Citrus Sinensis ID: 000947

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210--

MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF

ccccHHHHHcccccHHHHHHHcccccccHHHHccccHHHHHHHHcccccccHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEccccccccccc

ccHHHHHHHccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEccccccccccccccccHHHHHcccccccccHHHccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccEEEEccccccccccccHHHHHcccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHccccccccHHHcccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccHHHHHHHcccccccEEcccccccccccHcccccccccccccccEEcccccEEccHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccEEEEEcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccEccHcccccccccccccccccccccHHccccccccccccccEccccccccccccccccccccccccccccccccccccHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHccccccccccEEEHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEcccccHHHccc

MFYSQFIlakkgplgTIWIAAHLERKLrknqvadtdigvsvdsilfpdvPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRstavdlppeestapyhsitlpetfdlddfelpdndifqgnyvdhhvstreqitlqdtmdgmaystsqfglderfgdgdasqmgldldedllldkgtaaghgvsdadpqgsvkptthweqDNISERMNEIseertvndganqlervgldaepieyaeapstpglvqepnlssgqKALAsydhfesedqnsnelmATESrvndlsnsdchngdghtadwplhkdsnhdtvqcmlpekngyhvRDAAVKQAESlgmlsgesqqvnsdktaaslnctnvtcdmqdlnpetcpgstnmpvsedRLADYQAsnkkkshndaevsdnaagsgslVVVDadihacpdakdpkmlnidvAHEETASVSinvlkpcsyhtsdphmsspghdnslaqnlqplgvdlhsserskmnqasvdvqgeecyltdvmqseksqisgpsvcgdiqedngtldepldnatasNNELKKLnnsitsdlpapekllsvpegllnkpndlivestpekevlagsggvdagnklnsgkkrsyteSTITVeslnssesfgvdrtkrnsefipddddllSSILVgrkssvlkmkptppvrevasrkraRSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIrkkapctgpEILMIQMQFLeddifnepiftgmsaeLTSVHCEihdlskisisetdkdhgsseiandigcsiapnvieggkqgskepvalrnngdtqpaetsiqteshqgidhqfgaqntdaqghinsdtDVVKTVqneplaelnemdvdrgnvevaeeascsvnhgfgtssqtdvasaevcnqptgdktntvdaSLLVDtvcltpeptvdaqpvevgtsvakmdnakgvedtevIDRNIENIVAVETeakgtdgvlveegkvgvsvengadvetdrsVLTDAvntqegvsletggyndlaaangdnsrlevrnedgplagdwgsngkdptsnhmfseepvidstnsvelggdtinvslddgksqvdlrspmddgrmeieevtigndteflnvnddevaedyddgdgcpedarvlensgwssrTRAVSKYLQTLFvrepvqgrkVLALDHLLVGKTRKEASRMFFETLVLKTKdyihveqarpldninikpgaklmkadf

MFYSQFIlakkgplgTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRstavdlppeestapyhSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGhgvsdadpqgsvkptthweqdNISERMNEIseertvndganQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKkkshndaevsdnaagSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKevlagsggvdagnklnsgkkrsytestitveslnssesfgvdrtkrnsefipddddllssilvgrkssvlkmkptppvrevasrkrarsasqtnalkrkvlmddtmvlhgdvirqqltntedirrirkkapctgpEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTpeptvdaqpvevgtsvakmdnakgvedtevidrNIENIVAVeteakgtdgvlveegkvgvsvengadvetdrsVLTDAVNtqegvsletggyndLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTInvslddgksqvdlrspmddgRMEIEEvtigndteflnVNDDEVAEDYDDGDGCPEDARvlensgwssrtRAVSKYLQTLfvrepvqgrkvlaldhllvgktrkeaSRMFFETLVLKtkdyihveqarpldninikpgaklmkadf

MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGldldedllldKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLADYQASNKKKSHNDAEVSDNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSDPHMSSPGHDNSLAQNLQPLGVDLHSSERSKMNQASVDVQGEECYLTDVMQSEKSQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPddddllssILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSEIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLnvnddevaedyddgdgCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF

**YSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDL*******PYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAY**********************************************************************************************************************************************************************CM*******************************************V***************************************************LVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPC*************************************************Y***********************************************************************************************************************************************************************************KVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKIS***************DIGCSIA**********************************************************************************************************************TVDASLLVDTVCLTPEPTVDA**V*V***********GVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVE*******************************************************************************************************************IGNDTEFLNV*************************GWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNIN************

MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRS***********APYHSITLPETFDLDDFELPDNDIFQ**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DLLSSI****************************************MDDTMVLHGDVIRQQL***********KAPCTGPEILMIQMQFLE*DIFNEPIFTGMSAELTSVHCEIHDLSKI**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RAVSKY**********************VGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLM****

MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNGDGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGMLSGESQQVNSDKTAASLNCTNVTCDMQDLNPETCPGSTNMPVSEDRLAD****************DNAAGSGSLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSY************DNSLAQNLQPLGVDLHSS***********VQGEECYLTDVMQ**********VCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILVGRKSSVLKM*********************NALKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISIS********SEIANDIGCSIAPNVIEGGKQGSKEPVALRN***************HQGIDHQFGAQNTDAQGHINSDTDVVKTVQNEPLAELNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSNGKDPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKLMKADF

MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDLLL**************************************************************************************************************************************TVQCMLPEKN***VRDAA*********************************************************************************SLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHT*****************************************G*ECYLTDVM******************************************SITSDLPAPEKLLSVPEGLLNKPNDLIVESTPE***************************************************IPDDDDLLSSILVGRKSSVLKMKP*********************LKRKVLMDDTMVLHGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCEIHDLSKISISETDKDHGSSE*******************************************************NTD**GHINSDTDVVK****************RGNVEVA***************QT***SAE**N*********VDASLLVDTVCLTP*P**DAQPVEVGTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDRSVLTDAVNTQEGVSLETGGYNDLAAANGDNSRLEVRNEDGPLAGDWGSN**********SEEPVIDSTNSV*LGGDTIN****DGKSQVDLRSPMDDGRMEIEEVTIGNDTEFLNVND***********GCPE*A**LENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPG********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1212	2.2.26 [Sep-21-2011]
Q61550		635	Double-strand-break repai	yes	no	0.173	0.330	0.401	1e-35
Q9FQ19		693	Sister chromatid cohesion	no	no	0.120	0.210	0.486	2e-35
Q3SWX9		630	Double-strand-break repai	yes	no	0.150	0.288	0.438	3e-35
O60216		631	Double-strand-break repai	yes	no	0.150	0.288	0.438	3e-35
O93310		629	Double-strand-break repai	N/A	no	0.134	0.259	0.470	6e-35
A2AU37		552	Double-strand-break repai	no	no	0.129	0.284	0.459	2e-33
Q9H4I0		556	Double-strand-break repai	no	no	0.129	0.282	0.459	3e-33
D2HSB3		554	Double-strand-break repai	no	no	0.129	0.283	0.459	9e-33
Q9FQ20		810	Sister chromatid cohesion	no	no	0.126	0.188	0.428	4e-28
P30776		628	Cohesin subunit rad21 OS=	yes	no	0.108	0.210	0.444	3e-26

>sp\|Q61550\|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3	Back alignment and function desciption

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 136/234 (58%), Gaps = 24/234 (10%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFY+ F+L+K+GPL  IW+AAH ++KL K  V + ++  SV+SI+ P V +ALR S HLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
           LGVVRIY RK  YL  DC+EA +KIK AFR   VDLP E   A Y++ITLPE F   D  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 121 LPD-NDIFQGNYVDHHVSTREQITLQDTMDGMAY----STSQFGLDER--FGDGDASQMG 173
           LPD +DI        + S  E+IT+++ +  ++         FG+D+R    +G A +  
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFE-- 178

Query: 174 LDLDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVND 227
              D+D+L+   T+A + +   +P+ S          N++E+MN +  E    D
Sbjct: 179 ---DDDMLV--STSASNLL--LEPEQSTS--------NLNEKMNHLEYEDQYKD 217

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway (By similarity). The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.
Mus musculus (taxid: 10090)

>sp\|Q9FQ19\|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2	Back alignment and function description

>sp\|Q3SWX9\|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1	Back alignment and function description

>sp\|O60216\|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2	Back alignment and function description

>sp\|O93310\|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1	Back alignment and function description

>sp\|A2AU37\|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2	Back alignment and function description

>sp\|Q9H4I0\|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3	Back alignment and function description

>sp\|D2HSB3\|RD21L_AILME Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1	Back alignment and function description

>sp\|Q9FQ20\|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2	Back alignment and function description

>sp\|P30776\|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1212
255547434		1247	cohesin subunit rad21, putative [Ricinus	0.982	0.955	0.514	0.0
224101259		1208	predicted protein [Populus trichocarpa]	0.953	0.956	0.496	0.0
359495890		1335	PREDICTED: uncharacterized protein LOC10	0.971	0.882	0.465	0.0
296083395		1133	unnamed protein product [Vitis vinifera]	0.896	0.959	0.490	0.0
356566961		1223	PREDICTED: uncharacterized protein LOC10	0.909	0.901	0.432	0.0
356530009		1247	PREDICTED: uncharacterized protein LOC10	0.912	0.886	0.430	0.0
449470358		1147	PREDICTED: uncharacterized protein LOC10	0.902	0.953	0.447	0.0
449509197		892	PREDICTED: uncharacterized LOC101223080,	0.709	0.964	0.460	0.0
224109180		1065	predicted protein [Populus trichocarpa]	0.603	0.687	0.470	1e-165
374095603		1336	cohesin subunit [Camellia sinensis]	0.633	0.574	0.404	1e-134

