 1    MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAG 60
            MANLQ+  ILEK+ GKDKD+RYMATSDLLNEL+K++FK D DLE+KLSNIV+QQLDDVAG
Sbjct: 1    MANLQITGILEKMMGKDKDYRYMATSDLLNELSKDTFKPDTDLEIKLSNIVLQQLDDVAG 60

Query: 61   DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSL 120
            DVSGLAVKCLAPLVKKVSE RVVEMT+KLC KLLNGKDQHRDIASIALKTII+EVTT SL
Sbjct: 61   DVSGLAVKCLAPLVKKVSEARVVEMTNKLCDKLLNGKDQHRDIASIALKTIISEVTTQSL 120

Query: 121  AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLS 180
            AQ+I  SL+PQL KG++   M+TEI+CECLDILCDVLHKFGNLM+ DHE LL+ALL QL+
Sbjct: 121  AQAILVSLSPQLIKGVSSLGMSTEIKCECLDILCDVLHKFGNLMATDHEVLLNALLSQLN 180

Query: 181  ANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240
            +NQAS+RKK+VSCIASLASSLSDDLLAKAT+EVVRNLRSKG KPEM RTNIQM+GALSRA
Sbjct: 181  SNQASIRKKTVSCIASLASSLSDDLLAKATVEVVRNLRSKGVKPEMTRTNIQMIGALSRA 240

Query: 241  VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLT 300
            VGYRFGPHLGDTVP+LI+YCTSASENDEELREYSLQALESFLLRCPRDI SYCD+IL LT
Sbjct: 241  VGYRFGPHLGDTVPILINYCTSASENDEELREYSLQALESFLLRCPRDIYSYCDKILLLT 300

Query: 301  LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR 360
            LEYLSYDPNFTDNMEED+DDE++EEEE+DESANEYTDDED SWKVRRAAAKCLAALIVSR
Sbjct: 301  LEYLSYDPNFTDNMEEDTDDESHEEEEDDESANEYTDDEDVSWKVRRAAAKCLAALIVSR 360

Query: 361  PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL 420
            PE+LSKLYEEACPKLIDRFKEREENVKMDVFNTFIEL+RQTGNVTKGQID NEL+PRWLL
Sbjct: 361  PELLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELLRQTGNVTKGQIDMNELSPRWLL 420

Query: 421  KQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK 480
            KQEV KIVKSINRQLREKSIKTK VGAFSVL+ELVVVLPDCLA+HIGSLIPGIEK+LNDK
Sbjct: 421  KQEVPKIVKSINRQLREKSIKTK-VGAFSVLKELVVVLPDCLAEHIGSLIPGIEKALNDK 479

Query: 481  SSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELV 540
            SSTSNLKIEAL FTRLVL+SHSPPVFHP+IKALSSPVL+AVGERYYKVTAEALRVCGELV
Sbjct: 480  SSTSNLKIEALVFTRLVLASHSPPVFHPHIKALSSPVLSAVGERYYKVTAEALRVCGELV 539

Query: 541  RVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAE 600
            RV+RP+++GLGF+FKPYV PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNL AE
Sbjct: 540  RVVRPNIQGLGFEFKPYVHPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLRAE 599

Query: 601  LPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALR 660
            LPACLPVLVDRMGNEITRLTAVKAFAVIA+SPL IDL+CVLEHVIAELTAFLRKANRALR
Sbjct: 600  LPACLPVLVDRMGNEITRLTAVKAFAVIASSPLRIDLSCVLEHVIAELTAFLRKANRALR 659

Query: 661  QATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSP 720
            QATLGT+NSL+VAYGD+IG+SAYEVIIVELSTLISDSDLHMTALALELCCTLM D+RSSP
Sbjct: 660  QATLGTLNSLIVAYGDQIGSSAYEVIIVELSTLISDSDLHMTALALELCCTLMGDRRSSP 719

Query: 721  NVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPS 780
            NVGLAVRNKVLPQAL LIKSSLLQGQAL+ALQ+FFAALVYSANTSFDTLLDSLLSSAKPS
Sbjct: 720  NVGLAVRNKVLPQALTLIKSSLLQGQALLALQNFFAALVYSANTSFDTLLDSLLSSAKPS 779

Query: 781  PQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLG 840
            PQSGGVAKQA+YSIAQCVAVLCLAAGDQKCS+TVKMLT ILKDDSSTNSAKQHLALLCLG
Sbjct: 780  PQSGGVAKQALYSIAQCVAVLCLAAGDQKCSTTVKMLTQILKDDSSTNSAKQHLALLCLG 839

Query: 841  EIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQ 900
            EIGRRKDLS H  IE +IIESFQSPFEEIKSAASYALGNIAVGNLSK+LPFILDQIDNQQ
Sbjct: 840  EIGRRKDLSGHAQIETIIIESFQSPFEEIKSAASYALGNIAVGNLSKYLPFILDQIDNQQ 899

Query: 901  KKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIAL 960
            KKQYLLLHSLKEVIVRQSVDKAEFQDSSVE IL LLFNHCESEEEGVRNVVAECLGKIAL
Sbjct: 900  KKQYLLLHSLKEVIVRQSVDKAEFQDSSVETILKLLFNHCESEEEGVRNVVAECLGKIAL 959

Query: 961  IEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDR 1020
            IEPAKLVPALKVRTTS AAFTRATVVIA+KYSIVERPEKIDEII+PEISSFLMLI+D DR
Sbjct: 960  IEPAKLVPALKVRTTSPAAFTRATVVIAVKYSIVERPEKIDEIIYPEISSFLMLIRDHDR 1019

Query: 1021 HVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLE 1080
            HVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVK+ELIRTVDLGPFKH VDDGLE
Sbjct: 1020 HVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKQELIRTVDLGPFKHIVDDGLE 1079

Query: 1081 LRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVL 1140
            LRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGL+DHYDVKMPCHLILSKLADKCPSAVL
Sbjct: 1080 LRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLDDHYDVKMPCHLILSKLADKCPSAVL 1139

Query: 1141 AVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLM 1200
            AVLDSLVDPLQKT+NFKPKQDAVKQEVDRNEDMIRSALRAIA+LN+ISGGDCS KFK+LM
Sbjct: 1140 AVLDSLVDPLQKTVNFKPKQDAVKQEVDRNEDMIRSALRAIAALNRISGGDCSHKFKNLM 1199

Query: 1201 SEISKSPMLWEKFYTIRNE 1219
            +EISKSP LWEK+Y+IRNE
Sbjct: 1200 NEISKSPTLWEKYYSIRNE 1218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359486235\|ref\|XP_003633418.1\| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297739452\|emb\|CBI29634.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224119852\|ref\|XP_002331078.1\| predicted protein [Populus trichocarpa] gi\|222872806\|gb\|EEF09937.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224129798\|ref\|XP_002328805.1\| predicted protein [Populus trichocarpa] gi\|222839103\|gb\|EEE77454.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449431894\|ref\|XP_004133735.1\| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356563692\|ref\|XP_003550095.1\| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356522113\|ref\|XP_003529694.1\| PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|79316548\|ref\|NP_001030954.1\| cullin-associated NEDD8-dissociated protein 1 [Arabidopsis thaliana] gi\|3184283\|gb\|AAC18930.1\| unknown protein [Arabidopsis thaliana] gi\|330250502\|gb\|AEC05596.1\| cullin-associated NEDD8-dissociated protein 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297814506\|ref\|XP_002875136.1\| cullin-associated and neddylation dissociated, hemivenata [Arabidopsis lyrata subsp. lyrata] gi\|297320974\|gb\|EFH51395.1\| cullin-associated and neddylation dissociated, hemivenata [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1219
TAIR\|locus:2065279		1219	CAND1 "cullin-associated and n	0.998	0.998	0.774	0.0
UNIPROTKB\|A7MBJ5		1230	CAND1 "Cullin-associated NEDD8	0.986	0.978	0.428	2e-253
UNIPROTKB\|Q86VP6		1230	CAND1 "Cullin-associated NEDD8	0.986	0.978	0.428	2e-253
RGD\|620479		1230	Cand1 "cullin-associated and n	0.986	0.978	0.427	2.3e-252
MGI\|MGI:1261820		1230	Cand1 "cullin associated and n	0.986	0.978	0.427	3e-252
UNIPROTKB\|F1P624		1208	CAND1 "Uncharacterized protein	0.971	0.980	0.427	3.2e-248
UNIPROTKB\|E1C741		1239	CAND2 "Uncharacterized protein	0.983	0.967	0.416	4.1e-246
UNIPROTKB\|F1NHL2		1159	CAND1 "Uncharacterized protein	0.931	0.979	0.421	8.1e-234
FB\|FBgn0027568		1248	Cand1 "Cullin-associated and n	0.987	0.964	0.393	4e-225
DICTYBASE\|DDB_G0274167		1238	cand1 "cullin-associated neddy	0.983	0.968	0.381	7.1e-219

TAIR\|locus:2065279 CAND1 "cullin-associated and neddylation dissociated" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4785 (1689.5 bits), Expect = 0., P = 0.
 Identities = 946/1221 (77%), Positives = 1055/1221 (86%)

Query:     1 MANLQMAAILEK--ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV 58
             MANLQ++ ILEK  +TGKDKD+RYMATSDLLNELNK+SFK D DLEV+LS+I++QQLDDV
Sbjct:     1 MANLQVSGILEKFQMTGKDKDYRYMATSDLLNELNKDSFKIDLDLEVRLSSIILQQLDDV 60

Query:    59 AGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS 118
             AGDVSGLAVKCLAPLVKKV E R+VEMT+KLC KLL+GKDQHRD ASIAL+T++A++  +
Sbjct:    61 AGDVSGLAVKCLAPLVKKVGEERIVEMTNKLCDKLLHGKDQHRDTASIALRTVVAQIAPT 120

Query:   119 SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQ 178
              LA SI  +LTPQ+  GI+ + M++ I+CECL+I+CDV+ K+G+LM++DHE+LL+ LL Q
Sbjct:   121 -LAPSILVTLTPQMIGGISGQGMSSGIKCECLEIMCDVVQKYGSLMTDDHEKLLNTLLLQ 179

Query:   179 LSANQASVRKKSVSCIXXXXXXXXXXXXXXXTIEVVRNLRSKGAKPEMIRTNIQMVGALS 238
             L  NQA+VRKK+V+CI               T+EVV+NL ++ AK E+ RTNIQM+GAL 
Sbjct:   180 LGCNQATVRKKTVTCIASLASSLSDDLLAKATVEVVKNLSNRNAKSEITRTNIQMIGALC 239

Query:   239 RAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILH 298
             RAVGYRFG HLG+TVPVLI+YCTSASENDEELREYSLQALESFLLRCPRDIS YCDEIL+
Sbjct:   240 RAVGYRFGTHLGNTVPVLINYCTSASENDEELREYSLQALESFLLRCPRDISPYCDEILN 299

Query:   299 LTLEYLSYDPNFTDNMXXXXXXXXXXXXXXXXXXXXXTDDEDASWKVRRAAAKCLAALIV 358
             LTLEY+SYDPNFTDNM                     TDDEDASWKVRRAAAKCLA LIV
Sbjct:   300 LTLEYISYDPNFTDNMEEDTDNETLEDEEDDESANEYTDDEDASWKVRRAAAKCLAGLIV 359

Query:   359 SRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418
             SR EML+K+Y+EACPKLIDRFKEREENVKMDVFNTFI+L+RQTGNVTKGQ D +E +P+W
Sbjct:   360 SRSEMLTKVYQEACPKLIDRFKEREENVKMDVFNTFIDLLRQTGNVTKGQTDTDESSPKW 419

Query:   419 LLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN 478
             LLKQEVSKIVKSINRQLREKS+KTK VGAFSVLRELVVVLPDCLADHIGSL+PGIE++LN
Sbjct:   420 LLKQEVSKIVKSINRQLREKSVKTK-VGAFSVLRELVVVLPDCLADHIGSLVPGIERALN 478

Query:   479 DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE 538
             DKSSTSNLKIEAL FT+LVL+SH+PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE
Sbjct:   479 DKSSTSNLKIEALVFTKLVLASHAPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE 538

Query:   539 LVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLG 598
             LVRV+RPS  G+GFDFKP+V PIYNAIMSRLTNQDQDQEVKECAI+CMGLVISTFGD L 
Sbjct:   539 LVRVVRPSTAGMGFDFKPFVHPIYNAIMSRLTNQDQDQEVKECAITCMGLVISTFGDQLR 598

Query:   599 AELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRA 658
             AELP+CLPVLVDRMGNEITRLTAVKAF+VIA SPLHI+L+CVL+H+IAELT FLRKANR 
Sbjct:   599 AELPSCLPVLVDRMGNEITRLTAVKAFSVIATSPLHINLSCVLDHLIAELTGFLRKANRV 658

Query:   659 LRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRS 718
             LRQATL TMN+LV AYGDKIG+ AYEVI+VELS+LIS SDLHMTALALELCCTLM  K  
Sbjct:   659 LRQATLITMNTLVTAYGDKIGSEAYEVILVELSSLISVSDLHMTALALELCCTLMTGKSC 718

Query:   719 SPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANXXXXXXXXXXXXXAK 778
             S N+ LAVRNKVLPQAL L+KS LLQGQAL+ LQ FF ALVY AN             AK
Sbjct:   719 SENISLAVRNKVLPQALTLVKSPLLQGQALLDLQKFFEALVYHANTSFYTLLESLLSCAK 778

Query:   779 PSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLC 838
             PSPQSGGV KQA+YSIAQCVAVLCLAAGD+ CSSTVKML +ILKDDS TNSAKQHLALL 
Sbjct:   779 PSPQSGGVPKQALYSIAQCVAVLCLAAGDKNCSSTVKMLMEILKDDSGTNSAKQHLALLS 838

Query:   839 LGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDN 898
             LGEIGRRKDLS+H  IE ++IESFQSPFEEIKSAASYALGNIAVGNLS +LPFILDQIDN
Sbjct:   839 LGEIGRRKDLSAHAGIETIVIESFQSPFEEIKSAASYALGNIAVGNLSNYLPFILDQIDN 898

Query:   899 QQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKI 958
             QQKKQY+LLHSLKEVIVRQSVDKA+FQ+SSVEKIL LLFNHCESEEEGVRNVVAECLGK+
Sbjct:   899 QQKKQYILLHSLKEVIVRQSVDKADFQNSSVEKILALLFNHCESEEEGVRNVVAECLGKM 958

Query:   959 ALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQ 1018
             ALIEP KLVPAL+                A+KYS+VERPEK+DEIIFP+ISSFLMLIKD 
Sbjct:   959 ALIEPEKLVPALQVRTTSPAAFTRATVVTAVKYSVVERPEKLDEIIFPQISSFLMLIKDG 1018

Query:  1019 DRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDG 1078
             DRHVRRAAV ALSTFAH KPNLIKG         YDQT++KKELIRTVDLGPFKH VDDG
Sbjct:  1019 DRHVRRAAVSALSTFAHYKPNLIKGLLPELLPLLYDQTVIKKELIRTVDLGPFKHVVDDG 1078

Query:  1079 LELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSA 1138
             LELRKAAFECV TL+DSCLDQVNPSSFIVP+LKSGLEDHYD+KM CHLILS LADKCPSA
Sbjct:  1079 LELRKAAFECVFTLVDSCLDQVNPSSFIVPFLKSGLEDHYDLKMLCHLILSLLADKCPSA 1138

Query:  1139 VLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKS 1198
             VLAVLDSLV+PL KTI+FKPKQDAVKQE DRNEDMIRSALRAI+SL++I+G D S KFK 
Sbjct:  1139 VLAVLDSLVEPLHKTISFKPKQDAVKQEHDRNEDMIRSALRAISSLDRINGVDYSHKFKG 1198