>gi\|255547434\|ref\|XP_002514774.1\| cohesin subunit rad21, putative [Ricinus communis] gi\|223545825\|gb\|EEF47328.1\| cohesin subunit rad21, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1047 bits (2708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1268 (51%), Positives = 823/1268 (64%), Gaps = 77/1268 (6%)

Query: 1    MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
            MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP+VPIALRLSSHLL
Sbjct: 1    MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEVPIALRLSSHLL 60

Query: 61   LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
            LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE
Sbjct: 61   LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query: 121  LPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGLDLDEDL 180
            LPDNDIFQGNY+DHHVSTREQITLQDTMDG  YSTSQFGLDERFGDGD SQ+GLDL+E +
Sbjct: 121  LPDNDIFQGNYIDHHVSTREQITLQDTMDGAVYSTSQFGLDERFGDGDTSQVGLDLEEVI 180

Query: 181  LLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLDAE 240
            LL   +      +DA  Q SV+     +     ERM   SEE  +N   +++E +  + E
Sbjct: 181  LLIIMSIFSDCRNDA--QTSVELLEPSKTVASHERMTGTSEEMPLNGTRSKIEDLAANLE 238

Query: 241  PIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNSDCHNG 300
             I+YA+APSTPGL++EPNLSS +  L   DH ESED N   L   E   N  S S  H+G
Sbjct: 239  VIDYAQAPSTPGLMEEPNLSSVKDCLVCDDHLESEDHNVRGLGGMEISKNAPSKSALHHG 298

Query: 301  DGHTADWPLHKDSNHDTVQCMLPEKNGYHVRDAAVKQAESLGMLSGESQQVNSDKTAA-- 358
            D    D  L    +HDT+  M  E++     D  + QA   G L   S  V S+   A  
Sbjct: 299  DD-ARDLSLVDHLSHDTIAYMPTEEHSRLSGDLEINQAGLEGELL--STAVTSEHGPADE 355

Query: 359  SLNCTNVTCDMQDLNPETCPGSTNMPVSEDRL-ADYQAS-----NKKKSHNDAEVSDN-- 410
            +++  + +  ++D N      +     S D++  DY+ S     + K S+   E   N  
Sbjct: 356  TVSRQDESHQIEDKNKVVSSDNGETVTSIDQINGDYEESLAETNDNKFSNKIGECLLNGK 415

Query: 411  -----AAGSG---SLVVVDADIHACPDAKDPKMLNIDVAHEETASVSINVLKPCSYHTSD 462
                 A  SG   +L  V+ +       +D + L   V +E+     I+VL PC+ H S 
Sbjct: 416  VAPMPAHSSGLPTALETVNVEGQDGQGQEDSETLLDHVNNEQMKPTCISVLLPCNSHLSQ 475

Query: 463  PHMSSPGHDNS-LAQNLQPLGVDLHSSERSKMNQA------SVDVQGEECYLTDVMQSEK 515
            P + S   D S L  +LQ + V   SSE  +  +       S  VQGEEC++TDV+QSE+
Sbjct: 476  PDILSGEADTSVLVSDLQSVDVAPLSSETVQREEGLHTSGTSTKVQGEECHVTDVVQSEE 535

Query: 516  SQISGPSVCGDIQEDNGTLDEPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNK 575
            +QIS P++ G+ QED G  D  LDN  ++NN+ + L +  T++LPAPEKLLS+P+ LL+K
Sbjct: 536  NQISDPTLNGETQEDGGKHDVRLDNEISNNNQNENLTSPTTTELPAPEKLLSIPQTLLDK 595

Query: 576  PNDLIVESTPEKEVLAGSGGVDAGNKLNSGKKRSYTESTITVESLNSSESFGVDRTKRNS 635
            P+DL+VE TP+KEV     G  AG ++ +GKKRS+ ES +TV+SLNS ESFGV R+KR  
Sbjct: 596  PHDLLVE-TPDKEVQEEGDGSGAGIRI-TGKKRSFAESALTVQSLNSVESFGVTRSKRTV 653

Query: 636  EFIPDDDDLLSSILVGRKSSVLKMKPTPPVREVASRKRARSASQTNALKRKVLMDDTMVL 695
            E IPDDDDLLSSILVGRKSS LKMKPTPP  EV S KRAR  S+ +ALKRKVLMDD+MVL
Sbjct: 654  ESIPDDDDLLSSILVGRKSSALKMKPTPPAPEVPSMKRARFTSRPSALKRKVLMDDSMVL 713

Query: 696  HGDVIRQQLTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNEPIFTGMSAELTSVHCE 755
            HGD+IRQQLTNTEDIRR+RKKAPCT  EILMIQ QFLED+IF+EP+ TGMSA LT +H E
Sbjct: 714  HGDIIRQQLTNTEDIRRLRKKAPCTRTEILMIQRQFLEDEIFSEPVLTGMSAYLTRMHSE 773