Query:  1199 LMSEISKSPMLWEKFYTIRNE 1219
             LM ++ +S  LWEKF TIRNE
Sbjct:  1199 LMGDMKRSVPLWEKFQTIRNE 1219

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA;IMP

GO:0005618 "cell wall" evidence=IDA

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0003002 "regionalization" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009790 "embryo development" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0033043 "regulation of organelle organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048316 "seed development" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB\|A7MBJ5 CAND1 "Cullin-associated NEDD8-dissociated protein 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86VP6 CAND1 "Cullin-associated NEDD8-dissociated protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|620479 Cand1 "cullin-associated and neddylation-dissociated 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1261820 Cand1 "cullin associated and neddylation disassociated 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P624 CAND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C741 CAND2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHL2 CAND1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0027568 Cand1 "Cullin-associated and neddylation-dissociated 1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0274167 cand1 "cullin-associated neddylation-disassociated protein 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86VP6	CAND1_HUMAN	No assigned EC number	0.4389	0.9753	0.9666	yes	no
Q86KD1	CAND1_DICDI	No assigned EC number	0.3966	0.9778	0.9628	yes	no
P97536	CAND1_RAT	No assigned EC number	0.4381	0.9753	0.9666	yes	no
Q6ZQ38	CAND1_MOUSE	No assigned EC number	0.4381	0.9753	0.9666	yes	no
A7MBJ5	CAND1_BOVIN	No assigned EC number	0.4389	0.9753	0.9666	yes	no
Q5R6L5	CAND1_PONAB	No assigned EC number	0.4375	0.9778	0.9691	yes	no
Q8L5Y6	CAND1_ARATH	No assigned EC number	0.8263	0.9983	0.9983	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00035351001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1219 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	cul4	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (802 aa)		•	•	0.581
	GSVIVG00014046001	SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_10, whole genome shot [...] (1076 aa)	•	•		0.577
	GSVIVG00024137001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (490 aa)		•		0.497
	cul1	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (744 aa)		•	•	0.463
	GSVIVG00023565001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (742 aa)		•	•	0.457
	GSVIVG00036990001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (733 aa)		•	•	0.418
	GSVIVG00020935001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shot [...] (733 aa)		•	•	0.411

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1219
pfam08623		169	pfam08623, TIP120, TATA-binding protein interactin	2e-60

>gnl\|CDD\|219941 pfam08623, TIP120, TATA-binding protein interacting (TIP20)	Back alignment and domain information

 Score =  203 bits (520), Expect = 2e-60
 Identities = 84/176 (47%), Positives = 116/176 (65%), Gaps = 13/176 (7%)

Query: 1039 NLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLD 1098
            +LI  LL ELLP LY +T VKKELIR V +GPFKH VDDGLELRK A+E + TLLDSC  
Sbjct: 1    DLILPLLNELLPALYSETKVKKELIREVQMGPFKHVVDDGLELRKLAYETMYTLLDSCFS 60

Query: 1099 QVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKP 1158
            +++   F+   +++GL D +D+KM   L+LSKLA   P  VLA LD L +PL+KT++ K 
Sbjct: 61   RLDIPEFLD-RIEAGLSDEHDIKMLALLMLSKLAVLAPEEVLARLDRLAEPLRKTLSKKV 119

Query: 1159 KQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFY 1214
            K++AVKQE+++ +++IRS LR + SLN              +     SP++W +F 
Sbjct: 120  KENAVKQEIEKQQELIRSVLRLVVSLN------------LKLPSAQDSPVVWNEFV 163

TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1219
KOG1824		1233	consensus TATA-binding protein-interacting protein	100.0
KOG1824		1233	consensus TATA-binding protein-interacting protein	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.95
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.91
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.9
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.86
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.84
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.83
KOG1242		569	consensus Protein containing adaptin N-terminal re	99.82
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.82
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.81
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.73
KOG1242		569	consensus Protein containing adaptin N-terminal re	99.71
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	99.66
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	99.61
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.53
KOG0212		675	consensus Uncharacterized conserved protein [Funct	99.48
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	99.42
PTZ00429		746	beta-adaptin; Provisional	99.4
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.39
KOG0212		675	consensus Uncharacterized conserved protein [Funct	99.37
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	99.34
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	99.31
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	99.28
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	99.26
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.26
PTZ00429		746	beta-adaptin; Provisional	99.26
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	99.24
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.2
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	99.15
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.13
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	99.06
PRK09687		280	putative lyase; Provisional	99.05
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.04
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	98.93
PRK09687		280	putative lyase; Provisional	98.91
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	98.9
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	98.89
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.87
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	98.86
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	98.86
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	98.85
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	98.8
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	98.78
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.7
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	98.63
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	98.62
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.61
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.59
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	98.59
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.56
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.55
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	98.52
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	98.52
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	98.5
KOG0891		2341	consensus DNA-dependent protein kinase [Replicatio	98.41
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.39
KOG0414		1251	consensus Chromosome condensation complex Condensi	98.38
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.29
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.27
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	98.24
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.22
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	98.19
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.17
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.14
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	98.1
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	98.09
KOG4653		982	consensus Uncharacterized conserved protein [Funct	98.05
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	98.04
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	98.04
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	98.0
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	97.97
KOG2032		533	consensus Uncharacterized conserved protein [Funct	97.94
COG5096		757	Vesicle coat complex, various subunits [Intracellu	97.93
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.92
KOG0891		2341	consensus DNA-dependent protein kinase [Replicatio	97.91
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.9
KOG4653		982	consensus Uncharacterized conserved protein [Funct	97.88
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.82
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	97.81
PF05004		309	IFRD: Interferon-related developmental regulator (	97.81
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	97.81
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	97.79
KOG2956		516	consensus CLIP-associating protein [General functi	97.76
KOG2956		516	consensus CLIP-associating protein [General functi	97.74
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	97.73
COG5656		970	SXM1 Importin, protein involved in nuclear import	97.72
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.69
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	97.68
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.63
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.6
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	97.55
KOG1822		2067	consensus Uncharacterized conserved protein [Funct	97.47
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	97.45
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	97.44
KOG2032		533	consensus Uncharacterized conserved protein [Funct	97.44
KOG2062		929	consensus 26S proteasome regulatory complex, subun	97.44
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.41
COG5656		970	SXM1 Importin, protein involved in nuclear import	97.37
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.36
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	97.35
PF05804		708	KAP: Kinesin-associated protein (KAP)	97.34
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	97.33
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	97.32
PF05804		708	KAP: Kinesin-associated protein (KAP)	97.28
PF05004		309	IFRD: Interferon-related developmental regulator (	97.26
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	97.25
KOG2062		929	consensus 26S proteasome regulatory complex, subun	97.25
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	97.23
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.22
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.2
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	97.14
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	97.13
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	97.12
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.08
TIGR02270		410	conserved hypothetical protein. Members are found	97.07
KOG4524		1014	consensus Uncharacterized conserved protein [Funct	97.03
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.01
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	97.0
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.99
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	96.98
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.96
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	96.95
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.94
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	96.94
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.94
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	96.92
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	96.88
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	96.88
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.86
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.83
KOG0567		289	consensus HEAT repeat-containing protein [General	96.81
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.8
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.8
COG1413		335	FOG: HEAT repeat [Energy production and conversion	96.77
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	96.77
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	96.76
TIGR02270		410	conserved hypothetical protein. Members are found	96.75
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	96.68
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	96.68
KOG4413		524	consensus 26S proteasome regulatory complex, subun	96.6
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.59
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.55
KOG2025		892	consensus Chromosome condensation complex Condensi	96.46
PF05536		543	Neurochondrin: Neurochondrin	96.33
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	96.27
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	96.22
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.18
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	96.15
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	96.14
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.1
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	96.05
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	96.03
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	96.03
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.03
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.98
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	95.92
KOG2025		892	consensus Chromosome condensation complex Condensi	95.84
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	95.77
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	95.51
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	95.51
PF12054		441	DUF3535: Domain of unknown function (DUF3535); Int	95.43
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	95.43
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	95.16
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	95.13
KOG2137		700	consensus Protein kinase [Signal transduction mech	94.98
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	94.96
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	94.7
KOG0413		1529	consensus Uncharacterized conserved protein relate	94.68
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	94.59
KOG2213		460	consensus Apoptosis inhibitor 5/fibroblast growth	94.58
KOG2973		353	consensus Uncharacterized conserved protein [Funct	94.58
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	94.57
KOG1243		690	consensus Protein kinase [General function predict	94.48
KOG2549		576	consensus Transcription initiation factor TFIID, s	94.48
KOG2933		334	consensus Uncharacterized conserved protein [Funct	94.41
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	94.32
COG5096		757	Vesicle coat complex, various subunits [Intracellu	94.31
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	94.27
COG5116		926	RPN2 26S proteasome regulatory complex component [	93.99
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	93.94
KOG2933		334	consensus Uncharacterized conserved protein [Funct	93.85
PF11864		464	DUF3384: Domain of unknown function (DUF3384); Int	93.82
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	93.81
KOG2137		700	consensus Protein kinase [Signal transduction mech	93.77
KOG2081		559	consensus Nuclear transport regulator [Intracellul	93.68
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	93.53
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	93.29
KOG1243		690	consensus Protein kinase [General function predict	93.24
KOG2140		739	consensus Uncharacterized conserved protein [Gener	93.2
KOG0567		289	consensus HEAT repeat-containing protein [General	93.05
KOG2149		393	consensus Uncharacterized conserved protein [Funct	93.01
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	92.69
KOG2149		393	consensus Uncharacterized conserved protein [Funct	92.68
COG5095		450	TAF6 Transcription initiation factor TFIID, subuni	92.59
KOG2081		559	consensus Nuclear transport regulator [Intracellul	92.38
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	92.3
KOG0414		1251	consensus Chromosome condensation complex Condensi	92.27
PF01603		409	B56: Protein phosphatase 2A regulatory B subunit (	92.17
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	92.17
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	91.92
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	91.89
PF12074		339	DUF3554: Domain of unknown function (DUF3554); Int	91.89
KOG0413		1529	consensus Uncharacterized conserved protein relate	91.44
KOG1293		678	consensus Proteins containing armadillo/beta-caten	91.39
KOG2549		576	consensus Transcription initiation factor TFIID, s	91.32
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	90.98
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	90.93
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	90.77
PF12074		339	DUF3554: Domain of unknown function (DUF3554); Int	90.65
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	90.28
COG5116		926	RPN2 26S proteasome regulatory complex component [	90.01
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	90.0
KOG1837		1621	consensus Uncharacterized conserved protein [Funct	89.92
KOG0803		1312	consensus Predicted E3 ubiquitin ligase [Posttrans	89.68
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	89.53
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	89.27
KOG4413		524	consensus 26S proteasome regulatory complex, subun	88.97
KOG0889		3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	88.9
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	88.75
KOG1848		1610	consensus Uncharacterized conserved protein [Funct	88.41
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	88.34
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	88.08
PF07571		92	DUF1546: Protein of unknown function (DUF1546); In	87.98
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	87.84
KOG0889		3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	87.63
KOG3723		851	consensus PH domain protein Melted [Signal transdu	87.54
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	87.51
COG5095		450	TAF6 Transcription initiation factor TFIID, subuni	87.5
PF10350		255	DUF2428: Putative death-receptor fusion protein (D	87.13
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	86.65
PF12333		102	Ipi1_N: Rix1 complex component involved in 60S rib	86.58
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	86.2
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	85.99
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	85.43
KOG1851		1710	consensus Uncharacterized conserved protein [Funct	85.3
KOG1293		678	consensus Proteins containing armadillo/beta-caten	85.16
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	84.99
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	84.69
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	84.54
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	84.12
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	83.86
PF04388		668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	83.31
PF12530		234	DUF3730: Protein of unknown function (DUF3730) ; I	83.14
PF11864		464	DUF3384: Domain of unknown function (DUF3384); Int	82.58
KOG1837		1621	consensus Uncharacterized conserved protein [Funct	82.01
PF14225		262	MOR2-PAG1_C: Cell morphogenesis C-terminal	81.8
KOG3961		262	consensus Uncharacterized conserved protein [Funct	81.59
KOG0803		1312	consensus Predicted E3 ubiquitin ligase [Posttrans	80.63
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	80.06

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=4.7e-213  Score=1776.67  Aligned_cols=1207  Identities=52%  Similarity=0.814  Sum_probs=1135.6

Q ss_pred             CchHHHH-HHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccchhhHHHHHHHHHHhhhcCh
Q 000934            1 MANLQMA-AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE   79 (1219)
Q Consensus         1 ~~~~~l~-~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~L~D~~~eVq~~A~k~l~~l~~~~~~   79 (1219)
                      ||+++.. .+++||+++||||||||+|||+++|+++.+++|.+++++++++++++|+|.|+||||.|+||+|+++.|+++
T Consensus         1 ma~~~~~i~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke   80 (1233)
T KOG1824|consen    1 MASMQVGINLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE   80 (1233)
T ss_pred             CchhHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH
Confidence            8886666 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhhcCC---hhhhHHHHHhHhHHHHHhhhccCCChhHHHHHHHHHHHH
Q 000934           80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT---SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDV  156 (1219)
Q Consensus        80 ~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~---~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l  156 (1219)
                      .+++.+++.||..+.+++++.|++++++|++++.++++   +.+...+++.++|+|.+++..++....++.+++|+++++
T Consensus        81 ~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~  160 (1233)
T KOG1824|consen   81 DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV  160 (1233)
T ss_pred             HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999996   356788999999999999987665667999999999999


Q ss_pred             HHHhhhhhhHhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 000934          157 LHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGA  236 (1219)
Q Consensus       157 ~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~  236 (1219)
                      +.+||..+.++|..++.++++.+.+++..|||+|+.+||.++.+++...|..++.+++.+|..+.. ....+++++++++
T Consensus       161 lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q-~~~~rt~Iq~l~~  239 (1233)
T KOG1824|consen  161 LSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ-MSATRTYIQCLAA  239 (1233)
T ss_pred             HHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc-hHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999987754 4677899999999


Q ss_pred             HHHHhhhhhccchhhhHHHHHHhhhccCCCChHHHHHHHHHHHHHHHhCchhhcccHHHHHHHHHHhcccCCCCCCCCCC
Q 000934          237 LSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEE  316 (1219)
Q Consensus       237 l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~  316 (1219)
                      +++.+|+||+.|++.++|.+.++++..+++|||+||+++++||.|+.+||+++.||.++++++++.|++|||||.+|++|
T Consensus       240 i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~e  319 (1233)
T KOG1824|consen  240 ICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEE  319 (1233)
T ss_pred             HHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCcc
Confidence            99999999999999999999999976668899999999999999999999999999999999999999999999977655


Q ss_pred             CcccccccccchhhccCCCCCCCcccHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q 000934          317 DSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIE  396 (1219)
Q Consensus       317 d~~~~~~~~~~d~~~~~~~~dddD~swkVR~~Aa~~l~~li~~~~~~l~~~~~~i~p~Li~~~~d~~~~Vr~~~~~~l~~  396 (1219)
                      |++.+..+|.||||.+++|+||||+||||||+|+||+..+|.++++++..+|+++.|.++.||+||||+|+.+++.++..
T Consensus       320 Ded~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~  399 (1233)
T KOG1824|consen  320 DEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIA  399 (1233)
T ss_pred             chhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            44443334444555579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCccccCC---CCCChh---HHHHHHHHHHHHHHHHHhcccCccchhhHHHHHHHHHHHhcchhhhhhhhhhh
Q 000934          397 LVRQTGNVTKGQIDN---NELNPR---WLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLI  470 (1219)
Q Consensus       397 l~~~~~~~~~~~~~~---~~~~~~---~~L~~~~p~lv~~l~~~L~~~~~~~r~~~~~~~L~~L~~~~~~~l~~~~~~l~  470 (1219)
                      ++++++...+|..+.   ..+|+.   ..|.+++|.|++++.+++++++.++| ++|+.+|.+++.+.|+.+.+|++.++
T Consensus       400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~-~~cf~lL~eli~~lp~~l~~~~~slv  478 (1233)
T KOG1824|consen  400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTR-QGCFLLLTELINVLPGALAQHIPSLV  478 (1233)
T ss_pred             HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccch-hhHHHHHHHHHHhCcchhhhcccccc
Confidence            999999877776542   123433   57899999999999999999999999 99999999999999999999999999


Q ss_pred             HhHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCCchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccCC
Q 000934          471 PGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGL  550 (1219)
Q Consensus       471 ~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~i~p~l~~~l~d~~~~v~~~al~~l~~l~~~l~~~~~~~  550 (1219)
                      |+|...++|+++.++.+++++.|+..++.+|+|+.|+||++.+.|.+..+++|++|++.+|||.++++++++++|...++
T Consensus       479 pgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~  558 (1233)
T KOG1824|consen  479 PGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPS  558 (1233)
T ss_pred             hhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCc
Confidence            99999999999888999999999999999999999999999999999999999999999999999999999999987666