Query: 756  IHDLSKISISETDKDHGSS-EIANDIGCSIAPNVIEGGKQGSKEPVALRNNGDTQPAETS 814
              D S I + E D ++ +S E+ ND   +      +GG +GS EPV  R + + Q +E S
Sbjct: 774  AFDWSGIKVCENDDNNMASLEVVNDEHSARQIVKQDGGMEGSTEPVGCRTDIEEQTSEVS 833

Query: 815  IQTESHQGIDHQFGAQNTDAQGHINSDTDVV--KTVQNEPLAELNEMDVDRGNVEVAEEA 872
            I  ++ Q  DH  G+ + D + H+N   D+V  +T  +E L E +EM+ D+ N EV++  
Sbjct: 834  INKDNQQVEDH-LGSYDIDNE-HMNGVVDIVGHRTSVHEHLGETSEMENDKVNSEVSD-- 889

Query: 873  SCSVNH---GFGTSSQTDVASAEVCNQPTGDKTNTVDASLLVDTVCLTPEPTVDAQPVEV 929
              ++NH   G  T SQ++ AS ++   P+     TVD S  VDT  + P   +  Q +E 
Sbjct: 890  --AINHSAPGLET-SQSEPASGDILEMPSA----TVDQS--VDTPII-PSDEIHNQLIED 939

Query: 930  GTSVAKMDNAKGVEDTEVIDRNIENIVAVETEAKGTDGVLVEEGKVGVSVENGADVETDR 989
               +  M N  G++ TEV+D   + I AVE E +  + +L+EE KV  SVE G D + D 
Sbjct: 940  VAGLRDMSNDIGLDCTEVVDNCAKKIGAVEAELRTGEELLLEESKVRASVEIGGDEQVDG 999

Query: 990  SVLTDAVNTQ-EGVSLETGGYNDLAAANGDNSRLEVRN-------EDGPLAGD-WGSNGK 1040
            S   D  +     VS E G + + ++ N D +  E+ N       ++G L G+  G + K
Sbjct: 1000 SAPNDGADASLANVSSEAGSFVNFSSVNIDQAFEEIENYKHGVFSDNGGLGGNSMGIDDK 1059

Query: 1041 DPTSNHMFSEEPVIDSTNSVELGGDTINVSLDDGKSQ----VDLRSPMD----------- 1085
            D TS+H+ SEE  I+ST ++ L GD  N S++DG +     VD +  MD           
Sbjct: 1060 DQTSDHLCSEEAKINSTYTIGLDGDFKNTSMNDGDNTVSQLVDQQDTMDTQNAPPDHVTT 1119

Query: 1086 -DGRMEIEEVTIGNDTEFLNVNDDEVAEDYDDGDGCPEDARVLENSGWSSRTRAVSKYLQ 1144
             +   +I +V   NDTEFLNV+DDE+ ED ++G    ED R+LENSGWSSRTRAV+KYLQ
Sbjct: 1120 GECDQDIRDVGFANDTEFLNVDDDEIDEDDNEGLPNAEDPRLLENSGWSSRTRAVAKYLQ 1179

Query: 1145 TLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPG 1204
            TLF +E   GRKVL +D+LL GKTRKEASRMFFETLVLKTKDY+HVEQ +P DNINIKP 
Sbjct: 1180 TLFDKEAEHGRKVLLMDNLLTGKTRKEASRMFFETLVLKTKDYVHVEQGKPFDNINIKPR 1239

Query: 1205 AKLMKADF 1212
            AKLMK+DF
Sbjct: 1240 AKLMKSDF 1247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224101259\|ref\|XP_002312205.1\| predicted protein [Populus trichocarpa] gi\|222852025\|gb\|EEE89572.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359495890\|ref\|XP_002265684.2\| PREDICTED: uncharacterized protein LOC100263480 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296083395\|emb\|CBI23350.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356566961\|ref\|XP_003551693.1\| PREDICTED: uncharacterized protein LOC100803412 [Glycine max]	Back alignment and taxonomy information

>gi\|356530009\|ref\|XP_003533578.1\| PREDICTED: uncharacterized protein LOC100809967 [Glycine max]	Back alignment and taxonomy information