Q ss_pred             CCCCcccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHhhcCCchHHHHHHHHHHHhc
Q 000934          551 GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAA  630 (1219)
Q Consensus       551 ~~~~~~~l~~l~~~ll~~l~~~d~d~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~  630 (1219)
                      +.++.||+.+++...++++.++|.|+|||++||.|+|.++.++|+.++..++.+++++++|++||.||.+|++|+..|+.
T Consensus       559 ~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~  638 (1233)
T KOG1824|consen  559 SFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAM  638 (1233)
T ss_pred             cCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHhhhcCCCChhhhHHHHHHHH
Q 000934          631 SPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCC  710 (1219)
Q Consensus       631 s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~  710 (1219)
                      |+...++.+.+.++++++.+++||++|.+|.+++.++..++.+++..++...++.++.+++++++++|.|+.+.++.++.
T Consensus       639 S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~  718 (1233)
T KOG1824|consen  639 SPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLT  718 (1233)
T ss_pred             ccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            99888999999999999999999999999999999999999999888888899999999999999999999999999999


Q ss_pred             HHhhcccCCCchhHhHhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHhhcCCCh--HHHHHHHhccCCCCCCCcchhh
Q 000934          711 TLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSF--DTLLDSLLSSAKPSPQSGGVAK  788 (1219)
Q Consensus       711 ~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~~~~~--~~l~~~Ll~~~~~~~~~~~l~~  788 (1219)
                      .+..   .+|.....+...+++.++.+++||++||.++.+++.++.+++....+.+  ..++..+..++. .+..+.++|
T Consensus       719 tl~~---~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~-~~~~~~l~k  794 (1233)
T KOG1824|consen  719 TLAI---IQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVY-EQVTDGLHK  794 (1233)
T ss_pred             HHHh---cccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcc-cccccchhH
Confidence            9998   5787777788999999999999999999999999999999998875554  344455444443 234556899


Q ss_pred             hhhhhhhhHhhhhhhccCccchhhHHHHHHHHhhcCCCCchHHHHHHHHHHHhhhccCCCCCccchHHHHHHhcCCCchh
Q 000934          789 QAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEE  868 (1219)
Q Consensus       789 ~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~~~~l~~~ll~~l~~~~e~  868 (1219)
                      |+++++|+|+|+++.+.+. +...+...++.++++ |..++..+.|++++|||+|++.+++...++++++++.|++++|+
T Consensus       795 qa~~siA~cvA~Lt~~~~~-~s~s~a~kl~~~~~s-~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~ed  872 (1233)
T KOG1824|consen  795 QAYYSIAKCVAALTCACPQ-KSKSLATKLIQDLQS-PKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSED  872 (1233)
T ss_pred             HHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHhC-CCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHH
Confidence            9999999999999887764 556777788888874 55678899999999999999999988888999999999999999


Q ss_pred             HhHHHHHHHHhhhhcCcccchHHHHHHhccccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchH
Q 000934          869 IKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVR  948 (1219)
Q Consensus       869 vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r  948 (1219)
                      ||.||++|||++++||++.|+|+|++++.++|++||++|||+||+|...+.   ..+.|+++.||+.||++|++.+|++|
T Consensus       873 vksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv---d~~~~~v~~IW~lL~k~cE~~eegtR  949 (1233)
T KOG1824|consen  873 VKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASV---DGLKPYVEKIWALLFKHCECAEEGTR  949 (1233)
T ss_pred             HHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHhcccchhhhH
Confidence            999999999999999999999999999999999999999999999987753   36789999999999999999999999


Q ss_pred             hHHHHHHhhhhccCcccchHHHHHHhcCCCchhhHHHHhhhHhhhccCCchhhhhhhHhHHHHHhhccCCChHHHHHHHH
Q 000934          949 NVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVL 1028 (1219)
Q Consensus       949 ~~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R~~~~~~~k~~~~~~~~~~~~~l~~~i~~~l~~l~D~~~~vR~~a~~ 1028 (1219)
                      +++|||||+|++++|+.++|.|+..+.++.+..|.++++++||++++.+...|+++++.|+.|+..++|+|.+|||+|+.
T Consensus       950 ~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLv 1029 (1233)
T KOG1824|consen  950 NVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALV 1029 (1233)
T ss_pred             HHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCchhhhchhhhhhHHHHHhhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhhhcCCCchhchHH
Q 000934         1029 ALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVP 1108 (1219)
Q Consensus      1029 ~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~~~~~~~~~~~~~ 1108 (1219)
                      +|++++||+|++|++.++++||.||.+|++|+|+||+|+||||||+||||+++||+||||||||++.|++++|+.+|+ .
T Consensus      1030 v~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl-~ 1108 (1233)
T KOG1824|consen 1030 VLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFL-N 1108 (1233)
T ss_pred             HHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHH-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 4


Q ss_pred             HHhcccCCcchhHhhHHHHHHHHHhhCchhHHHhHHHhhHHHHhhhcccCCcchhhhhhhhHHHHHHHHHHHHHHhhccc
Q 000934         1109 YLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQIS 1188 (1219)
Q Consensus      1109 ~~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~kqe~e~~~e~~rs~lr~~~~l~~~~ 1188 (1219)
                      |+..||.|||||||+||+||.||+.+||+.|++|+|+++||||+|++.|+|+|+||||+||++|++|||+|++.+|.++|
T Consensus      1109 ~~~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip 1188 (1233)
T KOG1824|consen 1109 HVEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIP 1188 (1233)
T ss_pred             HHHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHHHhcCcchHHHHHHHhcC
Q 000934         1189 GGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 1219 (1219)
Q Consensus      1189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1219 (1219)
                      +.++||+|.+|..+++++|+++..|+.|+||
T Consensus      1189 ~v~~np~~~df~sqik~~pel~~~fe~I~ke 1219 (1233)
T KOG1824|consen 1189 EVEKNPQFSDFESQIKSNPELAAIFESIQKE 1219 (1233)
T ss_pred             ccccChHHHHHHHHhhcChhHHHHHHHHHHH
Confidence            9999999999999999999999999999997

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor	Back alignment and domain information

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length	Back alignment and domain information

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised	Back alignment and domain information

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal	Back alignment and domain information

>KOG3961 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1219
1u6g_C		1230	Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le		0.0
4a0c_A		1253	Structure Of The Cand1-Cul4b-Rbx1 Complex Length =		0.0

>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 1230

Back alignment and structure

Iteration: 1

Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/1233 (42%), Positives = 778/1233 (63%), Gaps = 33/1233 (2%) Query: 2 ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD 61 A+ ++ +LEK+T DKDFR+MAT+DL+ EL K+S K D D E K+ ++++ L+D G+ Sbjct: 4 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63 Query: 62 VSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV----TT 117 V LAVKCL PLV KV E +V + D LC +L+ K+Q RDI+SI LKT+I E+ + Sbjct: 64 VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 Query: 118 SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLP 177 S+LA ++ +T +LT I K + ++ E LDI+ D+L + G L+ N H +L+ LLP Sbjct: 124 SALAANVCKKITGRLTSAIA-KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP 182 Query: 178 QLSANQASVRKKSVSCIXXXXXXXXXXXXXXXTIEVVRNLRSKGAKPEMI---RTNIQMV 234 QL++ + +VRK+++ + ++++ +L S+ +K + + RT IQ + Sbjct: 183 QLTSPRLAVRKRTIIALGHLVMSCGNIVF----VDLIEHLLSELSKNDSMSTTRTYIQCI 238 Query: 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD 294 A+SR G+R G +L +P+++ +C +D+ELREY +QA ESF+ RCP+++ + Sbjct: 239 AAISRQAGHRIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVYPHVS 295 Query: 295 EILHLTLEYLSYDPNFT---DNMXXXXXXXXXXXXXXXXXXXXXTDDEDASWKVRRAAAK 351 I+++ L+YL+YDPN+ ++ +DD+D SWKVRRAAAK Sbjct: 296 TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 355 Query: 352 CLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDN 411 CL A++ +R EML + Y+ P LI RFKEREENVK DVF+ ++ L++QT V D Sbjct: 356 CLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDP 415 Query: 412 NEL----NPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIG 467 + + P +L+ +V IVK++++Q++EKS+KT+Q F++L ELV VLP L HI Sbjct: 416 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQC-CFNMLTELVNVLPGALTQHIP 474 Query: 468 SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYK 527 L+PGI SLNDKSS+SNLKI+AL+ ++L +HSP VFHP+++AL PV+A VG+ +YK Sbjct: 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYK 534 Query: 528 VTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMG 587 +T+EAL V +LV+V+RP + FD PY++ ++ + RL D DQEVKE AISCMG Sbjct: 535 ITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMG 594 Query: 588 LVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAE 647 +I GDNLG++LP L + ++R+ NEITRLT VKA +IA SPL IDL VL + Sbjct: 595 QIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPI 654 Query: 648 LTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALE 707 L +FLRK RAL+ TL ++ L+ Y D + A+ + ++ EL LIS+SD+H++ +A+ Sbjct: 655 LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 714 Query: 708 LCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANXXXX 767 TL + P+ + +L + + L++S LLQG AL A+ FF ALV + Sbjct: 715 FLTTL---AKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLG 771 Query: 768 XXXXXXXXXAKPSPQSGGVA-KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSS 826 QS + KQ+ YSIA+CVA L A + + + + D+ K+ S Sbjct: 772 YMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRS 830 Query: 827 TNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLS 886 T+S + LALL LGE+G DLS +++VI+E+F SP EE+KSAASYALG+I+VGNL Sbjct: 831 TDSIRL-LALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP 889 Query: 887 KFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEG 946 ++LPF+L +I +Q K+QYLLLHSLKE+I SV + VE I LL HCE EEG Sbjct: 890 EYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEG 946 Query: 947 VRNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFP 1006 RNVVAECLGK+ LI+P L+P LK A+K++I + P+ ID ++ Sbjct: 947 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN 1006 Query: 1007 EISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTV 1066 I FL ++D D +VRR A++ ++ AHNKP+LI+ Y++T V+KELIR V Sbjct: 1007 CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREV 1066 Query: 1067 DLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHL 1126 ++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++ F+ +++ GL+DHYD+KM L Sbjct: 1067 EMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFL 1125 Query: 1127 ILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQ 1186 +L +L+ CPSAVL LD LV+PL+ T K K ++VKQE ++ +++ RSA+RA+A+L Sbjct: 1126 MLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLT 1185 Query: 1187 ISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 1219 I + S S+IS +P L F +I+ + Sbjct: 1186 IPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218

PyMOL of 1u6g

>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1253

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1219
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	0.0
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	9e-15
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	7e-12
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	4e-10
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	1e-09
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	5e-09
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	9e-07
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	5e-05
1qgr_A		876	Protein (importin beta subunit); transport recepto	1e-12
1qgr_A		876	Protein (importin beta subunit); transport recepto	2e-09
1qgr_A		876	Protein (importin beta subunit); transport recepto	5e-07
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	2e-11
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	1e-09
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	5e-07
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	3e-06
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	4e-11
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	2e-09
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	3e-09
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	7e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	9e-10
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	1e-07
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	1e-06
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	9e-06
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	2e-04
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	9e-04
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	2e-07
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	2e-07
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	3e-07
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	3e-05
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	4e-04
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	2e-06
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	3e-06
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	3e-06
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	5e-06
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	4e-04
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-05
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	2e-05
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	3e-05
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	3e-04
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-05
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-04
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-05
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	1e-04
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	5e-04
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	6e-04

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

 Score =  871 bits (2250), Expect = 0.0
 Identities = 536/1229 (43%), Positives = 802/1229 (65%), Gaps = 25/1229 (2%)

Query: 2    ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD 61
            A+  ++ +LEK+T  DKDFR+MAT+DL+ EL K+S K D D E K+  ++++ L+D  G+
Sbjct: 4    ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63

Query: 62   VSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121
            V  LAVKCL PLV KV E +V  + D LC  +L+ K+Q RDI+SI LKT+I E+  +S  
Sbjct: 64   VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123

Query: 122  QSIHTSLTPQLTKGIT---LKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQ 178
             ++  ++  ++T  +T    K  +  ++ E LDI+ D+L + G L+ N H  +L+ LLPQ
Sbjct: 124  SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 183

Query: 179  LSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238
            L++ + +VRK+++  +  L  S  + +       ++  L SK       RT IQ + A+S
Sbjct: 184  LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSEL-SKNDSMSTTRTYIQCIAAIS 242

Query: 239  RAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILH 298
            R  G+R G +L   +P+++ +C   + +D+ELREY +QA ESF+ RCP+++  +   I++
Sbjct: 243  RQAGHRIGEYLEKIIPLVVKFC---NVDDDELREYCIQAFESFVRRCPKEVYPHVSTIIN 299

Query: 299  LTLEYLSYDPNF---TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAA 355
            + L+YL+YDPN+    ++ +E++ D    ++++  S +EY+DD+D SWKVRRAAAKCL A
Sbjct: 300  ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA 359

Query: 356  LIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415
            ++ +R EML + Y+   P LI RFKEREENVK DVF+ ++ L++QT  V     D + + 
Sbjct: 360  VVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAME 419

Query: 416  ----PRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIP 471
                P  +L+ +V  IVK++++Q++EKS+KT+Q   F++L ELV VLP  L  HI  L+P
Sbjct: 420  QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQ-CCFNMLTELVNVLPGALTQHIPVLVP 478

Query: 472  GIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAE 531
            GI  SLNDKSS+SNLKI+AL+   ++L +HSP VFHP+++AL  PV+A VG+ +YK+T+E
Sbjct: 479  GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE 538

Query: 532  ALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIS 591
            AL V  +LV+V+RP  +   FD  PY++ ++   + RL   D DQEVKE AISCMG +I 
Sbjct: 539  ALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIIC 598

Query: 592  TFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAF 651
              GDNLG++LP  L + ++R+ NEITRLT VKA  +IA SPL IDL  VL   +  L +F
Sbjct: 599  NLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASF 658

Query: 652  LRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCT 711
            LRK  RAL+  TL  ++ L+  Y D + A+  + ++ EL  LIS+SD+H++ +A+    T
Sbjct: 659  LRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTT 718

Query: 712  LMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFD-TLL 770
            L    +  P+    +   +L + + L++S LLQG AL A+  FF ALV +   +     L
Sbjct: 719  LA---KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDL 775

Query: 771  DSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSA 830
              +L+    S  +    KQ+ YSIA+CVA L  A   +  +   + + D+    S    +
Sbjct: 776  LRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRS--TDS 833

Query: 831  KQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLP 890
             + LALL LGE+G   DLS    +++VI+E+F SP EE+KSAASYALG+I+VGNL ++LP
Sbjct: 834  IRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLP 893

Query: 891  FILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNV 950
            F+L +I +Q K+QYLLLHSLKE+I   SV   +     VE I  LL  HCE  EEG RNV
Sbjct: 894  FVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGTRNV 950

Query: 951  VAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISS 1010
            VAECLGK+ LI+P  L+P LK    S +++ R++VV A+K++I + P+ ID ++   I  
Sbjct: 951  VAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGD 1010

Query: 1011 FLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGP 1070
            FL  ++D D +VRR A++  ++ AHNKP+LI+ LL  +LP LY++T V+KELIR V++GP
Sbjct: 1011 FLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGP 1070

Query: 1071 FKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSK 1130
            FKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +
Sbjct: 1071 FKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVR 1129

Query: 1131 LADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGG 1190
            L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   
Sbjct: 1130 LSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189

Query: 1191 DCSMKFKSLMSEISKSPMLWEKFYTIRNE 1219
            + S       S+IS +P L   F +I+ +
Sbjct: 1190 EKSPLMSEFQSQISSNPELAAIFESIQKD 1218

PyMOL of 1u6g

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1219
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.0
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-13
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-13
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-10
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-08
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	2e-11
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	7e-11
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	2e-05
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	4e-05
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	5e-04
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	3e-11
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	6e-07
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	2e-06
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	3e-04
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-06
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-05
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-06
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-04
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-05
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	9e-05
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	9e-05
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-04
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-04
d1oyza_		276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	6e-04
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.004