>gi\|449470358\|ref\|XP_004152884.1\| PREDICTED: uncharacterized protein LOC101223080 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449509197\|ref\|XP_004163522.1\| PREDICTED: uncharacterized LOC101223080, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224109180\|ref\|XP_002315112.1\| predicted protein [Populus trichocarpa] gi\|222864152\|gb\|EEF01283.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|374095603\|gb\|AEY85029.1\| cohesin subunit [Camellia sinensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1212
TAIR\|locus:2181457		1031	SYN4 "sister chromatid cohesio	0.235	0.277	0.667	7e-169
TAIR\|locus:2164501		810	SYN2 [Arabidopsis thaliana (ta	0.127	0.191	0.427	3.3e-41
TAIR\|locus:2097548		693	SYN3 "AT3G59550" [Arabidopsis	0.242	0.424	0.348	4.7e-41
UNIPROTKB\|O60216		631	RAD21 "Double-strand-break rep	0.216	0.415	0.347	1.3e-36
UNIPROTKB\|Q3SWX9		630	RAD21 "Double-strand-break rep	0.216	0.415	0.347	2.3e-36
UNIPROTKB\|E2QRU9		631	RAD21 "Uncharacterized protein	0.216	0.415	0.347	2.3e-36
UNIPROTKB\|F1S1K0		631	LOC100738633 "Uncharacterized	0.216	0.415	0.347	2.3e-36
UNIPROTKB\|O93310		629	rad21 "Double-strand-break rep	0.215	0.414	0.349	5.3e-36
ZFIN\|ZDB-GENE-060503-223		637	rad21b "RAD21 homolog (S. pomb	0.207	0.394	0.368	7.4e-36
UNIPROTKB\|F1NYD0		633	RAD21 "Uncharacterized protein	0.134	0.257	0.470	7.7e-36

TAIR\|locus:2181457 SYN4 "sister chromatid cohesion 1 protein 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 959 (342.6 bits), Expect = 7.0e-169, Sum P(2) = 7.0e-169
 Identities = 195/292 (66%), Positives = 219/292 (75%)

Query:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
             MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFP+ PIALRLSSHLL
Sbjct:     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query:    61 LGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFE 120
             LGVVRIYSRKVNYLFDDCSEALLK+KQAFRS AVDLPPEESTAPYHSITLPETFDLDDFE
Sbjct:    61 LGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFE 120

Query:   121 LPDNDIFQGNYVDHHVSTREQITLQDTMDGMAYSTSQFGLDERFGDGDASQMGXXXXXXX 180
             LPDN+IFQGNYVDHHVST+EQITLQDTMDG+ YSTSQFGLDERFGDGD SQ         
Sbjct:   121 LPDNEIFQGNYVDHHVSTKEQITLQDTMDGVVYSTSQFGLDERFGDGDTSQAALDLDEAV 180

Query:   181 XXXKGTAAG--HGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERVGLD 238
                K        GV   D    +          I + M  +SE   ++    Q+E + ++
Sbjct:   181 FQDKDVIGSDDEGVPGIDHNAYLDAAA----PGIKDSMEGVSEAMPMDFNEEQVEDLAMN 236

Query:   239 AEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVN 290
              E IE A+AP TPGLV+ PN SS ++ +A  DH + ED N+ E + +   +N
Sbjct:   237 NEFIEDAQAPQTPGLVEVPNSSSVREQMACDDHMDVEDLNAEEGIKSSGELN 288

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=ISS;IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

TAIR\|locus:2164501 SYN2 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2097548 SYN3 "AT3G59550" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O60216 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3SWX9 RAD21 "Double-strand-break repair protein rad21 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QRU9 RAD21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S1K0 LOC100738633 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|O93310 rad21 "Double-strand-break repair protein rad21 homolog" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060503-223 rad21b "RAD21 homolog (S. pombe) b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYD0 RAD21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VIII0671	hypothetical protein (1209 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1212
pfam04825		110	pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec	4e-50
pfam04824		55	pfam04824, Rad21_Rec8, Conserved region of Rad21 /	9e-16

>gnl\|CDD\|218280 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec8 like protein	Back alignment and domain information

 Score =  172 bits (437), Expect = 4e-50
 Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 3/112 (2%)

Query: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLL 60
           MFYS  +L KKGPL T+W+AA LE+KL + Q+ + DI  S + IL P+ PIALRLS  LL
Sbjct: 1   MFYSHELLTKKGPLATVWLAATLEKKLSRKQILEVDIPKSCEEILNPEAPIALRLSGQLL 60

Query: 61  LGVVRIYSRKVNYLFDDCSEALLKIKQAFR-STAVDLPPEESTAPYHSITLP 111
            GVVRIYSRKV YL +DC+EAL ++K+AFR    +DLP  E  A  +++TLP
Sbjct: 61  YGVVRIYSRKVEYLLEDCNEALSRLKKAFRIPGQLDLP--ERKASPNALTLP 110

This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 110

>gnl\|CDD\|113590 pfam04824, Rad21_Rec8, Conserved region of Rad21 / Rec8 like protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1212
KOG1213		614	consensus Sister chromatid cohesion complex Cohesi	100.0
PF04825		111	Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot	100.0
PF04824		55	Rad21_Rec8: Conserved region of Rad21 / Rec8 like	99.55
PF02616		242	ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 Thi	95.85
PRK00104		242	scpA segregation and condensation protein A; Revie	95.59
COG1354		248	scpA Rec8/ScpA/Scc1-like protein (kleisin family)	90.83
PRK00478		505	scpA segregation and condensation protein A/unknow	84.18

>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=9.6e-59  Score=536.13  Aligned_cols=123  Identities=71%  Similarity=1.097  Sum_probs=120.8

Q ss_pred             CCcchhhhhccCChhHHHHHhhccCCCchhhhcccchHHHHHHhcCCCCcchhhhhhccccceEEEEecchhhHHHhHHH
Q 000947            1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSE   80 (1212)
Q Consensus         1 MFYS~~LLsKKGPLatIWLAAtl~KKLsKkqIl~vDI~ksceeIl~PevPLALRLSG~LLlGVVRIYSRKv~YLLsDcn~   80 (1212)
                      |||||+||+||||||+|||||||+|||+|+||++|||+++|+.|++|.+|||||||||||+||||||||||+|||+|||+
T Consensus         1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne   80 (614)
T KOG1213|consen    1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE   80 (614)
T ss_pred             CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 000947           81 ALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPD  123 (1212)
Q Consensus        81 aL~KIk~aFR~~~VDLP~e~~~A~~eaITLPE~fdLDD~eLPd  123 (1212)
                      +|.|||++||+++||+|......++.+||||++|++|++++|+
T Consensus        81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~  123 (614)
T KOG1213|consen   81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPD  123 (614)
T ss_pred             HHHHHHHHhccccccCCCcccccccccccchhhhccccccccc
Confidence            9999999999999999999999999999999999999988885

>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families	Back alignment and domain information

>PF04824 Rad21_Rec8: Conserved region of Rad21 / Rec8 like protein; InterPro: IPR006909 This domain represents a conserved C-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families	Back alignment and domain information

>PF02616 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 This family represents ScpA, which along with ScpB (IPR005234 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]	Back alignment and domain information

>PRK00104 scpA segregation and condensation protein A; Reviewed	Back alignment and domain information

>COG1354 scpA Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair]	Back alignment and domain information

>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1212
1w1w_E		121	SCC1, sister chromatid cohesion protein 1; cohesin	7e-20
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57 Length = 121	Back alignment and structure

 Score = 85.6 bits (211), Expect = 7e-20
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 1106 NDDEVAEDYDD--GDGCPEDARVLENSGWSSRTRAVSKYLQTLFV-REPVQGRKVLALDH 1162
             ++ +     +       E  R       S     ++K L+      + V    VL    
Sbjct: 10   EENIIDAKTRNEQTTIQTEKVRPTPGEVASKAIVQMAKILRKELSEEKEVIFTDVLKSQA 69

Query: 1163 --LLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKL 1207
                   T++EASR FF+ L L T+  I + Q     NI I     L
Sbjct: 70   NTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKPAL 116

PyMOL of 1w1w

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 65.3 bits (158), Expect = 1e-10
 Identities = 89/655 (13%), Positives = 175/655 (26%), Gaps = 190/655 (29%)

Query: 19  IAAHLERKLRKN----QVADTDIGV----SVDSIL-FPDVPIALRLSSHLLLGVVRIYSR 69
           I +  E     N     V D    +     +D I+   D           L   +     
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR----LFWTLLSKQE 76

Query: 70  KVNYLFDDCSEALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQG 129
           ++   F    E +L+I   F  + +     E   P        +     +    + ++  
Sbjct: 77  EMVQKF---VEEVLRINYKFLMSPIK---TEQRQP--------SMMTRMYIEQRDRLYND 122

Query: 130 N--YVDHHVSTREQIT--------LQD----TMDGMAYSTSQFGLDERFGDGDASQMGLD 175
           N  +  ++VS  +           L+      +DG+             G G        
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL------------GSG-------- 162

Query: 176 LDEDLLLDKGTAAGHGVSDADPQGSVKPTTHWEQDNISERMNEISEERTVNDGANQLERV 235
                   K   A         Q  +     W        +N +    +       L+++
Sbjct: 163 --------KTWVALDVCLSYKVQCKMDFKIFW--------LN-LKNCNSPETVLEMLQKL 205

Query: 236 GLDAEPIEYAEAPSTPGLVQEPNLSSGQKALASYDHFESEDQNSNELMATESRVNDLSNS 295
               +P                + SS  K         S       L+ ++   N L   
Sbjct: 206 LYQIDP----------NWTSRSDHSSNIK-----LRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 296 DCHNGDGHTAD-WPLHKDSNH----DTVQC-MLPEKNGYHV--RDAAVKQAESLGMLSGE 347
                     +      ++      + + C +L       +  R   V   + L   +  
Sbjct: 251 L---------NVQ----NAKAWNAFN-LSCKIL-------LTTRFKQV--TDFLS--AAT 285

Query: 348 SQQVNSDKTAASL----------NCTNVTCDMQDLNPETCPGS--------TNMPVSEDR 389
           +  ++ D  + +L             +  C  QDL  E    +         ++      
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 390 LADYQASNKKKSHNDAEVSDNAAGSG-------SLVV--VDADIHACPDAKDPKMLNI-- 438
             +++  N  K     E S N             L V    A I   P      +L++  
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI---P----TILLSLIW 396

Query: 439 -DVAHEETASVSINVLKPCSYHTSDPHMSSPG-HDNSLAQNLQPLG-VDLHSS------E 489
            DV   +   V +N L   S     P  S+       L   ++      LH S       
Sbjct: 397 FDVIKSDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 490 RSKMNQASVDVQGEECY--------LTDVMQSEKSQISGPSVCGD---IQ---EDNGTLD 535
               +   +     + Y        L ++   E+  +    V  D   ++     + T  
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFLEQKIRHDSTAW 514

Query: 536 EPLDNATASNNELKKLNNSITSDLPAPEKLLSVPEGLLNKPNDLIVESTPEKEVL 590
               +   +  +LK     I  + P  E+L++     L K  + ++ S    ++L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS-KYTDLL 568

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 43.3 bits (101), Expect = 6e-04
 Identities = 85/667 (12%), Positives = 179/667 (26%), Gaps = 211/667 (31%)

Query: 636  EFIPDDD-----DLLSSILVGRKSSVLKMKPTPPVREVASRKRAR------SASQTNALK 684
             F+ + D     D+  SIL   +   + M                       + Q   ++
Sbjct: 28   AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA-------VSGTLRLFWTLLSKQEEMVQ 80

Query: 685  RKVLMDDTMVLHGDVIRQQ---LTNTEDIRRIRKKAPCTGPEILMIQMQFLEDDIFNE-P 740
            + V          +V+R     L +      I+ +     P ++        D ++N+  
Sbjct: 81   KFV---------EEVLRINYKFLMS-----PIKTE--QRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 741  IFTGMS-------AELTSVHCEIHDLSKISISETDKDHGSSEIANDIGC---SIAPNVIE 790
            +F   +        +L     E+     + I       G       +G     +A +V  
Sbjct: 125  VFAKYNVSRLQPYLKLRQALLELRPAKNVLI------DG------VLGSGKTWVALDVCL 172

Query: 791  GGKQGSKEP-----VALRNNGDTQPAETSIQTESHQGIDHQFGAQNTDAQGHINSDTDVV 845
              K   K       + L+N    +     +Q   +Q ID  +    +D   +I      +
Sbjct: 173  SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNW-TSRSDHSSNIKLRIHSI 230

Query: 846  KT-----VQNEPLAE-LNEMDVDRGNVEVAEEASCSVNHGFGTSSQTDVASAEVCNQPTG 899
            +      ++++P    L  +  +  N +            F  S +  +         T 
Sbjct: 231  QAELRRLLKSKPYENCLLVLL-NVQNAKAWN--------AFNLSCKILLT--------TR 273

Query: 900  DKTNTVDASLLVDTVCLTPEPTVDAQPVEVGTSVAKMDNAKGVEDTEVID--RNIENIVA 957
             K  T                  D       T ++   ++  +   EV        +   
Sbjct: 274  FKQVT------------------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 958  VE--TEAKGTDGVLVEEGKVGVSVENGADV-ETDRSVLTDAVNTQEGVSLET-------G 1007
             +   E   T+   +    +  S+ +G    +  + V  D + T    SL          
Sbjct: 316  QDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 1008 GYNDLAAANGDNSRLEVRNEDGP-----LAGDWGSNGKDPTSNHMFSEEPVIDSTNS--- 1059
             ++ L+          V           L+  W              +  V+   N    
Sbjct: 374  MFDRLS----------VFPPSAHIPTILLSLIWFDV----------IKSDVMVVVNKLHK 413

Query: 1060 ---VELGGDTINVSLDDGKSQVDLRSPMDDG----RMEIEEVTIG----NDTEFLNVNDD 1108
               VE       +S+      ++L+  +++     R  ++   I     +D       D 
Sbjct: 414  YSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 1109 ----------EVAEDYDDGDGCPE---DARVLEN------SGWSSRTRAVS------KYL 1143
                      +  E  +          D R LE       + W++    ++       Y 
Sbjct: 472  YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 1144 QTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTK-------------DYIHV 1190
              +   +P   R V A+   L             E  ++ +K             + I  
Sbjct: 532  PYICDNDPKYERLVNAILDFLPK----------IEENLICSKYTDLLRIALMAEDEAIFE 581

Query: 1191 EQARPLD 1197
            E  + + 
Sbjct: 582  EAHKQVQ 588

PyMOL of 1vt4

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1212
1w1w_E		121	SCC1, sister chromatid cohesion protein 1; cohesin	99.85

>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57	Back alignment and structure

Probab=99.85  E-value=1e-22  Score=196.00  Aligned_cols=85  Identities=28%  Similarity=0.356  Sum_probs=64.3

Q ss_pred             CccccccccccccHHHHHHHHHHHHHhccCCCCCCceeeHHHHhc--------cCCHHHHHHHHHHhhccCCCCceeccC
Q 000947         1121 PEDARVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLV--------GKTRKEASRMFFETLVLKTKDYIHVEQ 1192 (1212)
Q Consensus      1121 aee~q~~Ee~gWSKRT~qML~~LRt~F~~~d~~g~dsLSfsqLL~--------G~TRKeAAr~FFElLVLKTrd~IdVeQ 1192 (1212)
                      .++-+..++.+||+||++|+++||.+|...     ++++|++||.        |+|||+||++|||+|||||+|||+|+|
T Consensus        27 ~e~v~~~~~~~~Sk~T~~v~~~Lr~~f~~~-----~~vsfs~LL~~~~~~~~~~~tRkeAAr~FFElLVLaT~d~I~VeQ  101 (121)
T 1w1w_E           27 TEKVRPTPGEVASKAIVQMAKILRKELSEE-----KEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQ  101 (121)
T ss_dssp             -------------CHHHHHHHHHHHHTTSC-----SCEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             ccceeeccCCcccHHHHHHHHHHHHHhCCC-----CCccHHHHHhhccccccCCCCHHHHHHHHHHHHHHccCCeeEEec
Confidence            366677899999999999999999999864     6899999974        889999999999999999999999999


Q ss_pred             CCCCcceeecCCCccccc
Q 000947         1193 ARPLDNINIKPGAKLMKA 1210 (1212)
Q Consensus      1193 eEPYGDI~IsagPkL~ks 1210 (1212)
                      ++|||+|.|++||+||..
T Consensus       102 ~epyGdI~I~~~p~L~~~  119 (121)
T 1w1w_E          102 TEAFGNIKIDAKPALFER  119 (121)
T ss_dssp             CSTTCCEEEEECGGGC--
T ss_pred             CCCCCceEEeeCchhhhh
Confidence            999999999999999863

PyMOL of 1w1w

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1212
d1w1we_		79	a.4.5.57 (E:) Sister chromatid cohesion protein 1	1e-14

>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 79	Back information, alignment and structure


class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rad21/Rec8-like
domain: Sister chromatid cohesion protein 1 (SCC1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 1137 RAVSKYLQTLFVREPVQGRKVLALDHLLVGK--------TRKEASRMFFETLVLKTKDYI 1188
            +A+ +  + L  R+ +   K +    +L  +        T++EASR FF+ L L T+  I
Sbjct: 1    KAIVQMAKIL--RKELSEEKEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCI 58

Query: 1189 HVEQARPLDNINIKPGAKLMK 1209
             + Q     NI I     L +
Sbjct: 59   GLSQTEAFGNIKIDAKPALFE 79

PyMOL of d1w1we_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1212
d1w1we_		79	Sister chromatid cohesion protein 1 (SCC1), C-term	99.75

>d1w1we_ a.4.5.57 (E:) Sister chromatid cohesion protein 1 (SCC1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Rad21/Rec8-like
domain: Sister chromatid cohesion protein 1 (SCC1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.6e-19  Score=161.10  Aligned_cols=71  Identities=30%  Similarity=0.423  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHhccCCCCCCceeeHHHHhc--------cCCHHHHHHHHHHhhccCCCCceeccCCCCCcceeecCCC
Q 000947         1134 SRTRAVSKYLQTLFVREPVQGRKVLALDHLLV--------GKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGA 1205 (1212)
Q Consensus      1134 KRT~qML~~LRt~F~~~d~~g~dsLSfsqLL~--------G~TRKeAAr~FFElLVLKTrd~IdVeQeEPYGDI~IsagP 1205 (1212)
                      |||.+||+.||.+|...     +.+.|++|+.        ++|||+||++||++|||+|++||+|+|++|||||.|++||
T Consensus         1 K~t~q~a~~Lr~el~~~-----~~v~Fsdll~~~~~~~~~~~tR~~Aa~~Fy~~LvL~t~~~i~v~Q~~pygdI~I~~~p   75 (79)
T d1w1we_           1 KAIVQMAKILRKELSEE-----KEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKP   75 (79)
T ss_dssp             CHHHHHHHHHHHHTTSC-----SCEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEECSTTCCEEEEECG
T ss_pred             ChHHHHHHHHHHHHccc-----CceehhhhhhhhhcccccCCCHHHHHHHHHHHHHHccCCeEEEEcCCCcCceEEeeCc
Confidence            68999999999999865     6789999975        6899999999999999999999999999999999999999


Q ss_pred             cccc
Q 000947         1206 KLMK 1209 (1212)
Q Consensus      1206 kL~k 1209 (1212)
                      +||+
T Consensus        76 ~l~~   79 (79)
T d1w1we_          76 ALFE   79 (79)
T ss_dssp             GGC-
T ss_pred             cccC
Confidence            9985

PyMOL of d1w1we_