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  757 bits (1955), Expect = 0.0
 Identities = 532/1219 (43%), Positives = 793/1219 (65%), Gaps = 25/1219 (2%)

Query: 2    ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD 61
            A+  ++ +LEK+T  DKDFR+MAT+DL+ EL K+S K D D E K+  ++++ L+D  G+
Sbjct: 1    ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 60

Query: 62   VSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121
            V  LAVKCL PLV KV E +V  + D LC  +L+ K+Q RDI+SI LKT+I E+  +S  
Sbjct: 61   VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 120

Query: 122  QSIHTSLTPQLTKGIT---LKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQ 178
             ++  ++  ++T  +T    K  +  ++ E LDI+ D+L + G L+ N H  +L+ LLPQ
Sbjct: 121  SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 180

Query: 179  LSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238
            L++ + +VRK+++  +  L  S  + +       ++  L          RT IQ + A+S
Sbjct: 181  LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN-DSMSTTRTYIQCIAAIS 239

Query: 239  RAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILH 298
            R  G+R G +L   +P+++ +C   + +D+ELREY +QA ESF+ RCP+++  +   I++
Sbjct: 240  RQAGHRIGEYLEKIIPLVVKFC---NVDDDELREYCIQAFESFVRRCPKEVYPHVSTIIN 296

Query: 299  LTLEYLSYDPNFTDNMEEDSD---DEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAA 355
            + L+YL+YDPN+  + E++ +   D    ++++  S +EY+DD+D SWKVRRAAAKCL A
Sbjct: 297  ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA 356

Query: 356  LIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415
            ++ +R EML + Y+   P LI RFKEREENVK DVF+ ++ L++QT  V     D + + 
Sbjct: 357  VVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAME 416

Query: 416  ----PRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLIP 471
                P  +L+ +V  IVK++++Q++EKS+KT+Q   F++L ELV VLP  L  HI  L+P
Sbjct: 417  QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQ-CCFNMLTELVNVLPGALTQHIPVLVP 475

Query: 472  GIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAE 531
            GI  SLNDKSS+SNLKI+AL+   ++L +HSP VFHP+++AL  PV+A VG+ +YK+T+E
Sbjct: 476  GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE 535

Query: 532  ALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIS 591
            AL V  +LV+V+RP  +   FD  PY++ ++   + RL   D DQEVKE AISCMG +I 
Sbjct: 536  ALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIIC 595

Query: 592  TFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAF 651
              GDNLG++LP  L + ++R+ NEITRLT VKA  +IA SPL IDL  VL   +  L +F
Sbjct: 596  NLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASF 655

Query: 652  LRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCT 711
            LRK  RAL+  TL  ++ L+  Y D + A+  + ++ EL  LIS+SD+H++ +A+    T
Sbjct: 656  LRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTT 715

Query: 712  LMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTL-L 770
            L    +  P+    +   +L + + L++S LLQG AL A+  FF ALV +   +   + L
Sbjct: 716  LA---KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDL 772

Query: 771  DSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSA 830
              +L+    S  +    KQ+ YSIA+CVA L  A   +  +   + + D+    S+   +
Sbjct: 773  LRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD--S 830

Query: 831  KQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLP 890
             + LALL LGE+G   DLS    +++VI+E+F SP EE+KSAASYALG+I+VGNL ++LP
Sbjct: 831  IRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLP 890

Query: 891  FILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNV 950
            F+L +I +Q K+QYLLLHSLKE+I   SV   +     VE I  LL  HCE  EEG RNV
Sbjct: 891  FVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGTRNV 947

Query: 951  VAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISS 1010
            VAECLGK+ LI+P  L+P LK    S +++ R++VV A+K++I + P+ ID ++   I  
Sbjct: 948  VAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGD 1007

Query: 1011 FLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGP 1070
            FL  ++D D +VRR A++  ++ AHNKP+LI+ LL  +LP LY++T V+KELIR V++GP
Sbjct: 1008 FLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGP 1067

Query: 1071 FKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSK 1130
            FKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+      GL+DHYD+KM   L+L +
Sbjct: 1068 FKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVED-GLKDHYDIKMLTFLMLVR 1126

Query: 1131 LADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGG 1190
            L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   
Sbjct: 1127 LSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1186

Query: 1191 DCSMKFKSLMSEISKSPML 1209
            + S       S+IS +P L
Sbjct: 1187 EKSPLMSEFQSQISSNPEL 1205

PyMOL of d1u6gc_

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1219
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	100.0
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	100.0
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	100.0
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	100.0
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	100.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.97
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.96
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.96
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.84
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.74
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.66
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.59
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.38
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.31
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.3
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.04
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.79
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.61
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.02
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.59
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.29
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	84.49
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	82.51
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	82.41

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=1290.64  Aligned_cols=1193  Identities=45%  Similarity=0.739  Sum_probs=1077.3

Q ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             11889999988149992025653999999751035778768899999999985038641036889998998742059223
Q 000934            2 ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR   81 (1219)
Q Consensus         2 ~~~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~v~~~ll~~l~D~~~~Vq~~A~~~l~~l~~~~~~~~   81 (1219)
                      ++|+|+++|+||+|+|||+||||+|||.+.++++.+++|+...+++++.|+++|+|+|++||++|+||+++++.+++++.
T Consensus         1 ~~~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~   80 (1207)
T d1u6gc_           1 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ   80 (1207)
T ss_dssp             CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             96169999986679887299999999999872301445768899999999999679987999999999999997676866


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             999999999985089942041898799999820597----0246999995869898742015887468978999999999
Q 000934           82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT----SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL  157 (1219)
Q Consensus        82 ~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~----~~~~~~~~~~i~p~L~~~l~~~~~~~~v~~~~~~~L~~l~  157 (1219)
                      ++++++.|+..+.+++.+.|++++++|++++.+++.    ......+++.+++.+...+.+.+ +..++.++++++++++
T Consensus        81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~v~~~al~~l~~l~  159 (1207)
T d1u6gc_          81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADML  159 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHH
T ss_conf             999999999985689632659999999999996632002311278899999999987634777-7899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             98303223769999999943103891889999999999989617999999999999998511899847899999999999
Q 000934          158 HKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL  237 (1219)
Q Consensus       158 ~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~l~~l  237 (1219)
                      .++|..+.++++.+++.+++.+.++++.||++|+.|++.++.++++..+..+++.++..+..... ...++.++++++.+
T Consensus       160 ~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~l~~l  238 (1207)
T d1u6gc_         160 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCIAAI  238 (1207)
T ss_dssp             HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHH
T ss_conf             87567668779999999998808999899999999999999877998799999999998705998-89999999999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             97723311051454699999850006889768999999999999973911110108989999988515698989988877
Q 000934          238 SRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEED  317 (1219)
Q Consensus       238 ~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d  317 (1219)
                      ++..|.+|.+|++.++|.+++.++   ++++++|+.++++++.++..||.++.||++++++.++++++||||+..+.+++
T Consensus       239 ~~~~~~~~~~~l~~i~~~l~~~l~---~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~  315 (1207)
T d1u6gc_         239 SRQAGHRIGEYLEKIIPLVVKFCN---VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE  315 (1207)
T ss_dssp             HHHSSGGGTTSCTTHHHHHHHHHS---SCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             987615467779999999998825---86177789999999999986746544559999999999874073000346788


Q ss_pred             -CCC--CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             -631--01334210000378887786528999999999999882073016988988879998520654156898999999
Q 000934          318 -SDD--EAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTF  394 (1219)
Q Consensus       318 -~~~--~~~~e~~dd~~~~~~~dddD~swkVR~~A~~~l~~li~~~~~~l~~~~~~i~p~Li~~~~e~~e~Vr~~~~~~l  394 (1219)
                       +..  ....++++...++.|++++|.+|++|++|+++++.++.+.|+.+.++++.+.|.++.+++|+++.||.+++.++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l  395 (1207)
T d1u6gc_         316 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAY  395 (1207)
T ss_dssp             --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             77655540110135667888752201338999999999986898889999999999999999984598548999999999


Q ss_pred             HHHHHHHCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             9999970666766667----778873679988878999999998310682203667999999999836413455365446
Q 000934          395 IELVRQTGNVTKGQID----NNELNPRWLLKQEVSKIVKSINRQLREKSIKTKQVGAFSVLRELVVVLPDCLADHIGSLI  470 (1219)
Q Consensus       395 ~~li~~~~~~~~~~~~----~~~~~p~~~L~~~lp~li~~l~~~l~~~~~~~r~~~~~~lL~~l~~~~~~~l~~~~~~l~  470 (1219)
                      ..+++.+.....+...    ....++...+.+.+|.+++.+.+.+++++.++| +.++.++..++...++.+.+++..++
T Consensus       396 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r-~~~~~~l~~l~~~~~~~l~~~l~~~~  474 (1207)
T d1u6gc_         396 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTR-QCCFNMLTELVNVLPGALTQHIPVLV  474 (1207)
T ss_dssp             HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHH-HHHHHHHHHHHHHSTTTTGGGHHHHH
T ss_pred             HHHHHHCCCHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             99997303212555154888763026999998769999999998648865678-88999999999972257777667567


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             76998603778862168999999999860499987334255648999998528865789999999999988505786677
Q 000934          471 PGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGL  550 (1219)
Q Consensus       471 ~~i~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~i~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~  550 (1219)
                      +.+...+.++.....++.+++.++..++..|.+..+.+|+..+.+.+...+.+++++++.+++.+++.+++.+++.....
T Consensus       475 ~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~  554 (1207)
T d1u6gc_         475 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPS  554 (1207)
T ss_dssp             HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             89999976026416888999999999987226788999987633468888712308899999999998898750001102


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             88971008989999999753038898789999999999999403443531443799999852388417879999999861
Q 000934          551 GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAA  630 (1219)
Q Consensus       551 ~~~~~~~l~~l~~~ll~~l~~~d~d~~Vr~~Ai~~lg~l~~~~g~~l~~~l~~~l~~L~~~L~~e~~r~~ai~al~~ia~  630 (1219)
                      ...+.+++.++++.++..+...+.+.++|+.|+.|+|.++...|+.+.++++.+++.+.++++++.+|..++++++.++.
T Consensus       555 ~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~  634 (1207)
T d1u6gc_         555 SFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAG  634 (1207)
T ss_dssp             CCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             55447889999999999987313101788989999998988765565888888877788874230457999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             88988545899999999999999841499999999999999870788880118989999731049997132599999999
Q 000934          631 SPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCC  710 (1219)
Q Consensus       631 s~~~~~l~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~l~~~~~~~il~~l~~~l~~~d~~~~~~al~~l~  710 (1219)
                      +..+.++.+++..+++.+..+++++++.+|..++.++..++.+++..+.+..++.++..+.+++++.|.++++.++..++
T Consensus       635 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~  714 (1207)
T d1u6gc_         635 SPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLT  714 (1207)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             31321478999888889877501443889999999999999845421006777667776324443440788999999988


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             9931016898225757551289999994210110133799999999998514--98858999998504799999841144
Q 000934          711 TLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSA--NTSFDTLLDSLLSSAKPSPQSGGVAK  788 (1219)
Q Consensus       711 ~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~al~~~~~~l~~~~--~~~~~~l~~~ll~~~~~~~~~~~l~~  788 (1219)
                      .+.+   ..|.....+...+++.++..++++..++.++.++..++..++...  ......++..+....... .....++
T Consensus       715 ~l~~---~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~  790 (1207)
T d1u6gc_         715 TLAK---VYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQ-STALTHK  790 (1207)
T ss_dssp             HHTT---SCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC-----CCH
T ss_pred             HHHH---HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-CCHHHHH
T ss_conf             8886---26334466788889999998608235554699999999999860666544499999998751254-3034578


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH
Q ss_conf             44443446766452115863034479999998410799856889999999976312689998510499999732899545
Q 000934          789 QAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEE  868 (1219)
Q Consensus       789 ~a~~~~a~~i~~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~laL~~Lgeig~~~~~~~~~~l~~~l~~~~~~~~e~  868 (1219)
                      +++.++++|++.+....+. .....+..+.....+ +...+..+.+++.++|++|++.+....+++.+.+++.|.+++++
T Consensus       791 ~~~~~~~~~i~~l~~~~~~-~~~~~l~~~l~~~~~-~~~~~~~~~~al~~Lge~~~~~~~~~~~~l~~~l~~~l~~~~~~  868 (1207)
T d1u6gc_         791 QSYYSIAKCVAALTRACPK-EGPAVVGQFIQDVKN-SRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEE  868 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHSCC-CSHHHHTTTTTTTTT-TTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf             8999999999999986326-679999999998843-42259999999999999998525311599999999980899889


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             76789999886541195362698999730022205899999999996324442010048999999999942069961057
Q 000934          869 IKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVR  948 (1219)
Q Consensus       869 vR~aAa~aLG~l~~~~~~~~lp~il~~i~~~~~~~~~~l~alkeii~~~~~~~~~~~~~~~~~i~~~L~~~~~~~ee~vr  948 (1219)
                      ||.+|+.|+|.++.+|++.|+|.+++.+.++++.+|.++++++|++.+.+.   ..+.++.+.+|+.|+..++++++++|
T Consensus       869 vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei~~~~~~---~~~~~~~~~i~~~L~~~~~~~~~~vr  945 (1207)
T d1u6gc_         869 VKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASV---VGLKPYVENIWALLLKHCECAEEGTR  945 (1207)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCS---TTTHHHHHHHHHHHTTCCCCSSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             999999999999976288875999998724735899999999999985455---54687899999999988179718799


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             69999995510248664069999981588700237877556764225981134514674999996404898579999999
Q 000934          949 NVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVL 1028 (1219)
Q Consensus       949 ~~~ae~LG~l~~~~p~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~L~~~i~~~l~~l~d~~~~VR~~a~~ 1028 (1219)
                      +.+++|+|+|+..+|+.++|.|.+.+.++++.+|.+++.+++|++.+.+..+++++.++++.|+.+++|++.+||++|+.
T Consensus       946 ~~~a~~lg~L~~~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~ 1025 (1207)
T d1u6gc_         946 NVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALV 1025 (1207)
T ss_dssp             HHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999887027899999999985799999999999999999986655467899999999999867999899999999


Q ss_pred             HHHHHHHCCCHHHHCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCHHH
Q ss_conf             99988730841111024456687887631122100245216830240568457998999999999620137992001379
Q 000934         1029 ALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVP 1108 (1219)
Q Consensus      1029 ~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~elir~v~mgpfkh~~Ddgle~Rk~a~e~l~~ll~~~~~~~~~~~~~~~ 1108 (1219)
                      +|++++|++|++++|+++.++|.||++|.+|+|+||+|+||||||++|||+|+||+||||||+++++|++++++.+|+ +
T Consensus      1026 ~l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~-~ 1104 (1207)
T d1u6gc_        1026 TFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-N 1104 (1207)
T ss_dssp             HHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHH-H
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH-H
T ss_conf             999999848698999999999999998512564303450589511058858999999999999998755025899999-9


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             87323688503586589999999812903699968884498985621367751124555438999999999999952003
Q 000934         1109 YLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQIS 1188 (1219)
Q Consensus      1109 ~~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~kqe~e~~~e~~rs~lr~~~~l~~~~ 1188 (1219)
                      +++.||+||+|||++|++||.||+.++|..+.+++|.++++|+++|++|+|++|||||+||++|++||++|++.+|+++|
T Consensus      1105 ~~~~gl~d~~di~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~~~~ 1184 (1207)
T d1u6gc_        1105 HVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIP 1184 (1207)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99853565488999999999999986938789999999999999970166735043016779999999999999997389


Q ss_pred             CCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             9987826999999996292059
Q 000934         1189 GGDCSMKFKSLMSEISKSPMLW 1210 (1219)
Q Consensus      1189 ~~~~~~~~~~~~~~~~~~~~~~ 1210 (1219)
                      +++++|+|.+|++++++||+++
T Consensus      1185 ~~~~~~~~~~~~~~~~~~~~~~ 1206 (1207)
T d1u6gc_        1185 EAEKSPLMSEFQSQISSNPELA 1206 (1207)
T ss_dssp             SCSSSSSCCCCCHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHCHHCC
T ss_conf             8545837999999987391312

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure